These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13222#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 2960 fasta sequence [CTCTAGCTTGACTCTATACCCGTCGTCTTCAGTCTCCTCCTCCCCTCTCATCGCCACTCTCCTCGTCTCCTCCATGCCTCAGAGTGATTAGTTGAGAGGAGGAATCAAGAATCGAGGGAGAGGGTGAGGGAGATGGAGATCGAGGAGGCGGGCGGCGCCGGGGAGGATGAGCTGGAAATGGAGGCTCCGAGCGTGAGCACGGTGGCGATTGCGGTGAACGGGAGCAGGAACAGCAAGCACGCACTCAAGTGGGCTCTCGACAAGTTCGTCCCCGAAGGAAAGGTCCTCTTCCAGATCTTGCATGTCCGCCCCACCATCAAGATGGTGCCAACTCCAATGGGCAATTTCATTCCAATCACACAAGTGCGTGAAGACGTAGCAACTGCATACAAGAAAGAAGTGGAATGGCAAGCAAACAATATGTTGCTTCCTTACAAGAAGATGTGTGCTCAGAGAAAGGTAGAAGCTGAAGCTGTTTTACTCGAATCTGACGATGTGCCTACTGCTATAAGCGAAGAAATCAGCAAATTCAGTGTCTGCAAGTTAGTTTTAGGTTCTTCTAGCAGCATATTCCGAAGGAAAAACAAAGGAAGTAAGACTGCGACCAAAATCTGTGAGTGCATTCCAAGCTTCTGCACAGCATACGTTGTCTCAAAAGGAAAACTATCATCTGTGCACTCAGCTACATCTGATGCCATCGGAACACCTGAATCCATTTCTTCTTCAACTGTTTCATCCCCAAGCTCTAGAAGCTTTTCATCCAGTGTACCCTCAGAATGGGGAGACACATATGGGTCAGCAAATGTGTCATTCCACCAGCCATCTCTGTCATCTCAGCGTGACCAAGCAATTGCAAACATGAATAAGTTATCCAACAGGAGAGCTAGCCCTTCAGGCAGTGGTGGGAGTGAGATCTCCAACCATGATGATACAGTCCTGACAAGTTCACACTCGATCAATTCAGAAACACGGTTCAGTAGCAGCAGCAGTGGGAATTCTATCTATAAGAGCTTCAATAGAGATCGTTCATTTGATAACTCTGATCAGGCATCCGTGTCAGATATGGCAACAAATCTGAAACATTCTCATGACCAGGAGTATCTAAAGCTTGAGATTGAGAGGCTGAGGGTTAAACTACGGCATCTTCAGAAGCTTAATGAGTTAGCTCAGAAAGAATCATTGGACGCCAATCAGAAATTACATAAGTTGGGCATCCAGGACATTGAGGATGAAATTAAGCTTAAAGAGACAGAACTGACAGAAGAAAAGGTAAGGAGATTGATAAGGAAAAAAGAGAGAGAAGAACAGGAAGTTGCCAGAAGAGAAGATCAATTAAGAAATGAAAATGCTGAAAGTGAAGCAACAAAACAGAGTAATGGCAATCAGGAAGGTGATGAGAATAAGACAGGAGAGAGGATTTTCGTGCGCTGTTTTGACGAGTATAACAGGTATACCTGGGAGGAGATAAAAGCATCGACTTTGTCACTGTCTGAGGATCTTATGATTGGCAGGGGATCATATGGTACAGTGTACAAGGCTAAGTTTCATCATACAGTTGCAGCAGTAAAAGTTCTGAACTCCCCTGAAGGCTGTGGAACTCAGCAATTACAACAGGAGCTTGAGGTCCTAGGTAAAATCCGGCACCCTCACTTGCTCCTGATGCTAGGTGCATGCCCTGAGCATGGTTGCTTGGTCTACGAATTCATGGAAAATGGCAGCTTGGATGACATGCTGCAACGGAGAAATAATACACCGCCATTGACCTGGTTTGACCGTTTCAGAATTGCTTGGGAGGTTGCAACTGCTCTTATGTTCCTTCACAGTTCCAAACCAGAGCCTATCATACACCGGGATCTGAAGCCCGCAAACATATTGCTTGACAGGAACTTGGTTAGCAAGATAGGTGATGTAGGTCTATCAACTTTGCTTCCAAGTATGGATCAGTACCTGTCCACAATGATCAAGAACACTGCT-CCAGTGGGCACTTTCTGTTACATAGACCCAGAGTATCAGAGAAGTGGCGTGGTCTCCATGAAGTCCGATGTTTATGCTCTAGGGATCGTGATCTTGCAATTGCTGACAGCGAAGTCACCAATGGGGATTGCCCATGTTGTGGAGACTGCACTAGAAGATGGACACTTCGTGGACATTCTGGATGCAGCTGCTGGGCAGTGGCCTTTGAATGAGGCACAAGAATTGGCTTTCCTAGCCCTAAAGTGTGCCGAAATGAGGCGCAGAGACCGGCCCGACTTGAGCGATCATGTTCTTCCAGCATTGGAGCGGCTGAAGGATGTTGCAACCAAGGCCAGAGAAATGGCTTTTAATGGCCACCAAACAGCACCTCCAAGTCACTTCATTTGCCCCATACTTCAGGAAGTGATGGCTGATCCATATGTCGCATCGGATGGGTACACATATGACCGGAAGGCGATCGAGCTGTGGCTAAGTATGAATGACAAGTCCCCTATGACAAATCTGAGATTGCCTCACAAGAGCCTTATACCAAATCACTCGCTTCGTTCTGCAATCATCGACTGGAGAACAAAGAGTTAGTAGCTGGTACACATTCTGGCCTGCATTCTCCAGAATGTAGCAGTTGATGATTGATTTTCTTCTCAAGGTGTAAATTTTTTGCAGATCTCATGTAGAAGTAGTCTTCATGTTGGTTCC-AAAAATAAAAAATAAAATAAAATAAGTGGTGTTCATAAAGAGGTTCAAGTTGTGCAGCTTTATCAAATAGTAGTAGTAGAAATTGTTTCCTACTAGCTCATAGGCAAACACCTTCCACCTCACTGTCTTAGTGAATGGTGAACAATTATTTTTTTCTCCTTTGCCATTCATAATGATGTGTTGTAAGCTTGTAATTAGTGCTCTCAACATTTGATCTGA-TTGTAGGAAATCTTAATGAAAATTCAGTATGAAGCTTGGGTAGAGTAAAAGAAAAAAAGCTTGCGGGGGGG] [+] EMBL AK065683 [CTCTAGCTTGACTCTATACCCGTCGTCTTCAGTCTCCTCCTCCCCTCTCATCGCCACTCTCCTCGTCTCCTCCATGCCTCAGAGTGATTAGTTGAGAGGAGGAATCAAGAATCGAGGGAGAGGGTGAGGGAGATGGAGATCGAGGAGGCGGGCGGCGCCGGGGAGGATGAGCTGGAAATGGAGGCTCCGAGCGTGAGCACGGTGGCGATTGCGGTGAACGGGAGCAGGAACAGCAAGCACGCACTCAAGTGGGCTCTCGACAAGTTCGTCCCCGAAGGAAAGGTCCTCTTCCAGATCTTGCATGTCCGCCCCACCATCAAGATGGTGCCAACTCCAATGGGCAATTTCATTCCAATCACACAAGTGCGTGAAGACGTAGCAACTGCATACAAGAAAGAAGTGGAATGGCAAGCAAACAATATGTTGCTTCCTTACAAGAAGATGTGTGCTCAGAGAAAGGTAGAAGCTGAAGCTGTTTTACTCGAATCTGACGATGTGCCTACTGCTATAAGCGAAGAAATCAGCAAATTCAGTGTCTGCAAGTTAGTTTTAGGTTCTTCTAGCAGCATATTCCGAAGGAAAAACAAAGGAAGTAAGACTGCGACCAAAATCTGTGAGTGCATTCCAAGCTTCTGCACAGCATACGTTGTCTCAAAAGGAAAACTATCATCTGTGCACTCAGCTACATCTGATGCCATCGGAACACCTGAATCCATTTCTTCTTCAACTGTTTCATCCCCAAGCTCTAGAAGCTTTTCATCCAGTGTACCCTCAGAATGGGGAGACACATATGGGTCAGCAAATGTGTCATTCCACCAGCCATCTCTGTCATCTCAGCGTGACCAAGCAATTGCAAACATGAATAAGTTATCCAACAGGAGAGCTAGCCCTTCAGGCAGTGGTGGGAGTGAGATCTCCAACCATGATGATACAGTCCTGACAAGTTCACACTCGATCAATTCAGAAACACGGTTCAGTAGCAGCAGCAGTGGGAATTCTATCTATAAGAGCTTCAATAGAGATCGTTCATTTGATAACTCTGATCAGGCATCCGTGTCAGATATGGCAACAAATCTGAAACATTCTCATGACCAGGAGTATCTAAAGCTTGAGATTGAGAGGCTGAGGGTTAAACTACGGCATCTTCAGAAGCTTAATGAGTTAGCTCAGAAAGAATCATTGGACGCCAATCAGAAATTACATAAGTTGGGCATCCAGGACATTGAGGATGAAATTAAGCTTAAAGAGACAGAACTGACAGAAGAAAAGGTAAGGAGATTGATAAGGAAAAAAGAGAGAGAAGAACAGGAAGTTGCCAGAAGAGAAGATCAATTAAGAAATGAAAATGCTGAAAGTGAAGCAACAAAACAGAGTAATGGCAATCAGGAAGGTGATGAGAATAAGACAGGAGAGAGGATTTTCGTGCGCTGTTTTGACGAGTATAACAGGTATACCTGGGAGGAGATAAAAGCATCGACTTTGTCACTGTCTGAGGATCTTATGATTGGCAGGGGATCATATGGTACAGTGTACAAGGCTAAGTTTCATCATACAGTTGCAGCAGTAAAAGTTCTGAACTCCCCTGAAGGCTGTGGAACTCAGCAATTACAACAGGAGCTTGAGGTCCTAGGTAAAATCCGGCACCCTCACTTGCTCCTGATGCTAGGTGCATGCCCTGAGCATGGTTGCTTGGTCTACGAATTCATGGAAAATGGCAGCTTGGATGACATGCTGCAACGGAGAAATAATACACCGCCATTGACCTGGTTTGACCGTTTCAGAATTGCTTGGGAGGTTGCAACTGCTCTTATGTTCCTTCACAGTTCCAAACCAGAGCCTATCATACACCGGGATCTGAAGCCCGCAAACATATTGCTTGACAGGAACTTGGTTAGCAAGATAGGTGATGTAGGTCTATCAACTTTGCTTCCAAGTATGGATCAGTACCTGTCCACAATGATCAAGAACACTGCT CCAGTGGGCACTTTCTGTTACATAGACCCAGAGTATCAGAGAAGTGGCGTGGTCTCCATGAAGTCCGATGTTTATGCTCTAGGGATCGTGATCTTGCAATTGCTGACAGCGAAGTCACCAATGGGGATTGCCCATGTTGTGGAGACTGCACTAGAAGATGGACACTTCGTGGACATTCTGGATGCAGCTGCTGGGCAGTGGCCTTTGAATGAGGCACAAGAATTGGCTTTCCTAGCCCTAAAGTGTGCCGAAATGAGGCGCAGAGACCGGCCCGACTTGAGCGATCATGTTCTTCCAGCATTGGAGCGGCTGAAGGATGTTGCAACCAAGGCCAGAGAAATGGCTTTTAATGGCCACCAAACAGCACCTCCAAGTCACTTCATTTGCCCCATACTTCAGGAAGTGATGGCTGATCCATATGTCGCATCGGATGGGTACACATATGACCGGAAGGCGATCGAGCTGTGGCTAAGTATGAATGACAAGTCCCCTATGACAAATCTGAGATTGCCTCACAAGAGCCTTATACCAAATCACTCGCTTCGTTCTGCAATCATCGACTGGAGAACAAAGAGTTAGTAGCTGGTACACATTCTGGCCTGCATTCTCCAGAATGTAGCAGTTGATGATTGATTTTCTTCTCAAGGTGTAAATTTTTTGCAGATCTCATGTAGAAGTAGTCTTCATGTTGGTTCC AAAAATAAAAAATAAAATAAAATAAGTGGTGTTCATAAAGAGGTTCAAGTTGTGCAGCTTTATCAAATAGTAGTAGTAGAAATTGTTTCCTACTAGCTCATAGGCAAACACCTTCCACCTCACTGTCTTAGTGAATGGTGAACAATTATTTTTTTCTCCTTTGCCATTCATAATGATGTGTTGTAAGCTTGTAATTAGTGCTCTCAACATTTGATCTGA TTGTAGGAAATCTTAATGAAAATTCAGT ] [+] EMBL CB634275 [ ATACCCGTCGTCTTCAGTCTCCTCCTCCCCTCTCATCGCCACTCTCCTCGTCTCCTCCATGCCTCAGAGTGATTAGTTGAGAGGAGGAATCAAGAATCGAGGGAGAGGGTGAGGGAGATGGAGATCGAGGAGGCGGGCGGCGCCGGGGAGGATGAGCTGGAAATGGAGGCTCCGAGCGTGAGCACGGTGGCGATTGCGGTGAACGGGAGCAGGAACAGCAAGCACGCACTCAAGTGGGCTCTCGACAAGTTCGTCCCCGAAGGGAAGGTCCTCTTCCAGATCTTGCATGTCCGCCCCACCATCAAGATGGTGCCAACTCCAATGGGCAATTTCATTCCAATCACACAAGTGCGTGAAGACGTAGCAACTGCATACAAGAAAGAAGTGGAATGGCAAGCAAACAATATGTTGCTTCCTTACAAGAAGATGTGTGCTCAGAGAAAGGTAGAAGCTGAAGCTGTTTTACTCGAATCTGACGATGTGCCTACTGCTATAAGCGAAGAAATCAGCAAATTCAGTGTCTGCAAGTTAGTTTTAGGTTCTTCTAGCAGCATATTCCGAAGGAAAAACAAAGGAAGTAAGACTGCGACCAAAATCTGTGAGTGCATTCCAAGCTTCTGCACAGCATACGTTGTCTCAAAAGGAAAACTATCATCTGTGCACTCAGCTACATCTGATGCCATCGGAACACCTGAATCCATTTCTTCTTCAACTGTTTCATCCCCAAGCTCTAGAAGCTTTTCATCCAGTGTACCCTCAGAATGGGGAGACACATATGGGTCAGCA ] [+] EMBL CB663207 [ CTCGTCTCCTCCATGCCTCAGAGTGATTAGTTGAGAGGAGGAATCAAGAATCGAGGGATAGGGTGAGGGAGATGGAGATCGAGGAGGCGGGCGGCGCCGGGGAGGATGAGCTGGAAATGGAGGCTCCGAGCGTGAGCACGGTGGCGATTGCGGTGAACGGGAGCAGGAACAGCAAGCACGCACTCAAGTGGGCTCTCGACAAGCTCGTCCCCGAAGGAAAGGTCCTCTTCCAGATCTTGCATGTCCGCCCCACCATCAAGATGGTGCCAACTCCAATGGGCAATTTCATTCCAATCACACAAGTGCGTGAAGACGTAGCAACTGCATACAAGAAAGAAGTGGAATGGCAAGCAAACAATATGTTGCTTCCTTACAAGAAGATGTGTGCTCAGAGAA AGAAGCTGAAGCTGTTTTACTCGAATCTGACGATGTGCCTACTGCTATAAGCGAAGAAATCAGCAAATTCAGTGTCTGCAAGTTAGTTTTAGGTTCTTCTAGCAGCATATTCCGAAGGAAAAACAAAGGAAGTAAGACTGCGACCAAGATCTGTGAGTGCATTCCAAGCTTCTGCACAGCATACGTTGTCTCAAAAGGAAAACTATCATCTGTGCACTCAGCTACATCTGATGCCATCGGAACACCTGAATCCATTTCTTCTTCAACTGTTTCATCCCCAAGCTCTAGAAGCTTTTCATCCAGTGTACCCTCACAATGGGGAGACACATATGGGTCAGCAAATGTGTCATTCCACC ] [+] EMBL CB661735 [ agGGCATCTTCAGAAGCTTAATGAGTTAGCTCAGAAAGAATCATTGGACGCCAATCAGAAATTACATAAGTTGGGCATCCAGGACATTGAGGATGAAATTAAGCTTAAAGAGACAGAACTGACAGAAGAAAAGGTAAGGAGATTGATAAGGAAAAAAGAGAGAGAAGAACAGGAAGTTGCCAGAAGAGAAGATCAATTAAGAAATGAAAATGCTGAAAGTGAAGCAACAAAACAGAGTAATGGCAATCAGGAAGGTGATGAGAATAAGACAGGAGAGAGGATTTTCGTGCGCTGTTTTGACGAGTATAACAGGTATACCTGGGAGGAGATAAAAGCATCGACTTTGTCACTGTCTGAGGATCTTATGATTGGCAGGGGATCATATGGTACAGTGTACAAGGCTAAGTTTCATCATACAGTTGCAGCAGTAAAAGTTCTGAACTCCCCTGAAGGCTGTGGAACTCAGCAATTACAACAGGAGCTTGAGGTCCTAGGTAAAATCCGGCACCCTCACTTGCTCCTGATGCTAGGTGCATGCCCTGAGCATGGTTGCTTGGTCTACGAATTCATGGAAAATGGCAGCTTGGATGACATGCTGCAACGGAGAAATAATACACCGCCATTGACCTGGTTTGACCGTTTCAGAATTGCTTGGGAGGTTGCAACTGCTCTTATGTTCCTTCACAGTTCCAAACCAGAGCCTATCATACACCGGGATCTGAAGCCCGCAAACATATTGCTTGACAGGAACTTGGTTAGCAAGATAGGTGATGTAGGTCTATCAACTTTGCTTCCAAGTATGGA ] [+] EMBL AY224495 [ CAGGACATTGAGGATGAAATTAAGCTTAAAGAGACAGAACTGACAGAAGAAAAGGTAAGGAGATTGATAAGGAAAAAAGAGAGAGAAGAACAGGAAGTTGCCAGAAGAGAAGATCAATTAAGAAATGAAAATGCTGAAAGTGAAGCAACAAAACAGAGTAATGGCAATCAGGAAGGTGATGAGAATAAGACAGGAGAGAGGATTTTCGTGCGCTGTTTTGACGAGTATAACAGGTATACCTGGGAGGAGATAAAAGCATCGACTTTGTCACTGTCTGAGGATCTTATGATTGGCAGGGGATCATATGGTACAGTGTACAAGGCTAAGTTTCATCATACAGTTGCAGCAGTAAAAGTTCTGAACTCCCCTGAAGGCTGTGGAACTCAGCAATTACAACAGGAGCTTGAGGTCCTAGGTAAAATCCGGCACCCTCACTTGCTCCTGATGCTAGGTGCATGCCCTGAGCATGGTTGCTTGGTCTACGAATTCATGGAAAATGGCAGCTTGGATGACATGCTGCAACGGAGAAATAATACACCGCCATTGACCTGGTTTGACCGTTTCAGAATTGCTTGGGAGGTTGCAACTGCTCTTATGTTCCTTCACAGTTCCAAACCAGAGCCTATCATACACCGGGATCTGAAGCCCGCAAACATATTGCTTGACAGGAACTTGGTTAGCAAGATAGGTGATGTAGGTCTATCAACTTTGCTTCCAAGTATGGATCAGTACCTGTCCACAATGATCAAGAACACTGCT CCAGTGGGCACTTTCTGTTACATAGACCCAGAGTATCAGAGAAGTGGCGTGGTCTCCATGAAGTCCGATGTTTATGCTCTAGGGATCGTGATCTTGCAATTGCTGACAGCGAAGTCACCAATGGGGATTGCCCATGTTGTGGAGACTGCACTAGAAGATGGACACTTCGTGGACATTCTGGATGCAGCTGCTGGGCAGTGGCCTTTGAATGAGGCACAAGAATTGGCTTTCCTAGCCCTAAAGTGTGCCGAAATGAGGCGCAGAGACCGGCCCGACTTGAGCGATCATGTTCTTCCAGCATTGGAGCGGCTGAAGGATGTTGCAACCAAGGCCAGAGAAATGGCTTTTAATGGCCACCAAACAGCACCTCCAAGTCACTTCATTTGCCCCATACTTCAGGAAGTGATGGCTGATCCATATGTCGCATCGGATGGGTACACATATGACCGGAAGGCGATCGAGCTGTGGCTAAGTATGAATGACAAGTCCCCTATGACAAATCTGAGATTGCCTCACAAGAGCCTTATACCAAATCACTCGCTTCGTTCTGCAATCATCGACTGGAG ] [+] EMBL AK105657 [ GATAAGGAAAAAAGAGAGAGAAGAACAGGAAGTTGCCAGAAGAGAAGATCAATTAAGAAATGAAAATGCTGAAAGTGAAGCAACAAAACAGAGTAATGGCAATCAGGAAGGTGATGAGAATAAGACAGGAGAGAGGATTTTCGTGCGCTGTTTTGACGAGTATAACAGGTATACCTGGGAGGAGATAAAAGCATCGACTTTGTCACTGTCTGAGGATCTTATGATTGGCAGGGGATCATATGGTACAGTGTACAAGGCTAAGTTTCATCATACAGTTGCAGCAGTAAAAGTTCTGAACTCCCCTGAAGGCTGTGGAACTCAGCAATCACAACAGGAGCTTGAGGTCCTAGGTAAAATCCGGCACCCTCACTTGCTCCTGATGCTAGGTGCATGCCCTGAGCATGGTTGCTTGGTCTACGAATTCATGGAAAATGGCAGCTTGGATGACATGCTGCAACGGAGAAATAATACACCGCCATTGACCTGGTTTGACCGTTTCAGAATTGCTTGGGAGGTTGCAACTGCTCTTATGTTCCTTCACAGTTCCAAACCAGAGCCTATCATACACCGGGATCTGAAGCCCGCAAACATATTGCTTGACAGGAACTTGGTTAGCAAGATAGGTGATGTAGGTCTATCAACTTTGCTTCCAAGTATGGATCAGTACCTGTCCACAATGATCAAGAACACTGCT CCAGTGGGCACTTTCTGTTACATAGACCCAGAGTATCAGAGAAGTGGCGTGGTCTCCATGAAGTCCGATGTTTATGCTCTAGGGATCGTGATCTTGCAATTGCTGACAGCGAAGTCACCAATGGGGATTGCCCATGTTGTGGAGACTGCACTAGAAGATGGACACTTCGTGGACATTCTGGATGCAGCTGCTGGGCAGTGGCCTTTGAATGAGGCACAAGAATTGGCTTTCCTAGCCCTAAAGTGTGCCGAAATGAGGCGCAGAGACCGGCCCGACTTGAGCGATCATGTTCTTCCAGCATTGGAGCGGCTGAAGGATGTTGCAACCAAGGCCAGAGAAATGGCTTTTAATGGCCACCAAACAGCACCTCCAAGTCACTTCATTTGCCCCATACTTCAGGAAGTGGTGGCTGATCCATATGTCGCATCGGATGGGTACACATATGACCGGAAGGCGATCGAGCTGTGGCTAAGTATGAATGACAAGTCCCCTATGACAAATCTGAGATTGCCTCACAAGAGCCTTATACCAAATCACTCGCTTCGTTCTGCAATCATCGACTGGAGAACAAAGAGTTAGTAGCTGGTACACATTCTGGCCTGCATTCTCCAGAATGTAGCAGTTGATGATTGATTTTCTTCTCAAGGTGTAAATTTTTTGCAGATCTCATGTAGAAGTAGTCTTCATGTTGG ] [-] EMBL CB661736 [ TTAGCAAGATAGGTGATGTAGGTCTATCAACTTTGCTTCCAAGTATGGATCAGTACCTGTCCACAATGATCAAGAACACTGCTCCCAGTGGGCACTTTCTGTTACATAGACCCAGAGTATCAGAGAAGTGGCGTGGTCTCCATGAAGTCCGATGTTTATGCTCTAGGGATCGTGATCTTGCAATTGCTGACAGCGAAGTCACCAATGGGGATTGCCCATGTTGTGGAGACTGCACTAGAAGATGGACACTTCGTGGACATTCTGGATGCAGCTGCTGGGCAGTGGCCTTTGAATGAGGCACAAGAATTGGCTTTCCTAGCCCTAAAGTGTGCCGAAATGAGGCGCAGAGACCGGCCCGACTTGAGCGATCATGTTCTTCCAGCATTGGAGCGGCTGAAGGATGTTGCAACCAAGGCCAGAGAAATGGCTTTTAATGGCCACCAAACAGCACCTCCAAGTCACTTCATTTGCCCCATACTTCAGGAAGTGATGGCTGATCCATATGTCGCATCGGATGGGTACACATATGACCGGAAGGCGATCGAGCTGTGGCTAAGTATGAATGACAAGTCCCCTATGACAAATCTGAGATTGCCTCACAAGAGCCTTATACCAAATCACTCGCTTCGTTCTGCAATCATCGACTGGAGAACAAAGAGTTAGTAGCTGGTACACATTCTGGCCTGCATTCTCCAGAATGTAGCAGTTGATGATTGATTTTCTTCTCAAGGTGTAAATTTTTTGCAGATCTCATGTAGAAGTAGTCTTCATGTTGGTTCC AAAAAGGAAAAATAAAATAAAATAAGTGGTGTTCATAAAaaaaaaga ] [-] EMBL CB663242 [ GTGGAGACTGCACTAGAAGATGGACACTTCGTGGACATTCTGGATGCAGCTGCTGGGCAGTGGCCTTTGAATGAGGCACAAGAATTGGCTTTCCTAGCCCTAAAGTGTGCCGAAATGAGGCGCAGAGACCGGCCCGACTTGAGCGATCATGTTCTTCCAGCATTGGAGCGGCTGAAGGATGTTGCAACCAAGGCCAGAGAAATGGCTTTTAATGGCCACCAAACAGCACCTCCAAGTCACTTCATTTGCCCCATACTTCAGGAAGTGATGGCTGATCCATATGTCGCATCGGATGGGTACACATATGACCGGAAGGCGATCGAGCTGTGGCTAAGTATGAATGACAAGTCCCCTATGACAAATCTGAGATTGCCTCACAAGAGCCTTATACCAAATCACTCGCTTCGTTCTGCAATCATCGACTGGAGAACAAAGAGTTAGTAGCTGGTACACATTCTGGCCTGCATTCTCCAGAATGTAGCAGTTGATGATTGATTTTCTTCTCAAGGTGTAAATTTTTTGCAGATCTCATGTAGAAGTAGTCTTCATGTTGGTTCC AAAAATAAAAAATAAAATAAAATAAGTGGTGTTCATAAAGAGGTTCAAGTTGTGCAGCTTTATCAAATAGTAGTAGTAGAAATTGTTTCCTACTAGCTCATAGGCAAACACCTTCCACCTCACTGTCTTAGTGAATGGTGAACAATTATTTTTTTCTCCTTTGCCATTCATAATGATGTGTTGTAAGCTTGTAATTAGTGCTCTCAACATTTGATGTGA