These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13051#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 2651 fasta sequence [CCACCGCCGCCCGCCACCTCGCCGCCGACCAGACGAGCCGCCGTTTGACCCAACACCGAGCTCCCGCGCGGAGTTGATGTCCATCTCCCCTTCCGAATCCACCAGAGGATCCCAGCCGCTCGCGCCGCGCCATTCCAACCCTAGCCCCGGACCCCGCCATGGCAACAGCTCCGCCCCACCGCGCCGCCGCGGCCGACGCTCCCCTACGGCTCCCGTCTCACCGCCCTCAGCCGCCGGCGGGAGCGGCGGCCCGAGCTCCGTCTCGGTGGTTCCAGCTATCAGAGAATATGTTGATACTTCCCAAAAGGTAGTTGGATTCAGAATCTCTAGAGAAGAGAATGATGATTCATATACCCAAGAAGTTGGCAATTTTTCTGAATGCCACTCTTCTGAACATGGGAATTCAGGTTTTTCAGCCAATAATGGCACCTCAGGCCAGGCAACTCCTCAGAGACCTGAATTGATGGAATCCCTGAAGATTGATCTATCCACTACAAATTCTAGTGGGAATGGTACTCAGGTGACTGCTAGAAAGAATCAGTCTGTAAATGCCAATTATCTGCTGAATTTCCACTATGATCCAATTTCTCGGCCACAGCCTAGAGGCCCCAGAACATATCCTACAAGAAGACAGAGGAAGATCAGACCATACAACAAAGATTTGTTCCTACAAGCAAATTTTAAGTTTGTTGTGTTGGATACTGGAAGCTATGAAATAGAATTAATGGATCCAGATAAGATGCTCCAGTGGGAAGATATTGTATGTGTAAGATATTATAGCCCTTGTGAGGTGCAATGCCCTATTTGCTTGGAGAGCCCATTGTGCCCACAGATTACATCATGTGGTCATATATATTGCTTTCCATGCATTTTACGTTATTTACTTATGGGAAAAGAAGATTACAAAGGTGAAAGCTGGAAGAAGTGCCCACTGTGTTTCATGATGATCTCAACAAAGGAGTTGTATACAATCTATATTACTCAAGTCCAGCATTTTCATGTTGGTGACAATGTGACATTTACACTTTTGAGCCGCTCAAAAAATTCACTCACTCCTTCTATTAAGAACCTCACTGATGAATCTACTATAGACGAAGATCCTTGCAGTGCATTCTCCAAGTTCATTTTGACGTCTGATGTGGAACTTTCTGTTAGAGAGGCAAAAACAGATCTTGTTAATTGGTTGCATATGGCAGATTTAGGCCTTGTGGGTGACTTGGAGAAACTTCCATACGTTTCTACCGCTTTGGAGCAGCTAGAAGAACGGATGAAATATTGGAGTGAGTACAGAAATTTTAGTGTCAGCCCTCCCCTAAAAGACAGCTTCTCACCTGTAACTAGTTCCAAATCAAGGAACCCTAATAATGCACAATCTTCACGCCAGAACAGTGAACACAAGCTATCTCCTCTATCAGATGAAGATATGATTGCTGGTGTTTCGGAGCTCTGTATTTCACCTGAATCAAATAAAATCTTTAATAAAGGAATGCCATCGAAAACAGAAGAGAGATGTATGGCTCCCATAGATTCAAATGAGAATGATACTTATAATTTTTACCAGGTATCTGATGGCCAACACCTAATTCTTCATCCGCTAAACATGAAATGCCTTATAAACCATTATGGAAGTTCTGATATGCTCCCACCAAGAATACATGGAAAAATCTTGGAGCTAGAAACTGTAACACAATCCGAAGCTACAAGAAAGCGCTATCGTTATCTAAGTCACTTCTCATTGACAACAACGTTCCAGTTCTGTGAAATTGACCTGGGTGATATGCTGCCTCCTAGCTCATTAGCTCCATTCATGGATGAAATCAAGAAGCGAGAGAAACAGAGGAAACGAACTGCCAAGAAGGAAGAAAGCGATAGAGTGAAAGCCGAAGTTGCTGCTGCTGCACAGGCATCTGCAATGCTGTTTGAACATACAAGCTTCTCTCCCAGTAGTGGGCCACATGGCGATTTTATGTTCTCTCTGGATGACTTTGAAGCTCTTGGAAACAATGCTGGACCCTCCACGAGTCCACCAGCCAGCGAAAGAAAGCTTTTCTCCGATGTTGCACGGCTTGGCTTTGCGTCTGCCCAAGACTCGCCTCCTCTAAGAGTTGAATCTGGGGATTTGACTGGCAAAAGTGAAAGCACGGGGGAACAAGGGCCAGCCGCAACACCCGCATTATCCTTTGCCAGCAT-CA-TTTCC-TCCAC-TAGAGCGTCAGA-CAATAGCCT-GGACACGCA--CAAACCAAATGTA-GTCGGGAAG-AAAGGCAAGAAACCCACCAAAGTGCT-CTT-GTCCAC-TGGCGGT-GGCCGCCGATAC-TGAAGGAAGAGTGACACT-GGAATGG--AAGCAGTTG-CCAGTT-GGCTG--TTTCCTA-TAAG-CAG-TGT-GTATAGTGCATAACCTGGACTTCACATCTGTAACACTCC-CAAGTC-CCAAGTAGC-AGC-TTTTTCTC-CCATGTGGTTTGATCTAAATCGCCTGACTGTTTTAGAAGG-TTTTTACTGTGTATCTACATC-CTGA-CCCATGCT-AAGGGAGTAAGGGTGACTGCCCTGTCGCAAAATGAGAAGAGCTATGTAAAATTTGATAAATAATGATGCTAAGGATCATGCGCAATACTTTGCTCAATGTACGTCGACGAGTTGATCCGTCATAGGCTGATACAGCCTGCTGT] [+] EMBL AK068618 [CCACCGCCGCCCGCCACCTCGCCGCCGACCAGACGAGCCGCCGTTTGACCCAACACCGAGCTCCCGCGCGGAGTTGATGTCCATCTCCCCTTCCGAATCCACCAGAGGATCCCAGCCGCTCGCGCCGCGCCATTCCAACCCTAGCCCCGGACCCCGCCATGGCAACAGCTCCGCCCCACCGCGCCGCCGCGGCCGACGCTCCCCTACGGCTCCCGTCTCACCGCCCTCAGCCGCCGGCGGGAGCGGCGGCCCGAGCTCCGTCTCGGTGGTTCCAGCTATCAGAGAATATGTTGATACTTCCCAAAAGGTAGTTGGATTCAGAATCTCTAGAGAAGAGAATGATGATTCATATACCCAAGAAGTTGGCAATTTTTCTGAATGCCACTCTTCTGAACATGGGAATTCAGGTTTTTCAGCCAATAATGGCACCTCAGGCCAGGCAACTCCTCAGAGACCTGAATTGATGGAATCCCTGAAGATTGATCTATCCACTACAAATTCTAGTGGGAATGGTACTCAGGTGACTGCTAGAAAGAATCAGTCTGTAAATGCCAATTATCTGCTGAATTTCCACTATGATCCAATTTCTCGGCCACAGCCTAGAGGCCCCAGAACATATCCTACAAGAAGACAGAGGAAGATCAGACCATACAACAAAGATTTGTTCCTACAAGCAAATTTTAAGTTTGTTGTGTTGGATACTGGAAGCTATGAAATAGAATTAATGGATCCAGATAAGATGCTCCAGTGGGAAGATATTGTATGTGTAAGATATTATAGCCCTTGTGAGGTGCAATGCCCTATTTGCTTGGAGAGCCCATTGTGCCCACAGATTACATCATGTGGTCATATATATTGCTTTCCATGCATTTTACGTTATTTACTTATGGGAAAAGAAGATTACAAAGGTGAAAGCTGGAAGAAGTGCCCACTGTGTTTCATGATGATCTCAACAAAGGAGTTGTATACAATCTATATTACTCAAGTCCAGCATTTTCATGTTGGTGACAATGTGACATTTACACTTTTGAGCCGCTCAAAAAATTCACTCACTCCTTCTATTAAGAACCTCACTGATGAATCTACTATAGACGAAGATCCTTGCAGTGCATTCTCCAAGTTCATTTTGACGTCTGATGTGGAACTTTCTGTTAGAGAGGCAAAAACAGATCTTGTTAATTGGTTGCATATGGCAGATTTAGGCCTTGTGGGTGACTTGGAGAAACTTCCATACGTTTCTACCGCTTTGGAGCAGCTAGAAGAACGGATGAAATATTGGAGTGAGTACAGAAATTTTAGTGTCAGCCCTCCCCTAAAAGACAGCTTCTCACCTGTAACTAGTTCCAAATCAAGGAACCCTAATAATGCACAATCTTCACGCCAGAACAGTGAACACAAGCTATCTCCTCTATCAGATGAAGATATGATTGCTGGTGTTTCGGAGCTCTGTATTTCACCTGAATCAAATAAAATCTTTAATAAAGGAATGCCATCGAAAACAGAAGAGAGATGTATGGCTCCCATAGATTCAAATGAGAATGATACTTATAATTTTTACCAGGTATCTGATGGCCAACACCTAATTCTTCATCCGCTAAACATGAAATGCCTTATAAACCATTATGGAAGTTCTGATATGCTCCCACCAAGAATACATGGAAAAATCTTGGAGCTAGAAACTGTAACACAATCCGAAGCTACAAGAAAGCGCTATCGTTATCTAAGTCACTTCTCATTGACAACAACGTTCCAGTTCTGTGAAATTGACCTGGGTGATATGCTGCCTCCTAGCTCATTAGCTCCATTCATGGATGAAATCAAGAAGCGAGAGAAACAGAGGAAACGAACTGCCAAGAAGGAAGAAAGCGATAGAGTGAAAGCCGAAGTTGCTGCTGCTGCACAGGCATCTGCAATGCTGTTTGAACATACAAGCTTCTCTCCCAGTAGTGGGCCACATGGCGATTTTATGTTCTCTCTGGATGACTTTGAAGCTCTTGGAAACAATGCTGGACCCTCCACGAGTCCACCAGCCAGCGAAAGAAAGCTTTTCTCCGATGTTGCACGGCTTGGCTTTGCGTCTGCCCAAGACTCGCCTCCTCTAAGAGTTGAATCTGGGGATTTGACTGGCAAAAGTGAAAGCACGGGGGAACAAGGGCCAGCCGCAACACCCGCATTATCCTTTGCCAGCAT CA TTTCC TCCAC TAGAGCGTCAGA CAATAGCCT GGACACGCA CAAACCAAATGTA GTCGGGAAG AAAGGCAAGAAACCCACCAAAGTGCT CTT GTCCAC TGGCGGT GGCCGCCGATAC TGAAGGAAGAGTGACACT GGAATGG AAGCAGTTG CCAGTT GGCTG TTTCCTA TAAG CAG TGT GTATAGTGCATAACCTGGACTTCACATCTGTAACACTCC CAAGTC CCAAGTAGC AGC TTTTTCTC CCATGTGGTTTGATCTAAATCGCCTGACTGTTTTAGAAGGTTTTTTACTGTGTATCTACATC CTGA CCCATGCT AAGGGAGTAAGGGTGACTGCCCTGTCGCAAAATGAGAAGAGCTATGTAAAATTTGATAAATAATGATGCTAAGGATCATGCGCAATACTTTGCTCAATGTACGTCGACGAGTTGATCCGTCATAGGCTGATACAGCCTGCTGT] [+] EMBL CB685449 [ CCCTCTTCCGCCGGCGGGAGCGGCGGCCCGAGCTCCGTCTCGGTGGTTCCAGCTATCAGAGAATATGTTGATACTTCCCAAAAGGTAGTTGGATTCAGAATCTCTAGAGAAGAGAATGATGATTCATATACCCAAGAAGTTGGCAATTTTTCTGAATGCCACTCTTCTGAACATGGGAATTCAGGTTTTTCAGCCAATAATGGCACCTCAGGCCAGGCAACTCCTCAGAGACCTGAATTGATGGAATCCCTGAAGATTGATCTATCCACTACAAATTCTAGTGGGAATGGTACTCAGGTGACTGCTAGAAAGAATCAGTCTGTAAATGCCAATTATCTGCTGAATTTCCACTATGATCCAATTTCTCGGCCACAGCCTAGAGGCCCCAGAACATATCCTACAAGAAGACAGAGGAAGATCAGACCATACAACAAAGATTTGTTCCTACAAGCAAATTTTAAGTTTGTTGTGTTGGATACTGGAAGCTATGAAATAGAATTAATGGATCCAGATAAGATGCTCCAGTGGGAAGATATTGTATGTGTAAGATATTATAGCCCTTGTGAGGTGCAATGCCCTATTTGCTTGGAGAGCCCATTGTGCCCACAGATTACATCATGTGGTCATATATATTGCTTTCCATGCATTTTACGTTATTTACTTATGGGAAAAGAAGATTACAAAGGTGAAAGCTGGAAGAAGTGCCCACTGTGTTTCATGATGATCTCCACAAAGGAGTTGTATAC ] [+] EMBL AK058519 [ ATTTTCATGTTGGTGACAATGTGACATTTACACTTTTGAGCCGCTCAAAAAATTCACTCACTCCTTCTATTAAGAACCTCACTGATGAATCTACTATAGACGAAGATCCTTGCAGTGCATTCTCCAAGTTCATTTTGACGTCTGATGTGGAACTTTCTGTTAGAGAGGCAAAAACAGATCTTGTTAATTGGTTGCATATGGCAGATTTAGGCCTTGTGGATGACTTGGAGAAACTTCCATACGTTTCTACCGCTTTGGAGCAGCTAGAAGAACGGATGAAATATTGGAGTGAGTACAGAAATTTTAGTGTCAGCCCTCCCCTAAAAGACAGCTTCTCACCTGTAACTAGTTCCAAATCAAGGAACCCTAATAATGCACAATCTTCACGCCAGAACAGTGAACACAAGCTATCTCCTCTATCAGATGAAGATATGATTGCTGGTGTTTCGGAGCTCTGTATTTCACCTGAATCAAATAAAATCTTTAATAAAGGAATGCCATCGAAAACAGAAGAGAGATGTATGGCTCCCATAGATTCAAATGAGAATGATACTTATAATTTTTACCAGGTATCTGATGGCCAACACCTAATTCTTCATCCGCTAAACATGAAATGCCTTATAAACCATTATGGAAGTTCTGATATGCTCCCACCAAGAATACATGGAAAAATCTTGGAGCTAGAAACTGTAACACAATCCGAAGCTACAAGAAAGCGCTATCGTTATCTAAGTCACTTCTCATTGACAACAACGTTCCAGTTCTGTGAAATTGACCTGGGTGATATGCTGCCTCCTAGCTCATTAGCTCCATTCATGGATGAAATCAAGAAGCGAGAGAAACAGAGGAAACGAACTGCCAAGAAGGAAGAAAGCGATAGAGTGAAAGCCGAAGTTGCTGCTGCTGCACAGGCATCTGCAATGCTGTTTGAACATACAAGCTTCTCTCCCAGTAGTGGGCCACATGGCGATTTTATGTTCTCTCTGGATGACTTTGAAGCTCTTGGAAACAATGCTGGACCCTCCACGAGTCCACCAGCCAGCGAAAGAAAGCTTTTCTCCGATGTTGCACGGCTTGGCTTTGCGTCTGCCCAAGACTCGCCTCCTCTAAGAGTTGAATCTGGGGATTTGACTGGCAAAAGTGAAAGCACGGGGGAACAAGGGCCAGCCGCAACACCCGCATTATCCTTTGCCAGCAT