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Oryza sativa
cluster # 13134 cluster # 13134       Sequences # 12       consensus # 6


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13134#0 length = 852 sequences # 4  
consensus_13134#1 length = 833 sequences # 4  
consensus_13134#2 length = 488 sequences # 1  
consensus_13134#3 length = 484 sequences # 1  
consensus_13134#4 length = 262 sequences # 1  
consensus_13134#5 length = 239 sequences # 1  

consensusID : consensus_13134#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 852
fasta sequence
                              [GCGCGCTATCCCTCTCCCCCCTTCCCCTCTCACACCGCGAGCTCGCGTAGGACACGAACGAGATGAGGCCAGCGTCGTCCCCCGTGCCGGCCGTCCTCACGGCCCCGGCTACCGCTGCCACTGCCGCCATCGCCGTAAAGCCAACGCCGCCTCAACGCGCGCTTCAAGCCAGCAGGCGCGAGTTGGTGGTGGCGGCGGCGGCGGTGGCGCTGTGGCCGTGCGGGGGAGCGGCGCGGGCGGCGTCGGACGACGAGTACGTGAGCGAGACGAAGGACGTGATCGGGAAGGTGCGGTCGACGATCAACATGGACAGGGCGGACCCCGGGGTGGCGGACGCGGTGGCGGAGCTCCGCGAGCTGTCCAACTCGTGGGTGGCCAAGTACCGCAGGGAGAAGTCGCTGCTGGGCCGCCCGTCCTTCAGGGAGATGTACTCCGCGCTCAACGCCGTGTCGGGCCACTACATCAGCTTCGGCCCCACGGCCCCCATCCCCAACAAGCGCCGCGCCCGCATCCTCGAGGAGATGGACACCGCCGAGAAGGCCCTGCTCCGCGGCCGGTGAGGTGAGTGATGATTGATTGAGCCGAGTGC-TTACGGCCACCGATCTTTCTCGTGTGAGACGCACGCACGCGCGTGCGTACGCGGCACATTCACTTTTTGTAACTACTATACTACCGTCGCGTCGCGATGGGGCCGGGCGTCGGCTTTGCTCTTGTCGAGTGGAATCGAATCGGTGGAGGCTTTGAAATTATTACTACTGAGTTGTATGTGTATTTTTTTTTTCTGTATGATTTTTGGTTCAGCTGACATGGTGAGGATTACACGGTTGGCTTGGGGACATGCAACCTCCCTAG]