TTGTAGGAAATCTTAATGAAAATTCAGTATGAA ] [-] EMBL CB676242 [ CTGGGCAGTGGCCTTTGAATGAGGCACAAGAATTGGCTTTCCTAGCCCTAAAGTGTGCCGAAATGAGGCGCAGAGACCGGCCCGACTTGAGCGATCATGTTCTTCCAGCATTGGAGCGGCTGAAGGATGTTGCAACCAAGGCCAGAGAAATGGCTTTTAATGGCCACCAAACAGCACCTCCAAGTCACTTCATTTGCCCCATACTTCAGGAAGTGATGGCTGATCCATATGTCGCATCGGATGGGTACACATATGACCGGAAGGCGATCGAGCTGTGGCTAAGTATGAATGACAAGTCCCCTATGACAAATCTGAGATTGCCTCACAAGAGCCTTATACCAAATCACTCGCTTCGTTCTGCAATCATCGACTGGAGAACAAAGAGTTAGTAGCTGGTACACATTCTGGCCTGCATTCTCCAGAATGTAGCAGTTGATGATTGATTTTCTTCTCAAGGTGTAAATTTTTTGCAGATCTCATGTAGAAGTAGTCTTCATGTTGGTTCC AAAAATAAAAAATAAAATAAAATAAGTGGTGTTCATAAAGAGGTTCAAGTTGTGCAGCTTTATCAAATAGTAGTAGTAGAAATTGTTTCCTACTAGCTCATAGGCAAACACCTTCCACCTCACTGTCTTAGTGAATGGTGAACAATTATTTTTTTCTCCTTTGCCATTCATAATGATGTGTTGTAAGCTTGTAATTAGTGCTCTCAACATTTGATCTGA TTGTAGGAAATCTTAATGAAAATTCAGTATG ] [-] EMBL CB663208 [ TGGGCAGTGGCCTTTGAATGAGGCACAAGAATTGGCTTTCCTAGCCCTAAAGTGTGCCGAAATGAGGCGCAGAGGCCGGCCCGACTTGAGCGATCATGTTGTTCCAGCATTGGAGCGGCTGAAGGATGTTGCAACCAAGGCCAGAGAAATGGCTTTTAATGGCCACCAAACAGCACCTCCAAGTCACTTCATTTGCCCCATACTTCAGGAAGTGATGGCTGATCCATATGTCGCATCGGATGGGTACACATATGACCGGAAGGCGATCGAGCTGTGGCTAAGTATGAATGACAAGTCCCCTATGACAAATCTGAGATTGCCTCACAAGAGCCTTATACCAAATCACTCGCTTCGTTGTGCAATCATCGTCTGGAGAACAAAGAGTTAGTAGCTGGTACACATTCTGGCCTGCATTCTCCAGAATGTAGCAGTTGATGATTGATTTTCTTCTCAAGGTGTAAATTTTTTGCAGATGTCATGTAGAAGTAGTTTTCATGTTGGTTCCTAAAAATGAAAAATAAAATAAAATAAGTGGTGTTCATAAAGAGGTTCAAGTTGTGCAGCTTTATCAAATAGTAGTAGTAGAAATTGTTTCCTATTAGCTCATAGGCAAACACCTTCCACCTCACTGTATTAGTGAATGGTGACCAATTATTTTTTTCTCCTTTGCCATTCATAATGATGTGTTGTAAGATTGTAATTAGTGTTTTCAACATTTGATGTGA TTGTAGGAAATGTTAACGAAAATTCAGTATGAAGCTTGGGTAGAGTAAAAGAAAAAAAGCTTGCGGGGGGG] [-] EMBL CB634276 [ ATTGGCTTTCCTAGCCTTAAAGTGTGCCGAAATGAGGCGCAGAGACCGGCCCGACTTGAGCGATCATGTTCTTCCAGCATTGGAGCGGCTGAAGGATGTTGCAACCAAGGCCAGAGAAATGGCTTTTAATGGCCACCAAACAGCACCTCCAAGTCACTTCATTTGCCCCATACTTCAGGAAGTGATGGCTGATCCATATGTCGCATCGGATGGGTACACATATGACCGGAAGGCGATCGAGCTGTGGCTAAGTATGAATGACAAGTCCCCTATGACAAATCTGAGATTGCCTCACAAGAGCCTGATACCAAATCACTCGCTTCGTTCTGCAATCATCGACTGGAGAACAAAGAGTTAGTAGCTGGTACACATTCTGGCCTGCATTCTCCAGAATGTAGCAGTTGATGATTGATTTTCTTCTCAAGGTGTAAATTTTTTGCAGATCTCATGTAGAAGTAGTCTTCATGTTGGTTCC AAAAATAAAAAATAAAATAAAATAAGTGGTGTTCATAAAGAGGTTCAAGTTGTGCAGCTTTATCAAATAGTAGTAGTAGAAATTGTTTCCTACTAGCTCATAGGCAAACACCTTCCACCTCACTGTTTTAGTGAATGGTGAACAATTATTTTTTGGTCCTTTGCCATTCATAATGATGTGTTGTAAGCTTGTAATTAGTGCTCTCAACATTTGATCTGATTTTTAGG ATCTTAATGAAAAT ] consensusID : consensus_13222#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 720 fasta sequence [CCTCCCCTCCTCTCATCGCCACTCTCCTCGTCTCCTCCATGCCTCAGAGTGATTAGTTGAGAGGAGGAATCAAGAATCGAGGGAGAGGGTGAGGGAGATGGAGATCGAGGAGGCGGGCGGCGCCGGGGAGGATGAGCTGGAAATGGAGGCTCCGAGCGTGAGCACGGTGGCGATTGCGGTGAACGGGAGCAGGAACAGCAAGCACGCACTCAAGTGGGCTCTCGACAAGTTCGTCCCCGAAGGGAAGGTCCTCTTCCAGATCTTGCATGTCCGCCCCACCATCAAGATGGTGCCAACTCCAAGTGAGACATTTCTTCCTCTTGATTCTCTGAATTTTCAGTTCTTGCAGTTTACAGGGATGGGGGGAAAATATGCAGTCTTTGGAGGCAATGAACCTTGTTGTGAAGTGACTAGTCTCTTGGATGAGTTTTTTTTTTTTTTAATTTCCTTTTTCTTAAAGAGGGGAATATCAAATACTATGGTTTGTTGTTTAGGAAGTTTTGATCGGAGGAGGTGTCATTTGATACATCAGAGAGGGGAATTAAAATGATAGGTTTTACTTGGTCATTGCCACCAAATGTGGAATTCGTTTCACAAAGCTGCATAGACTAGCCAAATACAATGCACATTGTCGTTGTTGCCTACTACTACCCAACCCAATTGATGAGTGTGAAACTTGAGCTCTTGATTATTTTTTTTTTAAAAAAAATCTGATTTGCG] [+] EMBL