These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_12993#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1235 fasta sequence [TCCTCGTCTTCGGCCTGCGGGGGCAAGAAGCGGCCCGACATACTCAACATGATCCGGAGTGCAACATGCCTTAATTCGTCATCTACCGATACCGGCAAGGGGAGGAGTAAGCAGTCAAGCAACAAAGTGACTCATGGATTCCACTTGGTGGAAGGGAAATCTGGGCATGACATGGAGGACTACCATGTGGCAGAGTACAAGTATGACAAGAGCCATGAGCTTGGTCTCTTTGCCATTTTTGATGGTCACTTGGGAGACAGTGTTCCAAGTTACTTGAAAGCTAACCTTTTCTGCAACATACTGAAAGAGCCTATCTTCTGGACTAACCCTCAGGAAGCAATTAAGAATGCATACCGCTCTACAAACAAATATATTTTGGAGAATGCCAAACAACTTGGACCTGGTGGTTCAACAGCAGTTACTGCTATTGTCGTTGATGGAAAGGATATGTGGGTAGCAAATGTAGGTGATTCAAGAGCTGTTGTGTGTGAAAGAGGTGCTGCTAATCAGCTCACTGTTGACCATGAACCTCATACAACTAATGAAAGGCAGAGGATTGAGAAGCAGGGTGGCTTTGTAACAACATTTCCTGGTGATGTTCCCCGGGTAAATGGTCAGCTTGCTGTTGCGAGGGCCTTTGGGGACCAAAGCCTCAAGGCGCACTTGAGTTCAGAACCTGATGTTAGGCATGTACCAATAAATTCAAGCATAGAGTTCGTCATACTTGCCAGCGATGGACTATGGAAGGTAATGAAGAACCAGGAAGCCGTCGATCTTGTGAAGTCGATCAAGGACCCCCAGGCAGCAGCGAAGCGACTGACGACCGAAGCGCTTGCGAGGAAGAGCAAGGACGACATCTCCTGCATCGTCATCCGATTCCGCTGCTGAACACCCGCTTCGCAACATTGTCTCTGCGTTTCTCTTCGTTCCGATTGAATTTGTGTGGTGGTGCTGAAAAAAGATGGTTTACCTATAGTATGTAGCTGTTGTGAACAGACCCTAGAGATGAGATATGTTAGCAAGGACAAAACTGGAGATGTTCAAACTTGTGGGTTCAGTAGCGAGTAGTGAGTGTGTGCAGGGTGGTGGTGGGCGGTGGTGATTCGTCTGTGCATACATACACCAGCATAAACTGTTTTATCAATCGAACGGGGCGTGCAGGTTGTTGCCGTTGTGTAAAAAAAAAAAAACTTGGTTTTGGCTGTGAGTTGTGAAATGGTAGTAGTCCCAGTCAT] [+] EMBL AK070129 [TCCTCGTCTTCGGCCTGCGGGGGCAAGAAGCGGCCCGACATACTCAACATGATCCGGAGTGCAACATGCCTTGATTCGTCATCTACCGATACCGGCAAGGGGAGGAGTAAGCAGTCAAGCAACAAAGTGACTCATGGATTCCACTTGGTGGAAGGGAAATCTGGGCATGACATGGAGGACTACCATGTGGCAGAGTACAAGTATGACAAGAGCCATGAGCTTGGTCTCTTTGCCATTTTTGATGGTCACTTGGGAGACAGTGTTCCAAGTTACTTGAAAGCTAACCTTTTCTGCAACATACTGAAAGAGCCTATCTTCTGGACTAACCCTCAGGAAGCAATTAAGAATGCATACCGCTCTACAAACAAATATATTTTGGAGAATGCCAAACAACTTGGACCTGGTGGTTCAACAGCAGTTACTGCTATTGTCGTTGATGGAAAGGATATGTGGGTAGCAAATGTAGGTGATTCAAGAGCTGTTGTGTGTGAAAGAGGTGCTGCTAATCAGCTCACTGTTGACCATGAACCTCATACAACTAATGAAAGGCAGAGGATTGAGAAGCAGGGTGGCTTTGTAACAACATTTCCTGGTGATGTTCCCCGGGTAAATGGTCAGCTTGCTGTTGCGAGGGCCTTTGGGGACCAAAGCCTCAAGGCGCACTTGAGTTCAGAACCTGATGTTAGGCATGTACCAATAAGTTCAAGCATAGAGTTCGTCATACTTGCCAGCGATGGACTATGGAAGGTAATGAAGAACCAGGAAGCCGTCGATCTTGTGAAGTCGATCAAGGACCCCCAGGCAGCAGCGAAGCGACTGACGACCGAAGCGCTTGCGAGGAAGAGCAAGGACGACATCTCCTGCATCGTCATCCGATTCCGCTGCTGAACACCCGCTTCGCAACATTGTCTCTGCGTTTCTCTTCGTTCCGATTGAATTTGTGTGGTGGTGCTGAAAAAAGATGGTTTACCTATAGTATGTAGCTGTTGTGAACAGACCCTAGAGATGAGATATGTTAGCAAGGACAAAACTGGAGATGTTCAAACTTGTGGGTTCAGTAGCGAGTAGTGAGTGTGTGCAGGGTGGTGGTGGGCGGTGGTGATTCGTCTGTGCATACATACACCAGCATAAACTGTTTTATCAATCGAACGGGGCGTGCAGGTTGTTGCCGTTGTGTACATACATTGTTGCTTGGTTTTGGCTGTGAGTTGTGAAATGGTAGTAGTCCCAGTCAT] [+] EMBL CB654813 [TCCTCGTCTTCGGCCTGCGGGGGCAAGAAGCGGCCCGACATACTCAACATGATCCGGAGTGCAACATGCCTTAATTCGTCATCTACCGATACCGGCAAGGGGAGGAGTAAGCAGTCAAGCAACAAAGTGACTCATGGATTCCACTTGGTGGAAGGGAAATCTGGGCATGACATGGAGGACTACCATGTGGCAGAGTACAAGTATGACAAGAGCCATGAGCTTGGTCTCTTTGCCATTTTTGATGGTCACTTGGGAGACAGTGTTCCAAGTTACTTGAAAGCTAACCTTTTCTGCAACATACTGAAAGAGCCTATCTTCTGGACTAACCCTCAGGAAGCAATTAAGAATGCATACCGCTCTACAAACAAATATATTTTGGAGAATGCCAAACAACTTGGACCTGGTGGTTCAACAGCAGTTACTGCTAT ] [+] EMBL CF322897 [TCCTCGTCTTCGGCCTGCGGGGGCAAGAAGCGGCCCGACATACTCAACATGATCCGGAGTGCAACATGCCTTAATTCGTCATCTACCGATACCGGCAAGGGGAGGAGTAAGCAGTCAAGCAACAAAGTGACTCATGGATTCCACTTGGTGGAAGGGAAATCTGGGCATGACATGGAGGACTACCATGTGGCAGAGTACAAGTATGACAAGAGCCATGA ] [+] EMBL CF278442 [TCCTCGTCTTCGGCCTGCGGGGGCAAGAAGCGGCCCGACATACTCAACATGATCCGGAGTGCAACATGCCTTAATTCGTCATCTACCGATACCGGCAAGGGGAGGAGTAAGCAGTCCAGCAACAAAGTGACTCATGGATTCCACTTGGTGGAAGG ] [+] EMBL CF308432 [ gagtagaaaAGCTTGGTCTCTTTGCCATTTTTGATGGTCACTTGGGAGACAGTGTTCCAAGTTACTTGAAAGCTAACCTTTTCTGCAACATACTGAAAGAGCCTATCTTCTGGACTAACCCTCAGGAAGCAATTAAGAATGCATACCGCTCTACAAACAAATATATTTTGGAGAATGCCAAACAACTTGGACCTGGTGGTTCAACAGCAGTTACTGCTATTGTCGTTGATGGAAAGGATATGTGGGTAGCAAATGTAGGTGATTCAAGAGCTGTTGTGTGTGAAAGAGGTGCTGCTAATCAGCTCACTGTTGACCATGAACCTCATACAACTAATGAAAGGCAGAGGATTGAGAAGCAGGGTGGCTTTGTAACAACATTTCCTGGTGATGTTCCCCGGGTAAATGGTCAGCTTGCTGTTGCGAGGGCCTTTGGGGACCAAAGCCTCAAGGCGCACTTGAGTTCAGAACCTGATGTTAGGCATGTACCAATAAATTCAAGCATAGAGTTCGTCATACTTGCCAGCGATAGACTATGGAAGGTAATGAAGAACCAGGAAGCCGTCGATCTTGTGAAGTCGATCAAGGACCCCCAGGCAGCAGCGAAGCGACTGACGACCGAAGCGCTTGCGAGGAAGAGCAAGGACGACATCTCCTGCATCGTCATCCGATTCCGCTGCTGAACACCCGCTTCGCAACATTGTCTCTGCGTTT ] [-] EMBL CB653686 [ GGTAGCAAATGTAGGTGATTCAAGAGCTGTTGTGTGTGAAAGAGGTGCTGCTAATCAGCTCACTGTTGACCATGAACCTCATACAACTAATGAAAGGCAGAGGATTGAGAAGCAGGGTGGCTTTGTAACAACATTTCCTGGTGATGTTCCCCGGGTAAATGGTCAGCTTGCTGTTGCGAGGGCCTTTGGGGACCAAAGCCTCAAGGCGCACTTGAGTTCAGAACCTGATGTTAGGCATGTACCAATAAATTCAAGCATAGAGTTCGTCATACTTGCCAGCGATGGACTATGGAAGGTAATGAAGAACCAGGAAGCCGTCGATCTTGTGAAGTCGATCAAGGACCCCCAGGCAGCAGCGAAGCGACTGACGACCGAAGCGCTTGCGAGGAAGAGCAAGGACGACATCTCCTGCATCGTCATCCGATTCCGCTGCTGAACACCCGCTTCGCAACATTGTCTCTGCGTTTCTCTTCGTTCCGATTGAATTTGTGTGGTGGTGCTGAAAAAAGATGGTTTACCTATAGTATGTAGCTGTTGTGAACAGACCCTAGAGATGAGATATGTTAGCAAGGACAAAACTGGAGATGTTCAAACTTGTGGGTTCAGTAGCGAGTAGTGAGTGTGTGCAGGGTGGTGGTGGGCGGTGGTGATTCGTCTGTGCATACATACACCAGCATAAACTGTTTTATCAATCGAACGGGGCGTGCAGGTTGTTGCCGTTGTGTAAAAAAAAga ] [-] EMBL CB654814 [ AGGTGATTCAAGAGCTGTTGTGTGTGAAAGAGGTGCTGCTAATCAGCTCACTGTTGACCATGAACCTCATACAACTAATGAAAGGCAGAGGATTGAGAAGCAGGGTGGCTTTGTAACAACATTTCCTGGTGATGTTCCCCGGGTAAATGGTCAGCTTGCTGTTGCGAGGGCCTTTGGGGACCAAAGCCTCAAGGCGCACTTGAGTTCAGAACCTGATGTTAGGCATGTACCAATAAATTCAAGCATAGAGTTCGTCATACTTGCCAGCGATGGACTATGGAAGGTAATGAAGAACCAGGAAGCCGTCGATCTTGTGAAGTCGATCAAGGACCCCCAGGCAGCAGCGAAGCGACTGACGACCGAAGCGCTTGCGAGGAAGAGCAAGGACGACATATCCTGCATCGTCATCCGATTCCGCTGCTGAACACCCGCTTCGCAACATTGTCTCTGCGTTTCTCTTCGTTCCGATTGAATTTGTGTGGTGGTGCTGAAAAAAGATGGTTTACCTATAGTATGTAGCTGTTGTGAACAGACCCTAGAGATGAGATATGTTAGCAAGGACAAAACTGGAGATGTTCAAACTTGTGGGTTCAGTAGCGAGTAGTGAGTGTGTGCAGGGTGGTGGTGGGCGGTGGTGATTCGTCTGTGCATACATACACCAGCATAAACTGTTTTATCAATTGAAGGGGGCGTGCAGGTT ] [+] EMBL CA763677 [ GTGCTGCTAATCAGCTCACTGTTGACCATGAACCTCATACAACTAATGAAAGGCAGAGGATTGAGAAGCAGGGTGGCTTTGTAACAACATTTCCTGGTGATGTTCCCCGGGTAAATGGTCAGCTTGCTGTTGCGAGGGCCTTTGGGGACCAAAGCCTCAAGGCGCACTTGAGTTCAGAACCTGATGTTAGGCATGTACCAATAAATTCAAGCATAGAGTTCGTCATACTTGCCAGCGATGGACTATGGAAGGTAATGAAGAACCAGGAAGCCGTCGATCTTGTGAAGTCGATCAAGGACCCCCAGGCAGCAGCGAAGCGACTGACGACCGAAGCGCTTGCGAGGAAGAGCAAGGACGACATCTCCTGCATCGTCATCCGATTCCGCTGCTGAACACCCGCTTCGCAACATTGTCTCTGCGTTTCTCTTCGTTCCGATTGAATTTGTGTGGTGGTGCTGAAAAAAGATGGTTTACCTATAGTATGTAGCTGTTGTGAACAGACCCTAGAGATGAGATATGTTAGCAAGGACAAAACTGGAGATGTTCAAACTTGTGGGTTCAGTAGCGAGTAGTGAGTGTGTGCAGGGTGGTGGTGGGCGGTGGTGATTCGTCTGTGCATACATACACCAGCATAAACTGTTTTATCAATCGAACGGGGCGTGCAGGTTGTTGCCGTCGTGTAAAAAAAAAAAAA ] [-] EMBL CB653685 [ AGAGGATTGAGAAGCAGGGTGGCTTTGTAACAACATTTCCTGGTGATGTTCCCCGGGTAAATGGTCAGCTTGCTGTTGCGAGGGCCTTTGGGGACCAAAGCCTCAAGGCGCACTTGAGTTCAGAACCTGATGTTAGGCATGTACCAATAAATTCAAGCATAGAGTTCGTCATACTTGCCAGCGATGGACTATGGAAGGTAATGAAGAACCAGGAAGCCGTCGATCTTGTGAAGTCGATCAAGGACCCCCAGGCAGCAGCGAAGCGACTGACGACCGAAGCGCTTGCGAGGAAGAGCAAGGACGACATCTCCTGCATCGTCATCCGATTCCGCTGCTGAACACCCGCTTCGCAACATTGTCTCTGCGTTTCTCTTCGTTCCGATTGAATTTGTGTGGTGGTGCTGAAAAAAGATGGTTTACCTATAGTATGTAGCTGTTGTGAACAGACCCTAGAGATGAGATATGTTAGCAAGGACAAAACTGGAGATGTTCAAACTTGTGGGTTCAGTAGCGAGTAGTGAGTGTGTGCAGGGTGGTGGTGGGCGGTGGTGATTCGTCTGTGCATACATACACCAGCATAAACTGTTTTATaag ] [+] EMBL AU070786 [ TGCGAGGGCCTTTGGGGACCAAAGCCTCAAGGCGCACTTGAGTTCAGAACCTGATGTTAGGCATGTACCAATAAATTCAAGCATAGAGTTCGTCATACTTGCCAGCGATGGACTATGGAAGGTAATGAAGAACCAGGAAGCCGTCGATCTTGTGAAGTCGATCAAGGACCCCCAGGCAGCAGCGAA CANCTGACGACCGAAGCGCTTGCGAGGAAGAGCAAGGACGACATCTCCTGCATCGTCATCCGATTCCGCTGCTGAACACCCGCTTCGCAACATTGTCTCTGCGTTTCTCTTCGTTCCGATTGAATTTGTGTGGTGGTGCTGAAAAAAGATGGTTTACCTATAGTATGTAGCTGTTGTGAACAGACCCTAGAGATGAGATATGTTAGCAAGGACAAAACTGGAGATGTTCAAACTTGTGGGTTCAGTAGCGAGTAGTGAGTGTGTGCAGGGTGGTGGTGGGCGGTGGTGATTCGTCTGTGCATACATACACCAGCATAAACTGTTTTATCAATCGAACGGGGCGTGCAGGTTGTTGCCGTTGTGTAAAAAAAAAANAAnaa ] [-] EMBL CF277081 [ GAGTTCAGAACCTGATGTTAGGCATGTACCAATAAATTCAAGCATAGAGTTCGTCATACTTGCCAGCGATGGACTATGGAAGGTAATGAAGAACCAGGAAGCCGTCGATCTTGTGAAGTCGATCAAGGACCCCCAGGCAGCAGCGAAGCGACTGACGACCGAAGCGCTTGCGAGGAAGAGCAAGGACGACATCTCCTGCATCGTCATCCGATTCCGCTGCTGAACACCCGCTTCGCAACATTGTCTCTGCGTTTCTCTTCGTTCCGATTGAATTTGTGTGGTGGTGCTGAAAAAAGATGGTTTACCTATAGTATGTAGCTGTTGTGAACAGACCCTAGAGATGAGATATGTTAGCAAGGACAAAACTGGAGATGTTCAAACTTGTGGGTTCAGTAGCGAGTAGTGAGTGTGTGCAGGGTGGTGGTGGGCGGTGGTGATTCGTCTGTGCATACATACACCAGCATAAACTGTTTTATCAATCGAACGGGGCGTGCAGGTTGTTGCCGTTGTGTCCAAAAAAA ] [-] EMBL CF278443 [ CAAGGACCCCCAGGCAGCAGCGAAGCGACTGACGACCGAAGCGCTTGCGAGGAAGAGCAAGGACGACATCTCCTGCATCGTCATCCGATTCCGCTGCTGAACACCCGCTTCGCAACATTGTCTCTGCGTTTCTCTTCGTTCCGATTGAATTTGTGTGGTGGTGCTGAAAAAAGATGGTTTACCTATAGTATGTAGCTGTTGTGAACAGACCCTAGAGATGAGATATGTTAGCAAGGACAAAACTGGAGATGTTCAAACTTGTGGGTTCAGTAGCGAGCAGTGAGTGTGTGCAGGGTGGTGGTGGGCGGTGGTGATTCGTCTGTGCATACATACACCAGCATAAACTGTTTTATCAATCGAACGGGGCGTGCAGGTAGTTGCCGTTGTGTAAAAAAAAAA ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||