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Oryza sativa
cluster # 13139 cluster # 13139       Sequences # 12       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13139#0 length = 897 sequences # 6  
consensus_13139#1 length = 802 sequences # 4  
consensus_13139#2 length = 378 sequences # 1  
consensus_13139#3 length = 321 sequences # 1  

consensusID : consensus_13139#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 897
fasta sequence
                              [TTTTTTGGGGTCAACATCTTTTTAAAT-TATAAATTTGATACATG-AAAATCATACAT-GTCGAT-TTTGCATCA-AAAAGCACTTTCCTAGTATAACACATTGAGCGAGTTCTA-TAAGTATTTTACATTGTATATTAGTGATCAAAGTTGTA-TTTGAGAGAACATATT-GATGCCCAAAATGAAGTCTATTTGCGACTTTGAGGGACTACAAGTATGTACAGTAAACATAAGATCAATCATAGCATCCAATCTA----C--TTCTAATAAATGGTCAAGACAAAAAAAGCGCTTACCATAATCTGGCAAAACTCTTCTCTACATTTACAAGCAGTCAAATGCCATCCAGCATATAAGTGCCAGTTTCCCAGCTACGAGTCATCTTGTTGCCTTTCCATCTGTATTGACCGGAAAATCCGTGCTGCTGACTCTGAAGCTGTTTGTGAATTATTATGCGGAATGACCCT-AATAACATTGGTCTGG-TTGTCCCGGCTGCCA-AATGAGGGC-TGAGGCTGTGTGTTCTGAGCTGATGCTGTAGGGAAGGCGGACACAGGACCACTTCCACCGCATTGGAGCCTGTCAAAAGGACTGCTAGCGCTGCTGGCTTGCGCCTCACTATCTCTTGAGGCATGAAATCTCCAAATGCCACTTGGATGTGACATGTTGCATGACATCCGAGAGTGTTGCTCCAAGTTCCCATAAGGCTGTGGCATAGAAGGATGCCTGCCTTGTTCTACTGCAGATGCTAGTGCAACTGGGTTCATCACTGGTACACTGAAAGGCGGGAAGTAGTTCATAGGCATGGTAGGAGTGCCAGGAGCACCCATATGTTGTGGTTGATGAGGTATAGGAACACCATATGCTGAATTCATGAAATCTCCAGCTGTCGATGGGAGCCTCAGGGGAGT]