CB627873 [CCTCCCCTCCTCTCATCGCCACTCTCCTCGTCTCCTCCATGCCTCAGAGTGATTAGTTGAGAGGAGGAATCAAGAATCGAGGGAGAGGGTGAGGGAGATGGAGATCGAGGAGGCGGGCGGCGCCGGGGAGGATGAGCTGGAAATGGAGGCTCCGAGCGTGAGCACGGTGGCGATTGCGGTGAACGGGAGCAGGAACAGCAAGCACGCACTCAAGTGGGCTCTCGACAAGTTCGTCCCCGAAGGGAAGGTCCTCTTCCAGATCTTGCATGTCCGCCCCACCATCAAGATGGTGCCAACTCCAAGTGAGACATTTCTTCCTCTTGATTCTCTGAATTTTCAGTTCTTGCAGTTTACAGGGATGGGGGGAAAATATGCAGTCTTTGGAGGCAATGAACCTTGTTGTGAAGTGACTAGTCTCTTGGATGAGTTTTTTTTTTTTTTAATTTCCTTTTTCTTAAAGAGGGGAATATCAAATACTATGGTTTGTTGTTTAGGAAGTTTTGATCGGAGGAGGTGTCATTTGATACATCAGAGAGGGGAATTAAAATGATAGGTTTTACTTGGTCATTGCCACCAAATGTGGAATTCGTTTCACAAAGCTGCATAGACTAGCCAAATACAATGCACATTGTCGTTGTTGCCTACTACTACCCAACCCAATTGATGAGTGTGAAACTTGAGCTCTTGATTATTTTTTTTTTAAAAAAAATCTGATTTGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13222#0 CTCTAGCTTGACTCTATACCCGTCGTCTTCAGTCTCCTCCTCCCCTCTCATCGCCACTCT 60 consensus_13222#1 -----------------------------------CCTCCCCTCCTCTCATCGCCACTCT 25 ***** * ***************** consensus_13222#0 CCTCGTCTCCTCCATGCCTCAGAGTGATTAGTTGAGAGGAGGAATCAAGAATCGAGGGAG 120 consensus_13222#1 CCTCGTCTCCTCCATGCCTCAGAGTGATTAGTTGAGAGGAGGAATCAAGAATCGAGGGAG 85 ************************************************************ consensus_13222#0 AGGGTGAGGGAGATGGAGATCGAGGAGGCGGGCGGCGCCGGGGAGGATGAGCTGGAAATG 180 consensus_13222#1 AGGGTGAGGGAGATGGAGATCGAGGAGGCGGGCGGCGCCGGGGAGGATGAGCTGGAAATG 145 ************************************************************ consensus_13222#0 GAGGCTCCGAGCGTGAGCACGGTGGCGATTGCGGTGAACGGGAGCAGGAACAGCAAGCAC 240 consensus_13222#1 GAGGCTCCGAGCGTGAGCACGGTGGCGATTGCGGTGAACGGGAGCAGGAACAGCAAGCAC 205 ************************************************************ consensus_13222#0 GCACTCAAGTGGGCTCTCGACAAGTTCGTCCCCGAAGGAAAGGTCCTCTTCCAGATCTTG 300 consensus_13222#1 GCACTCAAGTGGGCTCTCGACAAGTTCGTCCCCGAAGGGAAGGTCCTCTTCCAGATCTTG 265 ************************************** ********************* consensus_13222#0 CATGTCCGCCCCACCATCAAGATGGTGCCAACTCCAATGGGCAATTTCATTCCAATCACA 360 consensus_13222#1 CATGTCCGCCCCACCATCAAGATGGTGCCAACTCCAAGTGAGA----CATTTCTTCCTCT 321 ************************************* * * **** * * * consensus_13222#0 CAAGTGCGTGAAGACGTAGCAACTGCATACAAGAAAGAAGTGGAATGGCAAGCAAACAAT 420 consensus_13222#1 TGATTCTCTGAATTTTCAGTTCTTGCAGTTTACAGGGATGGGGGG----------AAAAT 371 * * **** ** **** * * ** * ** * *** consensus_13222#0 ATGTTGCTTCCTTACAAGAAGATGTGTGCTCAGAGAAAGGTAGAAGCTGAAGCTGTTTTA 480 consensus_13222#1 ATGCAGTCTTTGGAGGCAATGAACCTTGTTGTGAAGTGACTAGTCTCTTGGATGAGTTTT 431 *** * * * * ** ** * ** *** ** *** consensus_13222#0 CTCGAATCTGACGATGTGCCTACTGCTATAAGCGAAGAAATCAGCAAATTCAGTGTCTGC 540 consensus_13222#1 TTT--TTTTTTTAATTTCCTTTTTCTTAAAGAGGGGAATATCA--AATACTATGGTTTGT 487 * * * ** * * * * ** * * * **** ** * ** ** consensus_13222#0 AAGTTAGTTTTAGGTTCTTCTAGCAGCATATTCCGAAGGAAAAACAAAGGAAGTAAGACT 600 consensus_13222#1 TGTTTAGG---AAGTTTTGATCGGAGGAGGTGTCATTTGATACATCAGAGAGG-GGAATT 543 **** * *** * * * ** * * * ** * * * ** * * * consensus_13222#0 GCGACCAAAATCTGTGAGTGCATTCCAAGCTTCTGCACAGCATACGTTGTCTCAAAAGGA 660 consensus_13222#1 AAAATGATAGGTTTTACTTGGTCATTGCCACCAAATGTGGAATTCGTT-TCACAAAGCTG 602 * * * * * ** * ** **** ** **** consensus_13222#0 