These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13149#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 399 fasta sequence [TACAGTGTGGTTGTTGCTAGTCGATCAGTTATACCAAAGTGTAGAACACTAATATAAGCTCAGATCTACACGAGACCGAACCTCTCGAACCCTTTCTTGCTACAGTAAATTCCCCACCCTCGACCCCTCTTCCTCCTCGATTCCGGCGACCTCGTCGCG-CNG-NG-CGG-G-A-GG-G-AGA--GGGGTCGTCCCCCCTCCCCCATAGTAGTTACGTAGTCGGGCTAGTCTCGTTAGGTCGGGTTCTTCCCGTTTTCTTCTCGTTAGTGAGGCGATGGAAGTTGGAGATGGCGGCGGCGAC-G-GA-TTGTGACCAGCGACGGTGGAGGCGACGAGGTTACGGCTCGCAACTGCGA-TGGCGACGCGGATACGACCCGAGGCGACGGNGGCCGCCACCGGNGGTTGAGCTTT] [+] EMBL OSC022 [TACAGTGTGGTTGTTGCTAGTCGATCAGTTATACCAAAGTGTAGAACACTAATATAAGCTCAGATCTACACGAGACCGAACCTCTCGAACCCTTTCTTGCTACAGTAAATTCCCCACCCTCGACCCCTCTTCCTCCTCGATTCCNGCGACCTCG GCG GNG N CGG GNA GGTG AGA GGGGTCGTCCCCCCTCCCCCATAGTAGTTACGTAGTCGGGCTAGTCTCGTTAGGTCGGGTTCTTCCCGTTTTCTTCTCGTTAGTGAGGCGATGGAA ] [+] EMBL AU172939 [ AAGCTCAGATCTACACGAGACCGAACCTCTCGAACCCTTTCTTGCTACAGTAAATTCCCCACCCTCGACCCCTCTTCCTCCTCGATTCCGGCGACCTCGTCGC CGGCGG CGG G A GG GNANAAGGGGGTCNTCCCCCCTCCCCCATAGTANTTACGTAGTCGGGCTAGTCTCGTTAGGTCGGGTTCTTCCCGTTTTCTTCTCGTTAGTGAGGCGATGGAAGTTGGAGATGGCGGCGGCGAC GCGA TTGTGACCAGCGACGGTGGAGGCGACGAGGTTACGGNTCGCAACTGCGA TGGCGACGCGGATACGACCCGAGGCGACGGNG ] [+] EMBL AU172938 [ AAGCTCAGATCTACACGAGACCGAACCTCTCGAACCCTTTCTTGCTACAGTAAATTCCCCACCCTCGACCCCTCTTCCTCCTCGATTCCGGCGACCTCGTCGC CGGCGG CGG G A GG GAAGAG GGGGTCGTCCCCCCTCCCCCATAGTAGTTACGTAGTCGGGCTAGTCTCGTTAGGTCGGGTTCTTCCCGTTTTCTTCTCGTTAGTGAGGCGATGGAAGTTGGAGATGGCGGCGGCGAC GCGA TTGTGACCAGCGACGGTGGAGGCGACGAGGTTACGGNTCGCAACTGCGA TGGCGACGCGGATACGACCCGAGGCGACGGNG ] [+] EMBL AU064608 [ AAGCTCAGATCTACACGAGACCGAACCTCTCGAACCCTTTCTTGCTACAGTAAATTCCCCACCCTCGACCCCTCTTCCTCCTCGATTCCGGCGACCTCGTCNC CNG G CGGNGNA GG G AGA GGGGTCGTCCCCCCTCCCCCATAGTAGTTACGTAGTCGGGCTAGTCTCGTTAGGTCGGGTTCTTCCCGTTTTCTTCTCGTTAGTGAGGCGATGGAAGTTGGAGATGGCGGCGGCGAC G GA TTGTGACCAGCGACGGTGGAGGCGACGAGGTTACGGCTCGCAACTGCGA TGGCGACGCGGATACGACCCGAGGC ] [+] EMBL AU065062 [ AAGCTCAGATCTACACGAGACCGAACCTCTCGAACCCTTTCTTGCTACAGTAAATTCCCCACCCTCGACCCCTCTTCCTCCTCGATTCCGGCGACCTCGTCG G CTG TG CGGTGAA GG G AGA GGGGTCGTCCCCCCTCCCCCATAGTAGTTACGTAGTCGGGCTAGTCTCGTTAGGTCGGGTTCTTCCCGTTTTCTTCTCGTTAGTGAGGCGATGGAAGTTGGAGATGGCGGCGGCGACGG GA