[-] EMBL BI813799             [TTTTTTGGGGTCAACATCTTTTTAAATATATAAATTTGATACATG AAAATCATACAT GT GAT TTTG ATCA AAAAGCACTTTCCTAGAATAACACATTGAGCGAGTTCTA TAAGTATTTTACA TGTATATTAGTGATCAAAG TGTA TTTGAGAGAACATA T GATGCCCAAAATGAAGTCTA TTG GACTTTGAGGGACTACAAGTATGTACAGTAAACATAAGATCAATCATAGCATCCAATCTAT   CAGTTCTAATAAATGGTCAAGACAAAAATAGCGCTTACCATAATCTGGCAAAACTCTTCTCTACATTTACAAGCAGTCAAATGCCATCCAGCATATAATTGCCAGTTTCCCAGCTACGAGTCATCTTGTTGCCTTTCCATCTGTATTGACCGGAAAATCCGTGCTGCTGACTCTGAAGCTG TTGTGAATTATTATGCGGAATGACCCTCAATAACATTGGTCTGGTTTGTCCCGGCTGGCAGAATGAGGCCTTGAGGCTt                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CB639246             [               ATCTTTTTAAAT TATAAATTTGATACATG AAAA CATACAT GTCGAT TTTGCATCA AAAAGC CTTTCCTAGTATAACACATTGAGCGAGTTCTATTAAGTATTTTACATTGTATATTAGTGATCAAAGTTGTATTTTGAGAGAACATATT GATGCCCAAAATGAAGTCTATTTGCGACTTTGAGGGACTACAAGTATGTTTAGTATTCATAAGATCAATCATAGCATCCAATCTA    C  TTCTAATAAATGGTCAAGACAAAAAAAGCGCTTACCATAATCTGGCAAAACTCTTCTCTACATTTACAAGCAGTCAAATGCCATCCAGCATATAAGTGCCAGTTTCCCAGCTACGAGTCATCTTGTTGCCTTTCCATCTGTATTGACCGGAAAATCCGTGCTGCTGACTCTGAAGCTGTTTGGGAATTATTATGCGGAATGACCCT AATAACATTGGTCTGG TTGTCCCGGCTGCCA AATGAAGGC TGAAGCTGTGT                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CB638262             [                            TATAAATTTGATACATGCAAAATCATACATGGTCGATATTTGCATCAGAAAAGCACTTTCCTAGTTTAACACATTGAGCGAGTTCTATTAAGTATTTTACATTGTATATTAGTGATCAAAGTTGTA TTTGAGAGAACATATT GATGCCCAAAATGAAGTCTATTTGCGACTTTGAGGGACTACAAGTATGTACAGTAAACATAAGATCAATCATAGCATCCAATCTA    C  TTCTAATAAATGGTCAAGACAAAAAAAGCGCTTACCATAATCTGGCAAAACTCTTCTCTACATTTACAAGCAGTCAAATGCCATCCAGCATATAAGTGCCAGTTTCCCAGCTACGAGTCATCTTGTTGCCTTTCCATCTGTATTGACCGGAAAATCCGTGCTGCTGACTCTGAAGCTGTTTGTGAATTATTATGCGGAATGACCCT AATAACATTGGTCTGG TTGTCCCGGCTGCCA AATGAGGGC TGAGGCTGTGTGTTCTGAGCTGATGCTGTAGGGAAGGCGGACACAGGACCACTTCCACCGCATTGGAGCCTGTCAAAAAGACTGCTAACGCTGC                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CB628949             [                                                                                                       tcctttaaTCTA TAAGTATTTTACATTGTATATTAGTGATCCCATTTGTA TTTGAGAGAACATATT GATGCCCAAAATGAAGTCTATTTGCGACTTTGAGGGACTACAAGTATGTACAGTAAACATAAGATCAATCATAGCATCCAATCTATCAGC  TTCTAATAAATGGTCAAGACAAAAATAGCGCTTACCATAATCTGGCAAAACTCTTCTCTACATTTACAAGCAGTCAAATGCCATCCAGCATATAAGTGCCAGTTTCCCAGCTACGAGTCATCTTGTTGCCTTTCCATCTGTATTGACCGGAAAATCCGTGCTGCTGACTCTGAAGCTGTTTGTGAATTATTATGCGGAATGACCCT AATAACATTGGTCTGG TTGTCCCGGCTGCCA GATGAGGGC TGAGGCTGTGTGTTCTGAGCTGATGCTGTAGGGAAGGCGGACACAGGACCACTTCCACCGCATTGGAGCCTGTCAAAAGGACTGCTAGCGCTGCTGGCTTGCGCCTCACTATCTCTTGAGGCATGAAATCTCCAAATGCCACTTGGATGTGACATGTTGCATGACATCCGAGAGTGTTGCTCGAAGTTCCCATAAGGCTGTGGCATAGAAGGATTCCTGCCTTGTTCTACTGCAGATGCTAGTGCAACTGGGTTCATCACTGGTACACTGAAAGGCGGGAAGTAGTTCATAGGCATGGTAGGAGTGCCAGGAGCACCCATATGTTGTGGTTGATGAGGTATAGGAACACCATATGCTGAATTCATGAAATCTCCAGCTG                      ]
[+] EMBL CB673178             [                                                                                                                                            TGATCAAAGTTGTA TTTGAGAGAACATATTCGCTTTCCAAAATGAAGTCTATTTGCGACTTTGAGGGACTACAAGTATGTACAGTAAACATAAGATCAATCATAGCATCCAATCTA    C  TTCTAATAAATGGTCAAGACAAAAAAAGCGCTTACCATAATCTGGCAAAACTCTTCTCTACATTTACAAGCAGTCAAATGCCATCCAGCATATAAGTGCCAGTTTCCCAGCTACGAGTCATCTTGTTGCCTTTCCATCTGTATTGACCGGAAAATCCGTGCTGCTGACTCTGAAGCTGTTTGTGAATTATTATGCGGAATGACCCT AATAACATTGGTCTGG TTGTCCCGGCTGCCA GATGAGGGC TGAGGCTGTGTGTTCTGAGCTGATGCTGTAGGGAAGGCGGACACAGGACCACTTCCACCGCATTGGAGCCTGTCAAAAGGACTGCTAGCGCTGCTGGCTTGCGCCTCACTATCTCTTGAGGCATGAAATCTCCAAATGCCACTTGGATGTGACATGTTGCATGACATCCGAGAGTGTTGCTCCAAGTTCCCATAAGGCTGTGGCATAGAAGGATGCCTGCCTTGTTCTACTGCAGATGCTAGTGCAACTGGGTTCATCACTGGTACACTGAAAGGCGGGAAGTAGTTCATAGGCATGGTAGGAGTGCCAGGAGCACCCATATGTTGTGGTTGATGAGGTATAGGAACACCATATGCTGAATTCATGAAATCTCCAGTTGTCGATGGGAGCCTCAGGGGAGT]
[+] EMBL CB638961             [                                                                                                                                                                                                                                                                                            AAAAAAATCGCTTACCATAATCTGGCAAAACTCTTCTCTACATTTACAAGCAGTCAAATGCCATCCAGCATATAAGTGCCAGTTTCCCAGCTACGAGTCATCTTGTTGCCTTTCCATCTGTATTGACCGGAAAATCCGTGCTGCTGACTCTGAAGCTGTTTGTGAATTATTATGCGGAATGACCCT AATAACATTGGTCTGG TTGTCCCGGCTGCCA AATGAGGGC TGAGGCTGTGTGTTCTGAGCTGATGCTGTAGGGAAGGCGGACACAGGACCACTTCCACCGCATTGGAGCCTGTCAAAAGGACTGCTAGCGCTGCTGGCTTGCGCCTCACTATCTCTTGAGGCATGAAATCTCCAAATGCCACTTGGATGTGACATGTTGCATGACATCCGAGAGTGTTGCTCCAAGTTCCCATAAGGCTGTGGCATAGAAAGATGCCTGCCTTGTTCTACTGCAGATGCTAGTGCAACTGGGTTCATCACTGGTACACTGAAAGG                                                                                                                              ]


