These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13254#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 3294 fasta sequence [GTTCGGAGAGGCCTCGCTCCTCCCGCGCCGCGCGTGCGCGAAACCCTAGCTTTGAGGTGGAGGTGGTGGTGGAGGAGGAGGAGGAGGATGAGGAGGAAGCGGCTGTGGCTGCGGCTAGGCGTGTCAAGAGGGAGGTCGCGGATGACCTGAACGGGGAGCCCGCGGAGGAGGAGGATGACGACGAGGAGGAGGTG-GTGGTGGAGGAGGACGAGGAGGTGGTTGTCGCCTCCGACGAGGAGGGCGGCGACGGGGAGGCGGACGGCGGCGGCGAAGTGGCTGTGGCCTTCGAGCCGCGCACGCTGGAGGAGGCCCTCGTTCCGCGCGTGGGTGCGGTGTTCGACTCTGTGGACGAGGCCTTCTCGCTCTACAAGACCTACGCCTACCGCACAGGCTTCCACGCGGTGCGCCGGACCTGCCACAACTACGAGGGGCTCCGCTACCGCTCTACCTTTACCTGCACTCATGGTGGCAAGGCCCGGGCTGACGCCAGCCCGTCTGATGGCTCAGGCGCCCGC-TACCCACTCCGCAGCAGC-AAGCGTGCGGCCAACGCCCA-GGAGAAGAGGGCTCGTCGCGGTGCGGCTGAGAAGACAGGATGC-AAGGCGATG-TTGATC-ATCCG-TGACAGGCGGGCGGA-TGATAAGTGGAAGGTGGAGTTCGTTGAGTTGGAGCATAACCATCCGTGTACACCTGACA-TGGTGA-GGT-TCTTGAAGGCTTACAGGGAAATGCCTGAC-TCAGC-TAAGAAGAAGGCCAAGATTTCTGATGAGATGGATGATAGGGTGGAGAAATCGCTGAGCGAGATTGCTGAGACCAGGAAGTTCCCAACTCGGCCCAAGCGGAGTGTTGGTGGTGGAGCCTCTGTTGGTGGGTTCAGGTTTAGTAGAAGCGACAGTTTTGTGCAGCGGTTTGGGGATGATGACCTTATTGCACTGAAGAAGTTTATTGAGGCGATGCAGCGCAAGAAGCCAAACTTTATCCACTACTGGGATCTTGATCAGGAAACTCATGTGAAGAATTTTTTCTGGACTGACTCGAGGTCCCAGGCACAATACCGTTATTTTGGTGACGTCATTACACTTGACGTGATGTATTTACAGCATTCGCGTGCTAGCCTTCCATTGGCCACAATCCTTGGGGTGAACAACCATGGTCACCTTGTTCTGCTTGGTTGTGGTCTGCTTTGCAGTGACAAGAAGGAAAACTATGTTTGGCTGTTGAAGAGGTGGTTGGGCTGTATGAATGGCAAGCCACCAGAGGCGATCACAACCACCTATTCAGATGCCGTTGCAGAAGCTGTGGCTGAGGTGTTGCCAAATGCGAGGCACCGTTTCTGTTTTTGGCATATCTTGAAAAAACTCCAAGAGAATGTCGGACGCACAAATGAGAAAGAGGCAATTTCCTTGAGATTCAAGGAGGTTGTTTATGACACAGTCACACTTACAGACTTTGAGAGAGAGTGGGGGCCCATGGTTGAGCAGTACAAGCTCAAAGACAATGACTGGTTCTCTGCTTTGTACAGCTGCCGGAAACAATGGGCACCTGGTTATGTCAACCATTCATTTTGGGCTGGCACTTCTGCTATTAGGAAGGTCGAGAAACCAGATCCATACTTTGATGGCGTGGTGACAACTAAAACTACCCTACCAGTTTTCCTTGAGCAATACGAGACTACTCTGAGAGGGAAGCTGGAAAGGGAGGCATATGATGATTTGCGCTCCTATTACTCTAGGCTCACTTCGCTGTCGGGATTACCCTTTGAGGAACAACTCATGGAGCTCTACACAGTACCTATGTTCCAAGCATTCCAAGACGAGATCAAACAATTAATACACGTGATTTGTAAAGAGGTAGACAGGAGTGGAAATTCAATTACCTACATGGCTAGTGAGTTGATACAGGGAAAGAAGGTCAACTATACAGTTGTCTACAACAGTGCTGACAAGGATGTCTGGTGCATTTGTCGCTCCTTTCCGTCACGAGGCATCCTTTGCAGCCATGCTCTCTCCGTTCTTAAGCAAGAGAATGTGTTAATGCTGCCATCAAAGTATATCCTCAATCGTTGGAGAAAGGATTTTAGAGTACTTCATGCAACTGCAAGTTCCAGTTCTATATCATCTGATAGAGATTTGAGCATTTTCAATGATCTCTATGTCCGTGGCCACGAGTATTTAGAAGATGTCATTGACATTGGAGCCAGAGAACCTGAGCTCAAAGAGTTTGTGTTGACAGTTATGAAGGAAGCGAAGGACAAACTAGTTAGGCCTGACCATATTCATCAAGCTGATCAGCGGGTTGATGTAAATATGTCAGTGACTGGCCAAGTGTCCGCAGATAGAGGAGTAGATGTGAACATTTCATCAAATAGCACATCCCTGATTCAGGGAGACAGAAGGGTTGATACAAATGTGACCTCAAACACCACAGCCATGGTTCATGGTCATGGGGATTCCATGACATCAAACACCACAGCTATGATTCGTGGGGATAGAAGAGTTGAGATGAAGATCCCAACGCCCCACCTTATTCATGGAGACGGAAGAATTGACATGAACATGGCATCCCCTCTCTTGATGCAGAGGGACAGAAGAGTTGACATGAACATGGCCTCCCCACACATGATACAGGGGGACAGAAGAGTTGATATGAACTTGGCATCACCACACTTTATACAAAGCGACAGAAGGGTTGATATGAACCTGGCATCTTCGCATCTGATACAAGGGGACAGAAGAGTTGATATGAATATGACATCCCCTCACTTGATACAAGGTGACACCAGAGTGGATATGAATATGGTATCTACTGCTCAGAATGGAATGCACTCTTTTGATTTGGTGAATGTGAACCTAGAAAGTGGTCCTTTGCCAATGGCTGCAACTGATTTCATGCAAATGCATCAGCACCCACCCGTTTACCATCCAAAACAACTCCTCAATATGAGAGATCAGGTGATGGACACAAATAAGAGGCCCAATATGGAAACAAACACATACTTTATGGGAGGTGGAATGCATGTGGGATAGTTTCTTGTCTAGAGACCCACTATGTAATCTTTTCTGTTTGGAAAGGAGATGCCTTTCCTTATTTTATATTGATATGTATGTTCCTACAGCAGGCAGCAACTAATCAATTAGGTTGTAGTAATTGCAGATTAATCTTGCAGTGCTGGTAGCTTTGTTGTTGTATCCTTCTCTGTTCGGCAGCTGTAGCAATTACTTGCTATTGTCTTGTACATAAGATAGTAGAATGCAACAACCTTTTCTTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK101625 [GTTCGGAGAGGCCTCGCTCCTCCCGCGCCGCGCGTGCGCGAAACCCTAGCTTTGAGGTGGAGGTGGTGGTGGAGGAGGAGGAGGAGGATGAGGAGGAAGCGGCTGTGGCTGCGGCTAGGCGTGTCAAGAGGGAGGTCGCGGATGACCTGAACGGGGAGCCCGCGGAGGAGGAGGATGACGACGAGGAGGAGGTG