These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13017#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1761 fasta sequence [ATTGATGACCTCCGCCGCCACCGCCGTAGATGCACAGGCTCTCCTTCCTCCAGGCCACCATCATTGACGCGCCGCGGTGGGGGCGGCGAGTCGGAGTCGGAGAATGAGGAGGAGGAGGAGAAGCGGGGGGGCAGGGCGGGGGAGAGGAGGCTCAGAGGCGGCGGGAGCGCCGCGGCGGCGGCGGCGGCGGCGGGGAGCGGGGAGCTCCTCTCCATCCCCGGCGTGGGGCCTCGCAACCAGAGGAAGCTCGTGGACAACGGATTCGAGGGCGTCGCGCAGCTTAAGCAGCTCTATCGGGATAAGTTCTTTGGAAAATATAGCGAGAAGATGGTTGAGTTTTTACAGAGCTCGGTTGGCATCATTCATAAGAACCATGCTGAGAGTATAACTTCTTTCATTAAGGAGAGTGTTGATGAGGAGCTGAAGGATGCAGACTCATCTAAGGCTTCTCAGAAGAAGAGGCTCACCTTTTGCGTGGAAGGGAATATTAGTGTTGGGAAGTCTACCTTTCTCCAAAGAATAGCTAATGAGACCATCGAACTGCGTGATCTTGTAGAAATAGTGCCTGAACCTGTTGCTAAGTGGCAGGATATTGGCCCTGACCACTTCAATATATTGGATGCTTTCTATGCTGAGCCACATAGGTATGCCTATACCTTTCAAAATTATGTGTTTGTGACAAGGGTCATGCAAGAAAGGGAATCTTCAGGTGGAATAAAACCTCTCAGACTGATGGAAAGAAGTGTTTTCAGTGATAGGATGGTATTTGTTCGTGCTGTTCATGAAGCTAACTGGATGAATGAGATGGAGATCAGCATTTACGACTCATGGTTTGATCCTGTTGTGTCATCGCTTCCAGGTCTTATCCCTGATGGATTTATCTATCTAAGAGCTAGCCCAGATACTTGCCACAAAAGAATGATGCTCCGGAAAAGAGCAGAGGAAGGTGGTGTTACTCTTGACTACTTGCAAGGTTTGCATGAGAAACACGAGAGCTGGTTGCTTCCTTCAAAAGGAGGAGGTACTGGTGTGTTATCTGTCAGTCAGCTGCCCACACATTTGGAAGGTTCCTTGCCTCCAGCAATTCGAGATCGTGTCTTTTACTTGGAAGGAGATCACATGCA-CTCAAGCATCCAGAAGGTCCCTGCTCTGGTCTTGGATTGTGAACCTGACATTGATTTCAACAAAGATATAGAAGCTAAACGGCAATATGCTCAGCAAGTTGCAGAATTCTTTCAATTTGTGAAGAAAAAGAAGGAAGCTCCATCTGAACAAACAAGCACTGACAAGAACCGTATCAATCCACAGATCATGCTTCCTCACAAAGGCGGATTGTGGGTTCCTGATGGAAGAAACCCTTTCTCAGGATCTGCTATGAATCTGAACTTCAGAAGAGCCATGTCTTCCTATCTCTCGACATAGGATTTCAGCTCCAGAATGAACGTA-GGATCTTACAAATCCCAC-TCTCAC-TGACCTTGTAAATGGGCCTATGCGTTAAGTTAAACCTAGGTATGTTAGCCACTGATGTAAGATAGTC-TGCCACCGCATC-TCCATCTTTTGT-AAATGAT-CATCTTCCACCCTTTCCGAGTTCCAT-GTTTTGTAGTAGCGTCAGCTTCCGTTTGTCTGAGTTCTGGTATCTGTATCGTTATGTTGGTTGCTGACTACATTCTGTTAGATGATCCGGAACTCTTTGACATTTCTGGGAAAGATGCTTCAGTACTTGCCGTTTGTTTGTCATCAAGGTTGCCATGATTGGTCATG] [+] EMBL AK071740 [ATTGATGACCTCCGCCGCCACCGCCGTAGATGCACAGGCTCTCCTTCCTCCAGGCCACCATCATTGACGCGCCGCGGTGGGGGCGGCGAGTCGGAGTCGGAGAATGAGGAGGAGGAGGAGAAGCGGGGGGGCAGGGCGGGGGAGAGGAGGCTCAGAGGCGGCGGGAGCGCCGCGGCGGCGGCGGCGGCGGCGGGGAGCGGGGAGCTCCTCTCCATCCCCGGCGTGGGGCCTCGCAACCAGAGGAAGCTCGTGGACAACGGATTCGAGGGCGTCGCGCAGCTTAAGCAGCTCTATCGGGATAAGTTCTTTGGAAAATATAGCGAGAAGATGGTTGAGTTTTTACAGAGCTCGGTTGGCATCATTCATAAGAACCATGCTGAGAGTATAACTTCTTTCATTAAGGAGAGTGTTGATGAGGAGCTGAAGGATGCAGACTCATCTAAGGCTTCTCAGAAGAAGAGGCTCACCTTTTGCGTGGAAGGGAATATTAGTGTTGGGAAGTCTACCTTTCTCCAAAGAATAGCTAATGAGACCATCGAACTGCGTGATCTTGTAGAAATAGTGCCTGAACCTGTTGCTAAGTGGCAGGATATTGGCCCTGACCACTTCAATATATTGGATGCTTTCTATGCTGAGCCACATAGGTATGCCTATACCTTTCAAAATTATGTGTTTGTGACAAGGGTCATGCAAGAAAGGGAATCTTCAGGTGGAATAAAACCTCTCAGACTGATGGAAAGAAGTGTTTTCAGTGATAGGATGGTATTTGTTCGTGCTGTTCATGAAGCTAACTGGATGAATGAGATGGAGATCAGCATTTACGACTCATGGTTTGATCCTGTTGTGTCATCGCTTCCAGGTCTTATCCCTGATGGATTTATCTATCTAAGAGCTAGCCCAGATACTTGCCACAAAAGAATGATGCTCCGGAAAAGAGCAGAGGAAGGTGGTGTTACTCTTGACTACTTGCAAGGTTTGCATGAGAAACACGAGAGCTGGTTGCTTCCTTCAAAAGGAGGAGGTACTGGTGTGTTATCTGTCAGTCAGCTGCCCACACATTTGGAAGGTTCCTTGCCTCCAGCAATTCGAGATCGTGTCTTTTACTTGGAAGGAGATCACATGCA CTCAAGCATCCAGAAGGTCCCTGCTCTGGTCTTGGATTGTGAACCTGACATTGATTTCAACAAAGATATAGAAGCTAAACGGCAATATGCTCAGCAAGTTGCAGAATTCTTTCAATTTGTGAAGAAAAAGAAGGAAGCTCCATCTGAACAAACAAGCACTGACAAGAACCGTATCAATCCACAGATCATGCTTCCTCACAAAGGCGGATTGTGGGTTCCTGATGGAAGAAACCCTTTCTCAGGATCTGCTATGAATCTGAACTTCAGAAGAGCCATGTCTTCCTATCTCTCGACATAGGATTTCAGCTCCAGAATGAACGTA