>consensus_13139#0 TTTTTTGGGGTCAACATCTTTTTAAATTATAAATTTGATACATGAAAATCATACATGTCG ATTTTGCATCAAAAAGCACTTTCCTAGTATAACACATTGAGCGAGTTCTATAAGTATTTT ACATTGTATATTAGTGATCAAAGTTGTATTTGAGAGAACATATTGATGCCCAAAATGAAG TCTATTTGCGACTTTGAGGGACTACAAGTATGTACAGTAAACATAAGATCAATCATAGCA TCCAATCTACTTCTAATAAATGGTCAAGACAAAAAAAGCGCTTACCATAATCTGGCAAAA CTCTTCTCTACATTTACAAGCAGTCAAATGCCATCCAGCATATAAGTGCCAGTTTCCCAG CTACGAGTCATCTTGTTGCCTTTCCATCTGTATTGACCGGAAAATCCGTGCTGCTGACTC TGAAGCTGTTTGTGAATTATTATGCGGAATGACCCTAATAACATTGGTCTGGTTGTCCCG GCTGCCAAATGAGGGCTGAGGCTGTGTGTTCTGAGCTGATGCTGTAGGGAAGGCGGACAC AGGACCACTTCCACCGCATTGGAGCCTGTCAAAAGGACTGCTAGCGCTGCTGGCTTGCGC CTCACTATCTCTTGAGGCATGAAATCTCCAAATGCCACTTGGATGTGACATGTTGCATGA CATCCGAGAGTGTTGCTCCAAGTTCCCATAAGGCTGTGGCATAGAAGGATGCCTGCCTTG TTCTACTGCAGATGCTAGTGCAACTGGGTTCATCACTGGTACACTGAAAGGCGGGAAGTA GTTCATAGGCATGGTAGGAGTGCCAGGAGCACCCATATGTTGTGGTTGATGAGGTATAGG AACACCATATGCTGAATTCATGAAATCTCCAGCTGTCGATGGGAGCCTCAGGGGAGT