GTGGTGGAGGAGGACGAGGAGGTGGTTGTCGCCTCCGACGAGGAGGGCGGCGACGGGGAGGCGGACGGCGGCGGCGAAGTGGCTGTGGCCTTCGAGCCGCGCACGCTGGAGGAGGCCCTCGTTCCGCGCGTGGGTGCGGTGTTCGACTCTGTGGACGAGGCCTTCTCGCTCTACAAGACCTACGCCTACCGCACAGGCTTCCACGCGGTGCGCCGGACCTGCCACAACTACGAGGGGCTCCGCTACCGCTCTACCTTTACCTGCACTCATGGTGGCAAGGCCCGGGCTGACGCCAGCCCGTCTGATGGCTCAGGCGCCCGC TACCCACTCCGCAGCAGC AAGCGTGCGGCCAACGCCCA GGAGAAGAGGGCTCGTCGCGGTGCGGCTGAGAAGACAGGATGC AAGGCGATG TTGATC ATCCG TGACAGGCGGGCGGA TGATAAGTGGAAGGTGGAGTTCGTTGAGTTGGAGCATAACCATCCGTGTACACCTGACA TGGTGA GGT TCTTGAAGGCTTACAGGGAAATGCCTGAC TCAGC TAAGAAGAAGGCCAAGATTTCTGATGAGATGGATGATAGGGTGGAGAAATCGCTGAGCGAGATTGCTGAGACCAGGAAGTTCCCAACTCGGCCCAAGCGGAGTGTTGGTGGTGGAGCCTCTGTTGGTGGGTTCAGGTTTAGTAGAAGCGACAGTTTTGTGCAGCGGTTTGGGGATGATGACCTTATTGCACTGAAGAAGTTTATTGAGGCGATGCAGCGCAAGAAGCCAAACTTTATCCACTACTGGGATCTTGATCAGGAAACTCATGTGAAGAATTTTTTCTGGACTGACTCGAGGTCCCAGGCACAATACCGTTATTTTGGTGACGTCATTACACTTGACGTGATGTATTTACAGCATTCGCGTGCTAGCCTTCCATTGGCCACAATCCTTGGGGTGAACAACCATGGTCACCTTGTTCTGCTTGGTTGTGGTCTGCTTTGCAGTGACAAGAAGGAAAACTATGTTTGGCTGTTGAAGAGGTGGTTGGGCTGTATGAATGGCAAGCCACCAGAGGCGATCACAACCACCTATTCAGATGCCGTTGCAGAAGCTGTGGCTGAGGTGTTGCCAAATGCGAGGCACCGTTTCTGTTTTTGGCATATCTTGAAAAAACTCCAAGAGAATGTCGGACGCACAAATGAGAAAGAGGCAATTTCCTTGAGATTCAAGGAGGTTGTTTATGACACAGTCACACTTACAGACTTTGAGAGAGAGTGGGGGCCCATGGTTGAGCAGTACAAGCTCAAAGACAATGACTGGTTCTCTGCTTTGTACAGCTGCCGGAAACAATGGGCACCTGGTTATGTCAACCATTCATTTTGGGCTGGCACTTCTGCTATTAGGAAGGTCGAGAAACCAGATCCATACTTTGATGGCGTGGTGACAACTAAAACTACCCTACCAGTTTTCCTTGAGCAATACGAGACTACTCTGAGAGGGAAGCTGGAAAGGGAGGCATATGATGATTTGCGCTCCTATTACTCTAGGCTCACTTCGCTGTCGGGATTACCCTTTGAGGAACAACTCATGGAGCTCTACACAGTACCTATGTTCCAAGCATTCCAAGACGAGATCAAACAATTAATACACGTGATTTGTAAAGAGGTAGACAGGAGTGGAAATTCAATTACCTACATGGCTAGTGAGTTGATACAGGGAAAGAAGGTCAACTATACAGTTGTCTACAACAGTGCTGACAAGGATGTCTGGTGCATTTGTCGCTCCTTTCCGTCACGAGGCATCCTTTGCAGCCATGCTCTCTCCGTTCTTAAGCAAGAGAATGTGTTAATGCTGCCATCAAAGTATATCCTCAATCGTTGGAGAAAGGATTTTAGAGTACTTCATGCAACTGCAAGTTCCAGTTCTATATCATCTGATAGAGATTTGAGCATTTTCAATGATCTCTATGTCCGTGGCCACGAGTATTTAGAAGATGTCATTGACATTGGAGCCAGAGAACCTGAGCTCAAAGAGTTTGTGTTGACAGTTATGAAGGAAGCGAAGGACAAACTAGTTAGGCCTGACCATATTCATCAAGCTGATCAGCGGGTTGATGTAAATATGTCAGTGACTGGCCAAGTGTCCGCAGATAGAGGAGTAGATGTGAACATTTCATCAAATAGCACATCCCTGATTCAGGGAGACAGAAGGGTTGATACAAATGTGACCTCAAACACCACAGCCATGGTTCATGGTCATGGGGATTCCATGACATCAAACACCACAGCTATGATTCGTGGGGATAGAAGAGTTGAGATGAAGATCCCAACGCCCCACCTTATTCATGGAGACGGAAGAATTGACATGAACATGGCATCCCCTCTCTTGATGCAGAGGGACAGAAGAGTTGACATGAACATGGCCTCCCCACACATGATACAGGGGGACAGAAGAGTTGATATGAACTTGGCATCACCACACTTTATACAAAGCGACAGAAGGGTTGATATGAACCTGGCATCTTCGCATCTGATACAAGGGGACAGAAGAGTTGATATGAATATGACATCCCCTCACTTGATACAAGGTGACACCAGAGTGGATATGAATATGGTATCTACTGCTCAGAATGGAATGCACTCTTTTGATTTGGTGAATGTGAACCTAGAAAGTGGTCCTTTGCCAATGGCTGCAACTGATTTCATGCAAATGCATCAGCACCCACCCGTTTACCATCCAAAACAACTCCTCAATATGAGAGATCAGGTGATGGACACAAATAAGAGGCCCAATATGGAAACAAACACATACTTTATGGGAGGTGGAATGCATGTGGGATAGTTTCTTGTCTAGAGACCCACTATGTAATCTTTTCTGTTTGGAAAGGAGATGCCTTTCCTTATTTTATATTGATATGTATGTTCCTACAGCAGGCAGCAACTAATCAATTAGGTTGTAGTAATTGCAGATTAATCTTGCAGTGCTGGTAGCT ] [+] EMBL CB629675 [ GAGGTGCGTGGTGGAGGAGGACGAGGAGGTGGTTGTCGCCTCCGACGAGGAGGGCGGCGACGGGGAGGCGGACGGCGGCGGCGAAGTGGCTGTGGCCTTCGAGCCGCGCACGCTGGAGGAGGCCCTCGTTCCGCGCGTGGGTGCGGTGTTCGACTCTGTGGACGAGGCCTTCTCGCTCTACAAGACCTACGCCTACCGCACAGGCTTCCACGCGGTGCGCCGGACCTGCCACAACTACGAGGGGCTCCGCTACCGCTCTACCTTTACCTGCACTCATGGTGGCAAGGCCCGGGCTGACGCCAGCCCGTCTGATGGCTCAGGCGCCCGC TACCCACTCCGCAGCAGC AAGCGTGCGGCCAACGCCCA GGAGAAGAGGGCTCGTCGCGGTGCGGCTGAGAAGACAGGATGC AAGGCGATG TTGATC ATCCG TGACAGGCGGGCAGA TGATAAGTGGAAGGTGGAGTTCGTTGAGTTGGAGCATAACCATCCGTGTACACCTGACA TGGTGA GGT TCTTGAAGGCTTACAGGGAAATGCCTGAC TCACC TAAGAATAACGCCACGATTTCTGATGAGATGGATGATAGGGTGGAGAAATCGCTGATCGAGATTGCTGACACCAGGAAGTTCCCAACTCGGCCCAATCGGAGTGTTGGTGGTGGAGCCTCTGTTG ] [+] EMBL C27317 [ GCGGCGAAGTGGCTGTGGCCTTCGAGCCGCGCACGCTGGAGGAGGCCCTCNTTCCGCGCGTGGGTGCGGTGTTCGACTCTNTGGACGAGGCCTTCTCGCTCTACAAGACCTACGCCTACCGCACAGGCTTCCACGCGGTGCGCCGGACCTGCCACAACTACGAGGGGCTCCGCTACCGCTCTACCTTTACCTGCACTCATGGTGGCAAGGCCCGGGCTGACGCCAGCCCGTNTNATGGCTCAGGCGCCCGCTTACCCACTCCGCAGCAGCAAAGCNTGCGGCCAACGCCCAGGGAGAAGAGGGCTCGTCGCGGTGCGGCTNAGAAGACAGGATGCAAAGGCGATGTTTGATCAATCCGTTGACAan ] [+] EMBL C27261 [ TGGACGAGGCCTTCTCGCTCTACAAGACCTACGCCTACCGCACAGGCTTCCACGCGGTGCGCCGGACCTGCCACAACTACGAGGGGCTCCGCTACCGCTCTACCTTTACCTGCACTCATGGTGGCAAGGNCCGGGCTGACGCCAGCCCGTCTNATGGCTCAGGCGCCCGC TACCCACTCCGCAGCAGC AAGCGTGCGGCCAACG CCA GGAGAAGAGGGCTCGTCGCGGTGCGGCTGAGAAGACAGGATGC AAGGCGATG TTGATC ATCCG TGACAGGCGGGCGGATTGATAAGTGGAAGGTGGAGTTCGTTTANTTTGGGCATAACCATNCGTGTACACCTGACANTGGTTAGGGTNTTTTAAGGGTTTAAAGGGAAATGCCTNACTTAAGCTTAAGAGGAAG ] [+] EMBL CB651310 [ CCA GGAGAATAGGGCTCGTCGCGGTGCGGCTGAGAAGACAGGATGC AAGGCGATG TTGATC ATCCG TGACAGGCGGGCGGA TGATAAGTGGAAGGTGGAGTTCGTTGAGTTGGAGCATAACCATCCGTGTACACCTGACA TGGTGA GGT TCTTGAAGGCTTACAGGGAAATGCCTGAC TCAGC TAAGAAGAAGGCCAAGATTTCTGATGAGATGGATGATAGGGTGGAGAAATCGCTGAGCGAGATTGCTGAGACCAGGAAGTTCCCAACTCGGCCCAAGCGGAGTGTTGGTGGTGGAGCCTCTGTTGGTGGGTTCAGGTTTAGTAGAAGCGACAGTTTTGTGCAGCGGTTTGGGGATGATGACCTTATTGCACTGAAGAAGTTTATTGAGGCGATGCAGCGCAAGAAGCCAAACTTTATCCACTACTGGGATCTTGATCAGGAAACTCATGTGAAGAATTTTTTCTGGACTGACTCGAGGTCCCAGGCACAATACCGTTATTTTGGTGACGTCATTACACTTGACGTGATGTATTTACAGCATTCGCGTGCTAGCCTTCCATTGGCCACAATCCTTGGGGTGAACAACCATGGTCACCTTGTTCTGCTTGGTTGTGGTCTGCTTTGCAGTGACAAGAAGGAAAACTATGTTTGGCTGTTGAAGAGGTGGTTGGGCTGTATGAATGGCAAGCCACCAGAGGCGATCACAACCACCTATTCAGATGCCGTTGCAGAAGCTGTGGCTGAGGTG ] [+] EMBL CB674736 [ GCGATG CTGATC ATCCG TGACAGGCGGGCGGA TGATAAGTGGAAGGTGGAGTTCGTTGAGTTGGAGCATAACCATCCGTGTACACCTGACA TGGTGA GGT TCTTGAAGGCTTACAGGGAAATGCCTGAC TCAGC