These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13090#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 691 fasta sequence [ATCCCTCGCCTCCTCTTCCTCCTCCCCGAGCTCGAGTCCGAGAGCCTCCGATTCGGCAGCGATGGCGCTGGAGTGGGTGGTGCTTGGGTACGCGGCGGGAGCGGAGGCGATCATGCTGCTGCTGCTGACGCTGCCGGGGCTGGACGGGCTCCGGCGGGGGATGATCTCCGTGGTGCGGAGCGCGCTGAAGCCGATGATGTCGGTGGTGCCCTTCTGCCTCTTCCTGCTGATGGACATCTACTGGAAGTACGAGACGCGGCCCACCTGCGACGACGAGCACCACTGCACCCCGTCCGAGCACCTCCGCCACCAGAAGTCCATCATGAAGTCGCAGCGCAACGCGCTCC-TCATCGCCGCCGCGCTGCTCCTCTACTGGATCCTCTTCTCCATCACCTCCCTCGTCGTCAGGCTCGACCAGCTCCAGCAGCGCGTCGACAAGCTCAAGAAGCGGGACGACTGATCTGATCCTGCTACCCCTCCCTGATTCAGCGCGTCGACTGACCTGACCGGTGGCTTCGCTGTTTCTTCCCTACTCGTTTGTGTTCTTAGATATATCATGTGATGCGTGTTGCTGTGTTTTTTTGTAGTATGGATATGGATGCTTGAGATCGTGATGCGGATTTGAGCGTTCTATTATTTGCTTCAGATCTAGTTTGAGTAAATTCTGGTCTTTTATGCTAAAAAAAAAAAA] [+] EMBL CF297707 [ATCCCTCGCCTCCTCTTCCTCCTCCCCGAGCTCGAGTCCGAGAGCCTCCGATTCGGCAGCGATGGCGCTGGAGTGGGTGGTGCTTGGGTACGCGGCGGGAGCGGAGGCGATCATGCTGCTGCTGCTGACGCTGCCGGGGCTGGACGGGCTCCGGCGGGGGATGATCTCCGTGGTGCGGAGCGCGCTGAAGCCGATGATGTCGGTGGTGCCCTTCTGCCTCTTCCTGCTGATGGACATCTACTGGAAGTACGAGACGCGGCCCACCTGCGACGACGAGCACCACTGCACCCCGTCCGAGCACCTCCGCCACCAGAAGTCCATCATGAAGTCGCAGCGCAACGCGCTCC TCATCGCCGCCGCGCTGCTCCTCTACTGGATCCTCTTCTCCATCACCTCCCTCGTCGTCAGGCTCGACCAGCTCCAGCAGCGCGTCGACAAGCTCAAGAAGCGGGACGACTGATCTGATCCTGCTACCCCTCCCTGATTCAGCGCGTCGACTGACCTGACCGGTGGCTTCGCTGTTTCTTCCCTACTCGTTTGTGTTCTTAGATATATCATGTGATGCGTG ] [+] EMBL AK059269 [ TCTTCCTCCTCCCCGAGCTCGAGTCCGAGAGCCTCCGATTCGGCAGCGATGGCGCTGGAGTGGGTGGTGCTTGGGTACGCGGCGGGAGCGGAGGCGATCATGCTGCTGCTGCTGACGCTGCCGGGGCTGGACGGGCTCCGGCGGGGGATGATCTCCGTGGTGCGGAGCGCGCTGAAGCCGATGATGTCGGTGGTGCCCTTCTGCCTCTTCCTGCTGATGGACATCTACTGGAAGTACGAGACGCGGCCCACCTGCGACGACGAGCACCACTGCACCCCGTCCGAGCACCTCCGCCACCAGAAGTCCATCATGAAGTCGCAGCGCAACGCGCTCC TCATCGCCGCCGCGCTGCTCCTCTACTGGATCCTCTTCTCCATCACCTCCCTCGTCGTCAGGCTCGACCAGCTCCAGCAGCGCGTCGACAAGCTCAAGAAGCGGGACGACTGATCTGATCCTGCTACCCCTCCCTGATTCAGCGCGCCGACTGACCTGACCGGTGGCTTCGCTGTTTCTTCCCTACTCGTTTGTGTTCTTAGATATATCATGTGATGCGTGTTGCTGTGTTTTTTTGTAGTATGGATATGGATGCTTGAGATCGTGATGCGGATTTGAGCGTTCTAT ] [+] EMBL AU031312 [ GGCAGCGATGGCGCTGGAGTGGGTGGTGCTTGGGTACGCGGCGGGAGCGGAGGCGATCATGCTGCTGCTGCTGACGCTGCCGGGGCTGGACGGGCTCCGGCGGGGGATGATCTCCGTGGTGCGGA