[+] EMBL CA758944             [GCGCGCTATCCCTCTCCCCCCTTCCCCTCTCACACCGCGAGCTCGCGTAGGACACGAACGAGATGAGGCCAGCGTCGTCCCCCGTGCCGGCCGTCCTCACGGCCCCGGCTACCGCTGCCACTGCCGCCATCGCCGTAAAGCCAACGCCGCCTCAACGCGCGCTTCAAGCCAGCAGGCGCGAGTTGGTGGTGGCGGCGGCGGCGGTGGCGCTGTGGCCGTGCGGGGGAGCGGCGCGGGCGGCGTCGGACGACGAGTACGTGAGCGAGACGAAGGACGTGATCGGGAAGGTGCGGTCGACGATCAACATGGACAGGGCGGACCCCGGGGTGGCGGACGCGGTGGCGGAGCTCCGCGAGCTGTCCAACTCGTGGGTGGCCAAGTACCGCAGGGAGAAGTCGCTGCTGGGCCGCCCGTCCTTCAGGGAGATGTACTCCGCGCTCAACGCCGTGTCGGGCCACTACATCAGCTTCGGCCCCACGGCCCCCATCCCCAACAAGCGCCGCGCCCGCATCCTCGAGGAGATGGACACCGCCGAGAAGGGCCTGCTCCGCGGCCGGTGAGGTGAGTGATGATTGATTGAGCCGAGTGCTTTAC GCCACCGATCTTTCTCG                                                                                                                                                                                                                                                 ]
[+] EMBL AK120545             [   CGCTATCCCTCTCCCCCCTTCCCCTCTCACACCGCGAGCTCGCGTAGGACACGAACGAGATGAGGCCAGCGTCGTCCCCCGTGCCGGCCGTCCTCACGGCCCCGGCTACCGCTGCCACTGCCGACATCGCCGTAAAGCCAACGCCGCCTCAACGCGCGCTTCAAGCCAGCAGGCGCGAGTTGGTGGTGGCGGCGGCGGCGGTGGCGCTGTGGCCGTGCGGGGGAGCGGCGCGGGCGGCGTCGGACGACGAGTACGTGAGCGAGACGAAGGACGTGATCGGGAAGGTGCGGTCGACGATCAACATGGACAGGGCGGACCCCGGGGTGGCGGACGCGGTGGCGGAGCTCCGCGAGCTGTCCAACTCGTGGGTGGCCAAGTACCGCAGGGAGAAGTCGCTGCTGGGCCGCCCGTCCTTCAGGGAGATGTACTCCGCGCTCAACGCCGTGTCGGGCCACTACATCAGCTTCGGCCCCACGGCCCCCATCCCCAACAAGCGCCGCGCCCGCATCCTCGAGGAGATGGACACCGCCGAGAAGGCCCTGCTCCGCGGCCGGTGAGGTGAGTGATGATTGATTGAGCCGAGTGC TTACGGCCACCGATCTTTCTCGTGTGAGACGCACGCACGCGCGTGCGTACGCGGCACATTCACTTTTTGTAACTACTATACTACCGTCGCGTCGCGATGGGGCCGGGCGTCGGCTTTGCTCTTGTCGAGTGGAATCGAATCGGTGGAGGCTTTGAAATTATTACTACTGAGTTGTATGTGTATTTTTTTTTTCTGTATGATTTTTGGTTCAGCTGACATGGTGAGGATTACACGGTTGGCTTGGGGACATGCAACCTCCCTAG]
[+] EMBL CB649105             [                                        GCTCGCCTATGACACGAACGAGATGAGGCCAGCGTCGTCCCCCGTGCCGGCCGTCCTCACGGCCCCGGCTACCGCTGCCACTGCCGCCATCGCCGTAAAGCCAACGCCGCCTCAACGCGCGCTTCAAGCCAGCAGGCGCGAGTTGGTGGTGGCGGCGGCGGCGGTGGCGCTGTGGCCGTGCGGGGGAGCGGCGCGGGCGGCGTCGGACGACGAGTACGTGAGCGAGACGAAGGACGTGATCGGGAAGGTGCGGTCGACGATCAACATGGACAGGGCGGACCCCGGGGTGGCGGACGCGGTGGCGGAGCTCCGCGAGCTGTCCAACTCGTGGGTGGCCAAGTACCGCAGGGAGAAGTCGCTGCTGGGCCGCCCGTCCTTCAGGGAGATGTACTCCGCGCTCAACGCCGTGTCGGGCCACTACATCAGCTTCGGCCCCACGGCCCCCATCCCCAACAAGCGCCGCGCCCGCATCCTCGAGGAGATGGACACCGCCGAGAAGGCCCTGCTCCGCGGCCGGTGAGGTGAGTGATGATTGATTGAGCCGAGTGC TTACGGCCACCGATCTTTCTCGTGTGAGACGCACGCACGCGCGTGCGTACGCGGCACATTCACTTTTTGTAACTACTATACTACCGTCGCGTCGCGATGGGGCCGGGCGTCGGCTTTGCTCTTGTCGAGTGGAATCGAATCGGTGGAGGCTTTGAAATTATTACTACTGAGTTGTATGTGTATTTTT                                                                            ]
[-] EMBL CB649106             [                                                                                                                                                                                                                                                                                                                                                                                gGGGTGGCCAAGTGCCGCAGGGAGAAGTCGCTGCTGGGCCGCCCGTCCTTCAGGGAGACGTCCTCCGCGCTCAACGCCGTGTCGGGCCACTACATCAGTTTGGGCCCCACGGCCCCCATCCCCAACAAGCGCCGCGCCCGCATCCTCGAGGAGATGGACACCGCCGAGAAGGCCCTGCTCCGCGGCCGGTGAGGTGAGTGATGATTGATTGAGCCGAGTGC TTACGGCCCCCGATCTTTCTCGTGTGAGACGCACGCACGCGCGTGCGTACGCGGCACATTCACTTTTTGTAACTACTATACTACCGTCGCGTCGCGATGGGGCCGGGCGTCGGCTTTGCTCTTGTCGAGTGGAATCGAATCGGTGGAGG                                                                                                                  ]


>consensus_13134#0 GCGCGCTATCCCTCTCCCCCCTTCCCCTCTCACACCGCGAGCTCGCGTAGGACACGAACG AGATGAGGCCAGCGTCGTCCCCCGTGCCGGCCGTCCTCACGGCCCCGGCTACCGCTGCCA CTGCCGCCATCGCCGTAAAGCCAACGCCGCCTCAACGCGCGCTTCAAGCCAGCAGGCGCG AGTTGGTGGTGGCGGCGGCGGCGGTGGCGCTGTGGCCGTGCGGGGGAGCGGCGCGGGCGG CGTCGGACGACGAGTACGTGAGCGAGACGAAGGACGTGATCGGGAAGGTGCGGTCGACGA TCAACATGGACAGGGCGGACCCCGGGGTGGCGGACGCGGTGGCGGAGCTCCGCGAGCTGT CCAACTCGTGGGTGGCCAAGTACCGCAGGGAGAAGTCGCTGCTGGGCCGCCCGTCCTTCA GGGAGATGTACTCCGCGCTCAACGCCGTGTCGGGCCACTACATCAGCTTCGGCCCCACGG CCCCCATCCCCAACAAGCGCCGCGCCCGCATCCTCGAGGAGATGGACACCGCCGAGAAGG CCCTGCTCCGCGGCCGGTGAGGTGAGTGATGATTGATTGAGCCGAGTGCTTACGGCCACC GATCTTTCTCGTGTGAGACGCACGCACGCGCGTGCGTACGCGGCACATTCACTTTTTGTA ACTACTATACTACCGTCGCGTCGCGATGGGGCCGGGCGTCGGCTTTGCTCTTGTCGAGTG GAATCGAATCGGTGGAGGCTTTGAAATTATTACTACTGAGTTGTATGTGTATTTTTTTTT TCTGTATGATTTTTGGTTCAGCTGACATGGTGAGGATTACACGGTTGGCTTGGGGACATG CAACCTCCCTAG