GGATCTTACAAATCCCAC TCTCAC TGACCTTGTAAATGGGCCTATGCGTTAAGTTAAACCTAG GTTAGCCACTGATGTAAGATAGTC TGCCACCGCATC TCCATCTTTTGT AAATGAT CATCTTCCACCCTTTCCGAGTTCCAT GTTTTGTAGTAGCGTCAGCTTCCGTTTGTCTGAGTTCTGGTATCTGTATCGTTATGTTGGTTGCTGACTACATTCTGTTAGATGATCCGGAACTCTTTGACATTTCTGGGAAAGATGCTTCAGTACTTGCCG ] [+] EMBL CB650332 [ AGCTTAAGCAGCTCTATCGGGATAAGTTCTTTGGAAAATATAGCGAGAAGATGGTTGAGTTTTTACAGAGCTCGGTTGGCATCATTCATAAGAACCATGCTGAGAGTATAACTTCTTTCATTAAGGAGAGTGTTGATGAGGAGCTGAAGGATGCAGACTCATCTAAGGCTTCTCAGAAGAAGAGGCTCACCTTTTGCGTGGAAGGGAATATTAGTGTTGGGAAGTCTACCTTTCTCCAAAGAATAGCTAATGAGACCATCGAACTGCGTGATCTTGTAGAAATAGTGCCTGAACCTGTTGCTAAGTGGCAGGATATTGGCCCTGACCACTTCAATATATTGGATGCTTTCTATGCTGAGCCACATAGGTATGCCTATACCTTTCAAAATTATGTGTTTGTGACAAGGGTCATGCAAGAAAGGGAATCTTCAGGTGGAATAAAACCTCTCAGACTGATGGAAAGAAGTGTTTTCAGTGATAGGATGGTATTTGTTCGTGCTGTTCATGAAGCTAACTGGATGAATGAGATGGAGATCAGCATTTACGACTCATGGTTTGATCCTGTTGTGTCATCGCTTCCAGGTCTTATCCCTGATGGATTTATCTATCTAAGAGCTAGCCCAGATACTTGCCACAAAAGAATGATGCTCCGGAAAAGAGCAGAGGAAGGTGGTGTTACTCTTGACTACTTGCAAGGTTTGCATGAGAAACACGAGAGCTGGTTGCTTCCTTCAAAAGGAGGAGGTACTGGTGTGTTATCTGTCAGTCAGCTGCCCACACATTTGGAAGGNTCCTTGCCTCCAGCAATTCGAGATCGTGT ] [+] EMBL CB000129 [ TAACTTCTTTCATTAAGGAGAGTGTTGATGAGGCGTTGAAGGATGCAGACTCATCTAAGGCTTCTCAGAAGAAGAGGCTCACCTTTTGCGTGGAAGGGAATATTAGTGTTGGGAAGTCTACCTTTCTCCAAAGAATAGCTAATGAGACCATCGAACTGCGTGATCTTGTAGAAATAGTGCCTGAACCTGTTGCTAAGTGGCAGGATATTGGCCCTGACCACTTCAATATATTGGATGCTTTCTATGCTGAGCCACATAGGTATGCCTATACCTTTCAAAATTATGTGTTTGTGACAAGGGTCATGCAAGAAAGGGAATCTTCAGGTGGAATAAAACCTCTCAGACTGATGGAAAGAAGTGTTTTCAGTGATAGGATGGTATTTGTTCGTGCTGTTCATGAAGCTAACTGGATGAATGAGATGGAGATCAGCATTTACGACTCATGGTTTGATCCTGTTGTGTCATCGCTTCCAGGTCTTATCCCTGATGGATTTATCTATCTAAGAGCTAGCCCAGATACTTGCCACAAAAGAATGATGCTCCGGAAAAGAGCAGAGGAAGGTGGTGTTACTCTTGACTACTTGCAAGGTTTGCATGAGAAACACGAGAGCTGGTTGCTTCCTTCAAAAGGAGGAGGTACTGGTGTGTTATCTGTCAGTCAGCTGCCCACACATTTGGAAGGTTCCTTGCCTCCAGCAATTCGAGATCGTGTCTTTTACTTGGAAGGAGATCACATGCACCTCAAGCATCCCGAAGGTCCCTGCTCTGGTCTTGGATTGTG ] [+] EMBL AK059420 [ TGATCTTGTAGAAATAGTGCCTGAACCTGTTGCTAAGTGGCAGGATATTGGCCCTGACCACTCCAATATATTGGATGCTTTCTATGCTGAGCCACATAGGTATGCCTATACCTTTCAAAATTATGTGTTTGTGACAAGGGTCATGCAAGAAAGGGAATCTTCAGGTGGAATAAAACCTCTCAGACTGATGGAAAGAAGTGTTTTCAGTGATAGGATGGTATTTGTTCGTGCTGTTCATGAAGCTAACTGGATGAATGAGATGGAGATCAGCATTTACGACTCATGGTTTGATCCTGTTGTGTCATCGCTTCCAGGTCTTATCCCTGATGGATTTATCTATCTAAGAGCTAGCCCAGATACTTGCCACAAAAGAATGATGCTCCGGAAAAGAGCAGAGGAAGGTGGTGTTACTCTTGACTACTTGCAAGGTTTGCATGAGAAACACGAGAGCTGGTTGCTTCCTTCAAAAGGAGGAGGTACTGGTGTGTTATCTGTCAGTCAGCTGCCCACACATTTGGAAGGTTCCTTGCTTCCAGCAATTCGAGATCGTGTCTTTTACTTGGAAGGAGATCACATGCA CTCAAGCATCCAGAAGGTCCCTGCTCTGGTCTTGGATTGTGAACCTGACATTGATTTCAACAAAGATATAGAAGCTAAACGGCAATATGCTCAGCAAGTTGCAGAATTCTTTCAATTTGTGAAGAAAAAGAAGGAAGCTCCATCTGAACAAACAAGCACTGACAAGAACCGTATCAATCCACAGATCATGCTTCCTCACAAAGGCGGATTGTGGGTTCCTGATGGAAGAAACCCTTTCTCAGGATCTGCTATGAATCTGAACTTCAGAAGAGCCATGTCTTCCTATCTCTCGACATAGGATTTCAGCTCCAGAATGAACGTA GGATCTTACAAATCCCAC TCTCAC TGACCTTGTAAATGGGCCTATGCGTTAAGTTAAACCTAGGTATGTTAGCCACTGATGTAAGATAGTC TGCCACCGCATC TCCATCTTTTGT AAATGAT CATCTTCCACCCTTTCCGAGTTCCAT GTTTTGTAGTAGCGTCAGCTTCCGTTTGTCTGAGTTCTGGTATCTGTATCGTTATGTTGGTTGCTGACTACATTCTGTTAGATGATCCGGAACTCTTTGACATTTCTGGGAAAGATGCTTCAGTACTTGCCGTTTGTTTGTCATCAAGGTTGCCATGATTGGTCATG] [-] EMBL