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Oryza sativa
cluster # 13032 cluster # 13032       Sequences # 12       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13032#0 length = 786 sequences # 12  

consensusID : consensus_13032#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 786
fasta sequence
                              [TTTTTGACTAAAAACAAAAGTGAAATTATTGCGGGACCCCAACTGACAGAACATGTGAGTAATCAAGGATAAATGAAAAACGCGCAAACCAACGCCACATGGCTAAAAACTTCCGCTATAAATCAGTGGTGCCTTGCACTTGCACACTCCATCTCCAACTCTCCAAGCCAGCCCAGCAGCACTCTCCTTCTCCAGGCTCCAGCAAACACACAAACCACGGAACCACCACCACCACCAGCAGCAGCAACAGCAGCAGCTCAGAGGAGAGGAGAAGAGCAAGTTAAAACAACTTACAAGCAATGGAGTACAGCTATCCCTGCAACAGCTGCAGCTGCAACAA-GGAGAAGAGGCCTCCGCTGAAGAGGGGGCAGCTCAAGCTGCAGATCGCCAAGGCCCTGGGCAGCCTCGTGGTGCCCGGAAAGAACAGGGATCACAGCTTCAG-GAGATGAGCGTCGTGGTGCCCCGGAGGCAAGAACTGGGAGCCACAGCTCAACAC-TTGAGCAGCAGCGCCTGCAAAC-TGA-TGGAAGTTCTGGTGTACTACGGTGGTGGGCATAGGAA-TTGTGCATAGTT--GTTGGTGTGTAGTTTTCCCCCCTTTCCGCCCCGTAGCGTATGGCTTGAGACTTCGAGAGTATCTCGCTTCCTCGGCAATTGCTTTGTTCTTGAGTGAAGAAATAGTTAGGGAGAGACTCGGAGGTGTGTTCCTGGCAGTCTCATGTCTGGTTTGGTAATGTACTGATGTGCAGCATAATTTTGATGGTAATGAGAGTGTTATTAGTACTTCAAAAA]

[+] EMBL CF329782             [TTTTTGACTAAAAACAAAAGTGAAATTATTGCGGGACCCCAACTGACAGAACATGTGAGTAATCAAGGATAAATGAAAAACGCGCAAACCAACGCCACATGGCTAAAAACTTCCGCTATAAATCAGTGGTGCCTTGCACTTGCACACTCCATCTCCAACTCTCCAAGCCAGCCCAGCAGCACTCTCCTTCTCCAGGCTCCAGCAAACACACAAACCACGGAACCACCACCACCACCAGCAGCAGCAACAGCAGCAGCTCAGAGGAGAGGAGAAGAGCAAGTTAAAACAACTTACAAGCAATGGAGTACAGCTATCCCTGCAACAGCTGCAGCTGCAACAA GGAGAAGAGGCCTCCGCTGAAGAGGGGGCAGCTCAAGCTGCAGATCGCCAAGGCCCTGGGCAGCCTCGTGGTGCCCGGAAAGAACAGGGATCACAGCTTCAG GAGATGAGCGTCGTGGTGCCCCGGAGGCAAGAACTGGGAGCCACAGCTCAACAC TTGAGCAGCAGCGCCTGCAAAC TGA TGGAAGTTC                                                                                                                                                                                                                                                                   ]
[+] EMBL AU057116             [                                                                                                                                                                              AGCAGCACTCTCCTTCTCCAGGCTCCAGCAAACACACAAACCACGGAACCACCACCACCACCAGCAGCAGCAACAGCAGCAGCTCAGAGGAGAGGAGAAGAGCAAGTTAAAACAACTTACAAGCAATGGAGTACAGCTATCCCTGCAACAGCTGCAGCTGCAACAA GGAGAAGAGGCCTCCGCTGAAGAGGGGGCAGCTCAAGCTGCAGATCGCCAAGGCCCTGGGCAGCCTCGTGGTGCCCGGAAAGAACAGGGATCACAGCTTCAG GAGATGAGCGTCGTGGTGCCCCGGAGGCAAGAACTGGGAGCCACAGCTCAACAC TTGAGCAGCAGCGCCTGCAAAC TGA TGGAAGTTCTGGTGTACTACGGTGGTGGGCATAGGAA TTGTGCATAGTT  GTTGGTGTGTAGTTTTCCCCCCTTTCCGCCCCGTAGCGTATGGCTTGAGACTTCGAGAGTATCTCGCTTCCTCGGCAATTGCTTTGTTCTTGAGTGAAGAAATAGTTAGGGAGAGACTCGGAGGTGTGTTCCTGGCAGTCTCATGTCTGGTTTGGTAATGTACTGATGTGCAGCATAATTTTGATGGTAATGAGAGTGTTATTAGTACTTCA    ]