AAACTATCATCTGTGCACTCAGCTACATCTGATGCCATCGGAACACCTGAATCCATTTCT 720 consensus_13222#1 CATAGACTAGCCAAATACAATGC-ACAT-TGTCGTTGTTGCC-TACTACTACCCAACCCA 659 * * * * ** ** **** ** * * * ** * *** * consensus_13222#0 TCTTCAACTGTTTCATCCCCAAGCTCTAGAAGCTTTTCATCCAGTGTACCCTCAGAATGG 780 consensus_13222#1 A-TTGATGAGTGTGAAACTTGAGCTCTTGATTATTTTTTTTTTAAAAAAAATCTGATTTG 718 ** * ** * * * ****** ** **** * * ** ** * * consensus_13222#0 GGAGACACATATGGGTCAGCAAATGTGTCATTCCACCAGCCATCTCTGTCATCTCAGCGT 840 consensus_13222#1 CG---------------------------------------------------------- 720 * consensus_13222#0 GACCAAGCAATTGCAAACATGAATAAGTTATCCAACAGGAGAGCTAGCCCTTCAGGCAGT 900 consensus_13222#1 ------------------------------------------------------------ consensus_13222#0 GGTGGGAGTGAGATCTCCAACCATGATGATACAGTCCTGACAAGTTCACACTCGATCAAT 960 consensus_13222#1 ------------------------------------------------------------ consensus_13222#0 TCAGAAACACGGTTCAGTAGCAGCAGCAGTGGGAATTCTATCTATAAGAGCTTCAATAGA 1020 consensus_13222#1 ------------------------------------------------------------ consensus_13222#0 GATCGTTCATTTGATAACTCTGATCAGGCATCCGTGTCAGATATGGCAACAAATCTGAAA 1080 consensus_13222#1 ------------------------------------------------------------ consensus_13222#0 CATTCTCATGACCAGGAGTATCTAAAGCTTGAGATTGAGAGGCTGAGGGTTAAACTACGG 1140 consensus_13222#1 ------------------------------------------------------------ consensus_13222#0 CATCTTCAGAAGCTTAATGAGTTAGCTCAGAAAGAATCATTGGACGCCAATCAGAAATTA 1200 consensus_13222#1 ------------------------------------------------------------ consensus_13222#0 CATAAGTTGGGCATCCAGGACATTGAGGATGAAATTAAGCTTAAAGAGACAGAACTGACA 1260 consensus_13222#1 ------------------------------------------------------------ consensus_13222#0 GAAGAAAAGGTAAGGAGATTGATAAGGAAAAAAGAGAGAGAAGAACAGGAAGTTGCCAGA 1320 consensus_13222#1 ------------------------------------------------------------ consensus_13222#0 AGAGAAGATCAATTAAGAAATGAAAATGCTGAAAGTGAAGCAACAAAACAGAGTAATGGC 1380 consensus_13222#1 ------------------------------------------------------------ consensus_13222#0 AATCAGGAAGGTGATGAGAATAAGACAGGAGAGAGGATTTTCGTGCGCTGTTTTGACGAG 1440 consensus_13222#1 ------------------------------------------------------------ consensus_13222#0 TATAACAGGTATACCTGGGAGGAGATAAAAGCATCGACTTTGTCACTGTCTGAGGATCTT 1500 consensus_13222#1 ------------------------------------------------------------ consensus_13222#0 ATGATTGGCAGGGGATCATATGGTACAGTGTACAAGGCTAAGTTTCATCATACAGTTGCA 1560 consensus_13222#1 ------------------------------------------------------------ consensus_13222#0 GCAGTAAAAGTTCTGAACTCCCCTGAAGGCTGTGGAACTCAGCAATTACAACAGGAGCTT 1620 consensus_13222#1 ------------------------------------------------------------ consensus_13222#0 GAGGTCCTAGGTAAAATCCGGCACCCTCACTTGCTCCTGATGCTAGGTGCATGCCCTGAG 1680 consensus_13222#1 ------------------------------------------------------------ consensus_13222#0 CATGGTTGCTTGGTCTACGAATTCATGGAAAATGGCAGCTTGGATGACATGCTGCAACGG 1740 consensus_13222#1 ------------------------------------------------------------ consensus_13222#0 AGAAATAATACACCGCCATTGACCTGGTTTGACCGTTTCAGAATTGCTTGGGAGGTTGCA 1800 consensus_13222#1 ------------------------------------------------------------ consensus_13222#0 