These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13172#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 552 fasta sequence [CCGCCTCCGCCTCCCCCNCCGCGCTCTCTGCCGCGGTCTCGGCGTCGCTGACCTTCACCTCTGCCTCCTCATTTGCTGGTTCATCTTTGGGAATTGAATTCAGCTACAACAGAGTTACAACAGGAAGAT-CCCGGATTCTG-CAGATTAGGGCTGGAAAGGCTGCTCTGTGCATGACCAAGAGAAATAGATCTAGGAAGTCGCTTGCCCGTACACATGGTTTTCGCAGACGGATGAGGACTACTGCCGGAAGAAAGGTCCTGAAGCGCAGACGCGCCAAAGGAAGAAGGGTTCTCTGCACAAAGACGAACTCCCCCACTGGGAAGAAACGAATGTTCTGATTGAATCGCATTCTAAGTCGCTCTTTGTCACAATTGTAAGTGTATTTTTTTATCCCACGTTCTCGGTTATACTCAACCATAACAATTGGTGCAAATCCTTCACCCGGTGTCCGGTTAATGTGTGAAGTACATTATCAACAC-AAATTCAAGTTAGCCTTTTTGCTTGTGCAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU088672 [CCGCCTCCGCCTCCCCCNCCGCGCTCTCTGCCGCGGTCTCGGCGTCGCTGACCTTCACCTCTGCCTCCTCATTTGCTGGTNCATCTTTGGGAATTGAATTCAGCTACANCAGAGTTACAACAGGAAGATNCCCGGATTCTGTCAGATTAGGGCTGGAAAGGCTGCTCTGTGCATGACCAAGAGAAATAGATCTAGGAAGTCGCTTGCCCGTACACATGGTTTTCGCAGACGGATGAGGACTACTGCCGGAAGAAAGGTCCTGAAGCGCAGACGCGCCAAAGGAAGAAGGGTTCTCTGCACAAAGACGAACTCCCCCACTGGGAAGAAACGAATGTTCTGATTGAATCGCATTCTAAGTCGCTCTTTGTCACAATTGTAAGTGTATTTTTTTATCCCACGTTCTCGGTTATACTCAACCATAACAATTGGTGCAAATCCTTCACCCGGTGTCCGGTTAATGTGTGAAGTACATTATCAACAC AAATTCAAGTTAGCCTTTTTGCTTGTGCAGTA ] [+] EMBL CF291564 [ TGCCGCGGTCTCGGCGTCGCTGACCTTCACCTCTGCCTCCTCATTTGCTGGTTCATCTTTGGGAATTGAATTCAGCTACAACAGAGTTACAACAGGAAGAT CCCGGATTCTG CAGATTAGGGCTGGAAAGGCTGCTCTGTGCATGACCAAGAGAAATAGATCTAGGAAGTCGCTTGCCCGTACACATGGTTTTCGCAGACGGATGAGGACTACTGCCGGAAGAAAGGTCCTGAAGCGCAGACGCGCCAAAGGAAGAAGGGTTCTCTGCACAAAGACGAACTCCCCCACTGGGAAGAAACGAATGTTCTGATTGAATCGCATTCTAAGTCGCTCTTTGTCACAATTGTAAGTGTATTTTTTTATCCCACGTTCTCGGTTATACTCAACCATAACAATTGGTGCAAATCCTTCACCCGGTGTCCGGTTAATGTGTGAAGTACATTATCAACAC AAATTCAAGTTAGCCTTTTTGCTaaaa ] [+] EMBL BF430626 [ TGCCGCGGTCTCGGCGTCGCTGACCTTCACCTCTGCCTCCTCATTTGCTGGTTCATCTTTGGGAATTGAATTCAGCTACAACAGAGTTACAACAGGAAGAT CCCGGATTCTG CAGATTAGGGCTGGAAAGGCTGCTCTGTGCATGACCAAGAGAAATAGATCTAGGAAGTCGCTTGCCCGTACACATGGTTTTCGCAGACGGATGAGGACTACTGCCGGAAGAAAGGTCCTGAAGCGCAGACGCGCCAAAGGAAGAAGGGTTCTCTGCACAAAGACGAACTCCCCCACTGGGAAGAAACGAATGTTCTGATTGAATCGCATTCTAAGTCGCTCTTTGTCACAATTGTAAGTGTATTTTTTTATCCTACGTTCTCGGTTATACTCAACCATAACAATTGGTGCAAATCCTTCACCCGGTGTCCGGTTAATGTGTGAAGTACATTATCAACAC AAATTCAAGTTAGCCTTTT ] [+] EMBL AU161804 [ TGCCGCGGTCTCGGCGTCGNTGACCTTNACCTNTGCCTCCTCATTTGCTGGTTCATCTTTGGGAATTGAATTCAGCTACAACAGAGTTACAACAGGAAGAT