consensusID : consensus_13139#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 802
fasta sequence
                              [TTTTTTTTTT-----TAAAAAGAGCGGGGTCTTTTCCCCAGCTCATTAGCTTTAGTATTATTCTGCTTAACTGACCAGCAAGGGCTTTACATAGCGTTAAAGTTAAACAGATACTGTCCTGTCCTACTGTACAAAATACATTACAAATGGA-CGAAGGGGCGACATCACCCTG-ACGGAGCCCGCCCTTGAGAATATACAGTATCATCATCTGTCTATAAACGGTCAGGATAAATATAGGGGTCACCATAATCTGGCAAACCTCTTCTCTACATTTACCAAGTCATCAAA-TGCATCCAGCATAAAATTGCCAGTTCTCA-TGGCTATCAATCATCTCGTTGCCGTTCCATTTGTA-TTGACCGGAAAATCCGTGCTGCTGACTCTGAAGCAGTTCGTGAATTATGTGG-AA-CAACCTTGATAACATTGGTCTGGTTGTCCCGGCTGCTATATGAGGGCTGAGGCTGGTTGTTCTGAGCTGATACTGTGGGGAAGGCGGATACAGGACCACTTCCACACTGCAATTGTGAACCTGTCACAACAGGACTGGCTAGCGCTGCTGGCCTGTGCCTCGCTATCTCTTGAGG-ATGAAATCTCCAAATGCCACTCTGGATGTGACATGTTACATGAGATCCACGACTGTGGTTCAAAGTTCCCATAAGGCTGTGGCATCGAAGGATGTCTCCCTTGTTCGACTACAGGTGCCGGTGCAGTTGGGTTCATCACTGGTATGCTGAAAGGCGGGAAGTAGTTCATAGGCATGGAAGGAGGGCCAGGAGCACCCATATGTTGTGGCTGATGAGGCATAGGAAC]

[-] EMBL BM038779             [TTTTTTTTTTGGAGATAAAAAGAGCGGGGTCTTTTCCCCAGCTCATTAGCTTTAGTATTATTCTGNTTAACTGACCAGCAAGGGCTTTACATAGCGTTAAAGTTAAACAGATACGGTCCGGTCCTACGGTACAAAATACATTACAAATGGAGCGAAGGGGCGANATCACCCTGTACGGAGCCCGCCCTTGAGAATATACAGTATCATCATCTGTCTATAAACGGTCAGGATAAATATAGGGGTCACCATAATCTGGCAAACCTCTTCTCTACATTTACCAAGTCATCAAAGTGCATCCAGCATAAAATGGCCAGTTCTCAGTGGCTATCAATCATCTCGTTGCCGTTCCATTNGTA TTGACCGGAAAATCCGTGCTG TGACTCTGAAGCAGTTCGTGAATTATGTGG AA CAACCTTGATAACATTGGTCTGGTTGTCCCGGCTGCTATAT                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL BI812974             [ TTTTTTTTT     TAAAAAGAGCGGGGTCTTTTCCCCAGCTCATTAGCTTTAGTATTATTCTGCTTAACTGACCAGCAAGGGCTTTACATAGCGTTAAAGTTAAACAGATACTGTCCTGTCCTACTGTACAAAATACATTACAAATGGA CGAAGGGGCGACATCACCCTG ACGGAGCCCGCCCTTGAGAATATACAGTATCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL BI808253             [                    AGAGCGGGGTCTTTTCCCCAGCTCATTAGCTTTAGTATTATTCTGCTTAACTGACCAGCAATGGCTTTACATAGCGTTAAAGTTAAACAGATACTGTCCTGTCCTACTGTACAAAATACATTACAAATTGA CGAAGGGGCGACATCACCCTG ACGGAGCCCGCCCTTGAGAATATACAGTATCATCATCTGTCTATAAACGGTCAGGATAAATATAGGGGTCACCATAATCTGG AAACCTCTTCTCTACATTTACCAAGTCATCAAA TGCATCCAGCATAAAATTG CAGTTCTCA TGGCTATCAATCATCTCGTTGCCGTTCCATTTGTATTTGACCGGAAAATCCGTGCTGCTGACTCTGAAGCAGTTCGTGACTTATGTGGCAACCAACCTTGATAACATTGGTCTGGTTGTCCCGGCTGCTATATGAGGGCTGAGGCTGGTTGTTCTGAGCTGATACTGTGGGGAAGGCGGATACAGGACCACTTCCACACTGCAATTGTGAACCTGTCACAACAGGACTGGCTAGCGCTGCTGGCCTGTGCCTCGCTATCTCTTGAGG ATGAAATCTCCAAATGCCACTCTGGATGTGACATGTTACATGAGATCCACGACTGTGGT                                                                                                                                                                       ]
[+] EMBL CB635676             [                         GGGGTCTTTTCCCCAGCTCATTAGCTTTAGTATTATTCTGCTTAACTGACCAGCAATGGCTTTACATAGCGTTAAAGTTAAACAGATACTGTCCTGTCCTACTGTACAAAATACATTACAAATTGA CGAAGGGGCGACATCACCCTG ACGGAGCCCGCCCTTGAGAATATACAGTATCATCATCTGTCTATAAACGGTCAGGATAAATATAGGGGTCACCATAATCTGGCAAACCTCTTCTCTACATTTACCAAGTCATCAAA TGCATCCAGCATAAAATTGCCAGTTCTCA TGGCTATCAATCATCTCGTTGCCGTTCCATTTGTA TTGACCGGAAAATCCGTGCTGCTGACTCTGAAGCAGTTCGTGAATTATGTGG AA CAACCTTGATAACATTGGTCTGGTTGTCCCGGCTGCCATATGAGGGCTGAGGCTGGTTGTTCTGAGCTGATGCTGTGGGGAAGGCGGATACAGGACCACTTC  CACTGC ATTG GAACCTGTCA AA AGGACT GCTAGCGCTGCTGGCCTGTGCCTCGCTATCTCTTGAGGCATGAAATCTCCAAATGCCACT TGGATGTGACATGTTACATGAGATCCACGACTGCTGCTCAAAGTTCCCATAAGGCTGTGGCATCGAAGGATGTCTCCCTTGTTCGACTACAGGTGCCGGTGCAGTTGGGTTCATCACTGGTATGCTGAAAGGCGGGAAGTAGTTCATAGGCATGGAAGGAGGGCCAGGAGCACCCATATGTTGTGGCTGATGAGGCATAGGAAC]


