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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13209#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 841 fasta sequence
[CTCCCTCAAGGCCATCGTCGAGCACATTACACAGGAGTGGCCACGGTCGTCTACTACGCTTTCTACTTAGCTCACATGGTTGAAGTAACGACACTGATGAACTTGCTCATGCACTCTCTTGAGAGCAAAAATCTACATTAAGAGAACCAACCTGCCGTTAGATATGATGGAGTCGAGGTACGTCAAGGTGGATTCGCGCTTCTTCCTCGTCGACGACAACTCCTCCTCCTCCTCCTCCTCCTGCGCCGCCGCCGGCGG-GNT-GGC-GG-CGACGGCGATTACCACTACCTCGACGCCTGCTTCCTCTGCAAGCGGGACATCACCTTCAACCGCCACA-TCTT-CATGTACAAGGGGAACGCGGCGTTCTGCAGCGACGACTGCAGGCAGGACCAGATGGACATGGACTCCGCGCTCG-CCGCCG-TCAAGCGCCGCCACCGCACGCTGCAACGCAGCA-G-G-GACATGTCGTCC-TCCTCCTCGCCGGC-GCCGGCTGCGGCACAGTGCGCCGCCAACGAGGCGGGCCTCTTCGCGGTGATCCCCCGCCGCCCCACCGTCGCTGACCTCACCACCCACGCTGCTCCCGCCGTGTCTGGCACTGTGTGATCGATCGACGAGCGGTGGTTTGTCTCTGAATGTTTTTGCCATCTTCCAAGATGGTTCATCGTTGTGCTCAGCTGCTATTAG-CCCATGTCAAGAATCAAGATGCATGAGGTGAAGACGATGAGGCCATGCGAACACTAGTCTATCTATATATAGTATAGTAGTAATCTCCTGGTTATGGAGAGAGAAAGGTGTTGAAATTAAGNGAAATCAATCGNGATCATGATGATATTNGNTTCCAAAAAAA]
[+] EMBL AK102200 [CTCCCTCAAGGCCATCGTCGAGCACATTACACAGGAGTGGCCACGGTCGTCTACTACGCTTTCTACTTAGCTCACATGGTTGAAGTAACGACACTGATGAACTTGCTCATGCACTCTCTTGAGAGCAAAAATCTACATTAAGAGAACCAACCTGCCGTTAGATATGATGGAGTCGAGGTACGTCAAGGTGGATTCGCGCTTCTTCCTCGTCGACGACAACTCCTCCTCCTCCTCCTCCTCCTGCGCCGCCGCCGGCGGCGGT GGC GG CGACGGCGATTACCACTACCTCGACGCCTGCTTCCTCTGCAAGCGGGACATCACCTTCAACCGCCACA TCTT CATGTACAAGGGGAACGCGGCGTTCTGCAGCGACGACTGCAGGCAGGACCAGATGGACATGGACTCCGCGCTCG CCGCCG TCAAGCGCCGCCACCGCACGCTGCAACGCAGCA G G GACATGTCGTCC TCCTCCTCGCCGGC GCCGGCTGCGGCACAGTGCGCCGCCAACGAGGCGGGCCTCTTCGCGGTGATCCCCCGCCGCCCCACCGTCGCTGACCTCACCACCCACGCTGCTCCCGCCGTGTCTGGCACTGTGTGATCGATCGACGAGCGGTGGTTTGTCTCTGAATGTTTTTGCCATCTTCCAAGATGGTTCATCGTTGTGCTCAGCTGCTATTAG CCCATGTCAAGAATCAAGATGCATGAGGTGAAGACGATGAGGCCATGCGAACACTAGTCTATCTATATATAGTATAGTAGTAATCTCCTGGTTATGGAGA ]
[+] EMBL AU082133 [ CGTCGAGCACATTACACAGGAGTGGCCACGGTCGTCTACTACGCTTTCTACTTAGCTCACATGGTTGAAGTAACGACACTGATGAACTTGCTCATGCACTCTCTTGAGAGCAAAAATCTACATTAAGAGAACCAACCTGCCGTTAGATATGATGGAGTCGAGGTACGTCAAGGTGGATTCGNGCTTCTTCCTCGTCGACGACAACTCCTCCTCCTCCTCCTCCTCCTGGGCCGCCGCC GCGG GNTGGGCGGG CGACGGCGATTACCACTACCTCGACGNCTGCTTCCTCTGCAANCGGGACATCANCTTCAACCGNCACA TCTT CATGTACAAG ]
[+] EMBL C26056 [ CGTCGAGCACATTACACAGGAGTGGCCACGGTCGTCTACTACGCTTTCTACTTAGCTCACATGGTTGAAGTAACGACACTGATGAACTTGCTCATGCACTCTCTTGAGAGCAAAAATCTACATTAAGAGAACCAACCTGCCGTTAGATATGATGGAGTCGAGGTACGTCAAGGTGGATTCGCGCTTCTTCCTCGTCGACGACAACTCCTCCTCCTCCTCCTCCTCCTGCGCCGCCGCCGGCGG GTT GGCGGG CGACGGCGATTACCACTACCTCGACGCCTGCTTCCTCTGCAAGCGGGACATCACCTTCAACCGCCACA TCTT CATGTA ]