CCCGGATTCTG CAGATTAGGGCTGGAAAGGCTGCTCTGTGCATNACCAAGAGAAATAGATCTAGGAAGTCG ] [+] EMBL BI795725 [ CCGCGGTCTCGGCGTC CTGACCTTCACCTCTGCCTCCTCATTTGCTGGTTCATCTTTGGGAATTGAATTCAGCTACAACAGAGTTACAACAGGAAGAT CCCGGATTCTG CAGATTAGGGCTGGAAAGGCTGCTCTGTGCATGACCAAGAGAAATAGATCTAGGAA TCGCTTGCCCGTACACATGGTTTTCGCAGACGGATGAGGACTACTGCCGGAAGAAAGGTCCTGAAGCGCAGACGCGCCAAAGGAAGAAGGGTTCTCTGCACAAAGACGAACTCCCCCACTGGGAAGAAACGAATGTTCTGATTGAATCGCATTCTAAGTCGCTCTTTGTCACAATTGTAAGTGTATTTTTTTATCCCACGTTCTCGGTTATACTCAACCATAACAATTGGTGCAAATCCTTCACCCGGTGTCCGGTTAATGTGTGAAGTACATTATCAACACAAAATTCAAGTTAaaaa ] [-] EMBL CF291565 [ TTCACCTCTGCCTCCTCATTTGCTGGTTCATCTTTGGGAATTGAATTCAGCTACAACAGAGTTACAACAGGAAGAT CCCGGATTCTG CAGATTAGGGCTGGAAAGGCTGCTCTGTGCATGACCAAGAGAAATAGATCTAGGAAGTCGCTTGCCCGTACACATGGTTTTCGCAGACGGATGAGGACTACTGCCGGAAGAAAGGTCCTGAAGCGCAGACGCGCCAAAGGAAGAAGGGTTCTCTGCACAAAGACGAACTCCCCCACTGGGAAGAAACGAATGTTCTGATTGAATCGCATTCTAAGTCGCTCTTTGTCACAATTGTAAGTGTATTTTTTTATCCCACGTTCTCGGTTATACTCAACCATAACAATTGGTGCAAATCCTTCACCCGGTGTCCGGTTAATGTGTGAAGTACATTATCAACAC AAATTCAAGTTAGCCTTTTTGCT A AAAAAAAAA ] [+] EMBL CF338208 [ ATTCAGCTACAACAGAGTTACAACAGGAAGAT CCCGGATTCTG CAGATTAGGGCTGGAAAGGCTGCTCTGTGCATGACCAAGAGAAATAGATCTAGGAAGTCGCTTGCCCGTACACATGGTTTTCGCAGACGGATGAGGACTACTGCCGGAAGAAAGGTCCTGAAGCGCAGACGCGCCAAAGGAAGAAGGGTTCTCTGCACAAAGACGAACTCCCCCACTGGGAAGAAACGAATGTTCTGATTGAATCGCATTCTAAGTCGCTCTTTGTCACAATTGTAAGTGTATTTTTTTATCCCACGTTCTCGGTTATACTCAACCATAACAATTGGTGCAAATCCTTCACCCGGTGTCCGGTTAATGTGTGAAGTACATTATCAACAC AAATTCAAGTTAGCCTTTTTGCTTGTGCAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF337629 [ ATTCAGCTACAACAGAGTTACAACAGGAAGAT CCCGGATTCTG CAGATTAGGGCTGGAAAGGCTGCTCTGTGCATGACCAAGAGAAATAGATCTAGGAAGTCGCTTGCCCGTACACATGGTTTTCGCAGACGGATGAGGACTACTGCCGGAAGAAAGGTCCTGAAGCGCAGACGCGCCAAAGGAAGAAGGGTTCTCTGCACAAAGACGAACTCCCCCACTGGGAAGAAACGAATGTTCTGATTGAATCGCATTCTAAGTCGCTCTTTGTCACAATTGTAAGTGTATTTTTTTATCCCACGTTCTCGGTTATACTCAACCATAACAATTGGTGCAAATCCTTCACCCGGTGTCCGGTTAATGTGTGAAGTACATTATCAACAC AAATTCAAGTTAGCCTTTTTG ] consensusID : consensus_13172#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 425 fasta sequence [TGGCAATTGAATTCAGCTACAGCAGAGTTACAACAGTAAGATCCCGGATTTTGCAGATTTGGGCTCTAAAGGCTGCTCTGTGCATGACCAAGAGAAATAGATGTAGTAAGTCGCTTGCCCGTACACATGGTTTTCGCAGACGGATGAGTATTATTGCCGAAAGAAAGGTCCTGAAGCGCAGACGCGCCAAAGGAAGAAGGGTTCTTTGCACAAAGACGAACTCCCCCACTGGTAAGAAACGAATGTTCTGATTGAATCGCATTATAAGTCGCTCTTTGTCACAATTGTAAGTGTATTTTTTTATCCCACGTTCTCGGTTATACTCAACCATAACAATTGGTGCAAATCCTTCACCCGGTGTCCGGTTAATGTGTTAAGTACATTATCAACGCAAAAAAAAAAAAAATTAACTCTGTCATGCCCGT] [-] EMBL