[+] EMBL AU058185             [                                                                                                                                                                               GCAGCACTCTCCTTCTCCAGGCTCCAGCAAACACACAAACCACGGAACCACCACCACCACCAGCAGCAGCAACAGCAGCAGCTCAGAGGAGAGGAGAAGAGCAAGTTAAAACAACTTACAAGCAATGGAGTACAGCTATCCCTGCAACAGCTGCAGCTGCAACAA GGAGAAGAGGCCTCCGCTGAAGAGGGGGCAGCTCAAGCTNCAGATCGCCAAGGCCCTGGGCAGCCTCGTGGTGCCCGGAAAGAACAGGGATCACAGCTTCAG GAGATGAGCGTCGTGGTGCCCCGGAGGCAAGAACTGGGAGCCACAGCTCAACAC TTGAGCAGCAGCGCCTGCAAACTTGA TGGAAGTTCTGGTGTA                                                                                                                                                                                                                                                            ]
[+] EMBL C74773               [                                                                                                                                                                                        nCCTTCTCCAGGCNCCAGCAAACACACAAACCACGGAACCACCACCACCACCAGCAGCAGCAACAGCAGCAGCTCAGAGGAGAGGAGAAGAGCAAGTTAAAACAACTTACAAGCAATGGAGTACAGCTATCCCTGCAACAGCTGCAGCTGCAACAA GGAGAAGAGGCCTCCGCTGAAGAGGGGGCAGCTCAAGCTGCAGATCGCCAAGGCCCTGGGCAGCCTCGTGGTGCCCGGAAAGAACAGGGATCACAGCTTCAG GAGATGAGCGTCGTGGTGCCCCGGAGGCAAGAACTGGGAGCCACAGCTCAACAC TTGAGCAGCAGCGCCTGCAAAC TGA TGG ANTTCTGGTGT CTACGGTGGTGGGCATAGG A TTGTGCATANTT  GTTGG                                                                                                                                                                                                                   ]
[+] EMBL C73251               [                                                                                                                                                                                                                         CGGAACCACCACCACCACCAGCAGCAGCAACAGCAGCAGCTCAGAGGAGAGGAGAAGAGCAAGTTAAAACAACTTACAAGCAATGGAGTACAGCTATCCCTGCAACAGCTGCAGCTGCAACAA GGAGAAGAGGCCTCCGCTGAAGAGGGGGCAGCTCAAGCTGCAGATCGCCAAGGCCCTGGGCAGCCTCGTGGTGCCCGGAAAGAACAGGGNTCACAGCTTCAG GAGATGAGCGTCGTGGTGCCCCGGAGGCAAGAACTGGGAGCCACAGCTCAACACTTTGAGCAGCAGCGNCTGCAAAC TGATTGGAAGTTCTGGTGTACTACGGTGGTGGGCATAGGAATTTTTGCATAGTTTNTTTGGTGTGTAGTTTTNCCCCCTTTCCGCCCCGTAGCGTATTGGTTt                                                                                                                                                                         ]
[+] EMBL AU094172             [                                                                                                                                                                                                                          GGAACCACCACCACCACCAGCAGCAGCANCAGCAGCAGCTCAGAGGAGAGGAGAAGAGCAAGTTAAAACAACTTACAAGCAATGGAGTACAGCTATCCCTGCAACAGCTGCAGCTGCAACAA GGAGAAGAGGCCTCCGCTGAAGAGGGGGCAGCTCAAGCTGCAGATCGCCAAGGCCCTGGGCAGCCTCGTGGTGCCCGGAAAGAACAGGGATCACAGCTTCAG GAGATGAGCGTCGTGGTGCCCCGGAGGCAAGAACTGGGAGCCACAGCTCAACAC TTGAGCAGCAGCGCCTGCAAAC TGA TGGAAGTTCTGGTGTACTACGGTGGTGGGCATAGGAA TTGTGCATAGTT  GTTGGTGTGTAGTTTTCCCCCCTTTCCGCCCCGTAGCGTATGGCTTGAGACTTCGAGAGTATCTCGCTTCCTCGGCAATTGCTTTGTTCTTGAGTGAAGAAATAGTTAGGGAGAGACTCGGAGGTGTGTTCCTGGCAGTCTCATGTCTGGTTTGGTAATGTACTGATGTGCAGCATAATTTTGATGGTAATGAGAGTGTTATTAGTAaaaaa    ]
