These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13076#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 997 fasta sequence [GTCCGCATCCGGGTCAAATCAAATCGAGAGAGAGCCCCATCTCGCCTCGCCTCCTCCTCCCTCCTCCCCATTCCCCCGCCGCCGCCGCCGAGGGCGCCGCGACCTGAGAGCACACGCACGCCCGCCATGTGGCGCCGCCTCCAAACCCTGGCCCCGGCCCTGCGCCGCGCCGCCTCCGCCTCCGCCTCCGCGGCGGCATCGGGCGCCGCGGGCCCCGCCTCCCTCGCCCGCGCCGCGCCGCTCTCCACGGCGGCCGCCGCCGCCTTCCGCCGCACCAGCCCTCTCCTGTCCGGGGACAAGCCGGCGACGGTGGAGGACGTCATGCCCATCGCCACGGGGCTGGAGCGCGAGGAGCTCGCGGCGGAGCTCAAGGGGGAGAAGCGGTTCGACATGGATCCTCCCGTAGGCCCATTTGGTACCAAGGAGGCCCCAGCTGTCATTGAATCCTACTATAACAAGAGGATAGTTGGTTGTCCTGGTGGTGAAGGAGAGGATGAGCATGATGTTGTATGGTTCTGGTTGAAAAAAGATGAA-CCGCATGAGTGCCCAGTCTGTTCACAATATTTTGTGCTTAAGGTCATTGGTGATGGTGGTGATCCAGATGGACATGATGATGACGACGAGCATCACCACTAAGGACGCCCATGCCTCGTGGTTCTGATAATAAGAATTTGATGAGGCAGATGATTTCATTTAAACCTTTTTAGCACCAGACTGCTCTACGGCGTCCTTGTTTATGAATGCACACATTTGGCCATCAAGCAGGTGGTAGTTTTTT-CCTTAGGGATTTTGTCCAAACAAAAAACTCAT-CGAGGCTTGACCTGTGCATTTCCTTCGGAGCATCATCGAATAAAAGATGACTGCATCAGCTGCGTTTTTCTTGTGTATCCTAATGGCCATCTGGTGTGATGGACCTGTTCTATTCAGATCATGCAACAGTTTATTTTCAGTGCTCAGTGAGTCCCTGTTTGCAAGCAGCCACTAAATCTTTAAAAAA] [+] EMBL CA758754 [GTCCGCATCCGGGTCAAATCAAATCGAGAGAGAGCCCCATCTCGCCTCGCCTCCTCCTCCCTCCTCCCCATTCCCCCGCCGCCGCCGCCGAGGGCGCCGCGACCTGAGAGCACACGCACGCCCGCCATGTGGCGCCGCCTCCAAACCCTGGCCCCGGCCCTGCGCCGCGCCGCCTCCGCCTCCGCCTCCGCGGCGGCATCGGGCGCCGCGGGCCCCGCCACCCTCGCCCGCGCCGCGCCGCTCTCCACGGCGGGCGCCGCCGCCTTCCGCCGCACCAGACCTCTCCTGTCCGGGGACAAGCCGGCGACGGTGGAGGACGTCATGTCCATCGCCACGGGGCTGGAGCGCGAGGAGCTCGCGGCGGAGCTCAAGGGGGAGAAGCGGTTCGACATGGATCCTCCCGTAGGCCCATTTGGTACCAAGGAGGCCCCAGCTGTCATTGAATCCTACTATAACAAGAGGATAGTTGGTTGTCCTGGTGGTGAAGGAGAGGATGAGCATGATGTTGTATGGTTCTGGTTGAAAAAAGATGAA CCGCATGAGTGCCCAGTCTGTTCACAATATTTTGTGCTTAAGGTCATTGGTGATGGTGGTGATCCAGATGGACATGATGATGACGACGAGCATCACCACTAAGGACGCCCATGCCTCGTGGTTCTGATAATAAGAATTTGATGAGGCAGATGATTTCATTTAAACCTTTTTAGCACCAGACTGCCCTACGGCGTCCTTGGTTATGAATACACACATTTGGCCATCAAGCAGGTGGTAGTTTTTTCCCCTAGGGATTTTGTCCAAACAAAAAACTTATGCGATGCTTGACCTGTGCATTT ] [+] EMBL CB651183 [ AGAGAGAGCCCCTTCTCGCCTCGCCTCCTCCTCCCTCCTCCCCATTCCCCCGCCGCCGCCGCCGAGGGCGCCGCGACCTGAGAGCACACGCACGCCCGCCATGTGGCGCCGCCTCCAAAGCCTGGCCCCGGCCCTGCGCCGCGCCGCCTCCGCCTCCGCCTCCGCGGCGGCATCGGGCGCCGCGGGCCCCGCCTCCCTCGCCCGCGCCGCGCCGCTCTCCACGGCGGCCGCCGCCGCCTTCCGCCGCACCAGCCCTCTCCTGTCCGGGGACAAGCCGGCGACGGTGGAGGACGTCATGCCCATCGCCACGGGGCTGGAGCGCGAGGAGCTCGCGGCGGAGCTCAAGGGGGAGAAGCGGCTCGACATGGATCCTCCCGTAGGCCCATTTGGTACCAAGGAGGCCCCAGCTGTCATTGAATCCTACTATAACAAGAGGATAGTTGGTTGTCCTGGTGGTGAAGGAGAGGATGAGCATGATGTTGTATGGTTCCGGTTGAAAAAAGATGAA CCGCATGAGTGCCCAGTCTGTTCACAATATTTTGTGCTTAAGGTCATTGGTGATGGTGGAGATCCAGATGGACATGATGATGACGACGAGCATCACCACTAAGGACCCCCATGCCTCGTGGTTCTGATAATAAGAATTTGATGAGGCAGATGATTTCATTTAAACCTTTTTAGCACCAaa ] [+] EMBL AK071340 [ CTCCCTCCTCCCCATTCCCCCGCCGCCGCCGCCGAGGGCGCCGCGACCTGAGAGCACACGCACGCCCGCCATGTGGCGCCGCCTCCAAACCCTGGCCCCGGCCCTGCGCCGCGCCGCCTCCGCCTCCGCCTCCGCGGCGGCATCGGGCGCCGCGGGCCCCGCCTCCCTCGCCCGCGCCGCGCCGCTCTCCACGGCGGCCGCCGCCGCCTTCCGCCGCACCAGCCCTCTCCTGTCCGGGGACAAGCCGGCGACGGTGGAGGACGTCATGCCCATCGCCACGGGGCTGGAGCGCGAGGAGCTCGCGGCGGAGCTCAAGGGGGAGAAGCGGTTCGACATGGATCCTCCCGTAGGCCCATTTGGTACCAAGGAGGCCCCAGCTGTCATTGAATCCTACTATAACAAGAGGATAGTTGGTTGTCCTGGTGGTGAAGGAGAGGATGAGCATGATGTTGTATGGTTCTGGTTGAAAAAAGATGAA CCGCATGAGTGCCCAGTCTGTTCACAATATTTTGTGCTTAAGGTCATTGGTGATGGTGGTGATCCAGATGGACATGATGATGACGACGAGCATCACCACTAAGGACGCCCATGCCTCGTGGTTCTGATAATAAGAATTTGATGAGGCAGATGATTTCATTTAAACCTTTTTAGCACCAGACTGCTCTACGGCGTCCTTGTTTATGAATGCACACATTTGGCCATCAAGCAGGTGGTAGTTTTTT CCTTAGGGATTTTGTCCAAACAAAAAACTCAT CGAGGCTTGACCTGTGCATTTCCTTCGGAGCATCATCGAATAAAAGATGACTGCATCAGCTGCGTTTTTCTTGTGTATCCTAATGGCCATCTGGTGTGATGGACCTGTTCTATTCAGATCATGCAACAGTTTATTTTCAGTGCTCAGTGAGTCCCTGTTTGCAAGCAGCCA ] [+] EMBL AU069902 [ CCGCCGCACCAGCCCTCTCCTGTCCGGGGACAAGCCGGCGACGGTGGAGGACGTCATGCCCATCGCCACGGGGCTGGAGCGCGAGGAGCTCGCGGCGGAGCTCAAGGGGGAGAAGCGGTTCGACATGGATCCTCCCGTAGGCCCATTTGGTACCAAGGAGGCCCCAGCTGTCATTGAATCCTACTATAACAAGAGGATAGTTGGTTGTCCTGGTGGTGAAGGAGAGGATGAGCATGATGTTGTATGGTTCTGGTTGAAAAAAGATGAA CCGCATGAGTGCCCAGTCTGTTCACAATATTTTGTGCTTAAGGTCATTGGTGATGGTGGTGATCCAGATGGACATGATGATGACGACGAGCATCACCACTAAGGACGCCCATGCCTCGTGGTTCTGATAATAAGAATTTGATGAGGCAGATGATTTCATTTAAACCTTTTTAGCACCAGACTGCTCTACGGCGTCCTTGTTTATGAATGCACACATTTGGCCATCAAGCAGGTGGTAGTTTTTT CCTTAGGGATTTTGTCCAAACAAAAAACTCAT CGAGGCTTGACCTGTGCATTTCCTTCGGAGCATCATCGAATAAAAGATGACTGCATCAGCTGCG TTTTCTTGNGTATCCTAATGGNCATCTGGTGTGATGGACCTGGTCTATTCAGATCATGC ACAG TTATTTTCAGTGCTtca ] [-] EMBL CB651184 [ GCCCTCTCCTGTCCGGGGACAAGCCGGCGACGGTGGAGGACGTCATGCCCATCGCCACGGGGCTGGAGCGCGAGGAGCTCGCGGCGGAGCTCAAGGGGGAGAAGCGGTTCGACATGGATCCTCCCGTAGGCCCATTTGGTACCAAGGAGGCCCCAGCTGTCATTGAATCCTACTATAACAAGAGGATAGTTGGTTGTCCTGGTGGTGAAGGAGAGGATGAGCATGATGTTGTATGGTTCTGGTTGAAAAAAGATGAA CCGCATGAGTGCCCAGTCTGTTCACAATATTTTGTGCTTAAGGTCATTGGTGATGGTGGTGATCCAGATGGACATGATGATGACGACGAGCATCACCACTAAGGACGCCCATGCCTCGTGGTTCTGATAATAAGAATTTGATGAGGCAGATGATTTCATTTAAACCTTTTTAGCACCAGACTGCTCTACGGCGTCCTTGTTTATGAATGCACACATTTGGCCATCAAGCAGGTGGTAGTTTTTT CCTTAGGGATTTTGTCCAAACAAAAAACTCAT CGAGGCTTGACCTGTGCATTTCCTTCGGAGCATCATCGAATAAAAGATGACTGCATCAGCTGCGTTTTTCTTGTGTATCCTAATGGCCATCTGGTGTGATGGACCTGTTCTATTCAGATCATGCAACAGTTTATTTTCAGTGCTCAGTGAGTCCCTGTTTGCAAGC ] [+] EMBL CF324816 [ TGGAGCGCGAGGAGCTCGCGGCGGAGCTCAAGGGGGAGAAGCGGTTCGACATGGATCCTCCCGTAGGCCCATTTGGTACCAAGGAGGCCCCAGCTGTCATTGAATCCTACTATAACAAGAGGATAGTTGGTTGTCCTGGTGGTGAAGGAGAGGATGAGCATGATGTTGTATGGTTCTGGTTGAAAAAAGATGAA CCGCATGAGTGCCCAGTCTGTTCACAATATTTTGTGCTTAAGGTCATTGGTGATGGTGGTGATCCAGATGGACATGATGATGACGACGAGCATCACCACTAAGGACGCCCATGCCTCGTGGTTCTGATAATAAGAATTTGATGAGGCAGATGATTTCATTTAAACCTTTTTAGCACCAGACTGCTCTACGGCGTCCTTGTTTATGAATGCACACATTTGGCCATCAAGCAGGTGGTAGTTTTTT CCTTAGGGATTTTGTCCAAACAAAAAACTCAT CGAGGCTTGACCTGTGCATTTCCTTCGGAGCATCATCGAATAAAAGATGACTGCATCAGCTGCGTTTTTCTTGTGTATCCTAATGGCCATCTGGTGT ] [+] EMBL BE040401 [ CCTACTATAACAAGAGGATAGTTGGTTGTCCTGGTGGTGAAGGAGAGGATGAGCATGATGTTGTATGGTTCTGGTTGAAAAAAGATGAA CCGCATGAGTGCCCAGTCTGTTCACAATATTTTGTGCTTAAGGTCATTGGTGATGGTGGTGATCCAGATGGACATGATGATGACGACGAGCATCACCACTAAGGACGCCCATGCCTCGTGGTTCTGATAATAAGAATTTGATGAGGCAGATGATTTCATTTAAACCTTTTTAGCACCAGACTGCCCTACGGCGTCCTTGGTTATGAATACACACATTTGGCCATCAAGCAGGTGGTAGTTTTTT CCTTAGGGATTTTGTCCAAACAAAAAACTTATGCGATGCTTGACCTGTGCATTT ] [+] EMBL BE228939 [ GTGGTGAAGGAGANGATGAGCATGATGTTGTATGGTTCTGGTTGAAAAAAGATGAA CCGCATGAGTGCCCAGTCTGTTCACAATATTTTGTGCTTAAGGTCNTTGGTGATGGTGGTGATCCACATGGACATGATGATGACGACNAGCATCNCCACTAAGGACGCCCATGCCTCGTGGTTCTGATAATAANAATTTGATGAGGCAGATGATTTCNTTTAAACCTTTTTAGCACCACACTGCTCTACNGCGTCCTTNTTTTTGAATGCACACATTTGGCCATCAACCNNGTGGTANTTTTTT CCTTA GGATTTTGTCCAAACAAAAAACTCAT CCANGCTTGACCTGTGCATTTCCTTCNGAGCNTCNNCNAATAAAANATG ] [-] EMBL C26927 [ ggTCTGGTTGAAAAAAGATGAACCCGCATGAGTGCCCAGNCTGGTCACAATATTTTGTGCTTAAGGTCATTGGTNATGGTGGTGATCCAGATGGACATGATGATGACNACGAGCATCACCACTAAGGACGCCCATGCCTCGTGGTTCTGATAATAAGAATTTGATGAGGCAGATGATTTCATTTAAACCTTTTTAGCACCAGACTGCTCTACGGCGTCCTTGTTTATGAATGCACACATTTGGCCATCAAGCAGGTGGTAGTTTTTT CCTTAGGGATTTTGTCCAAACAAAAAACTCAT CGAGGCTTGACCTGTGCATGTTCTTCGGAGCATCATCGAATAAAAGATGACTGCATCAGCTGC ] [+] EMBL AU078014 [ ATGAGTGCCCAGTCTGTTCACAATATTTTGTGCTTAAGGTCATTGGTGATGGTGGTGATCCAGATGGACATGATGATGACGACGAGCATCACCACTAAGGACGCCCATGCCTCGTGGTTCTGATAATAAGAATTTGATGAGGCAGATGATTTCATTTAAACCTTTTTAGCACCAGACTGCTCTACGGCGTCCTTGTTTATGAATGCACACATTTGGCCATCAAGCAGGTGGTAGTTTTTT CCTTAGGGATTTTGTCCAAACAAAAAACTCAT CGAGGCTTGACCTGTGCATTTCCTTCGGAGCATCATCGAATAAAAGATGACTGCATCAGCTGCGTTTTTCTTGTGTATCCTAATGGCCATCTGGTGTGATGGACCTGTTCTATTCAGATCATGCAACAGTTTATTTTCAGTGCTCAGTGAGTCCCTGTTTGCAAGCAGCCACTAAATCTTTAAAAA ] [+] EMBL CA765101 [ AAAAAACTCAT CGAGGCTTGACCTGTGCATTTCCTTCGGAGCATCATCGAATAAAAGATGACTGCATCAGCTGCGTTTTTCTTGTGTATCCTAATGGCCNTCTGGTGTGACGGACCTGTTCTATTCAGATCATGCAACAGTTTATTTTCAGTGCTCAGTGAGTCCCTGTTTGCAAGCAGCCACTAAATCTTTAAAAAA] consensusID : consensus_13076#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 211 fasta sequence [TCATCGAATAAAAGATGACTGCATCAGCTGCGTTTTTCTTGTGTATCCTAATGGCCATCTGGTGTGATGGACCTGTTCTATTCAGATCATGCAACAGTTTATTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF317002 [TCATCGAATAAAAGATGACTGCATCAGCTGCGTTTTTCTTGTGTATCCTAATGGCCATCTGGTGTGATGGACCTGTTCTATTCAGATCATGCAACAGTTTATTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13076#0 GTCCGCATCCGGGTCAAATCAAATCGAGAGAGAGCCCCATCTCGCCTCGCCTCCTCCTCC 60 consensus_13076#1 ------------------------------------------------------------ consensus_13076#0 CTCCTCCCCATTCCCCCGCCGCCGCCGCCGAGGGCGCCGCGACCTGAGAGCACACGCACG 120 consensus_13076#1 ------------------------------------------------------------ consensus_13076#0 CCCGCCATGTGGCGCCGCCTCCAAACCCTGGCCCCGGCCCTGCGCCGCGCCGCCTCCGCC 180 consensus_13076#1 ------------------------------------------------------------ consensus_13076#0 TCCGCCTCCGCGGCGGCATCGGGCGCCGCGGGCCCCGCCTCCCTCGCCCGCGCCGCGCCG 240 consensus_13076#1 ------------------------------------------------------------ consensus_13076#0 CTCTCCACGGCGGCCGCCGCCGCCTTCCGCCGCACCAGCCCTCTCCTGTCCGGGGACAAG 300 consensus_13076#1 ------------------------------------------------------------ consensus_13076#0 