>consensus_13139#1 TTTTTTTTTTTAAAAAGAGCGGGGTCTTTTCCCCAGCTCATTAGCTTTAGTATTATTCTG CTTAACTGACCAGCAAGGGCTTTACATAGCGTTAAAGTTAAACAGATACTGTCCTGTCCT ACTGTACAAAATACATTACAAATGGACGAAGGGGCGACATCACCCTGACGGAGCCCGCCC TTGAGAATATACAGTATCATCATCTGTCTATAAACGGTCAGGATAAATATAGGGGTCACC ATAATCTGGCAAACCTCTTCTCTACATTTACCAAGTCATCAAATGCATCCAGCATAAAAT TGCCAGTTCTCATGGCTATCAATCATCTCGTTGCCGTTCCATTTGTATTGACCGGAAAAT CCGTGCTGCTGACTCTGAAGCAGTTCGTGAATTATGTGGAACAACCTTGATAACATTGGT CTGGTTGTCCCGGCTGCTATATGAGGGCTGAGGCTGGTTGTTCTGAGCTGATACTGTGGG GAAGGCGGATACAGGACCACTTCCACACTGCAATTGTGAACCTGTCACAACAGGACTGGC TAGCGCTGCTGGCCTGTGCCTCGCTATCTCTTGAGGATGAAATCTCCAAATGCCACTCTG GATGTGACATGTTACATGAGATCCACGACTGTGGTTCAAAGTTCCCATAAGGCTGTGGCA TCGAAGGATGTCTCCCTTGTTCGACTACAGGTGCCGGTGCAGTTGGGTTCATCACTGGTA TGCTGAAAGGCGGGAAGTAGTTCATAGGCATGGAAGGAGGGCCAGGAGCACCCATATGTT GTGGCTGATGAGGCATAGGAAC