consensusID : consensus_13134#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 833
fasta sequence
                              [AGCTCGCGTAGGACACGAACGAGATGAGGCCAGCGTCGTCCCCCGTGCCGGCCGTCCTCACGGCCCCGGCTACCGCTGCCACTGCCGCCATCGCCGTAAAGCCAACGCCGCCTCAACGCGCGCTTCAAGCCAGCAGGCGCGAGTTGGTGGTGGCGGCGGGAGGGGTGGCGGCGGCGGCGGTGGCGCTGTGGCCGTGCGGGGGAGCGGCGCGGGCGGCGTCGGACGACGAGTACGTGAGCGAGACGAAGGACGTGATCGGGAAGGTGCGGTCGACGATCAACATGGACAGGGCGGACCCCGGGGTGGCGGACGCGGTGGCGGAGCTCCGCGAGCTGTCCAACTCGTGGGTGGCCAAGTACCGCAGGGAGAAGTCGCTG-CTGGGCCG-CCCGTCCTTCAGGGAGATGTACTCCGCGCTCAACGCCGTGTCGGGCCACTACATCAGCTTCGGCCCCACGGCCCCCATCCCCAACAAGCGCCGCGCCCGCATCCTCGAGGAGATGGACACCGCCGAGAAGGCCCTGCTCCGCGGCCGGTGAGGTGAGTGATGATTGATTGAGCCGAGTGCTTACGGCCACCGATTCTCCCTTTCTCGTGTGAGACGCACGCACGCGCGTGCGTACGCGGCACATTCACTTTTTGTAACTACTATACTACCGTCGCGTCGCGATGGGGCCGGGCGTCGGCTTTGCTCTTGTCGAGTGGAATCGAATCGGTGGAGGCTTTGAAATTATTACTACTGAGTTGTATGTGTATTTTTTTTTTCTGTATGATTTTTGGTTCAGCTGACATGGTGAGGATTACACGGTTGGCTTGGGGACATGCAACTCCCTAGA]

[+] EMBL CB624237             [AGCTCGCGTAGGACACGAACGAGATGAGGCCAGCGTCGTCCCCCGTGCCGGCCGTCCTCACGGCCCCGGCTACCGCTGCCACTGCCGCCATCGCCGTAAAGCCAACGCCGCCTCAACGCGCGCTTCAAGCCAGCAGGCGCGAGTTGGTGGTGGCGGCGGGAGGGGTGGCGGCGGCGGCGGTGGCGCTGTGGCCGTGCGGGGGAGCGGCGCGGGCGGCGTCGGACGACGAGTACGTGAGCGAGACGAAGGACGTGATCGGGAAGGTGCGGTCGACGATCAACATGGACAGGGCGGACCCCGGGGTGGCGGACGCGGTGGCGGAGCTCCGCGAGCTGTCCAACTCGTGGGTGGCCAAGTACCGCAGGGAGAAGTCGCTG CTGGGCCG CCCGTCCTTCAGGGAGATGTACTCCGCGCTCAACGCCGTGTCGGGCCACTACATCAGCTTCGGCCCCACGGCCCCCATCCCCAACAAGCGCCGCGCCCGCATCCTCGAGGAGATGGACACCGCCGAGAAGGCCCTGCTCCGCGGCCGGTGAGGTGAGTGATGATTGATTGAGCCGAGTGCTTACGGCCACCGATTCTCCCTTTCTCGTGTGAGACGCACGCACGCGCGTGCGTACGCGGCACATTCACTTTTTGTAACTACTATACTACCGTCGCGTCGCGATGGGGCCGGGCGTCGGCTTTGCTCTTGTCGAGTGGAATCGAATCGGTGGAGGCTTTGAAATTATTACTAC                                                                                                ]
[-] EMBL CB624238             [                                                      TCCTCACGGCCCCGGCTACCGCTGCCACTGCCGCCATCGCCGTAAAGCCAACGCCGCCTCAACGCGCGCTTCAAGCCAGCAGGCGCGAGTTGGTGGTGGCGGCGGGAGGGGTGGCGGCGGCGGCGGTGGCGCTGTGGCCGTGCGGGGGAGCGGCGCGGGCGGCGTCGGACGACGAGTACGTGAGCGAGACGAAGGACGTGATCGGGAAGGTGCGGTCGACGATCAACATGGACAGGGCGGACCCCGGGGTGGCGGACGCGGTGGCGGAGCTCCGCGAGCTGTCCAACTCGTGGGTGGCCAAGTACCGCAGGGAGAAGTCGCTG CTGGGCCG CCCGTCCTTCAGGGAGATGTACTCCGCGCTCAACGCCGTGTCGGGCCACTACATCAGCTTCGGCCCCACGGCCCCCATCCCCAACAAGCGCCGCGCCCGCATCCTCGAGGAGATGGACACCGCCGAGAAGGCCCTGCTCCGCGGCCGGTGAGGTGAGTGATGATTGATTGAGCCGAGTGCTTACGGCCACCGATTCTCCCTTTCTCGTGTGAGACGCACGCACGCGCGTGCGTACGCGGCACATTCACTTTTTGTAACTACTATACTACCGTCGCGTCGCGATGGGGCCGGGCGTCGGCTTTGCTCTTGTCGAGTGGAATCGAATCGGTGGAGGCTTTGAAATTATTACTACTGAGTTGTATGTGTATTTTTTTTTTCTGTATGATTTTTGGTTCAGCTGACATGGTGAGGATTACACGGTTGGCTTGGGGACATGCAACTCCCTAGA]
[+] EMBL BI809680             [                                                                                                                                                                                                             acgGCCGGCGGCTTCGGACGACGAGTACGTGAGCGAGACGAAGGACGTGATCGGGAAGGTGCGGTCGACGATCAACATGGACA GGCGGACCCCGGGGT GC GACGCGGTGGCGGAGCTCCGCGAGCTGTCCAACTCGTGGGT GCCAAGTACCGCAGGGAGAAGTCGCTGTCTGGCCAGCCCCGTCCTTCAGGGAGATGTACTCCGCGCTCAAC CCGT TCGGGCCACTACATCAGCTTCGGCCCCACGGCCCCCATCCCCAACAAGCGCCGCGCCCGCATCCTCGAGGAGATGGACACCGCCGAGAAGGCCCTGCTCC CGGCCGGTGAGGTGAGTGATGATTGATTGAGCCGAGTGCTTACGGCCACCGATTCTCCCTTTCTCGTGTGAGACGCACGCACGCGCGTGCGTACGCGGCACATTCACTTTTTGTAACTACTATACTACCGTCGCGTCGCGATGGGGCCGGGCGTCGGCTTTGCTCTTGTCGAGTGGAATCGAATCGGTGGAGGCTTTGAAATTAaaaaaaa                                                                                                ]
[+] EMBL CF196010             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CCCCACGGCCCCCATCCCCAACAAGCGCCGCGCCCGCATCCTCGAGGAGATGGACACCGCCGAGAAGGCCCTGCTCCGCGGCCGGTGAGGTGAGTGATGATTGATTGAGCCGAGTGCTTACGGCCACCGATTCTCCCTTTCTCGTGTGAGACGCACGCACGCGCGTGCGTACGCGGCACATTCACTTTTTGTAACTACTATACTACCGTCGCGTCGCGATGGGGCCGGGCGTCNNCTTTGCTCTTGTCGAGTGGAATCGAATCGGTGGAGGCTTTGAAATTATTACTACTGAGNTGTATGTGTANNTNNNTTTTCTGTATGATTTTTGGTncnnntg                                                ]