[+] EMBL AU082137 [ CGAGCACATNACACAGGAGTNGCCACGGTCGTCTACNACGCTTTCTACTTAGCTCACATGGTTGAAGTAACGACACTNATGAACTTGCTCATGCACTCTCTTGAGAGCAAAAATCTACATNAAGAGAACCAACCNGCCGTTAGATATGATGGAGTCGAGGTACGTCAAGGTGGATTCGCGCTTCTNCCTCGTCGACGACAACNCCTCCTCCTCCTCCTCCNCCNGCGCCGCCGCCGGCGN GNTNGGC GG CGACGGCGATTACCACNACCTCGACGCCTGCTTCCTCTGCAAGCGGGACATCACCTTCAACCGCCACA TCTT CATGTACAAGGGGAACGCGGCGTTCTGCAGCGACGACNGCAGGCAGGACCAGATGGACATGGACTCCGCGCTCG CCGCCG TCAAGCGCCGCCAC ]
[+] EMBL C26500 [ GTGGCCACGGTCGTCTACTACGCTTTCTACTTAGCTCACATGGTTGAAGTAACGACACTGATGAACTTGCTCATGCACTCTCTTGAGAGCAAAAATCTACATTAAGAGAACCAACCTGCCGTTAGATATGATGGAGTCGAGGTACGTCAAGGTGGATTCGCGCTTCTTCCTCGTCGACGACAACTCCTCCTCCTCCTCCTCCTCCTGNGCCGCCGCCGG GG GNTNGGC GGACGACGGCGATTACCACTACCTCGACGCCTGCTTCCTCTGCAAGCGGGACATCACCTTCAACCGCCACA TCTT CATGTACAAGGGGAACGCGGCGTTCTGCAGCGACGACTGCAGGCAGGACCAGATGGACATGGACTCCGCGCTCG CCGCCGTTCAAGCGCCGCCACCGCACGCTGCAACGCA CAGG G GACATGTCGTCCTTCCTCCTCGNCGGCGGCCGGtt ]
[+] EMBL AU082134 [ GGA ATCACNTTAAACCGCCACATTCTTNCATGTACAAGGGGAACGCGGCGTTCTGCAGCGACGA TGCAGGCAGGACCAGATGGACATGGACTCCGCGNTCGCCCGCNG TCAAGCGCCGCCACCGCACG TGCAACGCAGCA G G GACATGTCGTCC TCCTCCTCGCCGGC GCCGGCTGCGGCACAGTGCGCCGCCAACGAGGCGGGCCTCTTCGCGGTGATCCCCCGCCGCCCCACCGTCGCTGACCTCACCACCCACGCTGCTCCCGCCGTGTCTGGCACTGTGTGATCGATCGACGAGCGGTGGTTTGTCTCTGAATGTTTTTGCCATCTTCCAAGATGGTTCATCGTTGTGCTCAGCTGCTATTAG CCCATGTCAAGAATCAAGATGCATGAGGTGAAGACGATGAGGCCATGCGAACACTAGTCTATCTATATATAGTATAGTAGTAATCTCCTGGTTATGGAGA ]
[+] EMBL AU082131 [ CGCCACA TNTT CATGTACAAGGGGAACGCGGCGTTNTGCAGCGACGANTGCAGGCAGGACCAGATGGACATGGACTCCGCGNTCG CCGCCG TNAAGCGCCGCCACCGCACG TGCAACGCAGCA G G GACATGTCGTCC TCCTCCTCGCCGGC GCCGGCTGCGGCACAGTGCGCCGCCAACGAGGCGGGCCTCTTCGCGGTGATCCCCCGCCGCCCCACCGTCGCTGACCTCACCACCCACGCTGCTCCCGCCGTGTCTGGCACTGTGTGATCGATCGACGAGCGGTGGTTTGTCTCTGAATGTTTTTGCCATCTTCCAAGATGGTTCATCGTTGTGCTCAGCTGCTATTAG CCCATGTCAAGAATCAAGATGCATGAGGTGAAGACGATGAGGCCATGCGAACACTAGTCTATCTATATATAGTATAGTAGTAATCTCCTGGTTATGGAGA ]
[+] EMBL C28787 [ cgT CATGTACAAGGGGNACGCGGCGTTCTGCAGCNACGACTGCAGGCAGGACCAGATGGACATGGACTCCGCGCTCG CCG CG TCAAGCGCCGCCACCGCACGCTGCAACGCAGNG N G NACATGTCGTCC TCCTCCTCGCCGGC GCC GCTGCGG ACAGTGCGCCG CAACGAG GGGCCTCTTCGCGGTGATCCCCCGCCGCCCCACCGTCGCTGACCTCACCACCCACGCTGCTCCCGCCGTGTCTGGCACTGTGTGATCGATCGACGAGCGGTGGTTTGTCTCTGAATGTTTTTGCCATCTTCCAAGATGGTTCATCGTTGTGCTCAGCTGCTATTAG CCNATGTCAAGAATCAAGATGCATGAGGTGAAGACGATGAGGCCATGCGAACACTAGTCTATCTATATATAGTATAGTAG ]