consensusID : consensus_13139#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 378
fasta sequence
                              [CTGTTGGCAATATAAATCACACACTTATAAAAGCAAATCCCCCCAAATGGCGCGGGGCCTTAACTCGTAATCAGGGGTCACAAAAAAAAGAAATAAAAAGAGCGGGGTCTTTTCCCCAGCTCATTAACTTTAGAATTATTCTGCTTAACTGACCACCAATGGCTTTACATAACGTTAAAGTTAAACAGATACTGTCCTGTCCTACTGTACAAAATACATTACAAATTGACGAAGGGGCGACATCACCCTGACGGAGCCCGCCCTTGAAAATATACAGTATCATCATCTGTTTATGAGGGGTAAAGATAAATATAGGGGCCACCATATTTTGGCAAACCTCTTCTCTACTTTTACCAAGTCATCAAATGCCTCCAACAT]

[+] EMBL CB647220             [CTGTTGGCAATATAAATCACACACTTATAAAAGCAAATCCCCCCAAATGGCGCGGGGCCTTAACTCGTAATCAGGGGTCACAAAAAAAAGAAATAAAAAGAGCGGGGTCTTTTCCCCAGCTCATTAACTTTAGAATTATTCTGCTTAACTGACCACCAATGGCTTTACATAACGTTAAAGTTAAACAGATACTGTCCTGTCCTACTGTACAAAATACATTACAAATTGACGAAGGGGCGACATCACCCTGACGGAGCCCGCCCTTGAAAATATACAGTATCATCATCTGTTTATGAGGGGTAAAGATAAATATAGGGGCCACCATATTTTGGCAAACCTCTTCTCTACTTTTACCAAGTCATCAAATGCCTCCAACAT]


>consensus_13139#2 CTGTTGGCAATATAAATCACACACTTATAAAAGCAAATCCCCCCAAATGGCGCGGGGCCT TAACTCGTAATCAGGGGTCACAAAAAAAAGAAATAAAAAGAGCGGGGTCTTTTCCCCAGC TCATTAACTTTAGAATTATTCTGCTTAACTGACCACCAATGGCTTTACATAACGTTAAAG TTAAACAGATACTGTCCTGTCCTACTGTACAAAATACATTACAAATTGACGAAGGGGCGA CATCACCCTGACGGAGCCCGCCCTTGAAAATATACAGTATCATCATCTGTTTATGAGGGG TAAAGATAAATATAGGGGCCACCATATTTTGGCAAACCTCTTCTCTACTTTTACCAAGTC ATCAAATGCCTCCAACAT



consensusID : consensus_13139#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 321
fasta sequence
                              [TTATATAGNGTGTAGGAGGAATGATGGTTTGCCACGATTTATTCGGTTGANCCCTCGTATTATTTTTATCCGCTGAGCCGTTTTAGTAGGACCACTGANGTGATCTGAGTACTGNTATTATTTTCTCCTATGGGCGGGCTCCGTCACGGGTGATGTCGCCCCTTCGGTCCAGTGTTGTAATGTATTGTTGGTACAGTAGGACACGGACAGTATCTGTTTAACGGTTAACGCGTATGTAAAGCCCTTGCTGGTCAGTTAAGCAGAATAATACTATAAGCTAATGAGCTGGGGAAATAGACCCCGCTCTTTTTAAAAAAAAAA]

[+] EMBL BQ908116             [TTATATAGNGTGTAGGAGGAATGATGGTTTGCCACGATTTATTCGGTTGANCCCTCGTATTATTTTTATCCGCTGAGCCGTTTTAGTAGGACCACTGANGTGATCTGAGTACTGNTATTATTTTCTCCTATGGGCGGGCTCCGTCACGGGTGATGTCGCCCCTTCGGTCCAGTGTTGTAATGTATTGTTGGTACAGTAGGACACGGACAGTATCTGTTTAACGGTTAACGCGTATGTAAAGCCCTTGCTGGTCAGTTAAGCAGAATAATACTATAAGCTAATGAGCTGGGGAAATAGACCCCGCTCTTTTTAAAAAAAAAA]


