These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13089#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2402 fasta sequence [CTCTCCCGATCCGCCGCTCTCTCTCTCGCGCAAAAGCGGCGACCAAGAGCGGGCGCCGCCGTGCCTCCTCCTCCGGCGAGACGCGCCACCACCGGACTCTTCCTCCGGCGAGAAGGGCACAGAAGCGCGGCGGTGACGCGGCGGCGCGCCGGTAGCACGGGCTCACAGCACCGGCGGAGGACAGGGGGGAGATCCAAGGCGACGCCACGCACCGGCGGAGGAGGCATTGAGGCGCAGATCCAAGGCAGCAAAGAATTTGGTTTGTTTCTTGATTTGGTTTGTTTCTCCACGCGCACAAAGAATTCTTGCTCCGGTAGTTTCTTCCCCACTGTAAGCTTGGTTCTGTGTTGTCCCGGTAGATTTATGTTGTTCTTGAGCGTTGAATCAGTGGAGGGATGGGTACACGCAGGTGCTAGGGTTCAATGGAGTTTCTGGTCTGTGGATTGTGAGAATGCACTGCAAGAGATGATTATGACTATCTATCTCCTTCTTGCTAGATTTGTTTTGCTGTTAAGTAGTATCACAGAGATTTGTCTTGCTGTATATAATTACTAGCTTATATACAGCTAGCACTGACTTGTTCATTTCATCGATACGCCGAAAGATCGATCCACATAACAGTATGTCTAATTAATTAATGGCAGCTTAGCTATAAGTTTTGCATATGCCATCAGAGATGATAAGAAATTCAGGATTCAGTTGATTTCACATCTTGTACAGTGTATTGTGCACAGCACTCATGGGTACTATTATAGCTATATGCAGACATGATGAGTACTAATATAGTAGTGGACAAGTACGTGTTGCACTGCATCTGCATGTGTACCCCTAATAATGTTATTATTCATTGTTTGCACAGTATATGGCATGATGATTTTTGTTTGCAAAGTACATTGTACAGATAAGATTTTTTAGTAGGCTGTTCATTGAAGTATTTTAGCTGATTTAACTGTTGTCTGTGCTAGTCAATCACTGAAGTGTAGTATATAACATGGCTGAATTGAAATTGTGTTTTGAATATGAGACAGTGAACCATCGCACATCAAAGAAATTGTTGCAATTAAACCTGTTTTGGTGTTCTTCCTGCTCTTATTGCAAGAAGAATTAGTGACCGTATTGAGATGTTTTTACGTACAGTATTGCTCCGCCAATTTTAGTGGCAGACCTGCTCATGCTGTCTTGCATAATTCTTTCTTGCCCCTTTTGTGTTTGCCATGATTCCCATCTTGCTCATTTTTTTTACTAATCAGTTGTTTTATTTTTTGTTGTAATTTTAGTCTTATTTTCTAACAAAAAAGTGATGGGCTCTGCAAACGAGCAAATTAAAAAGTTTTTACTAGAGGATGATGAACTATTTTTCGTATTGGTCCCTGCTATACTTGCAATGGGAAATATCATGTTAAGTTCTGGTTGATTGAGAATTTGAGATATTATTGTTGTCAGGTTCCCTATGATGCAGAATTTTCTATGTCAAGTTCCCTAGGATGCAGAATGTCTTACTTGTATGCAACATAGCATGAAAAACTTACTTGACTAGTACTGCATAGAATTTTGGAATACATGAAAAATATCAAAATAGCTCTCAAAATTATGGATGCATAATTCTGGTGTAGAATTCTAGAAGCAATACATAATTCTGAATCACTATCAGTTTTTAATGATCTTCCTGTCTCCAATGTTGTTAAGTGTCCATTAAAAACTCTGTTTGCAATTGTTTGGTGGTTATTTATCTGGTTGTATGCAATGGGAAATGATGCAGGAATTTTGACTTTGTATGCAGCATAGCATGAATAACTTACCTGAGTAGTACTGTAGAATTCTGGTAACATAATATAGTATGCATGTAGAAAGTACATTTGTCTAGCACATGAAAATAGCCCTCAAAATTCTGGATGCATAATTCTTGTATAGAATCCTGGAAGCATAATTGTGGATGCAATACATTAGCGCTTCAACGATGATTCACGAAATTTGTCCCTTGTTGTTTCTTGTGTTTTGATTTGCAACCATTAATTGAGAAAAAAATTGACAGATTGTCTATTGTGAAATTGCAGTTTTGGGGATCTACAAGTGACAAGAGTAAAGATTAAGACCAGTTGCACCGAGATGATTATTTGAAAATTCCAAGGATTATATATTTTCCACTTAACCTTTGTTTACATGTATGTCTATTTGTGTGCCAACTGTTAATGATTGCACATTAGTTGTTGAAAAGACATCACACTAATGTTTTAGCTTGCTTTATCTGTCATTTTAATGTATGCCTATGTAAAATATTCCAATCATCCAAGGTTCAATTTTTGTAATTTTTCATATTTTGTATTAGCTGAATGTTGAATTTTTCAAATTATTTGTGAATTTTCTGGATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK121710 [CTCTCCCGATCCGCCGCTCTCTCTCTCGCGCAAAAGCGGCGACCAAGAGCGGGCGCCGCCGTGCCTCCTCCTCCGGCGAGACGCGCCACCACCGGACTCTTCCTCCGGCGAGAAGGGCACAGAAGCGCGGCGGTGACGCGGCGGCGCGCCGGTAGCACGGGCTCACAGCACCGGCGGAGGACAGGGGGGAGATCCAAGGCGACGCCACGCACCGGCGGAGGAGGCATTGAGGCGCAGATCCAAGGCAGCAAAGAATTTGGTTTGTTTCTTGATTTGGTTTGTTTCTCCACGCGCACAAAGAATTCTTGCTCCGGTAGTTTCTTCCCCACTGTAAGCTTGGTTCTGTGTTGTCCCGGTAGATTTATGTTGTTCTTGAGCGTTGAATCAGTGGAGGGATGGGTACACGCAGGTGCTAGGGTTCAATGGAGTTTCTGGTCTGTGGATTGTGAGAATGCACTGCAAGAGATGATTATGACTATCTATCTCCTTCTTGCTAGATTTGTTTTGCTGTTAAGTAGTATCACAGAGATTTGTCTTGCTGTATATAATTACTAGCTTATATACAGCTAGCACTGACTTGTTCATTTCATCGATACGCCGAAAGATCGATCCACATAACAGTATGTCTAATTAATTAATGGCAGCTTAGCTATAAGTTTTGCATATGCCATCAGAGATGATAAGAAATTCAGGATTCAGTTGATTTCACATCTTGTACAGTGTATTGTGCACAGCACTCATGGGTACTATTATAGCTATATGCAGACATGATGAGTACTAATATAGTAGTGGACAAGTACGTGTTGCACTGCATCTGCATGTGTACCCCTAATAATGTTATTATTCATTGTTTGCACAGTATATGGCATGATGATTTTTGTTTGCAAAGTACATTGTACAGATAAGATTTTTTAGTAGGCTGTTCATTGAAGTATTTTAGCTGATTTAACTGTTGTCTGTGCTAGTCAATCACTGAAGTGTAGTATATAACATGGCTGAATTGAAATTGTGTTTTGAATATGAGACAGTGAACCATCGCACATCAAAGAAATTGTTGCAATTAAACCTGTTTTGGTGTTCTTCCTGCTCTTATTGCAAGAAGAATTAGTGACCGTATTGAGATGTTTTTACGTACAGTATTGCTCCGCCAATTTTAGTGGCAGACCTGCTCATGCTGTCTTGCATAATTCTTTCTTGCCCCTTTTGTGTTTGCCATGATTCCCATCTTGCTCATTTTTTTTACTAATCAGTTGTTTTATTTTTTGTTGTAATTTTAGTCTTATTTTCTAACAAAAAAGTGATGGGCTCTGCAAACGAGCAAATTAAAAAGTTTTTACTAGAGGATGATGAACTATTTTTCGTATTGGTCCCTGCTATACTTGCAATGGGAAATATCATGTTAAGTTCTGGTTGATTGAGAATTTGAGATATTATTGTTGTCAGGTTCCCTATGATGCAGAATTTTCTATGTCAAGTTCCCTAGGATGCAGAATGTCTTACTTGTATGCAACATAGCATGAAAAACTTACTTGACTAGTACTGCATAGAATTTTGGAATACATGAAAAATATCAAAATAGCTCTCAAAATTATGGATGCATAATTCTGGTGTAGAATTCTAGAAGCAATACATAATTCTGAATCACTATCAGTTTTTAATGATCTTCCTGTCTCCAATGTTGTTAAGTGTCCATTAAAAACTCTGTTTGCAATTGTTTGGTGGTTATTTATCTGGTTGTATGCAATGGGAAATGATGCAGGAATTTTGACTTTGTATGCAGCATAGCATGAATAACTTACCTGAGTAGTACTGTAGAATTCTGGTAACATAATATAGTATGCATGTAGAAAGTACATTTGTCTAGCACATGAAAATAGCCCTCAAAATTCTGGATGCATAATTCTTGTATAGAATCCTGGAAGCATAATTGTGGATGCAATACATTAGCGCTTCAACGATGATTCACGAAATTTGTCCCTTGTTGTTTCTTGTGTTTTGATTTGCAACCATTAATTGAGAAAAAAATTGACAGATTGTCTATTGTGAAATTGCAGTTTTGGGGATCTACAAGTGACAAGAGTAAAGATTAAGACCAGTTGCACCGAGATGATTATTTGAAAATTCCAAGGATTATATATTTTCCACTTAACCTTTGTTTACATGTATGTCTATTTGTGTGCCAACTGTTAATGATTGCACATTAGTTGTTGAAAAGGCATCACACTAATGTTTTAGCTTGCTTTATCTGTCATTTCAATGTATGCCTATGTAAAATATT ] [+] EMBL CB000322 [ GGGGATCAACAAGTGACAAGAGTAAAGATTACCCTCAGTTGCACCGAGATGATTATTTGAAAATTCCAAGGATTATATCTTTTCCACTTAACCTTTGCTTACATGTCTGTCTATTTGTGTGCCAACTGTTAATGATTGCACATTAGTTGTTGAAAAGACATCACACTAATGTTTTAGCTTGCTTTATCTGTCATTTTAATGTATGCCTATGTAAAATATTCCAATCATCCAAGGTTCAATTTTTGTAATTTTTCATATTTTGTATTAGCTGAATGTTGAATTTTTCAAATTATTTGTGAATTTTCTGGATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CB000388 [ AATGATTGCACATTAGTTGTTGAAAAGACATCACACTAATGTTTTAGCTTGCTTTATCTGTCATTTTAATGTATGCCTATGTAAAATATTCCAATCATCCAAGGTTCAATTTTTGTAATTTTTCATATTTTGTATTAGCTGAATGTTGAATTTTTCAAATTATTTGTGAATTTTCTGGATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_13089#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 673 fasta sequence [TTTTCCTCTCCCGATCCGCCGCTCTCTCGCGCAAAAGCAGCGACCAAGAGCGGGCGCCGCCGTGCCTCC-TCCTCCGGTGAGACGCGCCACCACCGGGACTCTTCCTCCGGCGAGAAGGATAAGCCCTTCTCCTCTTTCCCCTCCTCTCATCCTCCTAGGGTTCCCGTTCTCCTCCTCTAGGGTTTTCGCCTCCGTTCGGTCTCATCTCTCGCATCGCAGGCACAGAAACGCGGCGGTGACGCAGCGGCGCCTCGGCAGCACGGGCGCACAGCACCGGCGGAGGACCGGGGGGAGATCCAAGGTGGCGCGACGCACCGGCGGAGGAGGCGTTGAGGCGCAGATCCAAGTTTTGGGGATCAACAAGTGACAAGAGTAAAGATTAAGACCAGTTGCACCGAGATGATTATTTGAAAATTCCAAGGATTATATCTTTTCCACTTAACCTTTGCTTACATGTGTGTCTATTTGTGTGCCAACTGTTAATGATTGCACATTAGTTGTTGAAAAGACATCACACTAATGTTTTAGCTTGCTTTATCTGTCATTTTAATGTATGCCTATGTAAAATATTCCAATCATCCAAGGTTCAATTTTTGTAATTTTTCATATTTTGTATTAGCTGAATGTTGAATTTTTCAAATTATTTGTGAATTTTCTGGATTTTTACCAAAAA] [+] EMBL AK064066 [TTTTCCTCTCCCGATCCGCCGCTCTCTCGCGCAAAAGCAGCGACCAAGAGCGGGCGCCGCCGTGCCTCC TCCTCCGGTGAGACGCGCCACCACCGGGACTCTTCCTCCGGCGAGAAGGATAAGCCCTTCTCCTCTTTCCCCTCCTCTCATCCTCCTAGGGTTCCCGTTCTCCTCCTCTAGGGTTTTCGCCTCCGTTCGGTCTCATCTCTCGCATCGCAGGCACAGAAACGCGGCGGTGACGCAGCGGCGCCTCGGCAGCACGGGCGCACAGCACCGGCGGAGGACCGGGGGGAGATCCAAGGTGGCGCGACGCACCGGCGGAGGAGGCGTTGAGGCGCAGATCCAAGTTTTGGGGATCAACAAGTGACAAGAGTAAAGATTAAGACCAGTTGCACCGAGATGATTATTTGAAAATTCCAAGGATTATATCTTTTCCACTTAACCTTTGCTTACATGTGTGTCTATTTGTGTGCCAACTGTTAATGATTGCACATTAGTTGTTGAAAAGACATCACACTAATGTTTTAGCTTGCTTTATCTGTCATTTTAATGTATGCCTATGTAAAATATTCCAATCATCCAAGGTTCAATTTTTGTAATTTTTCAT ] [+] EMBL CB681873 [ GCAAAAGCAGCGACCAAGAGCGGGCGCCGCCGTGCCTCC TCCTCCGGTGAGACGCGCCACCACCGGGACTCTTCCTCCGGCGAGAAGGATAAGCCCTTCTCCTCTTTCCCCTCCTCTCATCCTCCTAGGGTTCCCGTTCTCCTCCTCTAGGGTTTTCGCCTCCGTTCGGTCTCATCTCTCGCATCGCAGGCACAGAAACGCGGCGGTGACGCAGCGGCGCCTCGGCAGCACGGGCGCACAGCACCGGCGGAGGACCGGGGGGAGATCCAAGGTGGCGCGACGCACCGGCGGAGGAGGCGTTGAGGCGCAGATCCAAGTTTTGGGGATCAACAAGTGACAAGAGTAAAGATTAAGACCAGTTGCACCGAGATGATTATTTGAAAATTCCAAGGATTATATCTTTTCCACTTAACCTTTGCTTACATGTGTGTCTATTTGTGTGCCAACTGTTAATGATTGCACATTAGTTGTTGAAAAGACATCACACTAATGTTTTAGCTTGCTTTATCTGTCATTTTAATGTATGCCTATGTAAAATATTCCAATCATCCAAGGTTCAATTTT ] [+] EMBL C98025 [ GCCGCCGTGCCTCCTTCCTCCGGTGAGACGCGCCACCACCGGGACTCTTCCTCCGGCGAGAAGGATAAGCCCTTCTCCTCTTTCCCCTCNTCTCATCCTCCTAGGGTTCCCGTTCTCCTCCTCTAGGGTTTTCGCCTCCGTTCGGTCTCATCTCTCGCATCGCAGGCACAGAAACGCGGCGGTGACGCAGCGGCGCCTCGGCAGCACGGGCGCACAGCACCGGCGGAGGACCGGGGGGAGATCCAAGGTGGCGCGACGCACCGGCGGAGGAGGCGTTGAGGCGCAGATCCAAGTTTTGGGGATCAACAAGTGACAAGAGTAAAGATTAAGACCAGTTGCACCGAGATGATTATTTGAAAATTCCAAGGATTATATCTTTTCCACTTAACCTTTGCTTACATGTGTGTCTATTTGTGTGCCAACTGTTAATGATTGCACATTAGTTGTTGAAAAGACATCACACTAATGTTTTAGCTTGCTTTATCTGTCATTTTAATGTATGCCTATGTAAAATATTCCAATCATCCAAGGTTCAATTTTTGTAATTTTTCATATTTTGTATTAGCTGAATGTTGAATTTTTCAAATTATTTGTGAATTTTCTGGATTTTTACCAAAAA] [+] EMBL OS0392A [ GCCG CGTNACTCC TCCTCCGGTGAGACGCGCCACCACCGGGACTCTTCCTCCGGCGAGAAGGATAAGCCCTTCTCCTCTTTCCCCTCCTCTCATCCTCCTAGGGTTCCCGTTCTCCTCCTCTAGGGTTTTCGCCTCCGTTCGGTCTCATCTCTCGCATCGCAGGCACAGAAACGCGGCGGTGACG AGCGGCGCCTCGGCAGCACGGGCGCACAGCACCGGCGGAGGACCGGGGGGAGATCCAAGGTGGCGCGACGAACCGGCGGAGGAGGCGTTGAGGCGCAGATCCAAGTTTTGGGGATCAACAAGTGAC ] [+] EMBL CB683550 [ GCGCCTTTGCAGCACGGGCGCACAGCACCGGCGGAGGACCGGGGGGAGATCCAAGGTGGCGCGACGCACCGGCGGAGGAGGCGTTGAGGCGCAGATCCAAGTTTTGGGGATCAACAAGTGACAAGAGTAAAGATTAAGACCAGTTGCACCGAGATGATTATTTGAAAATTCCAAGGATTATATCTTTTCCACTTAACCTTTGCTTACATGTGTGTCTATTTGTGTGCCAACTGTTAATGATTGCACATTAGTTGTTGAAAAGACATCACACTAATGTTTTAGCTTGCTTTATCTGTCATTTTAATGTATGCCTATGTAAAATATTCCAATCATCCAAGGTTCAATTTTTGTAATT ] consensusID : consensus_13089#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence [AGAGTAAAGATTAAGTCTAGTTCCACCGAGATGATTATTTGATACTTCCAAGGATTACATTTGCAAGCTTGCCGCAAAATGGCTTCCACTTAACCTTTGCTTACATGTATGTCTATTTGTGTCAACTGTTAATGATTGCACATTAGTTGTCGAAAAGACATTACACTGATGTTTTAGCTTACTTTATCTGTCATTTTAATGTATGCCTATGTAAAATATTCCAATCAACCAAGGTTCAATTTTTGTAATTTGTCATATTTTGTATTAGCTGAATGTTGAATTTTTCAAATTATTTGTGAATTTTCTGAATTTTCACCAGTTTTTCTATGCCTTTTCTATATGAATGTCTGAATTTTTGGAATTTTCTGTGGATATTCCGAATTCTGTATGAATTTTTTGAATTTATTTTGTTACCCTGATTTTCTTTTCCTGCTCATTAGTTATTGTGAGTTTCATTTTTTATCACGCTACGCATTTTAAACCCTAGCAGCTAGCATTTTCAAAGGAAAGGAGAGTGGAATTTCCCCTCGTGGGATTCCTTTCCAAATGAACGCAGAGCAACTTCCCTAGGGAAGGGAGGGAGTTCATATGTCACACGGAAAATCCCCT] [+] EMBL CB640135 [AGAGTAAAGATTAAGTCTAGTTCCACCGAGATGATTATTTGATACTTCCAAGGATTACATTTGCAAGCTTGCCGCAAAATGGCTTCCACTTAACCTTTGCTTACATGTATGTCTATTTGTGTCAACTGTTAATGATTGCACATTAGTTGTCGAAAAGACATTACACTGATGTTTTAGCTTACTTTATCTGTCATTTTAATGTATGCCTATGTAAAATATTCCAATCAACCAAGGTTCAATTTTTGTAATTTGTCATATTTTGTATTAGCTGAATGTTGAATTTTTCAAATTATTTGTGAATTTTCTGAATTTTCACCAGTTTTTCTATGCCTTTTCTATATGAATGTCTGAATTTTTGGAATTTTCTGTGGATATTCCGAATTCTGTATGAATTTTTTGAATTTATTTTGTTACCCTGATTTTCTTTTCCTGCTCATTAGTTATTGTGAGTTTCATTTTTTATCACGCTACGCATTTTAAACCCTAGCAGCTAGCATTTTCAAAGGAAAGGAGAGTGGAATTTCCCCTCGTGGGATTCCTTTCCAAATGAACGCAGAGCAACTTCCCTAGGGAAGGGAGGGAGTTCATATGTCACACGGAAAATCCCCT] consensusID : consensus_13089#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 513 fasta sequence [TTTTCTTCTCCCGATCCGCCGCTCTCTCTCTCGCGCAAAAGCGGCGACCAAGAGCGGGCGCCGCCGTGCCTCCTCCTCCGGCGAGACGCGCCACCACCGGACTCTTCCTCCGGCGAGAAGGGCACAGAAGCGCGGCGGTGACGCGGCGGCGCGCCGGTAGCACGGGCTCACAGCACCGGCGGAGGACAGGGGGGAGATCCAAGGCGACGCCACGCACCGGCGGAGGAGGCATTGAGGCGCAGATCCAAGGCAGCAAAGAATTTGTTTTGGGGATCTACAAGTGACAAGAGTAAAGATTAAGACCAGTTGCACCGAGATGATTATTTGAAAATTCCAAGGATTATATATTTTCCACTTAACCTTTGTTTACATGTATGTCTATTTGTGTGCCAACTGTTAATGATTGCACATTAGTTGTTGAAAAGGCATCACACTAATGTTTTAGCTTGCTTTATCTGTCATTTCAATGTATGCCTATGTAAAATATTCCAATCACCCAAGGTTCAGTTTTTT] [-] EMBL CB636959 [TTTTCTTCTCCCGATCCGCCGCTCTCTCTCTCGCGCAAAAGCGGCGACCAAGAGCGGGCGCCGCCGTGCCTCCTCCTCCGGCGAGACGCGCCACCACCGGACTCTTCCTCCGGCGAGAAGGGCACAGAAGCGCGGCGGTGACGCGGCGGCGCGCCGGTAGCACGGGCTCACAGCACCGGCGGAGGACAGGGGGGAGATCCAAGGCGACGCCACGCACCGGCGGAGGAGGCATTGAGGCGCAGATCCAAGGCAGCAAAGAATTTGTTTTGGGGATCTACAAGTGACAAGAGTAAAGATTAAGACCAGTTGCACCGAGATGATTATTTGAAAATTCCAAGGATTATATATTTTCCACTTAACCTTTGTTTACATGTATGTCTATTTGTGTGCCAACTGTTAATGATTGCACATTAGTTGTTGAAAAGGCATCACACTAATGTTTTAGCTTGCTTTATCTGTCATTTCAATGTATGCCTATGTAAAATATTCCAATCACCCAAGGTTCAGTTTTTT] [-] EMBL CB636862 [ GACCAAGAGCGGGCGCCGCCGTGCCTCCTCCTCCGGCGAGACGCGCCACCACCGGACTCTTCCTCCGGCGAGAAGGGCACAAAAGCGCGGCGGTGACGCGGCGGCGCGCCGGTAGCACGGGCTCACAGCACCGGCGGAGGACAGGGGGGAGATCCAAGGCGACGCCACGCACCGGCGGAGGAGGCATTGAGGCGCAGATCCAAGGCAGCAAAGAATTTGTTTTGGGGATCTACAAGTGACAAGAGTAAAGATTAAGACCAGTTGCACCGAGATGATTATTTGAAAATTCCAAGGATTATATATTTTCCACTAAACATTTGTTTACATGTATGTCTATTTGTGTGCCAACTGTTAATGATTGCACATTAGTTGTTGAAAAGGCATCACACTAATGTTTTAGCTTGCTTTATCTGTCATTTCAATGTAGGCCTATGTAAAATAGTCCAATCATCCAAGGTTCAGTTTata] consensusID : consensus_13089#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 312 fasta sequence [GAAACGCGGCGGTGACGAGCGGCGCCTCGGCAGCACGGGCGCACAGCACCGGCGNAGGACCGGGGGGAGATCCAAGGTGGCGCGAAGCACCGGCGGNGGAGGCGTNGNGGCGCNGATCCNAGTTTTNGGGNTCAACAAGGGACAAGAGTAAAGNTTAAGANCAGTTGCACCGAGATGNTTATTTNCGAATTCCAAGNNTTATATATTNNCCACTTTAACCTNTGCTTACATGTGGTGTCTATTTNTGTGCNAACTGGTTAATGCTTTGCACATTAGTTNGTTTNAANAAGACNTCCACACTTNATGTTTTNA] [+] EMBL OSC19801 [GAAACGCGGCGGTGACGAGCGGCGCCTCGGCAGCACGGGCGCACAGCACCGGCGNAGGACCGGGGGGAGATCCAAGGTGGCGCGAAGCACCGGCGGNGGAGGCGTNGNGGCGCNGATCCNAGTTTTNGGGNTCAACAAGGGACAAGAGTAAAGNTTAAGANCAGTTGCACCGAGATGNTTATTTNCGAATTCCAAGNNTTATATATTNNCCACTTTAACCTNTGCTTACATGTGGTGTCTATTTNTGTGCNAACTGGTTAATGCTTTGCACATTAGTTNGTTTNAANAAGACNTCCACACTTNATGTTTTNA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13089#1 ------------------------------------------------------------ consensus_13089#3 ------------------------------------------------------------ consensus_13089#4 ------------------------------------------------------------ consensus_13089#0 CTCTCCCGATCCGCCGCTCTCTCTCTCGCGCAAAAGCGGCGACCAAGAGCGGGCGCCGCC 60 consensus_13089#2 ------------------------------------------------------------ consensus_13089#1 ------------------------------------------------------------ consensus_13089#3 ------------------------------------------------------------ consensus_13089#4 ------------------------------------------------------------ consensus_13089#0 GTGCCTCCTCCTCCGGCGAGACGCGCCACCACCGGACTCTTCCTCCGGCGAGAAGGGCAC 120 consensus_13089#2 ------------------------------------------------------------ consensus_13089#1 ------------------------------------------------------------ consensus_13089#3 ------------------------------------------------------------ consensus_13089#4 ------------------------------------------------------------ consensus_13089#0 AGAAGCGCGGCGGTGACGCGGCGGCGCGCCGGTAGCACGGGCTCACAGCACCGGCGGAGG 180 consensus_13089#2 ------------------------------------------------------------ consensus_13089#1 ------------------------------------------------------------ consensus_13089#3 ------------------------------------------------------------ consensus_13089#4 ------------------------------------------------------------ consensus_13089#0 ACAGGGGGGAGATCCAAGGCGACGCCACGCACCGGCGGAGGAGGCATTGAGGCGCAGATC 240 consensus_13089#2 ------------------------------------------------------------ consensus_13089#1 ------------------------------------------------------------ consensus_13089#3 ------------------------------------------------------------ consensus_13089#4 ------------------------------------------------------------ consensus_13089#0 CAAGGCAGCAAAGAATTTGGTTTGTTTCTTGATTTGGTTTGTTTCTCCACGCGCACAAAG 300 consensus_13089#2 ------------------------------------------------------------ consensus_13089#1 ------------------------------------------------------------ consensus_13089#3 ------------------------------------------------------------ consensus_13089#4 ------------------------------------------------------------ consensus_13089#0 AATTCTTGCTCCGGTAGTTTCTTCCCCACTGTAAGCTTGGTTCTGTGTTGTCCCGGTAGA 360 consensus_13089#2 ------------------------------------------------------------ consensus_13089#1 ------------------------------------------------------------ consensus_13089#3 ------------------------------------------------------------ consensus_13089#4 ------------------------------------------------------------ consensus_13089#0 TTTATGTTGTTCTTGAGCGTTGAATCAGTGGAGGGATGGGTACACGCAGGTGCTAGGGTT 420 consensus_13089#2 ------------------------------------------------------------ consensus_13089#1 ------------------------------------------------------------ consensus_13089#3 ------------------------------------------------------------ consensus_13089#4 ------------------------------------------------------------ consensus_13089#0 CAATGGAGTTTCTGGTCTGTGGATTGTGAGAATGCACTGCAAGAGATGATTATGACTATC 480 consensus_13089#2 ------------------------------------------------------------ consensus_13089#1 ------------------------------------------------------------ consensus_13089#3 ------------------------------------------------------------ consensus_13089#4 ------------------------------------------------------------ consensus_13089#0 TATCTCCTTCTTGCTAGATTTGTTTTGCTGTTAAGTAGTATCACAGAGATTTGTCTTGCT 540 consensus_13089#2 ------------------------------------------------------------ consensus_13089#1 ------------------------------------------------------------ consensus_13089#3 ------------------------------------------------------------ consensus_13089#4 ------------------------------------------------------------ consensus_13089#0 GTATATAATTACTAGCTTATATACAGCTAGCACTGACTTGTTCATTTCATCGATACGCCG 600 consensus_13089#2 ------------------------------------------------------------ consensus_13089#1 ------------------------------------------------------------ consensus_13089#3 ------------------------------------------------------------ consensus_13089#4 ------------------------------------------------------------ consensus_13089#0 AAAGATCGATCCACATAACAGTATGTCTAATTAATTAATGGCAGCTTAGCTATAAGTTTT 660 consensus_13089#2 ------------------------------------------------------------ consensus_13089#1 ------------------------------------------------------------ consensus_13089#3 ------------------------------------------------------------ consensus_13089#4 ------------------------------------------------------------ consensus_13089#0 GCATATGCCATCAGAGATGATAAGAAATTCAGGATTCAGTTGATTTCACATCTTGTACAG 720 consensus_13089#2 ------------------------------------------------------------ consensus_13089#1 ------------------------------------------------------------ consensus_13089#3 ------------------------------------------------------------ consensus_13089#4 ------------------------------------------------------------ consensus_13089#0 TGTATTGTGCACAGCACTCATGGGTACTATTATAGCTATATGCAGACATGATGAGTACTA 780 consensus_13089#2 ------------------------------------------------------------ consensus_13089#1 ------------------------------------------------------------ consensus_13089#3 ------------------------------------------------------------ consensus_13089#4 ------------------------------------------------------------ consensus_13089#0 ATATAGTAGTGGACAAGTACGTGTTGCACTGCATCTGCATGTGTACCCCTAATAATGTTA 840 consensus_13089#2 ------------------------------------------------------------ consensus_13089#1 ------------------------------------------------------------ consensus_13089#3 ------------------------------------------------------------ consensus_13089#4 ------------------------------------------------------------ consensus_13089#0 TTATTCATTGTTTGCACAGTATATGGCATGATGATTTTTGTTTGCAAAGTACATTGTACA 900 consensus_13089#2 ------------------------------------------------------------ consensus_13089#1 ------------------------------------------------------------ consensus_13089#3 ------------------------------------------------------------ consensus_13089#4 ------------------------------------------------------------ consensus_13089#0 GATAAGATTTTTTAGTAGGCTGTTCATTGAAGTATTTTAGCTGATTTAACTGTTGTCTGT 960 consensus_13089#2 ------------------------------------------------------------ consensus_13089#1 ------------------------------------------------------------ consensus_13089#3 ------------------------------------------------------------ consensus_13089#4 ------------------------------------------------------------ consensus_13089#0 GCTAGTCAATCACTGAAGTGTAGTATATAACATGGCTGAATTGAAATTGTGTTTTGAATA 1020 consensus_13089#2 ------------------------------------------------------------ consensus_13089#1 ------------------------------------------------------------ consensus_13089#3 ------------------------------------------------------------ consensus_13089#4 ------------------------------------------------------------ consensus_13089#0 TGAGACAGTGAACCATCGCACATCAAAGAAATTGTTGCAATTAAACCTGTTTTGGTGTTC 1080 consensus_13089#2 ------------------------------------------------------------ consensus_13089#1 ------------------------------------------------------------ consensus_13089#3 ------------------------------------------------------------ consensus_13089#4 ------------------------------------------------------------ consensus_13089#0 TTCCTGCTCTTATTGCAAGAAGAATTAGTGACCGTATTGAGATGTTTTTACGTACAGTAT 1140 consensus_13089#2 ------------------------------------------------------------ consensus_13089#1 ------------------------------------------------------------ consensus_13089#3 ------------------------------------------------------------ consensus_13089#4 ------------------------------------------------------------ consensus_13089#0 TGCTCCGCCAATTTTAGTGGCAGACCTGCTCATGCTGTCTTGCATAATTCTTTCTTGCCC 1200 consensus_13089#2 ------------------------------------------------------------ consensus_13089#1 ------------------------------------------------------------ consensus_13089#3 ------------------------------------------------------------ consensus_13089#4 ------------------------------------------------------------ consensus_13089#0 CTTTTGTGTTTGCCATGATTCCCATCTTGCTCATTTTTTTTACTAATCAGTTGTTTTATT 1260 consensus_13089#2 ------------------------------------------------------------ consensus_13089#1 ------------------------------------------------------------ consensus_13089#3 ------------------------------------------------------------ consensus_13089#4 ------------------------------------------------------------ consensus_13089#0 TTTTGTTGTAATTTTAGTCTTATTTTCTAACAAAAAAGTGATGGGCTCTGCAAACGAGCA 1320 consensus_13089#2 ------------------------------------------------------------ consensus_13089#1 ------------------------------------------------------------ consensus_13089#3 ------------------------------------------------------------ consensus_13089#4 ------------------------------------------------------------ consensus_13089#0 AATTAAAAAGTTTTTACTAGAGGATGATGAACTATTTTTCGTATTGGTCCCTGCTATACT 1380 consensus_13089#2 ------------------------------------------------------------ consensus_13089#1 ------------------------------------------------------------ consensus_13089#3 ------------------------------------------------------------ consensus_13089#4 ------------------------------------------------------------ consensus_13089#0 TGCAATGGGAAATATCATGTTAAGTTCTGGTTGATTGAGAATTTGAGATATTATTGTTGT 1440 consensus_13089#2 ------------------------------------------------------------ consensus_13089#1 ------------------------------------------------------------ consensus_13089#3 ------------------------------------------------------------ consensus_13089#4 ------------------------------------------------------------ consensus_13089#0 CAGGTTCCCTATGATGCAGAATTTTCTATGTCAAGTTCCCTAGGATGCAGAATGTCTTAC 1500 consensus_13089#2 ------------------------------------------------------------ consensus_13089#1 ------------------------------------------------------------ consensus_13089#3 ------------------------------------------------------------ consensus_13089#4 ------------------------------------------------------------ consensus_13089#0 TTGTATGCAACATAGCATGAAAAACTTACTTGACTAGTACTGCATAGAATTTTGGAATAC 1560 consensus_13089#2 ------------------------------------------------------------ consensus_13089#1 ------------------------------------------------------------ consensus_13089#3 ------------------------------------------------------------ consensus_13089#4 ------------------------------------------------------------ consensus_13089#0 ATGAAAAATATCAAAATAGCTCTCAAAATTATGGATGCATAATTCTGGTGTAGAATTCTA 1620 consensus_13089#2 ------------------------------------------------------------ consensus_13089#1 ------------------------------------------------------------ consensus_13089#3 ------------------------------------------------------------ consensus_13089#4 ------------------------------------------------------------ consensus_13089#0 GAAGCAATACATAATTCTGAATCACTATCAGTTTTTAATGATCTTCCTGTCTCCAATGTT 1680 consensus_13089#2 ------------------------------------------------------------ consensus_13089#1 --------------------TTTTCCTCTCCCGATCCGCCGCTCTCTC----GCGCAAAA 36 consensus_13089#3 --------------------TTTTCTTCTCCCGATCCGCCGCTCTCTCTCTCGCGCAAAA 40 consensus_13089#4 ------------------------------------------------------------ consensus_13089#0 GTTAAGTGTCCATTAAAAACTCTGTTTGCAATTGTTTGGTGGTTATTTATCTGGTTGTAT 1740 consensus_13089#2 ------------------------------------------------------------ consensus_13089#1 GCAGCGACCAAGAGCGGGCGCCGCCGTGCCTCCTCCTCCG-GTGAGACGCGCCACCACCG 95 consensus_13089#3 GCGGCGACCAAGAGCGGGCGCCGCCGTGCCTCCTCCTCCG-GCGAGACGCGCCACCACCG 99 consensus_13089#4 ------------------------------------------------------------ consensus_13089#0 GCAATGGGAAATGATGCAGGAATTTTGACTTTGTATGCAGCATAGCATGAATAACTTACC 1800 consensus_13089#2 ------------AGAGTAAAGATTAAGTCTAGTTCCACCGAGATGATTATTTGATACTTC 48 consensus_13089#1 GGACTCTTCCTCCGGCGAGAAGGATAAGCCCTTCTCCTCTTTCCCCTCCTCTCATCCTCC 155 consensus_13089#3 G-ACTCTTCCTCCGGCGAGAAGG------------------------------------- 121 consensus_13089#4 ------------------------------------------------------------ consensus_13089#0 TGAGTAGTACTGTAGAATTCTGGTAACATAATATAGTATGCATGTAGAAAGTACATTTGT 1860 consensus_13089#2 CAAGGATTACATTTGCAAGCTTGCCGCAAAATGGCTTCCACTTAACCTTTGCTTACATGT 108 consensus_13089#1 TAGGGTTCCCGTTCTCCTCCTCTAGGGTTTTCGCCTCCGTTCGGTCTCATCTCTCGCATC 215 consensus_13089#3 ------------------------------------------------------------ consensus_13089#4 ------------------------------------------------------------ consensus_13089#0 CTAGCACATGAAAATAGCCCTCAAAATTCTGGATGCATAAT-----TCTTGTATAGAATC 1915 consensus_13089#2 ATGTCTATTTGTGTCAACTGTTAATG-------------------------------ATT 137 consensus_13089#1 GCAGGCACAGAAACGCGGCGGTGACGCAGCGGCGCCTCGGCAGCACGGGCGCACAGCACC 275 consensus_13089#3 ----GCACAGAAGCGCGGCGGTGACGCGGCGGCGCGCCGGTAGCACGGGCTCACAGCACC 177 