[-] EMBL CB965167             [                                                                                                                                                                                                                          GGAACCACCACCACCACCAGCAACAGCAACAGCAGCAGCTCAGAGGAGAGGAGAAGAGCAAGTTAAAACAACTTACAAGCAATGGAGTACAGCTATCCCTGCAACAGCTGCAGCTGCAACAA GGAGAAGAGGCCTCCGCTGAAGAGGGGGCAGCTCAAGCTGCAGATCGCCAAGGCCCTGGGCAGCCTCGTGGTGCCCGGAAAGAACAGGGATCACAGCTTCAG GAGATGAGCGTCGTGGTGCCCCGGAGGCAAGAACTGGGAGCCACAGCTCAACAC TTGAGCAGCAGCGCCTGCAAAC TGA TGGAAGTTCTGGTGTACTACGGTGGTGGGCATAGGAA TTGTGCATAGTT  GTTGGTGTGTAGTTTTCCCCCCTTTCCGCCCCGTAGCGTATGGCTTGAGACTTCGAGAGTATCTCGCTTCCTCGGCAATTGCTTTGTTCTTGAGTGAAGAAATAGTTAGGGAGAGACTCGGAGGTGTGTTCCTGGCAGTCTCATGTCTGGTTTGGTAATGTACTGATGTGCAGCATAATTTTGATGGTAATGAGAGTGTTATTA            ]
[-] EMBL CF329783             [                                                                                                                                                                                                                                              CAGCAGCAACAGCAGCAGCTCAGAGGAGAGGAGAAGAGCAAGTTAAAACAACTTACAAGCAATGGAGTACAGCTATCCCTGCAACAGCTGCAGCTGCAACAA GGAGAAGAGGCCTCCGCTGAAGAGGGGGCAGCTCAAGCTGCAGATCGCCAAGGCCCTGGGCAGCCTCGTGGTGCCCGGAAAGAACAGGGATCACAGCTTCAG GAGATGAGCGTCGTGGTGCCCCGGAGGCAAGAAATGGGAGCCACAGCTCAACAC TTGAGCAGCAGCGCCTGCAAAC TGA TGGAAGTTCTGGTGTACTACGGTGGTGGGCATAGGAA TTGTGCATAGTT  GTTGGTGTGTAGTTTTCCCCCCTTTCCGCCCCGTAGCGTATGGCTTGAGACTTCGAG                                                                                                                                                               ]
[+] EMBL AU078235             [                                                                                                                                                                                                                                                                                                                                              CAACAAGGGAGAAGAGCCCTCCGCTGAAGAGGGGNCAGCTCAAGCTGCAGATCGCCAAGGCCCTGGGCAGCCTCGTGGTGCCCGGAAAGAACAGGGATCACAGCTTCAG GAGATGAGCGTCGTGGTGCCCCGGAGGCAAGAACTGGGAGCCACAGCTCAACAC TTGAGCAGCAGCGCCTGCAAAC TGA TGGAAGTTCTGGTGTACTACGGTGGTGGGCATAGGAA TTGTGCATAGTT  GTTGGTGTGTAGTTTTCCCCCCTTTCCGCCCCGTAGCGTATGGCTTGAGACTTCGAGAGTATCTCGCTTCCTCGGCAATTGCTTTGTTCTTGAGTGAAGAAATAGTTAGGGAGAGACTCGGAGGTGTGTTCCTGGCAGTCTCATGTCTGGTTTGGTAATGTACTGATGTGCAGCATAATTTTGATGGTAATGAGAGTGTTATTAGTACTTCAAAAA]