CB650333 [ TTGCATGAGAAACACGAGAGCTGGTTGCTTCCTTCAAAAGGAGGAGGTACTGGTGTGTTATCTGTCAGTCAGCTGCCCACACATTTGGAAGGTTCCTTGCCTCCAGCAATTGGAGATCGTGTCTTTTACTTGGAAGGAGATCACATGCA CTCAAGCATCCAGAAGGTCCCTGCTCTGGTCTTGGATTGTGAACCTGACATTGATTTCAACAAAGATATAGAAGCTAAACGGCAATATGCTCAGCAAGTTGCAGAATTCTTTCAATTTGTGAAGAAAAAGAAGGAAGCTCCATCTGAACAAACAAGCACTGACAAGAACCGTATCAATCCACAGATCATGCTTCCTCACAAAGGCGGATTGTGGGTTCCTGATGGAAGAAACCCTTTCTCAGGATCTGCTATGAATCTGAACTTCAGAAGAGCCATGTCTTCCTATCTCTCGACATAGGATTTCAGCTCCAGAATGAACGTA GGATCTTACAAATCCCAC TCTCAC TGACCTTGTAAATGGGCCTATGCGTTAAGTTAAACCTAGGTATGTTAGCCACTGATGTAAGATAGTC TGCCACCGCATC TCCATCTTTTGT AAATGAT CATCTTCCACCCTTTCCGAGTTCCAT GTTTTGTAGTAGCGTCAGCTTCCGTTTGTCTGAGTTCTGGTATCTGTATCGTTATGTTGGTTGCTGACTACATTAGGTTAGATGATCCGGAACTCTTTGACATTTCTGGG ] [+] EMBL CB238439 [ GTCTTTTACTTGGAAGGAGATCACATGCA CTCAAGCATCCAGAAGGTCCCTGCTCTGGTCTTGGATTGTGAACCTGACATTGATTTCAACAAAGATATAGAAGCTAAACGGCAATATGCTCAGCAAGTTGCAGAATTCTTTCAA TTGTGAAGAAAAAGAAGGAAGCTCCATCTGAACAAACAAGCACTGACAAGAACCGTATCAATCCACAGATCATGCTTCCTCACAAAGGCGGATTGTGGGTTCCTGATGGAAGAAACCCTTTCTCAGGATCTGCTATGAATCTGAACTTCAGAAGAGCCATGTCT ] [+] EMBL C73813 [ TCAGCAAGTTGCAGAATTCTTTCAATTTGTGAAGAAAAAGAAGGAAGCTCCATCTGAACAAACAAGCACTGACAAGAACCGTATCAATCCACAGATCATGCTTCCTCACAAAGGCGGATTGTGGGTTCCTGATGGAAGAAACCCTTTCTCAGGATCTGCTATGAATCTGAACTTCAGAAGAGCCATGTCTTCCTATCTCTCGACATAGGATTTCAGCTCCAGAATGAACGTAGGGATCTTACAAATCCCACTTCTCACTTGACCTTGTAAATGGGCCTATGCGTTAAGTTAAACCTAGGTATGTTAGCCACTGATGTAAGATAGTCTTGCCACCGCATCTTCCATCTTTTGTAAAATGATCCATCTTCCACCCTTTCCGGGTTCCATGGTTTTGTAGTAGCGTCAGTTTCCGTTTGCTTGNGTCCTGG ATCTGGAT ] consensusID : consensus_13017#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 696 fasta sequence [TTTTTTTTTTTTTGAAAATTCACCAGGGGGGAGAGTTTCCCCACCTGAATATATTAAAGAAGAAATAAGGGGGAAGGAGTGCAGTGTTCAGTTACACAATTAAGGAGCGAATACAAGTTGAGAAAAGGGATTTCCAAGAGGAGATTACATGTCGATCATCTATTTTAATTCTTTCAGCCCACAGGGAAGCATCATCAATGCACTTCGTGAGCAACCAACGGAGCGAAATTTCTTCTCTTCTAAAGACCACATCATGTCGATAAATCCATAAATTCCAGAAACATAGAAGATAGAAAACCCGAAAGTGTTTAGTTGGGATAGATGATGGGGGGGTGAGAGTTANNACCCTGCNATAGGTGGGGAGCTGAGGGGGATCCCACGGTTTGTCTATAATGGCGTGGGACACCGCGGGTGACGGGATAGGGGTGAGGGAGTGCCCCCCCACGCAGCGGGGTTCACCTGGGAGAGGGCGGAGAGGCGCGATGTGTCCGTTGTGTTTCCGTGAGAACAGACGCAGGTCCCAGCCCGCGGGAGAGTGCGAGAGATTGTACCGACCGGCGCGCGCCTGCGTGTGGGGCAAGCCAGATATTTATCGCGGGCGGTCGCGTAGGGCGGGTTCTCTTGCCGCGCGCGTGCCCCGCGGTCTCTCAGCGCTTGTTGTGACTCGTAGCAGGGAGTTGCTCGAGGGTGTTGGGT] [+] EMBL CA760142 [TTTTTTTTTTTTTGAAAATTCACCAGGGGGGAGAGTTTCCCCACCTGAATATATTAAAGAAGAAATAAGGGGGAAGGAGTGCAGTGTTCAGTTACACAATTAAGGAGCGAATACAAGTTGAGAAAAGGGATTTCCAAGAGGAGATTACATGTCGATCATCTATTTTAATTCTTTCAGCCCACAGGGAAGCATCATCAATGCACTTCGTGAGCAACCAACGGAGCGAAATTTCTTCTCTTCTAAAGACCACATCATGTCGATAAATCCATAAATTCCAGAAACATAGAAGATAGAAAACCCGAAAGTGTTTAGTTGGGATAGATGATGGGGGGGTGAGAGTTANNACCCTGCNATAGGTGGGGAGCTGAGGGGGATCCCACGGTTTGTCTATAATGGCGTGGGACACCGCGGGTGACGGGATAGGGGTGAGGGAGTGCCCCCCCACGCAGCGGGGTTCACCTGGGAGAGGGCGGAGAGGCGCGATGTGTCCGTTGTGTTTCCGTGAGAACAGACGCAGGTCCCAGCCCGCGGGAGAGTGCGAGAGATTGTACCGACCGGCGCGCGCCTGCGTGTGGGGCAAGCCAGATATTTATCGCGGGCGGTCGCGTAGGGCGGGTTCTCTTGCCGCGCGCGTGCCCCGCGGTCTCTCAGCGCTTGTTGTGACTCGTAGCAGGGAGTTGCTCGAGGGTGTTGGGT] consensusID : consensus_13017#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 659 fasta sequence [GAGGACGAGACAAGGGGGGAGATCACATGCACTCAAGCATCCAGAAGGTCCCTGCTCTGGTCTTGGATTGTGAACCTGACATTGATTTCAACAAAGATATAGAAGCTAAACGGCAATATGCTCAGCAAGTTGCAGAATTCTTTCAATTTGTGAAGAAAAAGAAGGAAGCTCCATCTGAACAAACAAGCACTGCCAAGAACCGTATCAATCCACAGATCATGCTTCCTCACAAAGGCGGATTGTGGGTTCCTGATGGAAGAAACCCTTTCTCAGGATCTGCTATGAATCTGAACTTCAGAAGAGCCATGTCTTCCTATCTCTCGA-CA-TAGGATTTCAGCTCCAGAATGAACGTAGGATCTTACAAATCCCACTCTCACTGACCTTGTAAATGGGCCTATGCGTTAAGTTAAACCTAGGTATGCTAGCCACTGATGTAAGATAGTCTGCCACCGCATCTCCATCTTTTGTAAATGATCATCTTCCACCCTTTCCGAGTTCCATGTTTTGTAGTAGCGTCAGCTTCCGTTTGTCTGAGTTCTGGTATCTGTATCGTTATGTTGGTTGCTGACTACATTCTGTTAGATGATCCGGAACTCTTTGACATTTCTGGGAAAGATGCTTCAGTACTTGCCGTTTGTTTGTCATCAAGGTTGCCATGA] [+] EMBL CA764867 [GAGGACGAGACAAGGGGGGAGATCACATGCACTCAAGCATCCAGAAGGTCCCTGCTCTGGTCTTGGATTGTGAACCTGACATTGATTTCAACAAAGATATAGAAGCTAAACGGCAATATGCTCAGCAAGTTGCAGAATTCTTTCAATTTGTGAAGAAAAAGAAGGAAGCTCCATCTGAACAAACAAGCACTGCCAAGAACCGTATCAATCCACAGATCATGCTTCCTCACAAAGGCGGATTGTGGGTTCCTGATGGAAGAAACCCTTTCTCAGGATCTGCTATGAATCTGAACTTCAGAAGAGCCATGTCTTCCTATCTCTCGA CA TAGGATTTCAGCTCCAGAATGAACGTAGGATCTTACAAATCCCACTCTCACTGACCTTGTAAATGGGCCTATGCGTTAAGTTAAACCTAGGTATGCTAGCCACTGATGTAAGATAGTCTGCCACCGCATCTCCATCTTTTGTAAATGATCATCTTCCACCCTTTCCGAGTTCCATGTTTTGTAGTAGCGTCAGCTTCCGTTTGTCTGAGTTCTGGTATCTGTATCGTTATGTTGGTTGCTGACTACATTCTGTTAGATGATCCGGAACTCTTTGACATTTCTGGGAAAGATGCTTCAGTACTTGCCGTTTGTTTGTCATCAAGGTTGCCATGA] [+] EMBL BQ906967 [ AGCTAAACGGCAATATGCTCAGCAAGTTGCAGAATTCTTTCAATTTGTGAAGAAAAAGAAGGAAGCTCCATCTGAACAAACAAGCACTGCCAAGAACCGTATCAATCCACAGATCATGCTTCCTCACAAAGGCGGATTGTGGGTTCCTGATGGAAGAAACCCTTTCTCAGGATCTGCTATGAATCTGAACTTCAGAAGAGCCATGTCTTCCTATCTCTCGACCATTAGGATTTCAGCTCCAGAATGAACGTAGGATCTTACAAATCCCACTCTCACTGACCTTGTAAATGGGCCTATGCGTTAAGTTAAACCTAGGTATGCTAGCCACTGATGTAAGATAGTCTGCCACCGCATCTCCATCTTTTGTAAATGATCATCTTCCACCCTTTCCGAGTTCCATGTTTTGTAGTAGCGTCAGCTTCCGTTTGTCTGAGTTCTGGTATCTGTATCGTTATGTTGGTTGCTGACTACATTCTGTTAGATGATCCGGAACTCTTTGACATTTCTGGGAAAGATGCTTCAGTACTTGCCGTTTGTTTGTaaaaa ] consensusID : consensus_13017#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence [AAATTTGTCTGGGAAAACAAGGCCCCCCTGAAGATCCAATTCTTTGCATGGCTACTGGTTAGGGATCGCCTCCCTACTAAGAAGAATCTACACAAAAAAACTATTGTGCCGTCTCCAGAGTGTGATCTCTGTTTTCTTACTGAAGAAACGGCCTCACATCTATGCCTTCACTGTTTTGTTTCCCTGCAGTTTTGGGCGAGCCTTGGGATCACTCTTAACATCCTATCTATTGCCAGTGTCTCAACTCTCACCCCCCCATCATCTATCCCAACTAAACACTTTCAGGTTTTCTATCTTCTATGTTTCTGGAATTTATGGATTCATCGACATGATGTGGTCTTTAGAAGAGAAGAAATTTCGCTCCGTCGGTTGCTCACGAAATGCATTGATGATGCTTCCCTGTGGGCTGAAAGAATTAAAATAGATGATCGACATTTCTTTGGAAAATATAGCGAGAAGATGGTTGAGTTTTTACAGAGCTCGGTTGGCATCATTCATAAGAACCATGCTGAGAGTATAACTTCTTTCATTAAGGAGAGTGTTGATGAGGAGCTGAAGGATGCAGACTCATCTAAGGCTTCTCAGAAGAAGAGGCTCACCT] [+] EMBL CF306201 [AAATTTGTCTGGGAAAACAAGGCCCCCCTGAAGATCCAATTCTTTGCATGGCTACTGGTTAGGGATCGCCTCCCTACTAAGAAGAATCTACACAAAAAAACTATTGTGCCGTCTCCAGAGTGTGATCTCTGTTTTCTTACTGAAGAAACGGCCTCACATCTATGCCTTCACTGTTTTGTTTCCCTGCAGTTTTGGGCGAGCCTTGGGATCACTCTTAACATCCTATCTATTGCCAGTGTCTCAACTCTCACCCCCCCATCATCTATCCCAACTAAACACTTTCAGGTTTTCTATCTTCTATGTTTCTGGAATTTATGGATTCATCGACATGATGTGGTCTTTAGAAGAGAAGAAATTTCGCTCCGTCGGTTGCTCACGAAATGCATTGATGATGCTTCCCTGTGGGCTGAAAGAATTAAAATAGATGATCGACATTTCTTTGGAAAATATAGCGAGAAGATGGTTGAGTTTTTACAGAGCTCGGTTGGCATCATTCATAAGAACCATGCTGAGAGTATAACTTCTTTCATTAAGGAGAGTGTTGATGAGGAGCTGAAGGATGCAGACTCATCTAAGGCTTCTCAGAAGAAGAGGCTCACCT] consensusID : consensus_13017#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 392 fasta sequence [AGGGGATAACACCAAAACCCTCCCCCCTCCAAACCCTAGTCCCCCATTGATGACCTCCGCCGCCACCGCCGTAGATGCACAGGCTCTCCTTCCTCCAGGCCACCATCATTGACGCGCCGCTGCTCCTCTCCTCCGCCTCCATGGCCACCGTGCCGGCGCTGCGGCTCGGCTCCCCCGCCGCGCTCCTAGNAGNGNNCCGCCCGCCGCGGTGGCTGCGGTGCGGCGGCGGCGGTGTCGGGGGAGGGGGAGGGGGAGTGGGAGTGGCGCGGAGGGGGATGGCGTGCTCCGTGGAGGCCTTGGCGANGCGCGGTGGGGGCGGCGAGTCGGAGTCGGAGAATTAAGGAAGAGGAGGAGAAGCGGAGGGGCAAGGCGGGGGAAAAGAAGCTTCANAA] [+] EMBL AU163577 [AGGGGATAACACCAAAACCCTCCCCCCTCCAAACCCTAGTCCCCCATTGATGACCTCCGCCGCCACCGCCGTAGATGCACAGGCTCTCCTTCCTCCAGGCCACCATCATTGACGCGCCGCTGCTCCTCTCCTCCGCCTCCATGGCCACCGTGCCGGCGCTGCGGCTCGGCTCCCCCGCCGCGCTCCTAGNAGNGNNCCGCCCGCCGCGGTGGCTGCGGTGCGGCGGCGGCGGTGTCGGGGGAGGGGGAGGGGGAGTGGGAGTGGCGCGGAGGGGGATGGCGTGCTCCGTGGAGGCCTTGGCGANGCGCGGTGGGGGCGGCGAGTCGGAGTCGGAGAATTAAGGAAGAGGAGGAGAAGCGGAGGGGCAAGGCGGGGGAAAAGAAGCTTCANAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13017#0 ATTGATGACCTCCGCCGCCACCGCCGTAGATGCACAGGCTCTCCTTCCTCCAGGCCACCA 60 consensus_13017#2 ------------------------------------------------------------ consensus_13017#3 ------------------------------------------------------------ consensus_13017#4 ------------------------------------------------------------ consensus_13017#1 ------------------------------------------------------------ consensus_13017#0 TCATTGACGCGCCGCGGTGGGGGCGGCGAGTCGGAGTCGGAGAATGAGGAGGAGGAGGAG 120 consensus_13017#2 ------------------------------------------------------------ consensus_13017#3 ------------------------------------------------------------ consensus_13017#4 ------------------------------------------------------------ consensus_13017#1 ------------------------------------------------------------ consensus_13017#0 AAGCGGGGGGGCAGGGCGGGGGAGAGGAGGCTCAGAGGCGGCGGGAGCGCCGCGGCGGCG 180 consensus_13017#2 ------------------------------------------------------------ consensus_13017#3 ------------------------------------------------------------ consensus_13017#4 ------------------------------------------------------------ consensus_13017#1 ------------------------------------------------------------ consensus_13017#0 GCGGCGGCGGCGGGGAGCGGGGAGCTCCTCTCCATCCCCGGCGTGGGGCCTCGCAACCAG 240 consensus_13017#2 ------------------------------------------------------------ consensus_13017#3 ------------------------------------------------------------ consensus_13017#4 ------------------------------------------------------------ consensus_13017#1 ------------------------------------------------------------ consensus_13017#0 AGGAAGCTCGTGGACAACGGATTCGAGGGCGTCGCGCAGCTTAAGCAGCTCTATCGGGAT 300 consensus_13017#2 ------------------------------------------------------------ consensus_13017#3 ------------------------------------------------------------ consensus_13017#4 ------------------------------------------------------------ consensus_13017#1 ------------------------------------------------------------ consensus_13017#0 AAGTTCTTTGGAAAATATAGCGAGAAGATGGTTGAGTTTTTACAGAGCTCGGTTGGCATC 360 consensus_13017#2 ------------------------------------------------------------ consensus_13017#3 ------------------------------------------------------------ consensus_13017#4 ------------------------------------------------------------ consensus_13017#1 ------------------------------------------------------------ consensus_13017#0 