CCGGCGACGGTGGAGGACGTCATGCCCATCGCCACGGGGCTGGAGCGCGAGGAGCTCGCG 360 consensus_13076#1 ------------------------------------------------------------ consensus_13076#0 GCGGAGCTCAAGGGGGAGAAGCGGTTCGACATGGATCCTCCCGTAGGCCCATTTGGTACC 420 consensus_13076#1 ------------------------------------------------------------ consensus_13076#0 AAGGAGGCCCCAGCTGTCATTGAATCCTACTATAACAAGAGGATAGTTGGTTGTCCTGGT 480 consensus_13076#1 ------------------------------------------------------------ consensus_13076#0 GGTGAAGGAGAGGATGAGCATGATGTTGTATGGTTCTGGTTGAAAAAAGATGAACCGCAT 540 consensus_13076#1 ------------------------------------------------------------ consensus_13076#0 GAGTGCCCAGTCTGTTCACAATATTTTGTGCTTAAGGTCATTGGTGATGGTGGTGATCCA 600 consensus_13076#1 ------------------------------------------------------------ consensus_13076#0 GATGGACATGATGATGACGACGAGCATCACCACTAAGGACGCCCATGCCTCGTGGTTCTG 660 consensus_13076#1 ------------------------------------------------------------ consensus_13076#0 ATAATAAGAATTTGATGAGGCAGATGATTTCATTTAAACCTTTTTAGCACCAGACTGCTC 720 consensus_13076#1 ------------------------------------------------------------ consensus_13076#0 TACGGCGTCCTTGTTTATGAATGCACACATTTGGCCATCAAGCAGGTGGTAGTTTTTTCC 780 consensus_13076#1 ------------------------------------------------------------ consensus_13076#0 TTAGGGATTTTGTCCAAACAAAAAACTCATCGAGGCTTGACCTGTGCATTTCCTTCGGAG 840 consensus_13076#1 ------------------------------------------------------------ consensus_13076#0 CATCATCGAATAAAAGATGACTGCATCAGCTGCGTTTTTCTTGTGTATCCTAATGGCCAT 900 consensus_13076#1 --TCATCGAATAAAAGATGACTGCATCAGCTGCGTTTTTCTTGTGTATCCTAATGGCCAT 58 ********************************************************** consensus_13076#0 CTGGTGTGATGGACCTGTTCTATTCAGATCATGCAACAGTTTATTTTCAGTGCTCAGTGA 960 consensus_13076#1 CTGGTGTGATGGACCTGTTCTATTCAGATCATGCAACAGTTTATTTTCAAAAAAAAAAAA 118 ************************************************* * * consensus_13076#0 GTCCCTGTTTGCAAGCAGCCACTAAATCTTTAAAAAA----------------------- 997 consensus_13076#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 178 ** * * *** ****** consensus_13076#0 --------------------------------- consensus_13076#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 211 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||