CA TTTCC TCCAC TAGAGCGTCAGA CAATAGCCT GGACACGCA CAAACCAAATGTA GTCGGGAAG AAAGGCAAGAAACCCACCAAAGTGCT CTT GTCCAC TGGCGGT GGCCGCCGATAC TGAAGGAAGAGTGACACT GGAATGG AAGCAGTTG CCAGTT GGCTG TTTCCTA TAAG CAG TGT GTATAGTGCATAACCTGGACTTCACATCTGTAACACTCC CAAGTC CCAAGTAGC AGC TTTTTCTC CCATGTGGTTTGATCTAAATCGCCTGACTGTTTTAGAAGG TTTTTACTGTGTATCTACATC CTGA CCCATGCT AAGGGAGTAAGGGTGACTGCCCTGTCGCAAAATGAGAAGAGCTATGTAAAATTTGATAAATAATGATGCTAAG ] [+] EMBL AU164829 [ CCAGTAGTGGGCCACATGGCGATTTTATGTTCTCTCTGGATGACTTTGAAGCTCTTGGAAACAATGCTGGACCCTCCACGAGTCCACCAGCCAGCGAAAGAAAGCTTTTCTCCGATGTTGCACGGCTTGGCTTTGCGTCTGCCCAAGACTCGCCTCCTCTAAGAGTTGAATCTGGGGATTTGACTGGCAAAAGTGAAAGCACGGGGGAACAAGGGCCAGCCGNAACACCCGCATTATCCTTTGCCAGCAT CA TTTCC TCCAC TAGANCGTCAGA CAATAGCCT GGACACGCA CAAACCAAATGTA GTCGGGAAG AAAGGCAAGAAACCCACCAAAGTGCT CTTGGTCCACTTGGNGGTGGGCCGNCGATACTTGAAGGAAGAGTGACACTGGGAATGGGAAAGCAGTTGCCCANTTGGGCTGGTTTTCCTATTAAGCCAGTTGTGGTATAGgtg ] [-] EMBL CB685450 [ TGGACCCTCCACGAGTCCACCACCCAGGGAAAGAAAGCTTTTCTCCGATGTTGCCCGGCTTGGCTTTGTGTCTGCCCAAGACTCGCCTCTTCTAAGAGTTGAATATGGGGATTTGACTGGCAAAAGTGAAAGCACGGGGGACCAAGGGCCAGCCGCAACACCCGCATTATCCTTTGCCAGCAT CA TTTCC TCCAA TAGAGCGTCAGA CAATAGTCT GGACACGCA CAAACCAAATGTA GTCGGGAAG AAAGGCAAGAAACCCACCAAAGTGCT CTT GTCCAC TGGCGGT GGCCCCCGATAC TGAAGGAAGAGTGACACT GGAATGG AAGCAGTTG CCAGTT GGCTG TTTCCTA TAAG CAG TGT GTTTAGTGCATATCCTGGACTTCACATTTGTAACACTCCTCAAGTCGCCAAGTAGC AGC TTTTTCTC CCATGTGGTTTGATTTAAATCGCCTGGCTGTTTTAGAAGG TTTTTACTGTGTATCTTCATC CTGA CCCATGCT AAGGGAGTAAGGGTGACTGCCCTGTCGCAAAATGAGAAGAGCTATGTAAAATTTGATAAATAATGATGCTAAGGATCATGCGCAATACTTTGCTCAATGTTCGTCGAAAGGGTGATC ] [-] EMBL CB640591 [ CTGGCAAAAGTGAAAGCACGGGGGAACAAGGGCCAGCCGCAACACCCGCATTATCCTTTGCCAGCAT CA TTTCC TCCAC TAGAGCGTCAGA CAATAGCCT GGACACGCA CAAACCAAATGTA GTCGGGAAG AAAGGCAAGAAACCCACCAAAGTGCT CTT GTCCAC TGGCGGT GGCCGCCGATAC TGAAGGAAGAGTGACACT GGAATGG AAGCAGTTG CCAGTT GGCTG TTTCCTA TAAG CAG TGT GTATAGTGCATAACCTGGACTTCACATCTGTAACACTCC CAAGTC CCAAGTAGC AGC TTTTTCTCNCCATGTGGTTTGATCTAAATCGCCTGACTGTTTTAGAAGG TTTTTACTGTGTATCTACATC CTGA CCCATGCT AAGGGAGTAAGGGTGACTGCCCTGTCGCAAAATGAGAAGAGCTATGTAAAATTTGATAAATAATGATGCTAAGGATCATGCGCAATACTTT ] [+] EMBL AU031373 [ tgcCCAGCATCCATTTTCCNTCCACTTAGAGCGTCAGACCAATAGCCTGGGACACGCAATAAAACCCAATGTACGTCGGGAAGAAAAGGCAAGAAACCCA CAAAGTGCTCCTT GTCCAC TGGCGGT GGCCGCCGATAC TGAAGGAAGAGTGNCACT GGAATGG AAGCAGTTG NCAGTT GGCTG TTTCCTA TAAG CAG TGT GTATAGTGCATAACCTGGACTTCACATCTGTNACACTCC CAAGTC CCAAGTAGCAAGCTTTTTTCTC CCATGTGGTTTGATCTAAATCGCCTGACTGTTTTAGAAGG TTTTTACTGTGTATCTACATCTCTGACCCCATGCTAAAGGGAGTAAGGGTGACTGCCCTGTNGNAAAATGAGAAGAGCTATNTAAAATNNNATAAATAATGATGCTAAGGATCATGCGCAATACTTTGCTCAAaaaaaa ] consensusID : consensus_13051#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 442 fasta sequence [CAAAGTGCTCTTGTCCACTGGCGGTGGCCGCCGATACTGAAGGAAGAGTGACACTGGAATGGAAGCAGTTGCCAGTTGGCTGTTTCCTATAAGCAGTGTGTATAGTGCATAACCTGGACTTCACATCTGTAACACTCCCAAGTCCCAAGTAGCAGCTTTTTCTCCCATTTGGTTTGATCTAAATCGCCTGACTGTTTTAGAAGGTTTTTACTGTGTATCTACATCCTGACCCATGCTAAGGGAGTAAGGGTGACTGCCCTGTCGCAAAATGAGAAGAGCTATGTAAAATTTGATAAATAATCTTTGCTCAATGTACGTCGACGAGTTGATCCGTCATGGGCTGATACAGCCTGCTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BE040110 [CAAAGTGCTCTTGTCCACTGGCGGTGGCCGCCGATACTGAAGGAAGAGTGACACTGGAATGGAAGCAGTTGCCAGTTGGCTGTTTCCTATAAGCAGTGTGTATAGTGCATAACCTGGACTTCACATCTGTAACACTCCCAAGTCCCAAGTAGCAGCTTTTTCTCCCATTTGGTTTGATCTAAATCGCCTGACTGTTTTAGAAGGTTTTTACTGTGTATCTACATCCTGACCCATGCTAAGGGAGTAAGGGTGACTGCCCTGTCGCAAAATGAGAAGAGCTATGTAAAATTTGATAAATAATCTTTGCTCAATGTACGTCGACGAGTTGATCCGTCATGGGCTGATACAGCCTGCTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CA758117 [CAAAGTGCTCTTGTCCACTGGCGGTGGCCGCCGATACTGAAGGAAGAGTGACACTGGAATGGAAGCAGTTGCCAGTTGGCTGTTTCCTATAAGCAGTGTGTATAGTGCATAACCTGGACTTCACATCTGTAACACTCCCAAGTCCCAAGTAGCAGCTTTTTCTCCCATTTGGTTTGATCTAAATCGCCTGACTGTTTTAGAAGGTTTTTACTGTGTATCTACATCCTGACCCATGCTAAGGGAGTAAGGGTGACTGCCCTGTCGCAAAATGAGAAGAGCTATGTAAAATTTGATAAATAATCTTTGCTCAATGTACGTCGACGAGTTGATCCGTCATGGGCTGATACAGCCTGCTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_13051#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 355 fasta sequence [TACTGAAGGAAGAGTGACACTGGAATGGAAGCAGTTGCCAGTTAGCTGTTTCCTATAAGCAGTGTGTATAGTGCATAACCTGGACTTCACATCTGTAACACTCCCAAGTCCCAAGTAGCAGCTTTTCCTCCCATGCGGTTTGATCTAAATCGCCTGACTGTTTTAGAAGGTTTTTACTGTGTATCTACATCCTGACCCATGCTAAGGGAGTAAGGGTGACTGCCCTGTCGCAAAATGAGAAGAGCTATGTAAAATTTGATAAATAATGATGCTAAGGATCATGCGCAATACTTTGCTCAATGTAAAAAAAAAAAAAAAAACACTATCATGCCGTTACGTAGCGTATCGTTGACAG] [+] EMBL CF332344 [TACTGAAGGAAGAGTGACACTGGAATGGAAGCAGTTGCCAGTTAGCTGTTTCCTATAAGCAGTGTGTATAGTGCATAACCTGGACTTCACATCTGTAACACTCCCAAGTCCCAAGTAGCAGCTTTTCCTCCCATGCGGTTTGATCTAAATCGCCTGACTGTTTTAGAAGGTTTTTACTGTGTATCTACATCCTGACCCATGCTAAGGGAGTAAGGGTGACTGCCCTGTCGCAAAATGAGAAGAGCTATGTAAAATTTGATAAATAATGATGCTAAGGATCATGCGCAATACTTTGCTCAATGTAAAA ] [-] EMBL CF332345 [ ACTGAAGGAAGAGTGACACTGGAATGGAAGCAGTTGCCAGTTAGCTGTTTCCTATAAGCAGTGTGTATAGTGCATAACCTGGACTTCACATCTGTAACACTCCCAAGTCCCAAGTAGCAGCTTTTCCTCCCATGCGGTTTGATCTAAATCGCCTGACTGTTTTAGAAGGTTTTTACTGTGTATCTACATCCTGACCCATGCTAAGGGAGTAAGGGTGACTGCCCTGTCGCAAAATGAGAAGAGCTATGTAAAATTTGATAAATAATGATGCTAAGGATCATGCGCAATACTTTGCTCAATGTAAAAAAAAAAAAAAAAACACTATCATGCCGTTACGTAGCGTATCGTTGACAG] consensusID : consensus_13051#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 185 fasta sequence [GGGGCGATTTAGATCCAACCACCACTGGGAGAAAAAGCCTGACTGTTTTAGAAGNTTTTTACTGTGTATCTACACTCCTGACCCACTGCTAAGGGAGTAAGGGTGACTGCCCCTGTCCCCAAATGAGAAGAGCTATGTAAAATTTGATAAATAATGATGCTAAGGATCATGCCCCAAAAAAAAAA] [+] EMBL BI806651 [GGGGCGATTTAGATCCAACCACCACTGGGAGAAAAAGCCTGACTGTTTTAGAAGNTTTTTACTGTGTATCTACACTCCTGACCCACTGCTAAGGGAGTAAGGGTGACTGCCCCTGTCCCCAAATGAGAAGAGCTATGTAAAATTTGATAAATAATGATGCTAAGGATCATGCCCCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13051#0 CCACCGCCGCCCGCCACCTCGCCGCCGACCAGACGAGCCGCCGTTTGACCCAACACCGAG 60 consensus_13051#1 ------------------------------------------------------------ consensus_13051#2 ------------------------------------------------------------ consensus_13051#3 ------------------------------------------------------------ consensus_13051#0 CTCCCGCGCGGAGTTGATGTCCATCTCCCCTTCCGAATCCACCAGAGGATCCCAGCCGCT 120 consensus_13051#1 ------------------------------------------------------------ consensus_13051#2 ------------------------------------------------------------ consensus_13051#3 ------------------------------------------------------------ consensus_13051#0 CGCGCCGCGCCATTCCAACCCTAGCCCCGGACCCCGCCATGGCAACAGCTCCGCCCCACC 180 consensus_13051#1 ------------------------------------------------------------ consensus_13051#2 ------------------------------------------------------------ consensus_13051#3 ------------------------------------------------------------ consensus_13051#0 GCGCCGCCGCGGCCGACGCTCCCCTACGGCTCCCGTCTCACCGCCCTCAGCCGCCGGCGG 240 consensus_13051#1 ------------------------------------------------------------ consensus_13051#2 ------------------------------------------------------------ consensus_13051#3 ------------------------------------------------------------ consensus_13051#0 GAGCGGCGGCCCGAGCTCCGTCTCGGTGGTTCCAGCTATCAGAGAATATGTTGATACTTC 300 consensus_13051#1 ------------------------------------------------------------ consensus_13051#2 ------------------------------------------------------------ consensus_13051#3 ------------------------------------------------------------ consensus_13051#0 CCAAAAGGTAGTTGGATTCAGAATCTCTAGAGAAGAGAATGATGATTCATATACCCAAGA 360 consensus_13051#1 ------------------------------------------------------------ consensus_13051#2 ------------------------------------------------------------ consensus_13051#3 ------------------------------------------------------------ consensus_13051#0 AGTTGGCAATTTTTCTGAATGCCACTCTTCTGAACATGGGAATTCAGGTTTTTCAGCCAA 420 consensus_13051#1 ------------------------------------------------------------ consensus_13051#2 ------------------------------------------------------------ consensus_13051#3 ------------------------------------------------------------ consensus_13051#0 TAATGGCACCTCAGGCCAGGCAACTCCTCAGAGACCTGAATTGATGGAATCCCTGAAGAT 480 consensus_13051#1 ------------------------------------------------------------ consensus_13051#2 ------------------------------------------------------------ consensus_13051#3 ------------------------------------------------------------ consensus_13051#0 TGATCTATCCACTACAAATTCTAGTGGGAATGGTACTCAGGTGACTGCTAGAAAGAATCA 540 consensus_13051#1 ------------------------------------------------------------ consensus_13051#2 ------------------------------------------------------------ consensus_13051#3 ------------------------------------------------------------ consensus_13051#0 GTCTGTAAATGCCAATTATCTGCTGAATTTCCACTATGATCCAATTTCTCGGCCACAGCC 600 consensus_13051#1 ------------------------------------------------------------ consensus_13051#2 ------------------------------------------------------------ consensus_13051#3 ------------------------------------------------------------ consensus_13051#0 TAGAGGCCCCAGAACATATCCTACAAGAAGACAGAGGAAGATCAGACCATACAACAAAGA 660 consensus_13051#1 ------------------------------------------------------------ consensus_13051#2 ------------------------------------------------------------ consensus_13051#3 ------------------------------------------------------------ consensus_13051#0 TTTGTTCCTACAAGCAAATTTTAAGTTTGTTGTGTTGGATACTGGAAGCTATGAAATAGA 720 consensus_13051#1 ------------------------------------------------------------ consensus_13051#2 ------------------------------------------------------------ consensus_13051#3 ------------------------------------------------------------ consensus_13051#0 ATTAATGGATCCAGATAAGATGCTCCAGTGGGAAGATATTGTATGTGTAAGATATTATAG 780 consensus_13051#1 ------------------------------------------------------------ consensus_13051#2 ------------------------------------------------------------ consensus_13051#3 ------------------------------------------------------------ consensus_13051#0 CCCTTGTGAGGTGCAATGCCCTATTTGCTTGGAGAGCCCATTGTGCCCACAGATTACATC 840 consensus_13051#1 ------------------------------------------------------------ consensus_13051#2 ------------------------------------------------------------ consensus_13051#3 ------------------------------------------------------------ consensus_13051#0 ATGTGGTCATATATATTGCTTTCCATGCATTTTACGTTATTTACTTATGGGAAAAGAAGA 900 consensus_13051#1 ------------------------------------------------------------ consensus_13051#2 ------------------------------------------------------------ consensus_13051#3 ------------------------------------------------------------ consensus_13051#0 TTACAAAGGTGAAAGCTGGAAGAAGTGCCCACTGTGTTTCATGATGATCTCAACAAAGGA 960 consensus_13051#1 ------------------------------------------------------------ consensus_13051#2 ------------------------------------------------------------ consensus_13051#3 ------------------------------------------------------------ consensus_13051#0 GTTGTATACAATCTATATTACTCAAGTCCAGCATTTTCATGTTGGTGACAATGTGACATT 1020 consensus_13051#1 ------------------------------------------------------------ consensus_13051#2 ------------------------------------------------------------ consensus_13051#3 ------------------------------------------------------------ consensus_13051#0 TACACTTTTGAGCCGCTCAAAAAATTCACTCACTCCTTCTATTAAGAACCTCACTGATGA 1080 consensus_13051#1 ------------------------------------------------------------ consensus_13051#2 ------------------------------------------------------------ consensus_13051#3 ------------------------------------------------------------ consensus_13051#0 ATCTACTATAGACGAAGATCCTTGCAGTGCATTCTCCAAGTTCATTTTGACGTCTGATGT 1140 consensus_13051#1 ------------------------------------------------------------ consensus_13051#2 ------------------------------------------------------------ consensus_13051#3 ------------------------------------------------------------ consensus_13051#0 GGAACTTTCTGTTAGAGAGGCAAAAACAGATCTTGTTAATTGGTTGCATATGGCAGATTT 1200 consensus_13051#1 ------------------------------------------------------------ consensus_13051#2 ------------------------------------------------------------ consensus_13051#3 ------------------------------------------------------------ consensus_13051#0 AGGCCTTGTGGGTGACTTGGAGAAACTTCCATACGTTTCTACCGCTTTGGAGCAGCTAGA 1260 consensus_13051#1 ------------------------------------------------------------ consensus_13051#2 ------------------------------------------------------------ consensus_13051#3 ------------------------------------------------------------ consensus_13051#0 AGAACGGATGAAATATTGGAGTGAGTACAGAAATTTTAGTGTCAGCCCTCCCCTAAAAGA 1320 consensus_13051#1 ------------------------------------------------------------ consensus_13051#2 ------------------------------------------------------------ consensus_13051#3 ------------------------------------------------------------ consensus_13051#0 CAGCTTCTCACCTGTAACTAGTTCCAAATCAAGGAACCCTAATAATGCACAATCTTCACG 1380 consensus_13051#1 ------------------------------------------------------------ consensus_13051#2 ------------------------------------------------------------ consensus_13051#3 ------------------------------------------------------------ consensus_13051#0 CCAGAACAGTGAACACAAGCTATCTCCTCTATCAGATGAAGATATGATTGCTGGTGTTTC 1440 consensus_13051#1 ------------------------------------------------------------ consensus_13051#2 ------------------------------------------------------------ consensus_13051#3 ------------------------------------------------------------ consensus_13051#0 GGAGCTCTGTATTTCACCTGAATCAAATAAAATCTTTAATAAAGGAATGCCATCGAAAAC 1500 consensus_13051#1 ------------------------------------------------------------ consensus_13051#2 ------------------------------------------------------------ consensus_13051#3 ------------------------------------------------------------ consensus_13051#0 AGAAGAGAGATGTATGGCTCCCATAGATTCAAATGAGAATGATACTTATAATTTTTACCA 1560 consensus_13051#1 ------------------------------------------------------------ consensus_13051#2 ------------------------------------------------------------ consensus_13051#3 ------------------------------------------------------------ consensus_13051#0 GGTATCTGATGGCCAACACCTAATTCTTCATCCGCTAAACATGAAATGCCTTATAAACCA 1620 consensus_13051#1 ------------------------------------------------------------ consensus_13051#2 ------------------------------------------------------------ consensus_13051#3 ------------------------------------------------------------ consensus_13051#0 TTATGGAAGTTCTGATATGCTCCCACCAAGAATACATGGAAAAATCTTGGAGCTAGAAAC 1680 consensus_13051#1 ------------------------------------------------------------ consensus_13051#2 ------------------------------------------------------------ consensus_13051#3 ------------------------------------------------------------ consensus_13051#0 TGTAACACAATCCGAAGCTACAAGAAAGCGCTATCGTTATCTAAGTCACTTCTCATTGAC 1740 consensus_13051#1 ------------------------------------------------------------ consensus_13051#2 ------------------------------------------------------------ consensus_13051#3 ------------------------------------------------------------ consensus_13051#0 AACAACGTTCCAGTTCTGTGAAATTGACCTGGGTGATATGCTGCCTCCTAGCTCATTAGC 1800 consensus_13051#1 ------------------------------------------------------------ consensus_13051#2 ------------------------------------------------------------ consensus_13051#3 ------------------------------------------------------------ consensus_13051#0 TCCATTCATGGATGAAATCAAGAAGCGAGAGAAACAGAGGAAACGAACTGCCAAGAAGGA 1860 consensus_13051#1 ------------------------------------------------------------ consensus_13051#2 ------------------------------------------------------------ consensus_13051#3 ------------------------------------------------------------ consensus_13051#0 AGAAAGCGATAGAGTGAAAGCCGAAGTTGCTGCTGCTGCACAGGCATCTGCAATGCTGTT 1920 consensus_13051#1 ------------------------------------------------------------ consensus_13051#2 ------------------------------------------------------------ consensus_13051#3 ------------------------------------------------------------ consensus_13051#0 TGAACATACAAGCTTCTCTCCCAGTAGTGGGCCACATGGCGATTTTATGTTCTCTCTGGA 1980 consensus_13051#1 ------------------------------------------------------------ consensus_13051#2 ------------------------------------------------------------ consensus_13051#3 ------------------------------------------------------------ consensus_13051#0 TGACTTTGAAGCTCTTGGAAACAATGCTGGACCCTCCACGAGTCCACCAGCCAGCGAAAG 2040 consensus_13051#1 ------------------------------------------------------------ consensus_13051#2 ------------------------------------------------------------ consensus_13051#3 ------------------------------------------------------------ consensus_13051#0 AAAGCTTTTCTCCGATGTTGCACGGCTTGGCTTTGCGTCTGCCCAAGACTCGCCTCCTCT 2100 consensus_13051#1 ------------------------------------------------------------ consensus_13051#2 ------------------------------------------------------------ consensus_13051#3 ------------------------------------------------------------ consensus_13051#0 AAGAGTTGAATCTGGGGATTTGACTGGCAAAAGTGAAAGCACGGGGGAACAAGGGCCAGC 2160 consensus_13051#1 ------------------------------------------------------------ consensus_13051#2 ------------------------------------------------------------ consensus_13051#3 ------------------------------------------------------------ consensus_13051#0 CGCAACACCCGCATTATCCTTTGCCAGCATCATTTCCTCCACTAGAGCGTCAGACAATAG 2220 consensus_13051#1 ------------------------------------------------------------ consensus_13051#2 ------------------------------------------------------------ consensus_13051#3 ------------------------------------------------------------ consensus_13051#0 CCTGGACACGCACAAACCAAATGTAGTCGGGAAGAAAGGCAAGAAACCCACCAAAGTGCT 2280 consensus_13051#1 ---------------------------------------------------CAAAGTGCT 9 consensus_13051#2 ------------------------------------------------------------ consensus_13051#3 ------------------------------------------------------------ consensus_13051#0 CTTGTCCACTGGCGGTGGCCGCCGATACTGAAGGAAGAGTGACACTGGAATGGAAGCAGT 2340 consensus_13051#1 CTTGTCCACTGGCGGTGGCCGCCGATACTGAAGGAAGAGTGACACTGGAATGGAAGCAGT 69 consensus_13051#2 -------------------------TACTGAAGGAAGAGTGACACTGGAATGGAAGCAGT 35 consensus_13051#3 ------------------------------------------------------------ consensus_13051#0 TGCCAGTTGGCTGTTTCCTATAAGCAGTGTGTATAGTGCATAACCTGGACTTCACATCTG 2400 consensus_13051#1 TGCCAGTTGGCTGTTTCCTATAAGCAGTGTGTATAGTGCATAACCTGGACTTCACATCTG 129 consensus_13051#2 TGCCAGTTAGCTGTTTCCTATAAGCAGTGTGTATAGTGCATAACCTGGACTTCACATCTG 95 consensus_13051#3 ------------------------------------------------------------ consensus_13051#0 TAACACTCCCAAGTCCCAAGTAGCAGCTTTTTCTCCCATGTGGTTTGATCTAAATCGCCT 2460 consensus_13051#1 TAACACTCCCAAGTCCCAAGTAGCAGCTTTTTCTCCCATTTGGTTTGATCTAAATCGCCT 189 consensus_13051#2 TAACACTCCCAAGTCCCAAGTAGCAGCTTTTCCTCCCATGCGGTTTGATCTAAATCGCCT 155 consensus_13051#3 -------------------GGGGC-GATTTAGATCCAACCACCACTGGGAGAAAAAGCCT 40 * ** * *** *** * ** *** **** consensus_13051#0 GACTGTTTTAGAAGGTTTTTACTGTGTATCTACA-TCCTGACCCA-TGCTAAGGGAGTAA 2518 consensus_13051#1 GACTGTTTTAGAAGGTTTTTACTGTGTATCTACA-TCCTGACCCA-TGCTAAGGGAGTAA 247 consensus_13051#2 GACTGTTTTAGAAGGTTTTTACTGTGTATCTACA-TCCTGACCCA-TGCTAAGGGAGTAA 213 consensus_13051#3 GACTGTTTTAGAAGNTTTTTACTGTGTATCTACACTCCTGACCCACTGCTAAGGGAGTAA 100 ************** ******************* ********** ************** consensus_13051#0 GGGTGACTGCCC-TGTCGCAAAATGAGAAGAGCTATGTAAAATTTGATAAATAATGATGC 2577 consensus_13051#1 GGGTGACTGCCC-TGTCGCAAAATGAGAAGAGCTATGTAAAATTTGATAAATAAT----- 301 consensus_13051#2 GGGTGACTGCCC-TGTCGCAAAATGAGAAGAGCTATGTAAAATTTGATAAATAATGATGC 272 consensus_13051#3 GGGTGACTGCCCCTGTCCCCAAATGAGAAGAGCTATGTAAAATTTGATAAATAATGATGC 160 ************ **** * *********************************** consensus_13051#0 TAAGGATCATGCGCAATACTTTGCTCAATGTACGTCGACGAGTTGAT---CCGTCATAGG 2634 consensus_13051#1 ------------------CTTTGCTCAATGTACGTCGACGAGTTGAT---CCGTCATGGG 340 consensus_13051#2 TAAGGATCATGCGCAATACTTTGCTCAATGTAAAAAAAAAAAAAAAAACACTATCATGCC 332 consensus_13051#3 TAAGGA------------TCATGCCCCAAAAAAAAAA----------------------- 185 *** * * * consensus_13051#0 CTGATACAGCCTGCTGT------------------------------------------- 2651 consensus_13051#1 CTGATACAGCCTGCTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 400 consensus_13051#2 GTTACGTAGCGTATCGTTGACAG------------------------------------- 355 consensus_13051#3 ------------------------------------------------------------ consensus_13051#0 ------------------------------------------ consensus_13051#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 442 consensus_13051#2 ------------------------------------------ consensus_13051#3 ------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||