>consensus_13134#1 AGCTCGCGTAGGACACGAACGAGATGAGGCCAGCGTCGTCCCCCGTGCCGGCCGTCCTCA CGGCCCCGGCTACCGCTGCCACTGCCGCCATCGCCGTAAAGCCAACGCCGCCTCAACGCG CGCTTCAAGCCAGCAGGCGCGAGTTGGTGGTGGCGGCGGGAGGGGTGGCGGCGGCGGCGG TGGCGCTGTGGCCGTGCGGGGGAGCGGCGCGGGCGGCGTCGGACGACGAGTACGTGAGCG AGACGAAGGACGTGATCGGGAAGGTGCGGTCGACGATCAACATGGACAGGGCGGACCCCG GGGTGGCGGACGCGGTGGCGGAGCTCCGCGAGCTGTCCAACTCGTGGGTGGCCAAGTACC GCAGGGAGAAGTCGCTGCTGGGCCGCCCGTCCTTCAGGGAGATGTACTCCGCGCTCAACG CCGTGTCGGGCCACTACATCAGCTTCGGCCCCACGGCCCCCATCCCCAACAAGCGCCGCG CCCGCATCCTCGAGGAGATGGACACCGCCGAGAAGGCCCTGCTCCGCGGCCGGTGAGGTG AGTGATGATTGATTGAGCCGAGTGCTTACGGCCACCGATTCTCCCTTTCTCGTGTGAGAC GCACGCACGCGCGTGCGTACGCGGCACATTCACTTTTTGTAACTACTATACTACCGTCGC GTCGCGATGGGGCCGGGCGTCGGCTTTGCTCTTGTCGAGTGGAATCGAATCGGTGGAGGC TTTGAAATTATTACTACTGAGTTGTATGTGTATTTTTTTTTTCTGTATGATTTTTGGTTC AGCTGACATGGTGAGGATTACACGGTTGGCTTGGGGACATGCAACTCCCTAGA



consensusID : consensus_13134#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 488
fasta sequence
                              [GCCGAATTCGGCACGAGCGCGAGCTCGCGTAGGACACGAACGAGATGAGGCCAGCGTCGTCCCCCGTGCCGGCCGTCCTCACGGCCCCGGCTACCGCTGCCACTGCCGCCATCGCCGTAAAGCCAACGCCGCCTCAACGCGCGCTTCAAGCCANCAGGCGCGAATTGGTGGTGGCGGCGGCGGCGGTGGCGCTGTGGCCGTGCGGGGGAACGGCGCGGGCGGCGTCCGACGACAANTACGTNAGCGAGACNAAAGACGTNATCGGGAAGGTGCGGTCNACAATCAACATGGACAGGGCGGACCCCNGGGTGGCGGACGCCGTGGCGGANCTCCGCGANCTGTCCAACTCGTGGGTGGCCAAGTNCCGCAGGGAGAATCGCTGCTGGGCCGCCCGTCCTTCAGGGAGATGTNCTCCGCGCTCAACGCCGTGTCGGGCCATACATCAGCTTCGGCCCCACGGCCCCCATCCCCAACAAGCGCCGCGCCCG]