CF335728 [TGGCAATTGAATTCAGCTACAGCAGAGTTACAACAGTAAGATCCCGGATTTTGCAGATTTGGGCTCTAAAGGCTGCTCTGTGCATGACCAAGAGAAATAGATGTAGTAAGTCGCTTGCCCGTACACATGGTTTTCGCAGACGGATGAGTATTATTGCCGAAAGAAAGGTCCTGAAGCGCAGACGCGCCAAAGGAAGAAGGGTTCTTTGCACAAAGACGAACTCCCCCACTGGTAAGAAACGAATGTTCTGATTGAATCGCATTATAAGTCGCTCTTTGTCACAATTGTAAGTGTATTTTTTTATCCCACGTTCTCGGTTATACTCAACCATAACAATTGGTGCAAATCCTTCACCCGGTGTCCGGTTAATGTGTTAAGTACATTATCAACGCAAAAAAAAAAAAAATTAACTCTGTCATGCCCGT] consensusID : consensus_13172#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 424 fasta sequence [CCGGATTTTGCAAATTAGGGCTGGAAAGGTTGTTTTGTGCATGCCCAAAAAAAATAGATTTAGGAAGTCGCTTGCCCGTACACATGGTTTTTGCAAACGGATGAGGACTACTGCCGGAAAAAAGGTCCTTAAGGGCAAACGCGCCAAAAAAAAAAGGGTTTTTTGCCCAAAAAAGAACTCTCCCCCCTGGGAAAAAAAGAATGTTTTGATTGAATCGCATTTTAAGTCGCTTTTTGTCCCAATTGTAAGGGTATTTTTTTATCCCCCGTTTTGGGTTAAACTCAACCAAAACAATTGGGGCAAATCCTTCACCCGGGGTCCGGTTAATGTGTGAAGTACATTATCAACCCAAATTCAAGTTAGCCTTTTTGGTTGGGCAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF337628 [CCGGATTTTGCAAATTAGGGCTGGAAAGGTTGTTTTGTGCATGCCCAAAAAAAATAGATTTAGGAAGTCGCTTGCCCGTACACATGGTTTTTGCAAACGGATGAGGACTACTGCCGGAAAAAAGGTCCTTAAGGGCAAACGCGCCAAAAAAAAAAGGGTTTTTTGCCCAAAAAAGAACTCTCCCCCCTGGGAAAAAAAGAATGTTTTGATTGAATCGCATTTTAAGTCGCTTTTTGTCCCAATTGTAAGGGTATTTTTTTATCCCCCGTTTTGGGTTAAACTCAACCAAAACAATTGGGGCAAATCCTTCACCCGGGGTCCGGTTAATGTGTGAAGTACATTATCAACCCAAATTCAAGTTAGCCTTTTTGGTTGGGCAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_13172#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 331 fasta sequence [GGATTCGGCCGATGACAANNTATGAATCGCTTGCCCGTACACATGGTTTTCGCAGACGGATGAGGACTACTGCCGGAAGAAAGGTCCTGAAGCGCAGACGCGCCAAAGGAAGAAGGGTTCTCTGCACAAAGACGAACTCCCCCACTGGGAAGAAACGAATGTTCTGATTGAATCGCATTCTAAGTCGCTCTTTGTCACAATTGTAAGTGTATTTTTTTATCCTACGTTCTCGGTTATACTCAACCATAACAATTGGTGCAAATCCTTCACCCGGTGTCCGGTTAATGTGTGAAGTACATTATCAACACAAATTCAAGTTAGCCTTTTTGCT] [+] EMBL AA752993 [GGATTCGGCCGATGACAANNTATGAATCGCTTGCCCGTACACATGGTTTTCGCAGACGGATGAGGACTACTGCCGGAAGAAAGGTCCTGAAGCGCAGACGCGCCAAAGGAAGAAGGGTTCTCTGCACAAAGACGAACTCCCCCACTGGGAAGAAACGAATGTTCTGATTGAATCGCATTCTAAGTCGCTCTTTGTCACAATTGTAAGTGTATTTTTTTATCCTACGTTCTCGGTTATACTCAACCATAACAATTGGTGCAAATCCTTCACCCGGTGTCCGGTTAATGTGTGAAGTACATTATCAACACAAATTCAAGTTAGCCTTTTTGCT] consensusID : consensus_13172#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 220 fasta sequence [CTGACATGGCTGAGGAGTAGAAAGCATTCTAAGTCGCTCTTTGTCACAATTGTAAGTGTATTTTTTTATCCCACGTTCTCGGTTATACTCAACCATAACAATTGGTGCAAATCCTTCACCCGGTGTCCGGTTAATGTGTGAAGTACATTATCAACACAAATTCAAGTTAGCCTTTTTGCTTGTGCTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF308002 [CTGACATGGCTGAGGAGTAGAAAGCATTCTAAGTCGCTCTTTGTCACAATTGTAAGTGTATTTTTTTATCCCACGTTCTCGGTTATACTCAACCATAACAATTGGTGCAAATCCTTCACCCGGTGTCCGGTTAATGTGTGAAGTACATTATCAACACAAATTCAAGTTAGCCTTTTTGCTTGTGCTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13172#1 ------------------------------------------------------------ consensus_13172#3 ------------------------------------------------------------ consensus_13172#0 CCGCCTCCGCCTCCCCCNCCGCGCTCTCTGCCGCGGTCTCGGCGTCGCTGACCTTCACCT 60 consensus_13172#2 ------------------------------------------------------------ consensus_13172#4 ------------------------------------------------------------ consensus_13172#1 ---------------------------TGGCAATTGAATTCAGCTACAGCAGAGTTACAA 33 consensus_13172#3 ------------------------------------------------------------ consensus_13172#0 CTGCCTCCTCATTTGCTGGTTCATCTTTGGGAATTGAATTCAGCTACAACAGAGTTACAA 120 consensus_13172#2 ------------------------------------------------------------ consensus_13172#4 ------------------------------------------------------------ consensus_13172#1 CAGTAAGATCCCGGATTTTGCAGATTTGGGCTCTAAAGGCTGCTCTGTGCATGACCAAGA 93 consensus_13172#3 ----------------------------------------------GGATTCGGCCGATG 14 consensus_13172#0 CAGGAAGATCCCGGATTCTGCAGATTAGGGCTGGAAAGGCTGCTCTGTGCATGACCAAGA 180 consensus_13172#2 ----------CCGGATTTTGCAAATTAGGGCTGGAAAGGTTGTTTTGTGCATGCCCAAAA 50 consensus_13172#4 ------------------------------------------------------------ consensus_13172#1 GAAATAGATGTAGTAAGTCGCTTGCCCGTACACATGGTTTTCGCAGACGGATGAGTATTA 153 consensus_13172#3 ACAANNTATG-----AATCGCTTGCCCGTACACATGGTTTTCGCAGACGGATGAGGACTA 69 consensus_13172#0 GAAATAGATCTAGGAAGTCGCTTGCCCGTACACATGGTTTTCGCAGACGGATGAGGACTA 240 consensus_13172#2 AAAATAGATTTAGGAAGTCGCTTGCCCGTACACATGGTTTTTGCAAACGGATGAGGACTA 110 consensus_13172#4 ------------------------------------------------------------ consensus_13172#1 TTGCCGAAAGAAAGGTCCTGAAGCGCAGACGCGCCAAAGGAAGAAGGGTTCTTTGCACAA 213 consensus_13172#3 CTGCCGGAAGAAAGGTCCTGAAGCGCAGACGCGCCAAAGGAAGAAGGGTTCTCTGCACAA 