[+] EMBL AK063898             [                                                                                                                                                                                                                                                                                                                                                                                          CTGCAGATCGCCAAGGCCCTGGGCAGCCTCGTGGTGCCCGGAAAGAACAGGGATCACAGCTTCAG GAGATGAGCGTCGTGGTGCCCCGGAGGCAAGAACTGGGAGCCACAGCTCAACAC TTGAGCAGCAGCGCCTGCAAAC TGA TGGAAGTTCTGGTGTACTACGGTGGTGGGCATAGGAA TTGTGCATAGTT  GTTGGTGTGTAGTTTTCCCCCCTTTCCGCCCCGTAGCGTATGGCTTGAGACTTCGAGAGTATCTCGCTTCCTCGGCAATTGCTTTGTTCTTGAGTGAAGAAATAGTTAGGGAGAGACTCGGAGGTGTGTTCCTGGCAGTCTCATGTCTGGTTTGGTAATGTACTGATGTGCAGCATAATTTTGATGGTAATGAGAGTGTT                ]
[+] EMBL AU076196             [                                                                                                                                                                                                                                                                                                                                                                                                                                               TCACAGCTTCAGAGAGATGAGCGTCGTGGTGCCCCGGAGGCAAGAACTGGGAGCCACAGCTCAACAC TTGAGCAGCAGCGCCTGCAAAC TGA TGGAAGTTCTGGTGTACTACGGTGGTGGGCATAGGAA TTGTGCATAGTT  GTTGGTGTGTAGTTTTCCCCCCTTTCCGCCCCGTAGCGTATGGCTTGAGACTTCGAGAGTATCTCGCTTCCTCGGCAATTGCTTTGTTCTTGAGTGAAGAAATAGTTAGGGAGAGACTCGGAGGTGTGTTCCTGGCAGTCTCATGTCTGGTTTGGTAATGTACTGATGTGCAGCATAATTTTGATGGTAATGAGAGTGTTATTAGTACTT      ]
[+] EMBL AU031132             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GTGNTGGGCATAGGAA TTGTGCATAGTT  GTTGGTGTGTNGTTTTCCCCCNTTTCCGCCCCGTNGCGTATGGCTTGAGACTTCGAGNGTATCTCGCTTCCTCGGCAATTGCTTTGTTCTTGAGTGAAGAAATAGTTAGGGAGAGACTCGGNGGTGTGTTCCTGGCAGTCTCATGTCTGGTTTGGTAATGTACTGATGTGCAGCATAATTTTGATGGTAATGAGNGTGTTATTNGTAAAAAAAAAA]


>consensus_13032#0 TTTTTGACTAAAAACAAAAGTGAAATTATTGCGGGACCCCAACTGACAGAACATGTGAGT AATCAAGGATAAATGAAAAACGCGCAAACCAACGCCACATGGCTAAAAACTTCCGCTATA AATCAGTGGTGCCTTGCACTTGCACACTCCATCTCCAACTCTCCAAGCCAGCCCAGCAGC ACTCTCCTTCTCCAGGCTCCAGCAAACACACAAACCACGGAACCACCACCACCACCAGCA GCAGCAACAGCAGCAGCTCAGAGGAGAGGAGAAGAGCAAGTTAAAACAACTTACAAGCAA TGGAGTACAGCTATCCCTGCAACAGCTGCAGCTGCAACAAGGAGAAGAGGCCTCCGCTGA AGAGGGGGCAGCTCAAGCTGCAGATCGCCAAGGCCCTGGGCAGCCTCGTGGTGCCCGGAA AGAACAGGGATCACAGCTTCAGGAGATGAGCGTCGTGGTGCCCCGGAGGCAAGAACTGGG AGCCACAGCTCAACACTTGAGCAGCAGCGCCTGCAAACTGATGGAAGTTCTGGTGTACTA CGGTGGTGGGCATAGGAATTGTGCATAGTTGTTGGTGTGTAGTTTTCCCCCCTTTCCGCC CCGTAGCGTATGGCTTGAGACTTCGAGAGTATCTCGCTTCCTCGGCAATTGCTTTGTTCT TGAGTGAAGAAATAGTTAGGGAGAGACTCGGAGGTGTGTTCCTGGCAGTCTCATGTCTGG TTTGGTAATGTACTGATGTGCAGCATAATTTTGATGGTAATGAGAGTGTTATTAGTACTT CAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)