ATTCATAAGAACCATGCTGAGAGTATAACTTCTTTCATTAAGGAGAGTGTTGATGAGGAG 420 consensus_13017#2 ------------------------------------------------------------ consensus_13017#3 ------------------------------------------------------------ consensus_13017#4 ------------------------------------------------------------ consensus_13017#1 ------------------------------------------------------------ consensus_13017#0 CTGAAGGATGCAGACTCATCTAAGGCTTCTCAGAAGAAGAGGCTCACCTTTTGCGTGGAA 480 consensus_13017#2 ------------------------------------------------------------ consensus_13017#3 ------------------------------------------------------------ consensus_13017#4 ------------------------------------------------------------ consensus_13017#1 ------------------------------------------------------------ consensus_13017#0 GGGAATATTAGTGTTGGGAAGTCTACCTTTCTCCAAAGAATAGCTAATGAGACCATCGAA 540 consensus_13017#2 ------------------------------------------------------------ consensus_13017#3 ------------------------------------------------------------ consensus_13017#4 ------------------------------------------------------------ consensus_13017#1 ------------------------------------------------------------ consensus_13017#0 CTGCGTGATCTTGTAGAAATAGTGCCTGAACCTGTTGCTAAGTGGCAGGATATTGGCCCT 600 consensus_13017#2 ------------------------------------------------------------ consensus_13017#3 ------------------------------------------------------------ consensus_13017#4 ------------------------------------------------------------ consensus_13017#1 ------------------------------------------------------------ consensus_13017#0 GACCACTTCAATATATTGGATGCTTTCTATGCTGAGCCACATAGGTATGCCTATACCTTT 660 consensus_13017#2 ------------------------------------------------------------ consensus_13017#3 ------------------------------------------------------------ consensus_13017#4 ------------------------------------------------------------ consensus_13017#1 ------------------------------------------------------------ consensus_13017#0 CAAAATTATGTGTTTGTGACAAGGGTCATGCAAGAAAGGGAATCTTCAGGTGGAATAAAA 720 consensus_13017#2 ------------------------------------------------------------ consensus_13017#3 ------------------------------------------------------------ consensus_13017#4 ------------------------------------------------------------ consensus_13017#1 ------------------------------------------------------------ consensus_13017#0 CCTCTCAGACTGATGGAAAGAAGTGTTTTCAGTGATAGGATGGTATTTGTTCGTGCTGTT 780 consensus_13017#2 ------------------------------------------------------------ consensus_13017#3 ------------------------------------------------------------ consensus_13017#4 ------------------------------------------------------------ consensus_13017#1 ------------------------------------------------------------ consensus_13017#0 CATGAAGCTAACTGGATGAATGAGATGGAGATCAGCATTTACGACTCATGGTTTGATCCT 840 consensus_13017#2 ------------------------------------------------------------ consensus_13017#3 ------------------------------------------------------------ consensus_13017#4 ------------------------------------------------------------ consensus_13017#1 ------------------------------------------------------------ consensus_13017#0 GTTGTGTCATCGCTTCCAGGTCTTATCCCTGATGGATTTATCTATCTAAGAGCTAGCCCA 900 consensus_13017#2 ------------------------------------------------------------ consensus_13017#3 ------------------------------------------------------------ consensus_13017#4 ------------------------------------------------------------ consensus_13017#1 ------------------------------------------------------------ consensus_13017#0 GATACTTGCCACAAAAGAATGATGCTCCGGAAAAGAGCAGAGGAAGGTGGTGTTACTCTT 960 consensus_13017#2 ------------------------------------------------------------ consensus_13017#3 ------------------------------------------------------------ consensus_13017#4 ------------------------------------------------------------ consensus_13017#1 ------------------------------------------------------------ consensus_13017#0 GACTACTTGCAAGGTTTGCATGAGAAACACGAGAGCTGGTTGCTTCCTTCAAAAGGAGGA 1020 consensus_13017#2 ------------------------------------------------------------ consensus_13017#3 ------------------------------------------------------------ consensus_13017#4 ------------------------------------------------------------ consensus_13017#1 ------------------------------------------------------------ consensus_13017#0 GGTACTGGTGTGTTATCTGTCAGTCAGCTGCCCACACATTTGGAAGGTTCCTTGCCTCCA 1080 consensus_13017#2 ------------------------------------------------------------ consensus_13017#3 ------------------------------------------------------------ consensus_13017#4 ------------------------------------------------------------ consensus_13017#1 ------------------------------------------------------------ consensus_13017#0 GCAATTCGAGATCGTGTCTTTTACTTGGAAGGAGATCACATGCACTCAAGCATCCAGAAG 1140 consensus_13017#2 -------GAGGACGAG------ACAAGGGGGGAGATCACATGCACTCAAGCATCCAGAAG 47 consensus_13017#3 ------------------AAATTTGTCTGGGAAAACAAGGCCCCCCTGAAGATCCAA--- 39 consensus_13017#4 ------------------------------------------------------------ consensus_13017#1 -TTTTTTTTTTTTTGAAAATTCACCAGGGGGGAGAGTTTCCCCACCTGAATATATTAAAG 59 consensus_13017#0 GTCCCTGCTCTGGTCTTGGATTGTGAACCTGACATTGATTTCAACAAAGATATAGA-AGC 1199 consensus_13017#2 GTCCCTGCTCTGGTCTTGGATTGTGAACCTGACATTGATTTCAACAAAGATATAGA-AGC 106 consensus_13017#3 -TTCTTTGCATGGCTACTGGTTAGGGATC--GCCTCCCTACTAAGAAGAATCTACACAAA 96 consensus_13017#4 ------------------------------------------------------------ consensus_13017#1 AAGAAATAAGGGGGAAGGAGTGCAGTGTTCAGTTACACAATTAAGGAGCGAATACA-AGT 118 consensus_13017#0 TAAACGGCAATATGCTCAGCAAGTTGCAGAATTCTTTCAATTTGTGAAGAAAAAGAAGGA 1259 consensus_13017#2 TAAACGGCAATATGCTCAGCAAGTTGCAGAATTCTTTCAATTTGTGAAGAAAAAGAAGGA 166 consensus_13017#3 AAAACTATTGTGCCGTCTCCAGAGTGTGATCTCTGTTTTCTTACTGAAGAAACGGCCTCA 156 consensus_13017#4 ------------------------------------------------------------ consensus_13017#1 TGAGAAAAGGGATTTCCAAGAGGAGATTACATGTCGATCATCTATTTTAATTCTTTCAGC 178 consensus_13017#0 -AGCTCCATCTGAACAAACAAGCACTGACA-AGAACCGTATCAATC--CACAGATCATGC 1315 consensus_13017#2 -AGCTCCATCTGAACAAACAAGCACTGCCA-AGAACCGTATCAATC--CACAGATCATGC 222 consensus_13017#3 CATCTATGCCTTCACTGTTTTGTTTCCCTGCAGTTTTGGGCGAGCC--TTGGGATCACTC 214 consensus_13017#4 ------------------------------------AGGGGATAAC--ACCAAAACCCTC 22 consensus_13017#1 -----CCACAGGGAAGCATCATCAATGCACTTCGTGAGCAACCAACGGAGCGAAATTTCT 233 * * * consensus_13017#0 TTCCTCACAAAGGCGGATTGTGGGTTCCTGATGGAAGAAACCCTTTCTCAGGATCTGCTA 1375 consensus_13017#2 