These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13211#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 3385 fasta sequence [AACAAACCACAACGAACTACCCCCTCCTCGTCGAGCCGACGCGAGAGAGGAAAGTGGGTTGCGGNTTGCTGCGCGTGTGGAGTCGCCATTCCCCAATTCGCTGCGCCGCCCGCCGGATCTCGTCTTGCCCCCTGCGGCGGCGGTTTGGGCCCCCCCTTCCGATCGGTTTCCCCCCCGCACATGGTCGTGGCGGCGGCGGAGGTGGTGGTGGTGCGGGAGTAGGGAGGCGGGCGAACCGAGGCGGCGGCGCCGATGGCGGACCTGGTTTCCAGCTGCAAGGATAAACTGGCATACTTTAGAATAAAGGAACTCAAAGATATATTAAATCAGCTCGGCTTACCAAAGCAAGGAAAGAAGCAGGATCTTATTGATAGGGTGTTGGCACTCTTAACAGATGAGCAAGGTCAAAGGCATCATGGATGGGGAAGGAAAAATTCTCTCACCAAGGAGGCAGTGGCAAAAATTGTTGATGATACATA---CAGGAAAATGCAAATCCAATGTGCTCCTGATCTAGCCACCAGGAGCCACAGCGGATCAGATTTCAGTTTCAGGCCTATAGAGGAAGCCTATGACTCTTTCCAGCCAGAGGCCAAAGTTCGCTGCATTTGCAGTAGCACAATGGTTAATGACAGCATGATCCAGTGTGAAGATCAGCGATGCCAAGTGTGGCAACATTTGAATTGTGTACTCATTCCAGATAAGCCTGGGGAGAGCGCTGAAGTTCCACCCGTTTTCTACTGTGAATTATGCCGACTGAGTCGGGCAGACCCATTTTGGGTCACTGCTGGAAATCCATTACTCCCAGTGAAATTCGTGTCATCTGGTGTTACAAATGATGGAACAAGTGTACCTCAAAGTGTGGAGAAAAGCTTCCAGCTTTCTCGATCAGATAGAGAAACTGTCCAGAGACAAGAATATGACCTCCAGGTTTGGTGCATGCTTTTGAATGACAAAGTTCAGTTCAGGATGCAGTGGCCCCAATATGCAGAATTGCATGTTAATGGTATTTCTGTACGAGTAGTGACTAGACCTGGTTCTCAATTACTAGGGATAAATGGACGGGATGATGGTCCACTGATAACCACATGCAGTAGAGAGGGAATTAATAAAATTTGCTTATCAAGGGTCGATGCTCGGACATTTTGCTTTGGTGTTCGAATTGCTAAACGGAGGACTGTTGCTCAGGTTTTGAACTTAGTTCCAAAGGAAGCTGAAGGAGAGTCTTTTGAGCATGCTCTTGCTCGTGTTCGGCGCTGTCTCGGAGGTGGAGACACTGCAGAGAATGCTGATAGTGACAGTGATTTGGAAGTGGTTGCGGAGTCTGTTACAGTCAACCTTCGTTGCCCTAATAGTGGATCCAGAATGAGGATTGCTGGGAGATTCAAGCCTTGCATTCACATGGGTTGTTTTGATCTTGAAACTTTCGTGGAATTGAATCAACGGTCCCGCAAGTGGCAATGTCCAATATGTTTAAAGAATTACTCTCTTGAGAGCTTGATGATTGATCCTTACTTCAATAGGATTACTTCTCTGTTGCGCAATTGCAATGAGGATGTCAATGAGGTTGATGTTAAGCCTGACGGATCTTGGCGTGTGAAGGGTGATGCTGCAAGTAGAGAATTATCTCAGTGGCATATGCCTGATGGTACCCTTTGTAATCCTAAGGAAGATGTCAAACCTGCCATGCAAAATGGAAATGAACAAATGATGGAAGGTACTTCTGATGGACAGAAATCTTTGAAAATTGGAATAAAGAGAAATCCAAATGGAATCTGGGAAGTTAGTAGCAAAGCAGATGACAAGAAGCCTTCTGTGGTTGGAAATCGCATGCAAAACAATAGTGGGTTCCGAGCTCTAAACAACATTATGCATATGAGCAATAGCCCAACTAGTAGTTATAGAGACGGGGAAGACCCAAGTGTGAACCAAGAGAGCAATAGGCATGTTGACTTATCATTGAACAATGGTAATAATGAGTTTGACAGTTTCTCTCTCAATTTTGGCCAAGCATGCAATACAGATGATAGACCACAGCAACAACATAATGCCACAGACGTCATTGTTCTTAGTGATTCTGATGAAGAGAATGATGCTATGGTTTGTCCACCAGCTGTCTATGACAATACTACCACTGCAAATGGTAGTGGTTTTCCTTTCACCACTAATGGTATTGGATATACTGAAAGGTACCAGGAAGATGCCGGCGTTGGTACAAGTGGCCTTGGTTTATTGAGTAACAATGTTGATGATTTTGAGATGAATAACTGGCAAATGCATTCTTCTTATCAACAACCTGAACAAGGCTTCCAGTTTTTTGGGAATGATACTGATGTCCATAATACTTTTGTTGGTTCACACAATTCCTTTGGCTTAGCACCAAATGACTATTCTCTTGATTGTAATGTTGGCGTAGAGGAGGCTTCGGTAACTCCTGCTCTTTCAGTCTGCCGGAATAGTAATGAAATGCATGGAAGTTTGGTTGATAACCCACTGGCTTTGGTTGGCGATGATCCATCCTTGCAAATTTTTCTTCCAAGTCAACCTTCCTCTGTTCCTCTTCAGGAAGAACTTAGCGAGCGTGCTAATGCACCAAATGGGGTTCAGTCTGATGATTGGATATCCCTTACACTCGCAGCGGGTGGAGGTGGTAACGAAGAGCCTGCACCTGCTGATGTCAATTCACAGCCACAAATTCCATCAACAGAGACAGGGATCGAACCATTGACCGATGCTGCTTCTGCATTTCTGAGCACAAACATTGAAAGACGTAGCGGAGCTGAT-TTAAATCCAAGAAGGATAGAAAATATATTTTCTCATCCTCGCCAGCCTCGGTCTGTTAGGCCTCGACTCTGTTTATC-AATAGATACTGATTCTGAGTAGTTTGGACATCATAACGGGGTAACTGAGTTTGCATTAGTTTGGCAAAGCTGCCATCC-AGAAATCATGATTTATACTGAGGTGGGGTTATC-GGTCGTCTGGTTGATGTAAAGAAAAACACCA-GCA-TTGATGCTTTGTTGCCTCAATGGTTTACAAGCTTTCAAGTGTTCTA-TTTGAT-CCA-GGAGGGATCTGCATAGAGGACATCTGAT-GGTTGGTATAGAAAATTTTCTAACT-GGGTATCGAGGCTTAATGTGGCGACTGGAGCAG-TTTGTACATTTTTTTTGTTTTGACTTTTACTGGATATAAGGAATAG-AGGTGG-GGTCAT-CCCTGGA-CCCTGGATGCAAGAC-AAATACATGTGAATGTTTTGTGTGTACCATCATTGTATTTAGGGTTTGGGGGTACTAATTTAGTTGTTTATTAACCTGGTATTTGATGGAGAATAAATTATTCCTGGAAGTGGCGGCCAATAAACA-GAGTCGTTGGGGTTTTACTTGGGTAAAAAAAAAAA] [+] EMBL AU172477 [AACAAACCACAACGAACTACCCCCTCCTCGTCGAGCCGACGCGAGAGAGGAAAGTGGGTTGCGGNTTGCTGCGCGTGTGGAGTCGCCATTCCCCAATTCGNTGCGCCGCCCGCCGGATCTCGTCTTGCCCCCTGCGGCGGCGGTTTGGGCCCCCCCTTCCGATCGGTTTCCCCCCCGCACATGGTCGTGGCGGCGGCGGAGGTGGTGGTGGTGCGGGAGTAGGGAGGCGGNCGAACCGAGGCGGCGGCGCCGATGGCGGACCTGGTTTCCAGCTGCAAGGATAAACTGGCATACTTTAGAATAAAGGAACTCAAAGATATATTAAATCAGCTCGGCTTACCAAAGCAAGGAAAGAAGCAGGATCTTATTGATAGGGTGTTGGCACTCTTAACAGATGAGCAAGGTCAAAGGCATCATGGATGGGGAAG ] [+] EMBL AK105290 [ ACGAACTACCCCCTCCTCGTCGAGCCGACGCGAGAGAGGAAAGTGGGTTGCGGCTTGCTGCGCGTGTGGAGTCGCCATTCCCCAATTCGCTGCGCCGCCCGCCGGATCTCGTCTTGCCCCCTGCGGCGGCGGTTTGGGCCCCCCCTTCCGATCGGTTTCCCCCCCGCACATGGTCGTGGCGGCGGCGGAGGTGGTGGTGGTGCGGGAGTAGGGAGGCGGGCGAACCGAGGCGGCGGCGCCGATGGCGGACCTGGTTTCCAGCTGCAAGGATAAACTGGCATACTTTAGAATAAAGGAACTCAAAGATATATTAAATCAGCTCGGCTTACCAAAGCAAGGAAAGAAGCAGGATCTTATTGATAGGGTGTTGGCACTCTTAACAGATGAGCAAGGTCAAAGGCATCATGGATGGGGAAGGAAAAATTCTCTCACCAAGGAGGCAGTGGCAAAAATTGTTGATGATACATA CAGGAAAATGCAAATCCAATGTGCTCCTGATCTAGCCACCAGGAGCCACAGCGGATCAGATTTCAGTTTCAGGCCTATAGAGGAAGCCTATGACTCTTTCCAGCCAGAGGCCAAAGTTCGCTGCATTTGCAGTAGCACAATGGTTAATGACAGCATGATCCAGTGTGAAGATCAGCGATGCCAAGTGTGGCAACATTTGAATTGTGTACTCATTCCAGATAAGCCTGGGGAGAGCGCTGAAGTTCCACCCGTTTTCTACTGTGAATTATGCCGACTGAGTCGGGCAGACCCATTTTGGGTCACTGCTGGAAATCCATTACTCCCAGTGAAATTCGTGTCATCTGGTGTTACAAATGATGGAACAAGTGTACCTCAAAGTGTGGAGAAAAGCTTCCAGCTTTCTCGATCAGATAGAGAAACTGTCCAGAGACAAGAATATGACCTCCAGGTTTGGTGCATGCTTTTGAATGACAAAGTTCAGTTCAGGATGCAGTGGCCCCAATATGCAGAATTGCATGTTAATGGTATTTCTGTACGAGTAGTGACTAGACCTGGTTCTCAATTACTAGGGATAAATGGACGGGATGATGGTCCACTGATAACCACATGCAGTAGAGAGGGAATTAATAAAATTTGCTTATCAAGGGTCGATGCTCGGACATTTTGCTTTGGTGTTCGAATTGCTAAACGGAGGACTGTTGCTCAGGTTTTGAACTTAGTTCCAAAGGAAGCTGAAGGAGAGTCTTTTGAGCATGCTCTTGCTCGTGTTCGGCGCTGTCTCGGAGGTGGAGACACTGCAGAGAATGCTGATAGTGACAGTGATTTGGAAGTGGTTGCGGAGTCTGTTACAGTCAACCTTCGTTGCCCTAATAGTGGATCCAGAATGAGGATTGCTGGGAGATTCAAGCCTTGCATTCACATGGGTTGTTTTGATCTTGAAACTTTCGTGGAATTGAATCAACGGTCCCGCAAGTGGCAATGTCCAATATGTTTAAAGAATTACTCTCTTGAGAGCTTGATGATTGATCCTTACTTCAATAGGATTACTTCTCTGTTGCGCAATTGCAATGAGGATGTCAATGAGGTTGATGTTAAGCCTGACGGATCTTGGCGTGTGAAGGGTGATGCTGCAAGTAGAGAATTATCTCAGTGGCATATGCCTGATGGTACCCTTTGTAATCCTAAGGAAGATGTCAAACCTGCCATGCAAAATGGAAATGAACAAATGATGGAAGGTACTTCTGATGGACAGAAATCTTTGAAAATTGGAATAAAGAGAAATCCAAATGGAATCTGGGAAGTTAGTAGCAAAGCAGATGACAAGAAGCCTTCTGTGGTTGGAAATCGCATGCAAAACAATAGTGGGTTCCGAGCTCTAAACAACATTATGCATATGAGCAATAGCCCAACTAGTAGTTATAGAGACGGGGAAGACCCAAGTGTGAACCAAGAGAGCAATAGGCATGTTGACTTATCATTGAACAATGGTAATAATGAGTTTGACAGTTTCTCTCTCAATTTTGGCCAAGCATGCAATACAGATGATAGACCACAGCAACAACATAATGCCACAGACGTCATTGTTCTTAGTGATTCTGATGAAGAGAATGATGCTATGGTTTGTCCACCAGCTGTCTATGACAATACTACCACTGCAAATGGTAGTGGTTTTCCTTTCACCACTAATGGTATTGGATATACTGAAAGGTACCAGGAAGATGCCGGCGTTGGTACAAGTGGCCTTGGTTTATTGAGTAACAATGTTGATGATTTTGAGATGAATAACTGGCAAATGCATTCTTCTTATCAACAACCTGAACAAGGCTTCCAGTTTTTTGGGAATGATACTGATGTCCATAATACTTTTGTTGGTTCACACAATTCCTTTGGCTTAGCACCAAATGACTATTCTCTTGATTGTAATGTTGGCGTAGAGGAGGCTTCGGTAACTCCTGCTCTTTCAGTCTGCCGGAATAGTAATGAAATGCATGGAAGTTTGGTTGATAACCCACTGGCTTTGGTTGGCGATGATCCATCCTTGCAAATTTTTCTTCCAAGTCAACCTTCCTCTGTTCCTCTTCAGGAAGAACTTAGCGAGCGTGCTAATGCACCAAATGGGGTTCAGTCTGATGATTGGATATCCCTTACACTCGCAGCGGGTGGAGGTGGTAACGAAGAGCCTGCACCTGCTGATGTCAATTCACAGCCACAAATTCCATCAACAGAGACAGGGATCGAACCATTGACCGATGCTGCTTCTGCATTTCTGAGCACAAACATTGAAAGACGTAGCGGAGCTGAT TTAAATCCAAGAAGGATAGAAAATATATTTTCTCATCCTCGCCAGCCTCGGTCTGTTAGGCCTCGACTCTGTTTATC AATAGATACTGATTCTGAGTAGTTTGGACATCATAACGGGGTAACTGAGTTTGCATTAGTTTGGCAAAGCTGCCATCC AGAAATCATGATTTATACTGAGGTGGGGTTATC GGTCGTCTGGTTGATGTAAAGAAAAACACCA GCA TTGATGCTTTGTTGCCTCAATGGTTTACAAGCTTTCAAGTGTTCTA TTTGAT CCA GGAGGGATCTGCATAGAGGACATCTGAT GGTTGGTATAGAAAATTTTCTAACT GGGTATCGAGGCTTAATGTGGCGACTGGAGCAG TTTGTACATTTTTTTTGTTTTGACTTTTACTGGATATAAGGAATAG AGGTGG GGTCAT CCCTGGA CCCTGGATGCAAGAC AAATACATGTGAATGTTTTGGGTGTACCATCATTGTATTTAGGGTTTGGGGGTACTAATTTAGTTGTTTATTAACCTGGTATTTGATGGAGAATAAATTATTCCTGGAAGTGGCGGCCAATAAACA GAGTCGTTGGGGTTTTACTTGGGTAAAAAAAAAAA] [+] EMBL CB650706 [ TGCTGCGCGTGTGGAGTCGCCATTCCCCAATTCGCTGCGCCGCCCGCCGGATCTCGTCTTGCCCCCTGCGGCGGCGGTTTGGGCCCCCCCTTCCGATCGGTTTCCCCCCCGCACATGGTCGTGGCGGCGGCGGAGGTGGTGGTGGTGCGGGAGTAGGGAGGCGGGCGAACCGAGGCGGCGGCGCCGATGGCGGACCTGGTTTCCAGCTGCAAGGATAAACTGGCATACTTTAGAATAAAGGAACTCAAAGATATATTAAATCAGCTCGGCTTACCAAAGCAAGGAAAGAAGCAGGATCTTATTGATAGGGTGTTGGCACTCTTAACAGATGAGCAAGGTCAAAGGCATCATGGATGGGGAAGGAAAAATTCTCTCACCAAGGAGGCAGTGGCAAAAATTGTTGATGATACATACAGCAGGAAAATGCAAATCCAATGTGCTCCTGATCTAGCCACCAGGAGCCACAGCGGATCAGATTTCAGTTTCAGGCCTATAGAGGAAGCCTATGACTCTTTCCAGCCAGAGGCCAAAGTTCGCTGCATTTGCAGTAGCACAATGGTTAATGACAGCATGATCCAGTGTGAAGATCAGCGATGCCAAGTGTGGCAACATTTGAATTGTGTACTCATTCCAGATAAGCCTGGGGAGAGCGCTGAAGTTCCACCCGTTTTCTACTGTGAATTATGCCGACTGAGTCGGGCAGACCCATTTTGGGTCACTGCTGGAAATCCATTACTCCCAGTGAAATTCGTGTCATCTGGTGTTACAAATGATGGAA ] [+] EMBL CB685703 [ ACAGTTTCTCTCTCAATTTTGGCCAAGCATGCAATACAGATGATAGACCACAGCAACAACATAATGCCACAGACGTCATTGTTCTTAGTGATTCTGATGAAGAGAATGATGCTATGGTTTGTCCACCAGCTGTCTATGACAATACTACCACTGCAAATGGTAGTGGTTTTCCTTTCACCACTAATGGTATTGGATATACTGAAAGGTACCAGGAAGATGCCGGCGTTGGTACAAGTGGCCTTGGTTTATTGAGTAACAATGTTGATGATTTTGAGATGAATAACTGGCAAATGCATTCTTCTTATCAACAACCTGAACAAGGCTTCCAGTTTTTTGGGAATGATACTGATGTCCATAATACTTTTGTTGGTTCACACAATTCCTTTGGCTTAGCACCAAATGACTATTCTCTTGATTGTAATGTTGGCGTAGAGGAGGCTTCGGTAACTCCTGCTCTTTCAGTCTGCCGGAATAGTAATGAAATGCATGGAAGTTTGGTTGATAACCCACTGGCTTTGGTTGGCGATGATCCATCCTTGCAAATTTTTCTTCCAAGTCAACCTTCCTCTGTTCCTCTTCAGGAAGAACTTAGCGAGCGTGCTAATGCACCAAATGGGGTTCAGTCTGATGATTGGATATCCCTTACACTCGCAGCGGGTGGAGGTGGTAACGAAGAGCCTGCACCTGCTGATGTCAATTCACAGCCACAAATTCCATCAACAGAGACAGGGATCGAACCATTGACCGATGCTGCTTCTGCATTTCTGAGCACAAACATTGAAAGACGTAGCGGAGCTGAT TTTAAT CAAGAAAGATAG AAATATATT ] [+] EMBL OS1321671 [ AACATTGAAAGACGTAGCGGA CTGATNTTAAATCCAAGAAGGATAGAAAATATATTTNCTCATCCTCGNCAGCCTCGGTCTGTTAGGCCTCGACTCTGTTTATC AATAGATACTGATTCTGAGTAGTTTGGACATCATAACGGGGTAACTGAGTTTGCATTAGTTTGGCAAAGCTGCCATCC AGAAATCATGATTTATACTGAGGTGGGGTTATC GGTCGTCTGGTTGATGTAAAGAAAAACACCA GCA TTGATGCTTTGTTGCCTCAATGGTTTACAAGCTTTCAAGTGTTCTATTTTGAT CCA GGAGGGATCTGCATAGAGGACATCTGATGGGTTGGTATAG AAATTTTCTAACTGGGGTATCGAGGCTTAATGTGGCGCCTGGAGCAGTTTTGTACAATTTNNTTGTTTTGAC TTTACTGGNTATAAGGAATAG AGGTGG G ] [+] EMBL BM422030 [ GCCAG CTCGGTCTGTTAG CTCGACTCTGTTTATT CATAGATACTGATTCTGAGTAGTTTGGACATCATAACGGGGTAACTGAGTTTGCATTAGTTTGGCAAAGCT CCATCC AGAAATCATGATTTATACTGAGGTGGGGTTATC GGTCGTCTGGTTGATGTAAAGAAAAACACCA GCA TTGATGCTTTGTTGCCTCAATGGTTTACAAGCTTTCAAGTGTTCTA TTTGAT CCA GGAGGGATCTGCATAGAGGACATCTGAT GGTTGGTATAGAAAATTTTCTAACT GGGTATCGAGGCTTAATGTGGCGACTGGAGCAG TTTGTACATTTTTTTTGTTTTGACTTTTACTGGATATAAGGAATAG AGGTGGCGGTCAT CCCTGGA CCCTGGATGCAAGAC AAATACATGTGAATGTTTTGTGTGTACCATCATTGTATTTA GGTTTGGGGGTACTAATTTAGTTGTTTATTAACCTGGTATTTGATGGAGAATAAATTATTCCTGGAAGT GCCGCCCATAACCACGCGTCGTTGGGCTTTTACTTGGGTAAAAAA ] [+] EMBL BI811615 [ TTAGCCCTCGACTCTGTTTATCAAATAGATACTGATTCTGAGTAGTTTGGACATCATAACGGGGTAACTGAGTTTGCATTAGTTT GCAAAGCT CCATCCAAGAAATCATGATTTATACTGA GTGGGTTTATCAGGTCGTCTGGTTGATGTAAAGAAAAACACCACGCA TTGATGCTTTGTT CCTCAATGGTTTACAAGCTTTCAAGTGTTCTA TTTGAT CCA GGAGGGATCTGCATAGAGGACATCTGAT GTTGGTATAGAAAATTTTCTAACT GGGTATCGAGGCTTAATGTGGCGACTGGA CAG TTTGTACATTTTTTTTGTTTTGACTTTTACTGGATATAAGGAATAG AGGTGG GGTCATCCCCTGGACCCCTGGATGCAAGACAAAATACATGTGAATGTTTTGTGTGTACCATCATTGTATTTAGGGTTTGGGGGTACTAAaaaaaaaa ] [+] EMBL BI811017 [ GACTCTGTTTATC AATAGATACTGATTCTGAGTAGTTTGGACATCATAACGGGGTAACTGAGTTTGCATTAGTTT