[+] EMBL BE229707             [GCCGAATTCGGCACGAGCGCGAGCTCGCGTAGGACACGAACGAGATGAGGCCAGCGTCGTCCCCCGTGCCGGCCGTCCTCACGGCCCCGGCTACCGCTGCCACTGCCGCCATCGCCGTAAAGCCAACGCCGCCTCAACGCGCGCTTCAAGCCANCAGGCGCGAATTGGTGGTGGCGGCGGCGGCGGTGGCGCTGTGGCCGTGCGGGGGAACGGCGCGGGCGGCGTCCGACGACAANTACGTNAGCGAGACNAAAGACGTNATCGGGAAGGTGCGGTCNACAATCAACATGGACAGGGCGGACCCCNGGGTGGCGGACGCCGTGGCGGANCTCCGCGANCTGTCCAACTCGTGGGTGGCCAAGTNCCGCAGGGAGAATCGCTGCTGGGCCGCCCGTCCTTCAGGGAGATGTNCTCCGCGCTCAACGCCGTGTCGGGCCATACATCAGCTTCGGCCCCACGGCCCCCATCCCCAACAAGCGCCGCGCCCG]


>consensus_13134#2 GCCGAATTCGGCACGAGCGCGAGCTCGCGTAGGACACGAACGAGATGAGGCCAGCGTCGT CCCCCGTGCCGGCCGTCCTCACGGCCCCGGCTACCGCTGCCACTGCCGCCATCGCCGTAA AGCCAACGCCGCCTCAACGCGCGCTTCAAGCCANCAGGCGCGAATTGGTGGTGGCGGCGG CGGCGGTGGCGCTGTGGCCGTGCGGGGGAACGGCGCGGGCGGCGTCCGACGACAANTACG TNAGCGAGACNAAAGACGTNATCGGGAAGGTGCGGTCNACAATCAACATGGACAGGGCGG ACCCCNGGGTGGCGGACGCCGTGGCGGANCTCCGCGANCTGTCCAACTCGTGGGTGGCCA AGTNCCGCAGGGAGAATCGCTGCTGGGCCGCCCGTCCTTCAGGGAGATGTNCTCCGCGCT CAACGCCGTGTCGGGCCATACATCAGCTTCGGCCCCACGGCCCCCATCCCCAACAAGCGC CGCGCCCG



consensusID : consensus_13134#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 484
fasta sequence
                              [TGCCGCTCACACCGCGAGCTCGCGTTAGGACACGAACGAGATGANGCCAGCGTCGTCCCCCGTGCCGGCCGTCCTCACGGCCCCGGCTACCGCTGCCACTGCCGCCATCGCCGTAAAGCCAACGCCGCCTCAACGCGCGCTTCAAGCCAGCANGCGCCAATTGGTGGTGGCCGCGGGAAGGGTNGCCGCCGCCGCNGTGGCCTGTGGCCGTGCGGGGGAACGGCGCGGGCGGCGTCCGACGACNANTNCGTNAGCGANACNAAAGACGTNATCGGGAAAGTGCGGTCNACNATCAACATGGACAGGGCGGACCCCGGGGTGGCGGACGCNGTGGCGGAACTCCNCNANCTGTCCAACTCCTGGGTGGCCNAGTNCCGCANGGANAATCCTGCTGGGCCGCCCGTCCTTCAAGGANATGTNCTCCGCGCTCAACGCCGTGTCNGGCCACTACATCANCTTCNGCCCACGGGCCCCATCCCCAACA]

[+] EMBL AA753002             [TGCCGCTCACACCGCGAGCTCGCGTTAGGACACGAACGAGATGANGCCAGCGTCGTCCCCCGTGCCGGCCGTCCTCACGGCCCCGGCTACCGCTGCCACTGCCGCCATCGCCGTAAAGCCAACGCCGCCTCAACGCGCGCTTCAAGCCAGCANGCGCCAATTGGTGGTGGCCGCGGGAAGGGTNGCCGCCGCCGCNGTGGCCTGTGGCCGTGCGGGGGAACGGCGCGGGCGGCGTCCGACGACNANTNCGTNAGCGANACNAAAGACGTNATCGGGAAAGTGCGGTCNACNATCAACATGGACAGGGCGGACCCCGGGGTGGCGGACGCNGTGGCGGAACTCCNCNANCTGTCCAACTCCTGGGTGGCCNAGTNCCGCANGGANAATCCTGCTGGGCCGCCCGTCCTTCAAGGANATGTNCTCCGCGCTCAACGCCGTGTCNGGCCACTACATCANCTTCNGCCCACGGGCCCCATCCCCAACA]


>consensus_13134#3 TGCCGCTCACACCGCGAGCTCGCGTTAGGACACGAACGAGATGANGCCAGCGTCGTCCCC CGTGCCGGCCGTCCTCACGGCCCCGGCTACCGCTGCCACTGCCGCCATCGCCGTAAAGCC AACGCCGCCTCAACGCGCGCTTCAAGCCAGCANGCGCCAATTGGTGGTGGCCGCGGGAAG GGTNGCCGCCGCCGCNGTGGCCTGTGGCCGTGCGGGGGAACGGCGCGGGCGGCGTCCGAC GACNANTNCGTNAGCGANACNAAAGACGTNATCGGGAAAGTGCGGTCNACNATCAACATG GACAGGGCGGACCCCGGGGTGGCGGACGCNGTGGCGGAACTCCNCNANCTGTCCAACTCC TGGGTGGCCNAGTNCCGCANGGANAATCCTGCTGGGCCGCCCGTCCTTCAAGGANATGTN CTCCGCGCTCAACGCCGTGTCNGGCCACTACATCANCTTCNGCCCACGGGCCCCATCCCC AACA



consensusID : consensus_13134#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 262
fasta sequence
                              [CGCCGAGAAGGCCCTGCTCCGCGGCCGGTGAGGTGAGTGATGATTGATTGAGCCGAGTGCTTACGGCCACCGATTCTCCCTTTNTCGTGTGAGACGCACGCACGCGCGTGCGTACGCGGCACATTCACTTTTTGTAACTACTATACTACCGTCGCGTCGCGATGGGGCCGGGCGTCGGCTTTGCTCTTGTCGAGTGGAATCGAATCGGTGGAGGCTTTGAAATTATTANTACTGNAAAGGNNAAAAAAAAAAAAATTCTCGA]