[+] EMBL OS0565A [ agGGGGAACGCGGCGTTCTGCAGCGACGACTGCAGGCAGGACCAGATGGACATGGACTCCGCGCTCG CCGCCG TCAAGCGCCGCCACCGCACGCTGCAACGCA NA GNGNGACATGTCGTCC TCCTCCTCGCCGGC GCCGGCTGCGGCACAGTGCGCCGCCAACGAGGCGGGCCTCTTCGCGGTGATCCCCCGCCGCCCCACCGTCGCTGACCTCACCACCCACGCTGCTCCCGCCGTGTCTGGCACTGTGTGATCGATCGACGAGCGGTGGTTTGTCTCTGAATGTTTTTGCCATCTTCCAAGATGGTTCATCGTTGTGCTCAGCTGCTATTAG CCCATGTCAAGAATCAAGATGCATGAGGTGAAGACGATGAGG CATGCGAA ]
[+] EMBL C98208 [ CGGC GCCGGCTGCGGCACAGTGCGCCGCCAACGAGGCGGGCCTCTTCGCGGTGATCCCCCGCCGCCCCACCGTCGCTGACCTCACCACCCACGCTGCTCCCGCCGTGTCTGGCACTGTGTGATCGATCGACGAGCGGTGGTTTGTCTCTGAATGTTTTTGCCATCTTCCAAGATGGTTCATCGTTGTGCTCAGCTGCTATTAG CCCATGTCAAGAATCAAGATGCATGNNGTGAAGACGATGAGGCCATGCGAACACTAGTCTATCTATATATAGTATAGTNGTAATCTCCTGGTTATGGNGAGAGAAAGGTGTTGAAATTAAGNGAAATCAATCGNGATCATGATGATATTNGNTTCCAAAAAAA]
[+] EMBL AU172342 [ TGCTCCCGCCGTGTCTGGCACTGTGTGATCGATCGACGAGCGGTGGTTTGTCTCTGAATGTTTTTGCCATCTTCCAAGATGGTTCATCGTTGTGCTCAGCTGCTATTAGCCCCATGTCAAGAATCAAGATGCATGAGGTGAAGACGATGAGGCCATGCGAACACTAGTCTATCTATATATAGTATAGTAGTAATCTCCTGGTTATGGAGA ]
consensusID : consensus_13209#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 357 fasta sequence
[CACGACTGCACGCACGACCACATGGACATGGACTCCGCGCTCGCCGCCGTCAAGCGCCGCCACCGCACGCTGCAACGCAGCAGGGACATGTCGTCCTCCTCCTCGCCGGCGCCGGCTGCGGCACAGTGCGCCGCCAACGAGGCGGGCCTCTTCGCGGTGATCCCCCGCCGCCCCACCGTCGCTGACCTCACCACCCACGCTGCTCCCGCCGTGTCTGGCACTGTGTGATCGATCACAACGGTGGTTTGTCTCTGAATGTTTTTTGCCATCTTCCAAGATGGTTCATCGTTGTTCCTCACCTTGCTATTAACCCCTTTTCAAAATCAAAAATCCTCGGTTTAAAAAAAAAATAACCCT]
[+] EMBL AA754083 [CACGACTGCACGCACGACCACATGGACATGGACTCCGCGCTCGCCGCCGTCAAGCGCCGCCACCGCACGCTGCAACGCAGCAGGGACATGTCGTCCTCCTCCTCGCCGGCGCCGGCTGCGGCACAGTGCGCCGCCAACGAGGCGGGCCTCTTCGCGGTGATCCCCCGCCGCCCCACCGTCGCTGACCTCACCACCCACGCTGCTCCCGCCGTGTCTGGCACTGTGTGATCGATCACAACGGTGGTTTGTCTCTGAATGTTTTTTGCCATCTTCCAAGATGGTTCATCGTTGTTCCTCACCTTGCTATTAACCCCTTTTCAAAATCAAAAATCCTCGGTTTAAAAAAAAAATAACCCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13209#0 CTCCCTCAAGGCCATCGTCGAGCACATTACACAGGAGTGGCCACGGTCGTCTACTACGCT 60
consensus_13209#1 ------------------------------------------------------------
consensus_13209#0 TTCTACTTAGCTCACATGGTTGAAGTAACGACACTGATGAACTTGCTCATGCACTCTCTT 120
consensus_13209#1 ------------------------------------------------------------