129 consensus_13172#0 CTGCCGGAAGAAAGGTCCTGAAGCGCAGACGCGCCAAAGGAAGAAGGGTTCTCTGCACAA 300 consensus_13172#2 CTGCCGGAAAAAAGGTCCTTAAGGGCAAACGCGCCAAAAAAAAAAGGGTTTTTTGCCCAA 170 consensus_13172#4 ------------------------------------------------------------ consensus_13172#1 AGACGAACTC-CCCCACTGGTAAGAAACGAATGTTCTGATTGAATCGCATTATAAGTCGC 272 consensus_13172#3 AGACGAACTC-CCCCACTGGGAAGAAACGAATGTTCTGATTGAATCGCATTCTAAGTCGC 188 consensus_13172#0 AGACGAACTC-CCCCACTGGGAAGAAACGAATGTTCTGATTGAATCGCATTCTAAGTCGC 359 consensus_13172#2 AAAAGAACTCTCCCCCCTGGGAAAAAAAGAATGTTTTGATTGAATCGCATTTTAAGTCGC 230 consensus_13172#4 ---------------------CTGACATGGCTGAG--GAGTAGAAAGCATTCTAAGTCGC 37 * * * ** ** * * ***** ******** consensus_13172#1 TCTTTGTCACAATTGTAAGTGTATTTTTTTATCCCACGTTCTCGGTTATACTCAACCATA 332 consensus_13172#3 TCTTTGTCACAATTGTAAGTGTATTTTTTTATCCTACGTTCTCGGTTATACTCAACCATA 248 consensus_13172#0 TCTTTGTCACAATTGTAAGTGTATTTTTTTATCCCACGTTCTCGGTTATACTCAACCATA 419 consensus_13172#2 TTTTTGTCCCAATTGTAAGGGTATTTTTTTATCCCCCGTTTTGGGTTAAACTCAACCAAA 290 consensus_13172#4 TCTTTGTCACAATTGTAAGTGTATTTTTTTATCCCACGTTCTCGGTTATACTCAACCATA 97 * ****** ********** ************** **** * ***** ********* * consensus_13172#1 ACAATTGGTGCAAATCCTTCACCCGGTGTCCGGTTAATGTGTTAAGTACATTATCAACGC 392 consensus_13172#3 ACAATTGGTGCAAATCCTTCACCCGGTGTCCGGTTAATGTGTGAAGTACATTATCAACAC 308 consensus_13172#0 ACAATTGGTGCAAATCCTTCACCCGGTGTCCGGTTAATGTGTGAAGTACATTATCAACAC 479 consensus_13172#2 ACAATTGGGGCAAATCCTTCACCCGGGGTCCGGTTAATGTGTGAAGTACATTATCAACCC 350 consensus_13172#4 ACAATTGGTGCAAATCCTTCACCCGGTGTCCGGTTAATGTGTGAAGTACATTATCAACAC 157 ******** ***************** *************** *************** * consensus_13172#1 AAAAAAAAAAAAAATTAACTCTGTCATGCCCGT--------------------------- 425 consensus_13172#3 AAATTCAAGTTAGCCT--TTTTGCT----------------------------------- 331 consensus_13172#0 AAATTCAAGTTAGCCT--TTTTGCTTGTGCAGTAAAAAAAAAAAAAAAAAAAAAAAAAAA 537 consensus_13172#2 AAATTCAAGTTAGCCT--TTTTGGTTGGGCAGTAAAAAAAAAAAAAAAAAAAAAAAAAAA 408 consensus_13172#4 AAATTCAAGTTAGCCT--TTTTGCTTGTGCTTTTTAAAAAAAAAAAAAAAAAAAAAAAAA 215 *** ** * * * ** consensus_13172#1 ---------------- consensus_13172#3 ---------------- consensus_13172#0 AAAAAAAAAAAAAAA- 552 consensus_13172#2 AAAAAAAAAAAAAAAA 424 consensus_13172#4 AAAAA----------- 220 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||