[-] EMBL AA754468             [CGCCGAGAAGGCCCTGCTCCGCGGCCGGTGAGGTGAGTGATGATTGATTGAGCCGAGTGCTTACGGCCACCGATTCTCCCTTTNTCGTGTGAGACGCACGCACGCGCGTGCGTACGCGGCACATTCACTTTTTGTAACTACTATACTACCGTCGCGTCGCGATGGGGCCGGGCGTCGGCTTTGCTCTTGTCGAGTGGAATCGAATCGGTGGAGGCTTTGAAATTATTANTACTGNAAAGGNNAAAAAAAAAAAAATTCTCGA]


>consensus_13134#4 CGCCGAGAAGGCCCTGCTCCGCGGCCGGTGAGGTGAGTGATGATTGATTGAGCCGAGTGC TTACGGCCACCGATTCTCCCTTTNTCGTGTGAGACGCACGCACGCGCGTGCGTACGCGGC ACATTCACTTTTTGTAACTACTATACTACCGTCGCGTCGCGATGGGGCCGGGCGTCGGCT TTGCTCTTGTCGAGTGGAATCGAATCGGTGGAGGCTTTGAAATTATTANTACTGNAAAGG NNAAAAAAAAAAAAATTCTCGA



consensusID : consensus_13134#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 239
fasta sequence
                              [CCGCCGAGAAGGCCTGCTCCGCGGCCGGTGAGGTGAGTGATGATTGATTGAGCCGAGTGCTTACGGCCACCGATCTTTTCGTGTGAGACGCACGCACGCGCGTGCGTACGCGGCACATTCACTTTTTGTAAGTAGTATACTACCGTCGCGTCGCGATGGGGCCGGGCGTCGGCTTTGCTCTTGTCGAGTGGAATCGAATCGGTGGAGGCTTTGAAATTAAAAAAAAAAAAAAAAAACTC]

[-] EMBL AA754042             [CCGCCGAGAAGGCCTGCTCCGCGGCCGGTGAGGTGAGTGATGATTGATTGAGCCGAGTGCTTACGGCCACCGATCTTTTCGTGTGAGACGCACGCACGCGCGTGCGTACGCGGCACATTCACTTTTTGTAAGTAGTATACTACCGTCGCGTCGCGATGGGGCCGGGCGTCGGCTTTGCTCTTGTCGAGTGGAATCGAATCGGTGGAGGCTTTGAAATTAAAAAAAAAAAAAAAAAACTC]


>consensus_13134#5 CCGCCGAGAAGGCCTGCTCCGCGGCCGGTGAGGTGAGTGATGATTGATTGAGCCGAGTGC TTACGGCCACCGATCTTTTCGTGTGAGACGCACGCACGCGCGTGCGTACGCGGCACATTC ACTTTTTGTAAGTAGTATACTACCGTCGCGTCGCGATGGGGCCGGGCGTCGGCTTTGCTC TTGTCGAGTGGAATCGAATCGGTGGAGGCTTTGAAATTAAAAAAAAAAAAAAAAAACTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13134#4      ------------------------------------------------------------
consensus_13134#5      ------------------------------------------------------------
consensus_13134#1      AGCTCGCGTAGGACACGAACGAGATGAGGCCAGCGTCGTCCCCCGTGCCGGCCGTCCTCA 60
consensus_13134#2      ------------------------------------------------------------
consensus_13134#3      ------------------------------------------------------------
consensus_13134#0      ------------------------------------------------------------
                                                                                   

consensus_13134#4      ------------------------------------------------------------
consensus_13134#5      ------------------------------------------------------------
consensus_13134#1      CGGCCCCGGCTACCGCTGCCACTGCCGCCATCGCCGTAAAGCCAACGCCGCCTCAACGCG 120
consensus_13134#2      ------------------------------------------------------------
consensus_13134#3      ------------------------------------------------------------
consensus_13134#0      ------------------------------------------------------------
                                                                                   

consensus_13134#4      ------------------------------------------------------------
consensus_13134#5      ------------------------------------------------------------
consensus_13134#1      CGCTTCAAGCCAGCAGGCGCGAGTTGGTGGTGGCGGCGGGAGGGGTGGCGGCGGCGGCGG 180
consensus_13134#2      ------------------------------------------------------------
consensus_13134#3      ------------------------------------------------------------
consensus_13134#0      ------------------------------------------------------------
                                                                                   

consensus_13134#4      ------------------------------------------------------------
consensus_13134#5      ------------------------------------------------------------
consensus_13134#1      TGGCGCTGTGGCCGTGCGGGGGAGCGGCGCGGGCGGCGTCGGACGACGAGTACGTGAGCG 240
consensus_13134#2      ------------------------------------------------------------
consensus_13134#3      ------------------------------------------------------------
consensus_13134#0      ------------------------------------------------------------
                                                                                   