CGCGCTGAAGCCGATGATGTCGGTGGTGCCCTTCTGCCTCTTCCTGCTGATGGACATCTACTGGAAGTACGAGACGCGGCCCACCNGCGACGACGAGCACCACTGCACCCCGTCCGAGCACNTCCGCCACCAGAAGTCCATCATGAAGTCGCAGCGCAACGCG TCC TCATCGCCGCCGCGCTGCTCCTCTACTGGATCCTCTTCTCCATCACCTCCCTCGTCGTCAGGCTCGACCAGCTCCAGCAGCGCGTCGACAAGCTCAAGAAGCGGGACGACTGATCTGATCCTGCTACCCCTCCCTGATTCAGCGCGTCGACNGACCTGACCGGTGGCTTCGCTGTTTCTTCCCTACTCGTTTGTGTTCTTAGATATATCATGTGATGCGTGTTGCTGTGTTTTTTTGTAGTATGGATATGGATGCTTGAGATCGTGATGCGGATTTGAGCGTTCTATTATTTGCTTCA ] [-] EMBL CF297708 [ ctcCCGCCACCAGAAGTCCATCATGAAGTCGCAGCGCAACGCGCTCC TCATCGCCGCCGCGCTGCTCCTNTACTGGATCCTCTTCTCCATCACCTCCCTCGTCGTCAGGCTCGACCAGCTCCAGCAGCGCGTCGACAAGCTCAAGAAGCGGGACGACTGATCTGATCCTGCTACCCCTCCCTGATTCAGCGCGTCGACTGACCTGACCGGTGGCTTCGCTGTTTCTTCCCTACTCGTTTGTGTTCTTAGATATATCATGTGATGCGTGTTGCTGTGTTTTTTTGTAGTATGGATATGGATGCTTGAGATCGTGACGCGGATTTGAGCGTTCTATTATTTGCTTCAGATCTAGTTTGAGTAAATTCTGGTCTTTTATGCTAAAAAAA ] [+] EMBL AU108773 [ gTCCTTCATCGCCGCCGCGCTGCTCCTCTACTGGATCCTCTTCTCCATCACCTCCCTCGTCGTCAGGCTCGACCAGCTCCAGCAGCGCGTCGACAAGCTCAAGAAGCGGGACGACTGATCTGATCCTGCTACCCCTCCCTGATTCAGCGCGTCGACTGACCTGACCGGTGGCTTCGCTGTTTCTTCCCTACTCGTTTGTGTTCTTAGATATATCATGTGATGCGTGTTGCTGTGTTTTTTTGTAGTATGGATATGGATGCTTGAGATCGTGATGCGGATTTGAGCGTTCTATTATTTGCTTCAGATCTAGTTTGAGTAAATTCTGGTCTTTTATGCTAAAAAAAAAAAA] consensusID : consensus_13090#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 610 fasta sequence [CCCTCGCCTCCTCTTCCTCCTCCCCGAGCTCGAGTCCGAGAGCCTCCGATTCGGCAGCGATGGCGCTGGAGTGGGTGGTGCTTGGGTACGCGGCGGGAGCGGAGGCGATCATGCTGCTGCTGCTGACGCTGCCGGGGCTGGACGGGCTCCGGCGGGGGATGATCTCCGTGGTGCGGAGCGCGCTGAAGCCGATGATGTCGGTGGTGCCCTTCTGCCTCTTCCTGCTGATGGACATCTACTGGAAGTACGAGACGCGGCCCACCTGCGACGACGAGCACCACTGCACCCCGTCCGAGCACCTCCGCCACCAGAAGTCCATCATGAAGTCGCAGCGCAACGCGCTCCTCATCGCCGCCGCGCTGGCTCCTCTACTGGATCCTCTTCTCGATCACCTCCTTCGGCGTCAGGTTCGACCAGCTCCCGCAGCGCGTCGACGAGTTCAGGAAGCGGGAAGACGGATCTGATCCCTGCTACCCCTCCCTGATTCAGGGGGTCGAAAGGACCTGACCGGGGGCTTCCGTGGGTTTTTCCTACCCGTTGGGGGTCTTACATTTTAAGGGGAGGCCGGTTGCTGGGTTTTTTTCGCAACAGGCTATGGAGGCCTGAGAAT] [+] EMBL CA758811 [CCCTCGCCTCCTCTTCCTCCTCCCCGAGCTCGAGTCCGAGAGCCTCCGATTCGGCAGCGATGGCGCTGGAGTGGGTGGTGCTTGGGTACGCGGCGGGAGCGGAGGCGATCATGCTGCTGCTGCTGACGCTGCCGGGGCTGGACGGGCTCCGGCGGGGGATGATCTCCGTGGTGCGGAGCGCGCTGAAGCCGATGATGTCGGTGGTGCCCTTCTGCCTCTTCCTGCTGATGGACATCTACTGGAAGTACGAGACGCGGCCCACCTGCGACGACGAGCACCACTGCACCCCGTCCGAGCACCTCCGCCACCAGAAGTCCATCATGAAGTCGCAGCGCAACGCGCTCCTCATCGCCGCCGCGCTGGCTCCTCTACTGGATCCTCTTCTCGATCACCTCCTTCGGCGTCAGGTTCGACCAGCTCCCGCAGCGCGTCGACGAGTTCAGGAAGCGGGAAGACGGATCTGATCCCTGCTACCCCTCCCTGATTCAGGGGGTCGAAAGGACCTGACCGGGGGCTTCCGTGGGTTTTTCCTACCCGTTGGGGGTCTTACATTTTAAGGGGAGGCCGGTTGCTGGGTTTTTTTCGCAACAGGCTATGGAGGCCTGAGAAT] consensusID : consensus_13090#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 475 fasta sequence [CCGCTTGGGTACGCGGCGGGAG-CGGAGGCGATCATGCTGCTGCTGCTGACGCTACTGGATCCTCTTCTCCGTCACCTCCCTCGTCGT-CAGGCTCGACCAGCTC-CAGCAGCGC-GTC-GACAAGCTC-AAGAAG-CGGGACGACTGATCTGATCCTGCTACCCCT-CCCTGATTCAGCGCGTCGACTGACCTGACCGGTGGCTTCGCTGTTTCTTCCCTACTCGTTTGTGTTCTTAGATATATCATGTGATGCGTGTTGCTGTGTTTTTTTGTAGTATGGATATGGATGCTTGAGATCGTGATGCGGA-TTTGAGCGTTCTATTATTTGCTTCAGATCTAGTTTGAGTAAAAACTGGTCTTTTATGCCCCGAAGGACATGATACATCATTTCTCCCAAAAAAAAAAAAGTTGCAAATGTGAGACTCTAGGTTATTTTTGGATTAGTGGGCATAATAGTTTTTACCTGTTTTATCCCGAAAAA] [+] EMBL BI799344 [CCGCTTGGGTACGCGGCGGGAG CGGAGGCGATCATGCTGCTGCTGCTGACGCTACTGGATCCTCTTCTCCGTCACCTCCCTCGTCGT CAGGCTCGACCAGCTC CAGCAGCGC GTC GACAAGCTC AAGAAG CGGGACGACTGATCTGATCCTGCTACCCCT CCCTGATTCAGCGCGTCGACTGACCTGACCGGTGGCTTCGCTGTTTCTTCCCTACTCGTTTGTGTTCTTAGATATATCATGTGATGCGTGTTGCTGTGTTTTTTTGTAGTATGGATATGGATGCTTGAGATCGTGATGCGGA TTTGAGCGTTCTATTATTTGCTTCAGATCTAGTTTGAGTAAAAA ] [+] EMBL BI798996 [CCGCTTGGGTACGCGGCGGGAG CGGAGGCGATCATGCTGCTGCTGCTGACGCTACTGGATCCTCTTCTCCGTCACCTCCCTCGTCGT CAGGCTCGACCAGCTC CAGCAGCGC GTC GACAAGCTC AAGAAG CGGGACGACTGATCTGATCCTGCTACCCCT CCCTGATTCAGCGCGTCGACTGACCTGACCGGTGGCTTCGCTGTTTCTTCCCTACTCGTTTGTGTTCTTAGATATATCATGTGATGCGTGTTGCTGTGTTTTTTTGTAGTATGGATATGGATGCTTGAGATCGTGATGCGGA TTTGAGCGTTCTATTATTTGCTTCAGATCTAGTTTGAGTAAAAA ] [+] EMBL BI799496 [CCGCTTGGGTACGCGGCGGGAGCCGGAGGCGATCATGCTGCTGCTGCTGACGCTACTGGATCCTCTTCTCCGTCACCTCCCTCGTCGT CAGGCTCGACCAGCTC CAGCAGCGC GTC GACAAGCTC AAGAAG CGGGACGACTGATCTGATCCTGCTACCCCT CCCTGATTCAGCGCGTCGACTGACCTGACCGGTGGCTTCGCTGTTTCTTCCCTACTCGTTTGTGTTCTTAGATATATCATGTGATGCGT TT CTGTGTTTTTTTGTA TATGGATATGGATGCTTGAGATCGTGATCCGGA TTTGAGCGTTCTATTATTGGCTCCAGATCTAGTTTGAGTAAAAA ] [+] EMBL BI798284 [ atcgccGCCGC GCTGCT CCTCTACTGGATCCTCTTCTCCGTCACCTCCCTCGTCGTCCAGGCTCGACCAGCTC CAGCAGCGC GTC GACAAGCTC AAGAAGCCGGGACGACTGATCTGATCCTGCTACCCCT