These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13071#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1308 fasta sequence [TCGGTCTTCCTTCCTTCCGTCCGTCCGCGGGGCACAAACGCACCCACCACCCCCCCATAACGCGCGAGATCCCCTCTCCGCCCCCCCTCTCCCGATCCGCCCCGCCGGATCCCGCCCCGCCCCGATCCGATCCGACCTAGCCCGCCTCGCCGCCGCCGCCGTCGCCGGCCGGAGAAGGGAGGAAGGAGAAGGAGAAGGAGAAGAAGAGGAGGCACGAGATGGCCCCCGTGTCGGCGCTCGCCAAGTACAAGCTGGTGTTCCTCGGCGACCAGTCCGTCGGCAAGACCAGCATCATCACCCGCTTCATGTACGACAAGTTCGACAACACCTACCAGGCTACAATCGGTATTGACTTCCTGTCAAAGACAATGTACCTTGAAGATAGGACTGTCAGACTGCAACTTTGGGATACAGCTGGTCAGGAACGATTCAGGAGTTTGATTCCAAGCTATATCAGAGACTCTTCCGTTGCTGTCATCGTATTTGATGTTGCAAGCAGACAGTCTTCCTAAACACTTCAAAATGGATAGAGGAAGTTAGAACTGAGAGGGGCAGTGATGTTATCATTGTGCTGGTTGGGAACAAAACTGATCTTGTTGACAAGAGGCAAGTCTCCATAGAGGAAGGAGAGGGCAAAGCGAAAGATCTCGGTGTGATGTTCATTGAAACCAGTGCTAAAGCTGGTTTTAACATTAAGGCGTTGTTCCGTAAGATTGCGGCTGCACTTCCTGGAATGGAGACCCTCTCATCAGCAAAGCAGGAAGACATGGTTGATGTGAACTTGAAGTCAAGCAACGCCAACTCATCCCAGTCTCAGGCACAGGCTGGGGGATGCAGTTGTTAGCTTCAGTCCCCTAACACTTACTGCTTCGCGGTCTCAAGGCCCCCCATGCCTCTTTCACCAAAAGCATCAGTACTGCTTGTCTGAGGGGAGGAGAGTTAAATTGTCGTCTCATGCCAGTGAATCCGACCGAGTCTTCGATTCGGTCGAACGAACCA-TTTGCATTGGAAAAAGATAACGTTTTATGAGTTTCTACCATTTTCTCAGTGGCCTAAAGCTAGCAACAGTGTATAGTTGGGTTGGCACTGTGAACTTCTATCTCTTGAGTTGGGTATTTAGAAGTTAGTGATTG-TTTTAAGTTCATCCTCTATATATTTTCATCTCCCATCTTGTCACAGTTAGCCTCAGTAATGTTTTCTATGGTGTACCGA-ACATATATTGGAATTTTTGTAAGCTTACAATAATCTCTACATGGCAGTAGCCATATGTTATCCCGGTTGTTTTGACCATTCAAAAAAAAAAAAAAA] [+] EMBL AK111986 [TCGGTCTTCCTTCCTTCCGTCCGTCCGCGGGGCACAAACGCACCCACCACCCCCCCATAACGCGCGAGATCCCCTCTCCGCCCCCCCTCTCCCGATCCGCCCCGCCGGATCCCGCCCCGCCCCGATCCGATCCGACCTAGCCCGCCTCGCCGCCGCCGCCGTCGCCGGCCGGAGAAGGGAGGAAGGAGAAGGAGAAGGAGAAGAAGAGGAGGCACGAGATGGCCCCCGTGTCGGCGCTCGCCAAGTACAAGCTGGTGTTCCTCGGCGACCAGTCCGTCGGCAAGACCAGCATCATCACCCGCTTCATGTACGACAAGTTCGACAACACCTACCAGGCTACAATCGGTATTGACTTCCTGTCAAAGACAATGTACCTTGAAGATAGGACTGTCAGACTGCAACTTTGGGATACAGCTGGTCAGGAACGATTCAGGAGTTTGATTCCAAGCTATATCAGAGACTCTTCCGTTGCTGTCATCGTATTTGATGTTGCAAGCAGACAGTCTTCCTAAACACTTCAAAATGGATAGAGGAAGTTAGAACTGAGAGGGGCAGTGATGTTATCATTGTGCTGGTTGGGAACAAAACTGATCTTGTTGACAAGAGGCAAGTCTCCATAGAGGAAGGAGAGGGCAAAGCGAAAGATCTCGGTGTGATGTTCATTGAAACCAGTGCTAAAGCTGGTTTTAACATTAAGGCGTTGTTCCGTAAGATTGCGGCTGCACTTCCTGGAATGGAGACCCTCTCATCAGCAAAGCAGGAAGACATGGTTGATGTGAACTTGAAGTCAAGCAACGCCAACTCATCCCAGTCTCAGGCACAGGCTGGGGGATGCAGTTGTTAGCTTCAGTCCCCTAACACTTACTGCTTCGCGGTCTCAAGGCCCCCCATGCCTCTTTCACCAAAAGCATCAGTACTGCTTGTCTGAGGGGAGGAGAGTTAAATTGTCGTCTCATGCCAGTGAATCCGACCGAGTCTTCGATTCGGTCGAACGAACCA