TTCCTCACAAAGGCGGATTGTGGGTTCCTGATGGAAGAAACCCTTTCTCAGGATCTGCTA 282 consensus_13017#3 TTAACATCCTATCT--ATTGCCAGTGTCTCA----ACTCTCACCCCCCCATCATCTATCC 268 consensus_13017#4 CCCCCTCCAAACCCTAGTCCCCCATTGATGACC--TCCGCCGCCACCGCCGTAGATGCAC 80 consensus_13017#1 TCTCTTCTAAAGACC-ACATCATGTCGATAAATCCATAAATTCCAGAAACATAGAAGATA 292 * * * * * * consensus_13017#0 TGAATCTGA----ACTTCAGAAGAGCCATGTCTTCC-TATCTCTCGA-CATAGGATTTCA 1429 consensus_13017#2 TGAATCTGA----ACTTCAGAAGAGCCATGTCTTCC-TATCTCTCGA-CATAGGATTTCA 336 consensus_13017#3 CAACTAAAC----ACTTTC-AGGTTTTCTATCTTCTATGTTTCTGGAATTTATGGATTCA 323 consensus_13017#4 AGGCTCTCC----TTCCTCCAGGC-CACCATCATTGACGCGCCGCTGCTCCTCTCCTCCG 135 consensus_13017#1 GAAAACCCGAAAGTGTTTAGTTGGGATAGATGATGGGGGGGTGAGAGTTANNACCCTGCN 352 * * * * * consensus_13017#0 GCTCCAGAATGAA---CGTAGGATCTTACAAATCCCACTCTCACTGAC-----CTTGTA- 1480 consensus_13017#2 GCTCCAGAATGAA---CGTAGGATCTTACAAATCCCACTCTCACTGAC-----CTTGTA- 387 consensus_13017#3 TCGACATGATGTGGTCTTTAGAAGAGAAGAAATTTCGCTCCGTCGG--------TTGCT- 374 consensus_13017#4 CCTCCATGGCCAC-CGTGCCGGCGCTGCGGCTCGGCTCCCCCGCCGCG-----CTCCTAG 189 consensus_13017#1 ATAGGTGGGGAGCTGAGGGGGATCCCACGGTTTGTCTATAATGGCGTGGGACACCGCGGG 412 * * * consensus_13017#0 AATGGGCCTATGCGTTAA-GTT-AAACCTAGGTATGTTAGCCACTGATGTAAGATAGTCT 1538 consensus_13017#2 AATGGGCCTATGCGTTAA-GTT-AAACCTAGGTATGCTAGCCACTGATGTAAGATAGTCT 445 consensus_13017#3 CACGAA---ATGCATTGATGAT-GCTTCCCTGTGGGCTG---AAAGAATTAAAATAGATG 427 consensus_13017#4 NAGNGNNCCGCCCGCCGCGGTG-GCTGC--GGTGCGGCGGCGGCGGTGTCGGGGGAGGGG 246 consensus_13017#1 TGACGGGATAGGGGTGAGGGAGTGCCCCCCCACGCAGCGG-GGTTCACCTGGGAGAGGGC 471 * * ** consensus_13017#0 GCCACCGCATCT-CCATCTTTTGTAA-ATGATCATCTTCCACCCTT-TCCGAGTTCCATG 1595 consensus_13017#2 GCCACCGCATCT-CCATCTTTTGTAA-ATGATCATCTTCCACCCTT-TCCGAGTTCCATG 502 consensus_13017#3 ATCGACATTTCT-TTGGAAAATATAGCGAGAAGATGGTTGAGTTTT-TACAGAGCTC--G 483 consensus_13017#4 GAGGGGGAGTGG-GAGTGGCGCGGAG---GGGGATGGCGTGCTCCG-TGGAGGCC----- 296 consensus_13017#1 GGAGAGGCGCGATGTGTCCGTTGTGTTTCCGTGAGAACAGACGCAGGTCCCAGCCCGCGG 531 * * consensus_13017#0 TTTTGTAGTA-GCGTCAGCTTCCGTTTGTCTGAGTTCTGGTATCTGTATCG--TTATGTT 1652 consensus_13017#2 TTTTGTAGTA-GCGTCAGCTTCCGTTTGTCTGAGTTCTGGTATCTGTATCG--TTATGTT 559 consensus_13017#3 GTTGGCATCA-TTCATAAGAACCAT---GCTGAGAG-TATAACTTCTTTCA--TTAAGGA 536 consensus_13017#4 -TTGGCGANGCGCGGTGGGGGCGGCGAGTCGGAGTCGGAGAATTAAGGAAG--AGGAGGA 353 consensus_13017#1 GAGAGTGCGA-GAGATTGTACCGACCGGCGCGCGCCTGCGTGTGGGGCAAGCCAGATATT 590 * * * * consensus_13017#0 GGTTGCTGACTACATTCTGTTAGATGATCCGGAACTCTTTGACATTTCTGGGAAAGATGC 1712 consensus_13017#2 GGTTGCTGACTACATTCTGTTAGATGATCCGGAACTCTTTGACATTTCTGGGAAAGATGC 619 consensus_13017#3 GAGTGTTGATGAGGA---GCTGAAGGATGCAGACTCATCTAAGGCTTCTCAGAAGAAGAG 593 consensus_13017#4 GAA-GCGGAGGGGCAA--GGCGGGGGAAAAGAAGCTTCANAA------------------ 392 consensus_13017#1 TATCGCGGGCGGTCGCGTAGGGCGGGTTCTCTTGCCGCGCGCGTGCCCCGCGGTCTCTCA 650 * * * consensus_13017#0 TTCAGTACTTGCCGTTTGTTTGTCATCAAGGTTGCCATGATTGGTCATG 1761 consensus_13017#2 TTCAGTACTTGCCGTTTGTTTGTCATCAAGGTTGCCATGA--------- 659 consensus_13017#3 GCT--CACCT--------------------------------------- 601 consensus_13017#4 ------------------------------------------------- consensus_13017#1 GCGCTTGTTGTGACTCGTAGCAGGGAGTTGCTCGAGGGTGTTGGGT--- 696 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||