consensus_13134#4      ------------------------------------------------------------
consensus_13134#5      ------------------------------------------------------------
consensus_13134#1      AGACGAAGGACGTGATCGGGAAGGTGCGGTCGACGATCAACATGGACAGGGCGGACCCCG 300
consensus_13134#2      -----------------------------------------GCCGAATTCGGCACG-AGC 18
consensus_13134#3      -----------------------------------------------TGCCGCTCACACC 13
consensus_13134#0      ------------------------GCGCGCTATCCCTCTCCCCCCTTCCCCTCTCACACC 36
                                                                                   

consensus_13134#4      ------------------------------------------------------------
consensus_13134#5      ------------------------------------------------------------
consensus_13134#1      GGGTGGCGGACGCGGTGGCGGAGCTCCGCGAGCTGTCCAACTCGTGGGTGGCCAAGTACC 360
consensus_13134#2      GCGAGCTCGCGT-AGGACACGAACGAGATGAGGCCAGCGTCGTCCCCCGTGCCGGCCGTC 77
consensus_13134#3      GCGAGCTCGCGTTAGGACACGAACGAGATGANGCCAGCGTCGTCCCCCGTGCCGGCCGTC 73
consensus_13134#0      GCGAGCTCGCGT-AGGACACGAACGAGATGAGGCCAGCGTCGTCCCCCGTGCCGGCCGTC 95
                                                                                   

consensus_13134#4      ------------------------------------------------------------
consensus_13134#5      ------------------------------------------------------------
consensus_13134#1      GCAGGGAGAAGTCGCTGCTGGGCCGCCCGTCCTTCAGGGAGATGTACTCCGCGCTCAACG 420
consensus_13134#2      CTCACGGCCCCGGCTACCGCTGCCACTGCCGCCATCGCCGTAAAGCCAACGCCGCCTCAA 137
consensus_13134#3      CTCACGGCCCCGGCTACCGCTGCCACTGCCGCCATCGCCGTAAAGCCAACGCCGCCTCAA 133
consensus_13134#0      CTCACGGCCCCGGCTACCGCTGCCACTGCCGCCATCGCCGTAAAGCCAACGCCGCCTCAA 155
                                                                                   

consensus_13134#4      ------------------------------------------------------------
consensus_13134#5      ------------------------------------------------------------
consensus_13134#1      CCGTGTCGGGCCACTACATCAGCTTCGGCCCCACGGCCCCCATCCCCAACAAGCGCCGCG 480
consensus_13134#2      CGCGCGCTTCAAGCCANCAGGCGCGAATTGGTGGTGGCGGCGGCGGCGGTGGCG------ 191
consensus_13134#3      CGCGCGCTTCAAGCCAGCANGCGCCAATTGGTGGTGGCCGCGGGAAGGGTNGCCGCCGCC 193
consensus_13134#0      CGCGCGCTTCAAGCCAGCAGGCGCGAGTTGGTGGTGGCGGCGGCGGCGGTGGCG------ 209
                                                                                   

consensus_13134#4      -------------------------CGCCGAGAAGGCCCTGCTCCGCGGCCGGTGAGGTG 35
consensus_13134#5      ------------------------CCGCCGAGAAGGCC-TGCTCCGCGGCCGGTGAGGTG 35
consensus_13134#1      CCCGCATCCTCGAGGAGATGGACACCGCCGAGAAGGCCCTGCTCCGCGGCCGGTGAGGTG 540
consensus_13134#2      --------CTGTGGCCGTGCGGGGGAACGGCGCGGGCGGCGTCCGACGACAANTACGTNA 243
consensus_13134#3      GCNGTGGCCTGTGGCCGTGCGGGGGAACGGCGCGGGCGGCGTCCGACGACNANTNCGTNA 253
consensus_13134#0      --------CTGTGGCCGTGCGGGGGAGCGGCGCGGGCGGCGTCGGACGACGAGTACGTGA 261
                                                  * * *  ***   *     ** *   *  *   

consensus_13134#4      A-GTGATGATTGATTGAGCCGAGTGCTTACGGCCACCGATTCTCC---------CTTTNT 85
consensus_13134#5      A-GTGATGATTGATTGAGCCGAGTGCTTACGGCCACCGATC---------------TTTT 79
consensus_13134#1      A-GTGATGATTGATTGAGCCGAGTGCTTACGGCCACCGATTCTCC---------CTTTCT 590
consensus_13134#2      GCGAGACNAAAGACGTNATCGGGAAGGTGCGGTCNACAATCAACATGGACAGGGCGGACC 303
consensus_13134#3      GCGANACNAAAGACGTNATCGGGAAAGTGCGGTCNACNATCAACATGGACAGGGCGGACC 313
consensus_13134#0      GCGAGACGAAGGACGTGATCGGGAAGGTGCGGTCGACGATCAACATGGACAGGGCGGACC 321
                         *  *  *  **      ** *    * *** *  * **                    

consensus_13134#4      CGTGTGAGACGCACGCACGCGCGTGCGTACGCGGCACATTCACTTTTTGTAACTACTATA 145
consensus_13134#5      CGTGTGAGACGCACGCACGCGCGTGCGTACGCGGCACATTCACTTTTTGTAAGTAGTATA 139
consensus_13134#1      CGTGTGAGACGCACGCACGCGCGTGCGTACGCGGCACATTCACTTTTTGTAACTACTATA 650
consensus_13134#2      CCNGGGTGGCGGACGCCGTGGCGGANCTCCGCGANCTGTCCAACTCGTG--GGTGGCCAA 361
consensus_13134#3      CCGGGGTGGCGGACGCNGTGGCGGAACTCCNCNANCTGTCCAACTCCTG--GGTGGCCNA 371
consensus_13134#0      CCGGGGTGGCGGACGCGGTGGCGGAGCTCCGCGAGCTGTCCAACTCGTG--GGTGGCCAA 379
                       *  * * * ** ****    ***    * * *      * **  *  **    *     *