GCAAAGCTGCCATCC AGAAATCATGATTTATACTGAGGTGGGGTTATC GGTCGTCTGGTTGATGTAAAGAAAAACACCA GCACTTGATGCTTTGTTGCCTCAATGGTTTACAAGCTTTCAAGTGTTCTA TTTGATCCCACGGAGGGATCTGCATAGAGGACATCTGAT GGTTGGTATAGAAAATTTTCTAACT GGGTATCGAGGCTTAATGTGGCGACTGGAGCAG TTTGTACATTTTTTTTGTTTTGACTTTTACTGGATATAAGGAATAG AGGTGG GGTCATCCCCTGGACCCCTGGATGCAAGAC AAATACATGTGAATGTTTTGTGTGTACCATCATTGTATTTAGGGTTTGGGGGTACTAATTTAGTTGTTTATTAACCTGGTATTTGATGGAGAATAAAaaaa ] [+] EMBL BQ906172 [ GGCAAAGCTGCCATCC AGAAATCATGATTTATACTGAGGTGGGGTTATC GGTCGTCTGGTTGATGTAAAGAAAAACACCA GCA TTGATGCTTTGTTGCCTCAATGGTTTACAAGCTTTCAAGTGTTCTA TTTGAT CCA GGAGGGATCTGCATAGAGGACATCTGAT GGTTGGTATAGAAAATTTTCTAACT GGGTATCGAGGCTTAATGTGGCGACTGGAGCAG TTTGTACATTTTTTTTGTTTTGACTTTTACTGGATATAAGGAATAGAAGGTGG GGTCAT CCTGGA CCCTGGATGCAAGAC AAATACATGTGAATGTTTTGTGTGTACCATCATTGTATTTAGGGTTTGGGGGTACTAATTTAGTTGTTTATTAACCTGGTATTTGATGGAGAATAAATTATTCCTGGAAGTGGCGGCCAATAAACA GACTCGTTGGGGTTTTA AAAAAAAAA ] [+] EMBL BE229385 [ cgagAAG TG CAT C AG AATCATGA TTATACTGAGGTGGGGTTATC GGTCGKCTGGTTGATGTAAAGAAAAACACCA GCA TTGATGCTTTGTTGCCTCAATGGTTTACAAGCTTTCAAGTGTTCTA TTTGAT CCA GGAGGGATCTGCATAGAGGACATCTGAT GGTTGGTATAGAAAATTTTCTAACT GGGTATCGAGGCTTAATGTGGCGACTGGAGCAG TTTGTACATTTTTTTTGTTTTGACTTTTACTGGATATAAGGAATAG AGGTGG GGTCAT CCCTGGA CCCTGGATGCAAGAC AAATACATGTGAATGTTTTGGGTGTACCATCATTGTATTTAGGGTTTGGGGGKACTAATTTAGTTGTTTATTAACCCGGKATTTGATGGAGAATAAATTATTCCCGG AGKSGCGGC ] [+] EMBL AU172478 [ CTGCCATCC AGAAATCATGATTTATACTGAGGTGGGGTTATC GGTCGTCTGGTTGATGTAAAGAAAAACACCA GCA TTGATGCTTTGTTGCCTCAATGGTTTACAAGCTTTCAAGTGTTCTA TTTGAT CCA GGAGGGATCTGCATAGAGGACATCTGAT GGTTGGTATAGAAAATTTTCTAACT GGGTATCGAGGCTTAATGTGGCGACTGGAGCAG TTTGTACATTTTTTTTGTTTTGACTTTTACTGGATATAAGGAATAG AGGTGG GGTCAT CCCTGGA CCCTGGATGCAAGAC AAATACATGTGAATGTTTTGGGTGTACCATCATTGTATTTAGGGTTTGGGGGTACTAATTTAGTTGTTTATTAACCTGGTATTTGATGGAGAATAAATTATTCCTGGAAGTGGCGGCCAATAAACA GAGTCGTTGGGGTTTTAaaaa ] consensusID : consensus_13211#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 482 fasta sequence [ATACTCGAGTTTGCTATGTTAGGTGTTGGGGCTAGAAAGCTGGCCCTATNCCCTAGGAGAATGCTATGGATGTGTGATGACTGGAGGTCGGGGGTTATCGGTGCGTGCTGGGGTTGATGGTGAAAGAATAATACACCAGCTATTGGATGGCTTTGTNTGGGCCTGCAATGGTTTTTACAAGCTGTTGCAAGTGTTGCTGATTNTGGATGCCAGGAGGGGATGCTGCATGAGAGGACATGCTGGATGGTTGGTATAGAAAATTTTCTAACTGGGTATCGAGGCTTAATGTGGCGACTGGAGCAGTTTGTACATTTTTTTTGTTTTGACTTTTACTGGATATAAGGAATAGAGGTGGGGTCATCCCTGGACCCTGGATGCAAGACAAATACATGTGAATTTTTGTGGTGTACCATCATTGTATTTAGGTTTGGGGGTACTAATTTAGTTGTTTATTAACCTGGTATTTGATGGAGAATAAAAAA] [+] EMBL BQ907843 [ATACTCGAGTTTGCTATGTTAGGTGTTGGGGCTAGAAAGCTGGCCCTATNCCCTAGGAGAATGCTATGGATGTGTGATGACTGGAGGTCGGGGGTTATCGGTGCGTGCTGGGGTTGATGGTGAAAGAATAATACACCAGCTATTGGATGGCTTTGTNTGGGCCTGCAATGGTTTTTACAAGCTGTTGCAAGTGTTGCTGATTNTGGATGCCAGGAGGGGATGCTGCATGAGAGGACATGCTGGATGGTTGGTATAGAAAATTTTCTAACTGGGTATCGAGGCTTAATGTGGCGACTGGAGCAGTTTGTACATTTTTTTTGTTTTGACTTTTACTGGATATAAGGAATAGAGGTGGGGTCATCCCTGGACCCTGGATGCAAGACAAATACATGTGAATTTTTGTGGTGTACCATCATTGTATTTAGGTTTGGGGGTACTAATTTAGTTGTTTATTAACCTGGTATTTGATGGAGAATAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13211#0 AACAAACCACAACGAACTACCCCCTCCTCGTCGAGCCGACGCGAGAGAGGAAAGTGGGTT 60 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 GCGGNTTGCTGCGCGTGTGGAGTCGCCATTCCCCAATTCGCTGCGCCGCCCGCCGGATCT 120 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 CGTCTTGCCCCCTGCGGCGGCGGTTTGGGCCCCCCCTTCCGATCGGTTTCCCCCCCGCAC 180 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 ATGGTCGTGGCGGCGGCGGAGGTGGTGGTGGTGCGGGAGTAGGGAGGCGGGCGAACCGAG 240 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 GCGGCGGCGCCGATGGCGGACCTGGTTTCCAGCTGCAAGGATAAACTGGCATACTTTAGA 300 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 ATAAAGGAACTCAAAGATATATTAAATCAGCTCGGCTTACCAAAGCAAGGAAAGAAGCAG 360 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 GATCTTATTGATAGGGTGTTGGCACTCTTAACAGATGAGCAAGGTCAAAGGCATCATGGA 420 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 TGGGGAAGGAAAAATTCTCTCACCAAGGAGGCAGTGGCAAAAATTGTTGATGATACATAC 480 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 AGGAAAATGCAAATCCAATGTGCTCCTGATCTAGCCACCAGGAGCCACAGCGGATCAGAT 540 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 TTCAGTTTCAGGCCTATAGAGGAAGCCTATGACTCTTTCCAGCCAGAGGCCAAAGTTCGC 600 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 TGCATTTGCAGTAGCACAATGGTTAATGACAGCATGATCCAGTGTGAAGATCAGCGATGC 660 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 CAAGTGTGGCAACATTTGAATTGTGTACTCATTCCAGATAAGCCTGGGGAGAGCGCTGAA 720 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 GTTCCACCCGTTTTCTACTGTGAATTATGCCGACTGAGTCGGGCAGACCCATTTTGGGTC 780 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 ACTGCTGGAAATCCATTACTCCCAGTGAAATTCGTGTCATCTGGTGTTACAAATGATGGA 840 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 ACAAGTGTACCTCAAAGTGTGGAGAAAAGCTTCCAGCTTTCTCGATCAGATAGAGAAACT 900 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 GTCCAGAGACAAGAATATGACCTCCAGGTTTGGTGCATGCTTTTGAATGACAAAGTTCAG 960 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 TTCAGGATGCAGTGGCCCCAATATGCAGAATTGCATGTTAATGGTATTTCTGTACGAGTA 1020 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 GTGACTAGACCTGGTTCTCAATTACTAGGGATAAATGGACGGGATGATGGTCCACTGATA 1080 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 ACCACATGCAGTAGAGAGGGAATTAATAAAATTTGCTTATCAAGGGTCGATGCTCGGACA 1140 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 TTTTGCTTTGGTGTTCGAATTGCTAAACGGAGGACTGTTGCTCAGGTTTTGAACTTAGTT 1200 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 