TTGTGACCAGCGACGGTGGAGGCGACGAGGTTACGGCTCGCAACTGCGA TGGCGACGCGGATACGACC ] [+] EMBL AU064579 [ AAGCTCAGATCTACACGAGACCGAACCTCTCGAACCCTTTCTTGCTACAGTAAATTCCCCACCCTCGACCCCTCTTCCTCCTCGATTCCGGCGACCTCGTCG G CAG NG CGGNG A GG G AGA GGGGTCGTCCCCCCTCCCCCATAGTAGTTACGTAGTCGGGCTAGTCTCGTTAGGTCGGGTTCTTCCCGTTTTCTTCTCGTTAGTGAGGCGATGGAAGTTGGAGATGGCGGCGGCGAC G GA TTGTGACCAGCGACGGTGGAGGCGACGAGGTTACGGCTCGCAACTGCGA TGGCGACGCGGATACGACC ] [+] EMBL AU064176 [ AAGCTCAGATCTACACGAGACCGAACCTCTCGAACCCTTTCTTGCTACAGTAAATTCCCCACCCTCGACCCCTCTTCCTCCTCGATTCCGGCGACCTCGTCGCGACNG NG CGG G A GG G AGA GGGGTCGTCCCCCCTCCCCCATAGTAGTTACGTAGTCGGGCTAGTCTCGTTAGGTCGGGTTCTTCCCGTTTTCTTCTCGTTAGTGAGGCGATGGAAGTTGGAGATGGCGGCGGCGAC GNGA TTNTGACCAGCGACGGTGGAGGCGACGAGGTTACGGCTCGCAACTGCGATTGGCGACGNGGATACGACCCNAGGCGACGGCGGCCGC ] [+] EMBL C74623 [ AGCTCAGATCTACACGAGACCGAACCTCTCGAACCCTTTCTTGCTACAGTAAATTCCCCACCCTNGACCCCTCTTCCTNCTCGATTCCGGCGACCTCGTC NG CTG NG CGGNT A GG G AGA GGGGTCGTCCCCCCTCCCCNATAGTAGTTACGTAGTCGGGCTAGTCTCGTTAGGTCGGGTTCTTCCCGTTTTCTTCTCGTTAGTGAGGCGATGGAAGTTGGAGATGGCGGCGGCGAC G GA TTGTGACCAGCGACGGTGGAGGCGACGAGGTTACGGCTCGNAACTGCGA TNGCGACGCGG ] [+] EMBL C28972 [ CGAACCCTTTNTTGCTACAGTAAATTCCCCACCCTCGACCCCTCTTCCTCCTCGATTCCNGCGACCT CG CNG NGNCGG G ATGG G AGA GGGGTCGTCCCCCCTCCCCCATAGTAGTTACGTAGTCGGGCTAGTCTCGTTAGGTCGGGTTCTTCCCGTTTTCTTCTCGTTAGTGAGGCGATGGAAGTTGGAGATGGCGGCGGCGAC G AATTTGTGACCAGCGACGGTNGAGGCGACGAGGTTACGG ] [+] EMBL OS0439A [ TTTCTTGCTACAGTAAATNCCCCACCCTCGACCCCTCTTCCTCCTCGATTCCGGCGACCTCGTCGCG CTG G CGG GNN GG G AGA GGGGTCGTCCCCCCTCCCCCATAGTAGTTACGTAGTCGGGCTAGTCTCGTTAGGTCGGGTTCTTCCCGTTTTCTTCTCGTTAGTGAGGCGATGGAAGTTGGAGATGGCGGCGGCGAC GCGA TTGTGACCAGCGACGGTGGAGGCGACGAGGTTACGGCTCGCAACTGCGA TNGNGACGCGGATACGACCCGAGGCGACGGNGGCCGGCACCGGNGGTTGAGCTTT] [+] EMBL OSC4591 [ CCACCCTNGANCCCTCTTCCTCCTCGATTCCGGCGACCTCGTCG N CTG NG CGG GNA GG G AGA GGGGTCGTCCCCCCTCCCCCATAGTAGTTACGTAGTCGGGCTAGTNTCGTTAGGTCGGGTTCTTCCCGTTTNNTTCTCGTTAGTNAGGCGATGGAAGTTGGAGATGGCGGCGGCGAC G GA TTTTAACCAGCGACGGTGGAGGCGACGAGGTTACGGCTCGCAACTNCNA TGGCGACGCGGATACGACC ] [+] EMBL AU165002 [ TTCTCGTTAGTGAGGCGATGGAAGTTGGAGATGGCGGCGGCGAC G GA TTGTNACCAGCGACGGTGGAGGCGACGAGGTTACGGCTCGCAACTGCNA TGGCGACGCGGATACGACC ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||