consensus_13134#4      CTACCGTCGCG-----TCGCGATGGGGCCGGGCGTCGGCTTTGCTCTTGTCGAGTGGAAT 200
consensus_13134#5      CTACCGTCGCG-----TCGCGATGGGGCCGGGCGTCGGCTTTGCTCTTGTCGAGTGGAAT 194
consensus_13134#1      CTACCGTCGCG-----TCGCGATGGGGCCGGGCGTCGGCTTTGCTCTTGTCGAGTGGAAT 705
consensus_13134#2      GTNCCGCAGGGAGAA-TCGCTGCTGGGCCGCCCGTCCTTCAGGGAGATGTNCTCCGCGCT 420
consensus_13134#3      GTNCCGCANGGANAA-TC-CTGCTGGGCCGCCCGTCCTTCAAGGANATGTNCTCCGCGCT 429
consensus_13134#0      GTACCGCAGGGAGAAGTCGCTGCTGGGCCGCCCGTCCTTCAGGGAGATGTACTCCGCGCT 439
                        * ***    *     ** *    ******  ****      *    ***     *   *

consensus_13134#4      CGAATCGGTGG-AGGCTTTGAAATTATTANTACTGNAAAGGNNAAAAAAAAAAAAATTCT 259
consensus_13134#5      CGAATCGGTGG-AGGCTTTGAAATTA-------------AAAAAAAAAAAAAAAAACTC- 239
consensus_13134#1      CGAATCGGTGG-AGGCTTTGAAATTATTACTACTGAGTTGTATGTGTATTTTTTTTTTCT 764
consensus_13134#2      CAACGCCGTGTCGGGCCA-TACATCAGCTTCGGCCCCACGGCCCCCATCCCCAACAAGCG 479
consensus_13134#3      CAACGCCGTGTCNGGCCACTACATCANCTTCNGCCC-ACGGGCCCCATCCCCAACA---- 484
consensus_13134#0      CAACGCCGTGTCGGGCCACTACATCAGCTTCGGCCCCACGGCCCCCATCCCCAACAAGCG 499
                       * *  * ***   ***    * ** *                                  

consensus_13134#4      CGA--------------------------------------------------------- 262
consensus_13134#5      ------------------------------------------------------------
consensus_13134#1      GTATGATTTTTGGTTCAGCTGACATGGTGAGGATTACACGGTTGGCTTGGGGACATGCAA 824
consensus_13134#2      CCGCGCCCG--------------------------------------------------- 488
consensus_13134#3      ------------------------------------------------------------
consensus_13134#0      CCGCGCCCGCATCCTCGAGGAGATGGACACCGCCGAGAAGGCCCTGCTCCGCGGCCGGTG 559
                                                                                   

consensus_13134#4      ------------------------------------------------------------
consensus_13134#5      ------------------------------------------------------------
consensus_13134#1      CTCCCTAGA--------------------------------------------------- 833
consensus_13134#2      ------------------------------------------------------------
consensus_13134#3      ------------------------------------------------------------
consensus_13134#0      AGGTGAGTGATGATTGATTGAGCCGAGTGCTTACGGCCACCGATCTTTCTCGTGTGAGAC 619
                                                                                   

consensus_13134#4      ------------------------------------------------------------
consensus_13134#5      ------------------------------------------------------------
consensus_13134#1      ------------------------------------------------------------
consensus_13134#2      ------------------------------------------------------------
consensus_13134#3      ------------------------------------------------------------
consensus_13134#0      GCACGCACGCGCGTGCGTACGCGGCACATTCACTTTTTGTAACTACTATACTACCGTCGC 679
                                                                                   

consensus_13134#4      ------------------------------------------------------------
consensus_13134#5      ------------------------------------------------------------
consensus_13134#1      ------------------------------------------------------------
consensus_13134#2      ------------------------------------------------------------
consensus_13134#3      ------------------------------------------------------------
consensus_13134#0      GTCGCGATGGGGCCGGGCGTCGGCTTTGCTCTTGTCGAGTGGAATCGAATCGGTGGAGGC 739
                                                                                   

consensus_13134#4      ------------------------------------------------------------
consensus_13134#5      ------------------------------------------------------------
consensus_13134#1      ------------------------------------------------------------
consensus_13134#2      ------------------------------------------------------------
consensus_13134#3      ------------------------------------------------------------
consensus_13134#0      TTTGAAATTATTACTACTGAGTTGTATGTGTATTTTTTTTTTCTGTATGATTTTTGGTTC 799
                                                                                   

consensus_13134#4      -----------------------------------------------------
consensus_13134#5      -----------------------------------------------------
consensus_13134#1      -----------------------------------------------------
consensus_13134#2      -----------------------------------------------------
consensus_13134#3      -----------------------------------------------------
consensus_13134#0      AGCTGACATGGTGAGGATTACACGGTTGGCTTGGGGACATGCAACCTCCCTAG 852
                                                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)