consensus_13209#0 GAGAGCAAAAATCTACATTAAGAGAACCAACCTGCCGTTAGATATGATGGAGTCGAGGTA 180
consensus_13209#1 ------------------------------------------------------------
consensus_13209#0 CGTCAAGGTGGATTCGCGCTTCTTCCTCGTCGACGACAACTCCTCCTCCTCCTCCTCCTC 240
consensus_13209#1 ------------------------------------------------------------
consensus_13209#0 CTGCGCCGCCGCCGGCGGGNTGGCGGCGACGGCGATTACCACTACCTCGACGCCTGCTTC 300
consensus_13209#1 ------------------------------------------------------------
consensus_13209#0 CTCTGCAAGCGGGACATCACCTTCAACCGCCACATCTTCATGTACAAGGGGAACGCGGCG 360
consensus_13209#1 ------------------------------------------------------------
consensus_13209#0 TTCTGCAGCGACGACTGCAGGCAGGACCAGATGGACATGGACTCCGCGCTCGCCGCCGTC 420
consensus_13209#1 ---------CACGACTGCACGCACGACCACATGGACATGGACTCCGCGCTCGCCGCCGTC 51
********* *** ***** ******************************
consensus_13209#0 AAGCGCCGCCACCGCACGCTGCAACGCAGCAGGGACATGTCGTCCTCCTCCTCGCCGGCG 480
consensus_13209#1 AAGCGCCGCCACCGCACGCTGCAACGCAGCAGGGACATGTCGTCCTCCTCCTCGCCGGCG 111
************************************************************
consensus_13209#0 CCGGCTGCGGCACAGTGCGCCGCCAACGAGGCGGGCCTCTTCGCGGTGATCCCCCGCCGC 540
consensus_13209#1 CCGGCTGCGGCACAGTGCGCCGCCAACGAGGCGGGCCTCTTCGCGGTGATCCCCCGCCGC 171
************************************************************
consensus_13209#0 CCCACCGTCGCTGACCTCACCACCCACGCTGCTCCCGCCGTGTCTGGCACTGTGTGATCG 600
consensus_13209#1 CCCACCGTCGCTGACCTCACCACCCACGCTGCTCCCGCCGTGTCTGGCACTGTGTGATCG 231
************************************************************
consensus_13209#0 ATCGACGAGCGGTGGTTTGTCTCTGAATGTTTTT-GCCATCTTCCAAGATGGTTCATCGT 659
consensus_13209#1 ATCA--CAACGGTGGTTTGTCTCTGAATGTTTTTTGCCATCTTCCAAGATGGTTCATCGT 289
*** * ************************* *************************
consensus_13209#0 TGTGCTCAGC--TGCTATTAGCCCATGTCAAGAATCAAGATGCATGAGGTGAAGACGATG 717
consensus_13209#1 TGTTCCTCACCTTGCTATTAACCCCTTTTCAAAATCAAAAATCCTCGGTTTAAAAAAAAA 349
*** * * ******** *** * * * ****** * * * * * ** * *
consensus_13209#0 A-GGCCATGCGAACACTAGTCTATCTATATATAGTATAGTAGTAATCTCCTGGTTATGGA 776
consensus_13209#1 ATAACCCT---------------------------------------------------- 357
* ** *
consensus_13209#0 GAGAGAAAGGTGTTGAAATTAAGNGAAATCAATCGNGATCATGATGATATTNGNTTCCAA 836
consensus_13209#1 ------------------------------------------------------------
consensus_13209#0 AAAAA 841
consensus_13209#1 -----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||