CCAAAGGAAGCTGAAGGAGAGTCTTTTGAGCATGCTCTTGCTCGTGTTCGGCGCTGTCTC 1260 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 GGAGGTGGAGACACTGCAGAGAATGCTGATAGTGACAGTGATTTGGAAGTGGTTGCGGAG 1320 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 TCTGTTACAGTCAACCTTCGTTGCCCTAATAGTGGATCCAGAATGAGGATTGCTGGGAGA 1380 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 TTCAAGCCTTGCATTCACATGGGTTGTTTTGATCTTGAAACTTTCGTGGAATTGAATCAA 1440 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 CGGTCCCGCAAGTGGCAATGTCCAATATGTTTAAAGAATTACTCTCTTGAGAGCTTGATG 1500 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 ATTGATCCTTACTTCAATAGGATTACTTCTCTGTTGCGCAATTGCAATGAGGATGTCAAT 1560 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 GAGGTTGATGTTAAGCCTGACGGATCTTGGCGTGTGAAGGGTGATGCTGCAAGTAGAGAA 1620 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 TTATCTCAGTGGCATATGCCTGATGGTACCCTTTGTAATCCTAAGGAAGATGTCAAACCT 1680 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 GCCATGCAAAATGGAAATGAACAAATGATGGAAGGTACTTCTGATGGACAGAAATCTTTG 1740 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 AAAATTGGAATAAAGAGAAATCCAAATGGAATCTGGGAAGTTAGTAGCAAAGCAGATGAC 1800 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 AAGAAGCCTTCTGTGGTTGGAAATCGCATGCAAAACAATAGTGGGTTCCGAGCTCTAAAC 1860 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 AACATTATGCATATGAGCAATAGCCCAACTAGTAGTTATAGAGACGGGGAAGACCCAAGT 1920 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 GTGAACCAAGAGAGCAATAGGCATGTTGACTTATCATTGAACAATGGTAATAATGAGTTT 1980 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 GACAGTTTCTCTCTCAATTTTGGCCAAGCATGCAATACAGATGATAGACCACAGCAACAA 2040 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 CATAATGCCACAGACGTCATTGTTCTTAGTGATTCTGATGAAGAGAATGATGCTATGGTT 2100 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 TGTCCACCAGCTGTCTATGACAATACTACCACTGCAAATGGTAGTGGTTTTCCTTTCACC 2160 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 ACTAATGGTATTGGATATACTGAAAGGTACCAGGAAGATGCCGGCGTTGGTACAAGTGGC 2220 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 CTTGGTTTATTGAGTAACAATGTTGATGATTTTGAGATGAATAACTGGCAAATGCATTCT 2280 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 TCTTATCAACAACCTGAACAAGGCTTCCAGTTTTTTGGGAATGATACTGATGTCCATAAT 2340 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 ACTTTTGTTGGTTCACACAATTCCTTTGGCTTAGCACCAAATGACTATTCTCTTGATTGT 2400 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 AATGTTGGCGTAGAGGAGGCTTCGGTAACTCCTGCTCTTTCAGTCTGCCGGAATAGTAAT 2460 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 GAAATGCATGGAAGTTTGGTTGATAACCCACTGGCTTTGGTTGGCGATGATCCATCCTTG 2520 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 