TTTGCATTGGAAAAAGATAACGTTTTATGAGTTTCTACCATTTTCTCAGTGGCCTAAAGCTAGCAACAGTGTATAGTTGGGTTGGCACTGTGAACTTCTATCTCTTGAGTTGGGTATTTAGAAGTTAGTGATTG TTTTAAGTTCATCCTCTATATATTTTCATCTCCCATCTTGTCACAGTTAGCCTCAGTAATGTTTTCTATGGTGTACCGA ACATATATTGGAATTTTT ] [+] EMBL AU173528 [ ACAAACGCACCCACCACCCCCCCATAACGCGCGAGATCCCCTCTCCGCCCCCCCTCTCCCGATCCGCCCCGCCGGATCCCGCCCCGCCCCGATCCGATCCGACCTAGCCCGCCTCGCCGCCGCCGCCGTCGCCGGCCGGAGAAGGGAGGAAGGAGAAGGAGAAGGAGAAGAAGAGGAGGCACGAGATGGCCCCCGTGTCGGNGCTCGCCAAGTACAAGCTGGTGTTCCTCGGng ] [+] EMBL CA756608 [ ACAAAACTGATCTTGTTGACAAGAGGCAAGTCTCCATAGAGGAAGGAGAGGGCAAAGCGAAAGATCTCGGTGTGATGTTCATTGAAACCAGTGCTAAAGCTGGTTTTAACATTAAGGCGTTGTTCCGTAAGATTGCGGCTGCACTTCCTGGAATGGAAACCCTCTCATCAGCAAAGCAGGAAGACATGGTTGATGTGAACTTGAAGTCAAGCAACGCCAACTCATCCCAGTCTCAGGCACAGGCTGGGGGATGCAGTTGTTAGCTTCAGTCCCCTAACACTTACTGCTTCGCGGTCTCAAGGCCCCCCATGCCTCTTTCACCAAAAGCATCAGTACTGCTTGTCTGAGGGGAGGAGAGTTAAATTGTCGTCTCATGCCAGTGAATCCGACCGAGTGTTCGATTCGGTCGAACGAACCA TTTGCATTGGAAAAAGATAACGTTTTATGAGTTTCTACCATTTTCTCAGTGGCCTAAAGCTAGCAACAGTGTATAGTTGGGTTGGCACTGTGAACTTCTATCTCTTGAGTTGGGTATTTAGAAGTTAGTGATTGNTTTTAAGTTCATNCTCTATATATTTTCATCTCCCATCTTGTCACAGTTAGCCTCAGTANTGTTTTCTATGGTGTACC ] [+] EMBL BM419914 [ GAAGACAT GTTGATGTGAACTTGAAGTCAAGCAAC CC ACTCATCCCAGTCTCAGGCACA GCTGGGGGATGCAGTTGTTAGCTTCAGTCCCCTAACACTTACTGCTTCGCGGTCTCAAGGCCCCCCATGCCTCTTTCACC AAAGCATCAGTACTGCTTGTCTGAGGGGAGGAGAGTTAAATTGTCGTCTCATGCCAGTGAATCCGACCGAGTCTTCGATTCGGTCGAACGAACCACTTTGCATTGGAAAAAGATAACGTTTTATGAGTTTCTACCATTTTCTCAGTGGCCTAAAGCTAGC ACAGTGTATAGTTGGGTTGGCACTGTGAACTTCTATCTCTTGAGTTGGGTATTTAGAAGTTAGTGATTG TTTTAAGTTCATCCTCTATATATTNTCATCTCCCATCTTGTCACAGTTAGCCTCAGTAATGTTTTCTATGGTGTACCGA ACATATATTGGAATTTTTGTAAGCTTAC ATAATCTCTACATGGC GTAGCCATATGTTATCCCGGTTGTTTTGACCATTCAAAA ] [+] EMBL AA751658 [ CTCAGGCNCAGGCTGGGGGATGCAGTTGTTAGCTTCAGTCCCCTAACACTTACTGCTTCGCGGTCTCAAGGCCCCCCATGCCTCTTTCACCAAAAGCATCAGTACTGCTTGTCTGAGGGGAGGAGAGTTAAATTGTCGTCTCATGCCAGTGAATCCGACCGAGTCTTCGATTCGGTCGAACGAACCA TTTGCATTGGAAAAAGATAACGTTTTATGAGTTTCTACCATTTTCTCAGTGGCCTAAAGCTAGCAACAGTGTATAGTTGGGTTGGCACTGTNAACTTCTATCTCTTGAGTTGGGTATTTANAANTTAGTGATTG