>consensus_13139#3 TTATATAGNGTGTAGGAGGAATGATGGTTTGCCACGATTTATTCGGTTGANCCCTCGTAT TATTTTTATCCGCTGAGCCGTTTTAGTAGGACCACTGANGTGATCTGAGTACTGNTATTA TTTTCTCCTATGGGCGGGCTCCGTCACGGGTGATGTCGCCCCTTCGGTCCAGTGTTGTAA TGTATTGTTGGTACAGTAGGACACGGACAGTATCTGTTTAACGGTTAACGCGTATGTAAA GCCCTTGCTGGTCAGTTAAGCAGAATAATACTATAAGCTAATGAGCTGGGGAAATAGACC CCGCTCTTTTTAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13139#1      ------------------------------------------------------------
consensus_13139#2      CTGTTGGCAATATAAATCACACACTTATAAAAGCAAATCCCCCCAAATGGCGCGGGGCCT 60
consensus_13139#0      -----------------------TTTTTTGGGGTCAACATCTTTTTAAATTATAAA--TT 35
consensus_13139#3      ------------------------------------------------------------
                                                                                   

consensus_13139#1      -----------------------TTTTTTTTTTTAAAAAGAGCGGGGTCTTTTCCCCAGC 37
consensus_13139#2      TAACTCGTAATCAGGGGTCACAAAAAAAAGAAATAAAAAGAGCGGGGTCTTTTCCCCAGC 120
consensus_13139#0      TGATACATGAAAATCATACATGTCGATTTTGCATCAAAAAG-------CACTTTCCTAGT 88
consensus_13139#3      ------------------------------------------------------------
                                                                                   

consensus_13139#1      TCATTAGCTTTAG-TATTATTCTGCTTAACTGACCAGCAAGGGCTTTACATAGCGTTAAA 96
consensus_13139#2      TCATTAACTTTAG-AATTATTCTGCTTAACTGACCACCAATGGCTTTACATAACGTTAAA 179
consensus_13139#0      ATAACACATTGAGCGAGTTCTATAAGTATTTTACATTGTATATTAGTGATCAAAGTTGTA 148
consensus_13139#3      ------------------------------------------------------------
                                                                                   

consensus_13139#1      GTTAAACAGATACTGTCCTGTCCTACTGTACAAAATACATTACAAATGGACGAAGGGGCG 156
consensus_13139#2      GTTAAACAGATACTGTCCTGTCCTACTGTACAAAATACATTACAAATTGACGAAGGGGCG 239
consensus_13139#0      TTTGAGAGAACATATTGATGCCCAA---AATGAAGTCTATTTGCGACT--TTGAGGGACT 203
consensus_13139#3      ------------------------------------------------------------
                                                                                   

consensus_13139#1      ACATCACCCTGACGGAGCCCGCCCTTGAGAATATACAGTATC--ATCATCTGTCTATAAA 214
consensus_13139#2      ACATCACCCTGACGGAGCCCGCCCTTGAAAATATACAGTATC--ATCATCTGTTTATGAG 297
consensus_13139#0      ACA--AGTATG-TACAGTAAACATAAGATCAATCATAGCATCCAATCTACTTCTAATAAA 260
consensus_13139#3      ------------------------------------------------------------
                                                                                   

consensus_13139#1      CGGTCAGGATAAATATAGGGGTCACCATAATCTGGCAAACCTCTTCTCTACATTTACCAA 274
consensus_13139#2      GGGTAAAGATAAATATAGGGGCCACCATATTTTGGCAAACCTCTTCTCTACTTTTACCAA 357
consensus_13139#0      TGGTCAAGACAAAAAAAGCGCTTACCATAATCTGGCAAAACTCTTCTCTACATTTAC-AA 319
consensus_13139#3      ------------------------------------------------------------
                                                                                   

consensus_13139#1      GTCATCAAATGCA-TCCAGCATAAAATTGCCAGTTCTCATGGCTATCAATCATCTCGTTG 333
consensus_13139#2      GTCATCAAATGCC-TCCAACAT-------------------------------------- 378
consensus_13139#0      GCAGTCAAATGCCATCCAGCATATAAGTGCCAGTT-TCCCAGCTACGAGTCATCTTGTTG 378
consensus_13139#3      ------------------------------------------------------------
                                                                                   

consensus_13139#1      CCGTTCCATTTGTATTGACCGGAAAATCCGTGCTGCTGACTCTGAAGCAGTTCGTGAATT 393
consensus_13139#2      ------------------------------------------------------------
consensus_13139#0      CCTTTCCATCTGTATTGACCGGAAAATCCGTGCTGCTGACTCTGAAGCTGTTTGTGAATT 438
consensus_13139#3      ------------------------------------------------------------
                                                                                   