CCCTGATTCAGCGCGTCGACTGACCTGACCGGTGGCTTCGCTGTTTCTTCCCTACTCGTTTGTGTTCTTAGATATATCATGTGATGCGTGTTGCTGTGTTTTTTTGTAGTATGGATATGGATGCTTGAGATCGTGATGCGGACTTTGAGCGTTCTATTATTTGCTTCAGATCTAGTTTGAGTAAATTCTGGTCTTTTATGCCCCGAAGGACATGATACATCATTTCTCCCAAAAAAAAAAAAGTTGCAAATGTGAGACTCTAGGTTATTTTTGGATTAGTGGGCATAATAGTTTTTACCTGTTTTATCCCGAAAAA] [+] EMBL BI796080 [ GCTCACAGCAGCGCTGTCAGACAAGCTCAAAGAAG CGGGACG CTGATCTGATCCTGCTACCCCTCCCCTGATTCAGCGCGTCGACTGACCTGACCGGTGGCTTC CTGTTTCTTCCCTACTCGTTTGTGTTCTTAGATATATCATGTGATGCGTGTT CTGTGTTTTTTTGTAGTATGGATATGGATGCTTGAGATCGTGATGCGGA TTTGAGCGTTCTATTAaaa ] consensusID : consensus_13090#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 56 fasta sequence [AGTAAATTCTGGTCTTTTATGCTACGAAGGACATGATACATCAATTTNTCCAAAAA] [+] EMBL AU031313 [AGTAAATTCTGGTCTTTTATGCTACGAAGGACATGATACATCAATTTNTCCAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13090#2 ------------------------------------------------------------ consensus_13090#3 ------------------------------------------------------------ consensus_13090#0 ATCCCTCGCCTCCTCTTCCTCCTCCCCGAGCTCGAGTCCGAGAGCCTCCGATTCGGCAGC 60 consensus_13090#1 --CCCTCGCCTCCTCTTCCTCCTCCCCGAGCTCGAGTCCGAGAGCCTCCGATTCGGCAGC 58 consensus_13090#2 -------------------CCGCTTGGGTACGCGGCGGGAGCGGAGGCGATCATGCTGCT 41 consensus_13090#3 ------------------------------------------------------------ consensus_13090#0 GATGGCGCTGGAGTGGGTGGTGCTTGGGTACGCGGCGGGAGCGGAGGCGATCATGCTGCT 120 consensus_13090#1 GATGGCGCTGGAGTGGGTGGTGCTTGGGTACGCGGCGGGAGCGGAGGCGATCATGCTGCT 118 consensus_13090#2 GCTGCTGACGCTACTGGATC--------CTCTTCTCCGTCACCTCCCTCGTCGTCAGGCT 93 consensus_13090#3 ------------------------------------------------------------ consensus_13090#0 GCTGCTGACGCTGCCGGGGCTGGACGGGCTCCGGCGGGGGATGATCTCCGTGGTGCGGAG 180 consensus_13090#1 GCTGCTGACGCTGCCGGGGCTGGACGGGCTCCGGCGGGGGATGATCTCCGTGGTGCGGAG 178 consensus_13090#2 CG-ACCAGCTCCAGCAGCGCGTCGACAAGCTCAAGAAGCGGGACGACTGATCTGATCCTG 152 consensus_13090#3 ------------------------------------------------------------ consensus_13090#0 CGCGCTGAAGCCGATGATGTCGGTGGTGCCCTTCTGCCTCTTCCTGCTGATGGACATCTA 240 consensus_13090#1 CGCGCTGAAGCCGATGATGTCGGTGGTGCCCTTCTGCCTCTTCCTGCTGATGGACATCTA 238 consensus_13090#2 CTACCCCTCCCTGATTCAGCGCGTCGACTGACCTGACCGGTGGCTTCGCTGTTTCTTCCC 212 consensus_13090#3 ------------------------------------------------------------ consensus_13090#0 CTGGAAGTACGAGACGCGGCCCACCTGCGACGACGAGCACCACTGCACCCCGTCCGAGCA 300 consensus_13090#1 CTGGAAGTACGAGACGCGGCCCACCTGCGACGACGAGCACCACTGCACCCCGTCCGAGCA 