ACTGCTCTTATGTTCCTTCACAGTTCCAAACCAGAGCCTATCATACACCGGGATCTGAAG 1860 consensus_13222#1 ------------------------------------------------------------ consensus_13222#0 CCCGCAAACATATTGCTTGACAGGAACTTGGTTAGCAAGATAGGTGATGTAGGTCTATCA 1920 consensus_13222#1 ------------------------------------------------------------ consensus_13222#0 ACTTTGCTTCCAAGTATGGATCAGTACCTGTCCACAATGATCAAGAACACTGCTCCAGTG 1980 consensus_13222#1 ------------------------------------------------------------ consensus_13222#0 GGCACTTTCTGTTACATAGACCCAGAGTATCAGAGAAGTGGCGTGGTCTCCATGAAGTCC 2040 consensus_13222#1 ------------------------------------------------------------ consensus_13222#0 GATGTTTATGCTCTAGGGATCGTGATCTTGCAATTGCTGACAGCGAAGTCACCAATGGGG 2100 consensus_13222#1 ------------------------------------------------------------ consensus_13222#0 ATTGCCCATGTTGTGGAGACTGCACTAGAAGATGGACACTTCGTGGACATTCTGGATGCA 2160 consensus_13222#1 ------------------------------------------------------------ consensus_13222#0 GCTGCTGGGCAGTGGCCTTTGAATGAGGCACAAGAATTGGCTTTCCTAGCCCTAAAGTGT 2220 consensus_13222#1 ------------------------------------------------------------ consensus_13222#0 GCCGAAATGAGGCGCAGAGACCGGCCCGACTTGAGCGATCATGTTCTTCCAGCATTGGAG 2280 consensus_13222#1 ------------------------------------------------------------ consensus_13222#0 CGGCTGAAGGATGTTGCAACCAAGGCCAGAGAAATGGCTTTTAATGGCCACCAAACAGCA 2340 consensus_13222#1 ------------------------------------------------------------ consensus_13222#0 CCTCCAAGTCACTTCATTTGCCCCATACTTCAGGAAGTGATGGCTGATCCATATGTCGCA 2400 consensus_13222#1 ------------------------------------------------------------ consensus_13222#0 TCGGATGGGTACACATATGACCGGAAGGCGATCGAGCTGTGGCTAAGTATGAATGACAAG 2460 consensus_13222#1 ------------------------------------------------------------ consensus_13222#0 TCCCCTATGACAAATCTGAGATTGCCTCACAAGAGCCTTATACCAAATCACTCGCTTCGT 2520 consensus_13222#1 ------------------------------------------------------------ consensus_13222#0 TCTGCAATCATCGACTGGAGAACAAAGAGTTAGTAGCTGGTACACATTCTGGCCTGCATT 2580 consensus_13222#1 ------------------------------------------------------------ consensus_13222#0 CTCCAGAATGTAGCAGTTGATGATTGATTTTCTTCTCAAGGTGTAAATTTTTTGCAGATC 2640 consensus_13222#1 ------------------------------------------------------------ consensus_13222#0 TCATGTAGAAGTAGTCTTCATGTTGGTTCCAAAAATAAAAAATAAAATAAAATAAGTGGT 2700 consensus_13222#1 ------------------------------------------------------------ consensus_13222#0 GTTCATAAAGAGGTTCAAGTTGTGCAGCTTTATCAAATAGTAGTAGTAGAAATTGTTTCC 2760 consensus_13222#1 ------------------------------------------------------------ consensus_13222#0 TACTAGCTCATAGGCAAACACCTTCCACCTCACTGTCTTAGTGAATGGTGAACAATTATT 2820 consensus_13222#1 ------------------------------------------------------------ consensus_13222#0 TTTTTCTCCTTTGCCATTCATAATGATGTGTTGTAAGCTTGTAATTAGTGCTCTCAACAT 2880 consensus_13222#1 ------------------------------------------------------------ consensus_13222#0 TTGATCTGATTGTAGGAAATCTTAATGAAAATTCAGTATGAAGCTTGGGTAGAGTAAAAG 2940 consensus_13222#1 ------------------------------------------------------------ consensus_13222#0 AAAAAAAGCTTGCGGGGGGG 2960 consensus_13222#1 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||