consensus_13089#4 ---------GAAACGCGGCGGTGACG-AGCGGCGCCTCGGCAGCACGGGCGCACAGCACC 50 consensus_13089#0 CTGGAAGCATAATTGTGGATGCAATACATTAGCGCTTCAACGAT---GATTCACGAAATT 1972 consensus_13089#2 GCACATTAGTTGTCGAAAAGACATTACACTGATGTTTTAGCTTACTTTATCTGTCATTTT 197 * * consensus_13089#1 GGCGGAGGACCGGGGG--GAGATCCAAGGTGGCGCGACGCACCGGCGGAGGAGGCGTTGA 333 consensus_13089#3 GGCGGAGGACAGGGGG--GAGATCCAAGGCGACGCCACGCACCGGCGGAGGAGGCATTGA 235 consensus_13089#4 GGCGNAGGACCGGGGG--GAGATCCAAGGTGGCGCGAAGCACCGGCGGNGGAGGCGTNGN 108 consensus_13089#0 TGTCCCTTGTTGTTTCTTGTGTTTTGATTTGCAACCATTAATTGAGAAAAAAATTGACAG 2032 consensus_13089#2 AATGTATGCCTATGTAAAATATTCCAATCAACCAAGGTTCAATTTTTGTA-ATTTGTCAT 256 * * * * consensus_13089#1 GGCGCAGATCCAAG---------------TTTTGGGGATCAACAAGTGACAAGAGTAAAG 378 consensus_13089#3 GGCGCAGATCCAAGGCAGCAAAGAATTTGTTTTGGGGATCTACAAGTGACAAGAGTAAAG 295 consensus_13089#4 GGCGCNGATCCNAG---------------TTTTNGGGNTCAACAAGGGACAAGAGTAAAG 153 consensus_13089#0 ATTGTCTATTGTGA-------AATTGCAGTTTTGGGGATCTACAAGTGACAAGAGTAAAG 2085 consensus_13089#2 ATTTTGTATTAGCTG------AATGTTGAATTTTTCAAATTATTTGTG--AATTTTCTGA 308 ** *** * * * ** * consensus_13089#1 ATTAAGACCAGTTGCACCGAGATGATTATTTGAAAAT-TCCAAGGATTATATCTTTTCC- 436 consensus_13089#3 ATTAAGACCAGTTGCACCGAGATGATTATTTGAAAAT-TCCAAGGATTATATATTTTCC- 353 consensus_13089#4 NTTAAGANCAGTTGCACCGAGATGNTTATTTNCGAAT-TCCAAGNNTTATATATTNNCC- 211 consensus_13089#0 ATTAAGACCAGTTGCACCGAGATGATTATTTGAAAAT-TCCAAGGATTATATATTTTCC- 2143 consensus_13089#2 ATTTTCACCAGTTTTTCTATGCCTTTTCTATATGAATGTCTGAATTTTTGGAATTTTCTG 368 ** * ***** * * ** * * *** ** * ** ** * consensus_13089#1 -----ACTT-AACCTTTGCTTACATGTG-TG--TCTATTTGTGTGCCAACTG-TTAATGA 486 consensus_13089#3 -----ACTT-AACCTTTGTTTACATGTA-TG--TCTATTTGTGTGCCAACTG-TTAATGA 403 consensus_13089#4 -----ACTTTAACCTNTGCTTACATGTGGTG--TCTATTTNTGTGCNAACTGGTTAATGC 264 consensus_13089#0 -----ACTT-AACCTTTGTTTACATGTA-TG--TCTATTTGTGTGCCAACTG-TTAATGA 2193 consensus_13089#2 TGGATATTCCGAATTCTGTATGAATTTTTTGAATTTATTTTGTTACCCTGATTTTCTTTT 428 * * * * ** * ** * ** * ***** * * ** * consensus_13089#1 TT-GCACATTAGTTG---TTGAAAAGACATC-----ACACT-AATGTTTTAGCTTGCTTT 536 consensus_13089#3 TT-GCACATTAGTTG---TTGAAAAGGCATC-----ACACT-AATGTTTTAGCTTGCTTT 453 consensus_13089#4 TTTGCACATTAGTTNGTTTNAANAAGACNTCC----ACACTTNATGTTTTNA-------- 312 consensus_13089#0 TT-GCACATTAGTTG---TTGAAAAGACATC-----ACACT-AATGTTTTAGCTTGCTTT 2243 consensus_13089#2 CCTGCTCATTAGTTATTGTGAGTTTCATTTTTTATCACGCTACGCATTTTAAACCCTAGC 488 ** ******** * * ** ** **** consensus_13089#1 ATCTGTCATTTTAATGTATGCCTATGTAAAATATTCCAATCATCCAAGGTTCAATTTTTG 596 consensus_13089#3 ATCTGTCATTTCAATGTATGCCTATGTAAAATATTCCAATCACCCAAGGTTCAGTTTTTT 513 consensus_13089#4 ------------------------------------------------------------ consensus_13089#0 ATCTGTCATTTTAATGTATGCCTATGTAAAATATTCCAATCATCCAAGGTTCAATTTTTG 2303 consensus_13089#2 AGCTAGCATTTTCAAAGGAAAGGAGAGTGGAATTTCCCCTCGTGGGAT-TCCTTTCCAAA 547 consensus_13089#1 TAATTTTTCATATTTTGTATTAGCTGAATGTTGAATTTTTCAAATTATTTGTGAATTTTC 656 consensus_13089#3 ------------------------------------------------------------ consensus_13089#4 ------------------------------------------------------------ consensus_13089#0 TAATTTTTCATATTTTGTATTAGCTGAATGTTGAATTTTTCAAATTATTTGTGAATTTTC 2363 consensus_13089#2 TGAACGCAGAGCAACTTCCCTAGGGAAGGGAGGGAGTTCATATGTCACACGGAAAATCCC 607 consensus_13089#1 TGGATTTTTACCAAAAA---------------------- 673 consensus_13089#3 --------------------------------------- consensus_13089#4 --------------------------------------- consensus_13089#0 TGGATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2402 consensus_13089#2 CT------------------------------------- 609 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||