298 consensus_13090#2 TACTCGTTTGTGTTCTTAGATATATCATGTGATGCGTGTTGCTGTGTTTTTTTGTAGTAT 272 consensus_13090#3 ------------------------------------------------------------ consensus_13090#0 CCTCCGCCACCAGAAGTCCATCATGAAGTCGCAGCGCAACGCGCTCCTCATCGCCGCCGC 360 consensus_13090#1 CCTCCGCCACCAGAAGTCCATCATGAAGTCGCAGCGCAACGCGCTCCTCATCGCCGCCGC 358 consensus_13090#2 GGATATGGATGCTTGAGATCGTGATGCGGATTTGAGCGTTCTATTATTTGCTTCAGATCT 332 consensus_13090#3 ------------------------------------------------------------ consensus_13090#0 GCTG-CTCCTCTACTGGATCCTCTTCTCCATCACCTCCCTCGTCGTCAGGCTCGACCAGC 419 consensus_13090#1 GCTGGCTCCTCTACTGGATCCTCTTCTCGATCACCTCCTTCGGCGTCAGGTTCGACCAGC 418 consensus_13090#2 AGTTTGAGTAAAAA--CTGGTCTTTTATGCC--CCGAAGGACATGATACAT-CATTTCTC 387 consensus_13090#3 ------AGTAAATT--CTGGTCTTTTATGCT--ACGAAGGACATGATACAT-CAATTTNT 49 consensus_13090#0 TCCAGCAGCGCGTCGACAAGCTCAAGAAGCGGGACGACTGATCTGATCC-TGCTACCCCT 478 consensus_13090#1 TCCCGCAGCGCGTCGACGAGTTCAGGAAGCGGGAAGACGGATCTGATCCCTGCTACCCCT 478 ** * * * ** ** ** **** * * * consensus_13090#2 CCAAAAAAAAAAAAGTTGCAAATGTGAGACTCTAGGTTATTTTTGGATTAGTGGGCATAA 447 consensus_13090#3 CCAAAAA----------------------------------------------------- 56 consensus_13090#0 CCCTGATTCAGCGCGTCGACTG-ACCTGACCGGTGGCTTCGCTGTTTCTTCCCTACTCGT 537 consensus_13090#1 CCCTGATTCAGGGGGTCGAAAGGACCTGACCGGGGGCTTCCGTGGGTTTTTCCTACCCGT 538 ** * consensus_13090#2 TAGTTTTTACCTGTTTTATCCCGAAAAA-------------------------------- 475 consensus_13090#3 ------------------------------------------------------------ consensus_13090#0 TTGTGTTCTTAGATATATCATGTGATGCGTGTTGCTGTGTTTTTTT-GTAGTATGGATAT 596 consensus_13090#1 TGGGGGTCTTACAT-TTTAAGGGGAGGCCGGTTGCTGGGTTTTTTTCGCAACA-GGCTAT 596 consensus_13090#2 ------------------------------------------------------------ consensus_13090#3 ------------------------------------------------------------ consensus_13090#0 GGATGCTTGAGATCGTGATGCGGATTTGAGCGTTCTATTATTTGCTTCAGATCTAGTTTG 656 consensus_13090#1 GGAGGCCTGAGAAT---------------------------------------------- 610 consensus_13090#2 ----------------------------------- consensus_13090#3 ----------------------------------- consensus_13090#0 AGTAAATTCTGGTCTTTTATGCTAAAAAAAAAAAA 691 consensus_13090#1 ----------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||