CAAATTTTTCTTCCAAGTCAACCTTCCTCTGTTCCTCTTCAGGAAGAACTTAGCGAGCGT 2580 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 GCTAATGCACCAAATGGGGTTCAGTCTGATGATTGGATATCCCTTACACTCGCAGCGGGT 2640 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 GGAGGTGGTAACGAAGAGCCTGCACCTGCTGATGTCAATTCACAGCCACAAATTCCATCA 2700 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 ACAGAGACAGGGATCGAACCATTGACCGATGCTGCTTCTGCATTTCTGAGCACAAACATT 2760 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 GAAAGACGTAGCGGAGCTGATTTAAATCCAAGAAGGATAGAAAATATATTTTCTCATCCT 2820 consensus_13211#1 ------------------------------------------------------------ consensus_13211#0 CGCCAGCCTCGGTCTGTTAGGCCTCGACTCTGTTTATCAATAGATACTGATTCTGAGTAG 2880 consensus_13211#1 -------------------------------------------ATACTCGAGTTTGCTAT 17 ***** * ** consensus_13211#0 TTTGGACATCATAACGGGGTAACTGAGTTTGCATTAGTTTGGCAAAGCTGCCATCCAGAA 2940 consensus_13211#1 GTTAGGTGTTGGGGCTAGAAAGCTGGCCCTATNC---CCTAGGAGAA-TGCTATGGATGT 73 ** * * * * * *** * * * * * *** ** * consensus_13211#0 ATCATGATTTATACTGAGGTGGGGTTATCGGT-CGTCT---GGTTGATGTAAAGAAAA-- 2994 consensus_13211#1 GTGATGACTGGAGGTCGG---GGGTTATCGGTGCGTGCTGGGGTTGATGGTGAAAGAATA 130 * **** * * * *********** *** ******** * * ** consensus_13211#0 --ACACCAGC-ATTGAT--GCTTTGTT---GCCT-CAATGGTTT--ACAAGCTTT--CAA 3041 consensus_13211#1 ATACACCAGCTATTGGATGGCTTTGTNTGGGCCTGCAATGGTTTTTACAAGCTGTTGCAA 190 ******** **** ******* **** ********* ******* * *** consensus_13211#0 GTGTTC----TATTTGAT-CCAGGAGGGAT--CTGCAT-AGAGGACATCT--GATGGTTG 3091 consensus_13211#1 GTGTTGCTGATTNTGGATGCCAGGAGGGGATGCTGCATGAGAGGACATGCTGGATGGTTG 250 ***** * * *** ********* ****** ********* ******** consensus_13211#0 GTATAGAAAATTTTCTAACTGGGTATCGAGGCTTAATGTGGCGACTGGAGCAGTTTGTAC 3151 consensus_13211#1 GTATAGAAAATTTTCTAACTGGGTATCGAGGCTTAATGTGGCGACTGGAGCAGTTTGTAC 310 ************************************************************ consensus_13211#0 ATTTTTTTTGTTTTGACTTTTACTGGATATAAGGAATAGAGGTGGGGTCATCCCTGGACC 3211 consensus_13211#1 ATTTTTTTTGTTTTGACTTTTACTGGATATAAGGAATAGAGGTGGGGTCATCCCTGGACC 370 ************************************************************ consensus_13211#0 CTGGATGCAAGACAAATACATGTGAATGTTTTGTGTGTACCATCATTGTATTTAGGGTTT 3271 consensus_13211#1 CTGGATGCAAGACAAATACATGTGAATTTTTGTGGTGTACCATCATTGTATTTAGG-TTT 429 *************************** *** ********************** *** consensus_13211#0 GGGGGTACTAATTTAGTTGTTTATTAACCTGGTATTTGATGGAGAATAAATTATTCCTGG 3331 consensus_13211#1 GGGGGTACTAATTTAGTTGTTTATTAACCTGGTATTTGATGGAGAATAAAAAA------- 482 ************************************************** * consensus_13211#0 AAGTGGCGGCCAATAAACAGAGTCGTTGGGGTTTTACTTGGGTAAAAAAAAAAA 3385 consensus_13211#1 ------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||