consensus_13139#1      AT---GTGGAACAACCTTGATAACATTGGTCTGGTTGTCCCGGCTGCTATATGAGGGCTG 450
consensus_13139#2      ------------------------------------------------------------
consensus_13139#0      ATTATGCGGAATGACCCTAATAACATTGGTCTGGTTGTCCCGGCTGCCAAATGAGGGCTG 498
consensus_13139#3      ------------------------------------------------------------
                                                                                   

consensus_13139#1      AGGCTGGTTGTTCTGAGCTGATACTGTGGGGAAGGCGGATACAGGACCACTTCCACAC-T 509
consensus_13139#2      ------------------------------------------------------------
consensus_13139#0      AGGCTGTGTGTTCTGAGCTGATGCTGTAGGGAAGGCGGACACAGGACCACTTCCAC---- 554
consensus_13139#3      ------------------TTATATAGNGTGTAGGAGGAATGATGGTTTGCCACGATTTAT 42
                                                                                   

consensus_13139#1      GCAATTGTGAACCTGTCACAACAGGACTGGCT-AGCGCTGCTGGCCTGTGCCTCGCTATC 568
consensus_13139#2      ------------------------------------------------------------
consensus_13139#0      -CGCATTGGAGCCTGTCAAAA---GGACTGCT-AGCGCTGCTGGCTTGCGCCTCACTATC 609
consensus_13139#3      TCGGTTGANCCCTCGTATTATTTTTATCCGCTGAGCCGTTTTAGTAGGACCACTGANGTG 102
                                                                                   

consensus_13139#1      TCTTGAGGATGAAATCTCCAAATGCCACTCTGGATGTGACATGTTACATGAGAT-CCACG 627
consensus_13139#2      ------------------------------------------------------------
consensus_13139#0      TCTTGAGGCATGAAATCTCCAAATGCCACTTGGATGTGACATGTTGCATGACAT-CCGAG 668
consensus_13139#3      ATCTGAGTACTGNTATTATT--TTCTCCTATGGGCGGGCTCCGTCACGGGTGATGTCGCC 160
                                                                                   

consensus_13139#1      ACTGTGGTTCAAAGTTCCCATAAGGCTGTGGCATCGAAGGATGTCTCCCTTGTTCGACTA 687
consensus_13139#2      ------------------------------------------------------------
consensus_13139#0      AGTGTTGCTCCAAGTTCCCATAAGGCTGTGGCATAGAAGGATGCCTGCCTTGTTCTACTG 728
consensus_13139#3      CCTTCGGTCCAGTGTTGTAATGTATTGTTGGTACAGTAGGACACGGACAGTATCTGTTTA 220
                                                                                   

consensus_13139#1      CAGGTGCCGGTGCAGTTGGGTTCATCACTGGTATGCTGAAAGGCGGGAAGTAGTTCATAG 747
consensus_13139#2      ------------------------------------------------------------
consensus_13139#0      CAGATGCTAGTGCAACTGGGTTCATCACTGGTACACTGAAAGGCGGGAAGTAGTTCATAG 788
consensus_13139#3      ACGGTTAACGCGTATGTAAAGCCCTTGCTGGTCAGTT--AAGCAGAATAATACT--ATAA 276
                                                                                   

consensus_13139#1      GCATGGAAGGAGGGCCAGGAGCACCCATATGTTGTGGCTGATGAGGCATAGGAAC----- 802
consensus_13139#2      ------------------------------------------------------------
consensus_13139#0      GCATGGTAGGAGTGCCAGGAGCACCCATATGTTGTGGTTGATGAGGTATAGGAACACCAT 848
consensus_13139#3      GCTAATGAGCTGGGGAAATAGACCCCGCTCTTTTTAAAAAAAAAA--------------- 321
                                                                                   

consensus_13139#1      -------------------------------------------------
consensus_13139#2      -------------------------------------------------
consensus_13139#0      ATGCTGAATTCATGAAATCTCCAGCTGTCGATGGGAGCCTCAGGGGAGT 897
consensus_13139#3      -------------------------------------------------
                                                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)