TTTTAAGTTCATCCTCTATATATTTTCATCTCCCATCTTGTCACAGTTAGCC ] [-] EMBL CB966444 [ CTTCAGTCCCCTAACACTTACTGCTTCGCGGTCTCAAGGCCCCCCATGCCTCTTTCACCAAAAGCATCAGTACTGCTTGTCTGAGGGGAGGAGAGTTAAATTGTCGTCTCATGCCAGTGAATCCGACCGAGTCTTCGATTCGGTCGAACGAACCA TTTGCATTGGAAAAAGATAACGTTTTATGAGTTTCTACCATTTTCTCAGTGGCCTAAAGCTAGCAACAGTGTATAGTTGGGTTGGCACTGTGAACTTCTATCTCTTGAGTTGGGTATTTAGAAGTTAGTGATTG TTTTAAGTTCATCCTCTATATATTTTCATCTCCCATCTTGTCACAGTTAGCCTCAGTAATGTTTTCTATGGTGTACCGA ACATATATTGGAATTTTTGTAAGCTTAC ATAATCTCTACATGGCAGTAGCCATATGTTATCCCGGTT ] [-] EMBL BU673631 [ CTTCAGTCCCCTTACACTGACTGCTTCGCGGTCTCAAGGCCCCCCATGCCTCTTTCACCAAAAGCATCAGTACTGCTTGTCTGAGGGGAGGAGAGTTAAATTGTCGTCTCATGCCAGTGAATCCGACCGAGTCTTCGATTCGGTCGAACGAACCA TTTGCATTGGAAAAAGATAACGTTTTATGAGTTTCTACCATTTTCTCAGTGGCCTAAAGCTAGCAACAGTGTATAGTTGGGTTGGCACTGTGAACTTCTATCTCTTGAGTTGGGTATTTAGAAGTTAGTGATTG TTTTAAGTTCATCCTCTATATATTTTCATCTCCCATCTTGTCACAGTTAGCCTCAGTAATGTTTTCTATGGTGTACCGA ACATATATTGG ATTTTTGTAAGCTTACAATAATCTCTACATGGCAGTAGCCATATGTTATCCCGGTT ] [+] EMBL AU173529 [ CCCCCCATGCCTCTTTCACCAAAAGCATCAGTACTGCTTGTNTGAGGGGAGGAGAGTTAAATTGTCGTCTCATGCCAGTGAATCCGACCGAGTTTTCGATTCGGTCGAACGAACCA TTTGCATTGGAAAAANATAACGTTTTATGAGTTTNTACCATTTTNTCAGTGGCCTAAAGCTAGCAACAGTGTATAGTTGGGTTGGCNCTGTGAACTTNTATNTCTTGAGTTGGGTATTTANAAGTTAGTGATTG TTTTAAGTTCATCCTCTATATATTTTCATCTCCCATCTTGTCNCAGTTAGCCTCAGTAATGTTTTNTATGGTGTACCGA ACATATATTGGAATTTTTGTAAGCTTACAATAATCTNTACATGGCAGTAGCCATATGTTATCCCGGTTGTTTTGNCCNAAAAAAAAAAAAAAAAAA] [+] EMBL CF328001 [ AGAAGTTAGTGATTG TTTTAAGTTCATCCTCTATATATTTTCATCTCCCATCTTGTCACAGTTAGCCTCAGTAATGTTTTCTATGGTGTACCGA ACATATATTGGAATTTTTGTAAGCTTACAATAATCTCTACATGGCAGTAGCCATATGTTATCCCGGTTGTTTTGACCATTCAAAAA ] [-] EMBL CF328000 [ GAAGTTAGTGATTG TTTTAAGTTCATCCTCTATATATTTTCATCTCCCATCTTGTCACAGTTAGCCTCAGTAATGTTTTCTATGGTGTACCGACACATATATTGGAATTTTTGTAAGCTTACAATAATCTCTACATGGCAGTAGCCATATGTTATCCCGGTTGTTTTGACCATTCAAAAAA ] [+] EMBL CF330815 [ TTTAAGTTCATCCTCTATATATTTTCATCTCCCATCTTGTCACAGTTAGCCTCAGTAATGTTTTCTATGGTGTACCGA ACATATATTGGAATTTTTGTAAGCTTACAATAATCTCTACATGGCAGTAGCCATATGTTATCCCGGTTGTTTTGACCAaaaa ] [-] EMBL CF330814 [ TTAAGTTCATCCTCTATATATTTTCATCTCCCATCTTGTCACAGTTAGCCTCAGTAATGTTTTCTATGGTGTACCGACACATATATTGGAATTTTTGTAAGCTTACAATAATCTCTACATGGCAGTAGCCATATGTTATCCCGGTTGTTTTGACCA AAAAA ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||