TAAGAAGAAGGCCAAGATTTCTGATGAGATGGATGATAGGGTGGAGAAATCGCTGAGCGAGATTGCTGAGACCAGGAAGTTCCCAACTCGGCCCAAGCGGAGTGTTGGTGGTGGAGCCTCTGTTGGTGGGTTCAGGTTTAGTAGAAGCGACAGTTTTGTGCAGCGGTTTGGGGATGATGACCTTATTGCACTGAAGAAGTTTATTGAGGCGATGCAGCGCAAGAAGCCAAACTTTATCCACTACTGGGATCTTGATCAGGAAACTCATGTGAAGAATTTTTTCTGGACTGACTCGAGGTCCCAGGCACAATACCGTTATTTTGGTGACGTCATTACACTTGACGTGATGTATTTACAGCATTCGCGTGCTAGCCTTCCATTGGCCACAATCCTTGGGGTGAACAACCATGGTCACCTTGTTCTGCTTGGTTGTGGTCTGCTTTGCAGTGACAAGAAGGAAAACTATGTTTGGCTGTTGAAGAGGTGGTTGGGCTGTATGAATGGCAAGCCACCAGAGGCGATCACAACCACCTATTCAGATGCCGTTGCAGAAGCTGTGGCTGAGGTGTTGCCAAATGCGAGGCACCGTTTCTGTTTTTGGCATATCTTGAAAAAACTCCAAGAGAATGTCGGA ] [-] EMBL CB651311 [ ACACCACAGCTATGATTCGTGGGGATAGAAGAGTTGAGATGAAGATCCCAACGCCCCACCTTATTCATGGAGACGGAAGAATTGACATGAACATGGCATCCCCTCTCTTGATGCAGAGGGACAGAAGAGTTGACATGAACATGGCCTCCCCACACATGATACAGGGGGACAGAAGAGTTGATATGAACTTGGCATCACCACACTTTATACAAAGCGACAGAAGGGTTGATATGAACCTGGCATCTTCGCATCTGATACAAGGGGACAGAAGAGTTGATATGAATATGACATCCCCTCACTTGATACAAGGTGACACCAGAGTGGATATGAATATGGTATCTACTGCTCAGAATGGAATGCACTCTTTTGATTTGGTGAATGTGAACCTAGAAAGTGGTCCTTTGCCAATGGCTGCAACTGATTTCATGCAAATGCATCAGCACCCACCCGTTTACCATCCAAAACAACTCCTCAATATGAGAGATCAGGTGATGGACACAAATAAGAGGCCCAATATGGAAACAAACACATACTTTATGGGAGGTGGAATGCATGTGGGATAGTTTCTTGTCTAGAGACCCACTATGTAATCTTTTCTGTTTGGAAAGGAGATGCCTTTCCTTATTTTATATTGATATGTATGTTCCTACAGCAGGCAGCAACTAATCAATTAGGTTGTAGTAATTGCAGATTAATCTTGCAGTGCTGGTAGCTTTGTTGTTGTATCCTTCTCTGTTCGGCAGCTGTAGCAATTACTTGCTATTGTCTTGTACATAAGATAGTAGAATGCAACAACCTTTTCTTG ] [-] EMBL CB629676 [ AAGAGTTGAGATGAAGATCCCAACGCCCCCCCTTATTCATGGAGACGGAATAATTGACATGAACATGGCATCCCCTCACTTGATGCAGAGGGACAGAAGAGTTGACATGAACATGGCCTCCCCACACATGATACAGGGGGACAGAAGAGTTGATATGAACTTGGCATCACCACACTTTATACAAAGCGACAGAAGGGTTGATATGAACCTGGCATCTTCGCATCTGATACAAGGGGACAGAAGAGTTGATATGAATATGACATCCCCTCACTTGATACAAGGTGACACCAGAGTGGATATGAATATGGTATCTACTGCTCAGAATGGAATGCACTCTTTTGATTTGGTGAATGTGAACCTAGAAAGTGGTCCTTTGCCAATGGCTGCAACTGATTTCATGCAAATGCATCAGCACCCACCCGTTTACCATCCAAAACAACTCCTCAATATGAGAGATCAGGTGATGGACACAAATAAGAGGCCCAATATGGAAACAAACACATACTTTATGGGAGGTGGAATGCATGTGGGATAGTTTCTTGTCTAGAGACCCACTATGTAATCTTTTCTGTTTGGAAAGGAGATGCCTTTCCTTATTTTATATTGATATGTATGTTCCTACAGCAGGCAGCAACTAATCAATTAGGTTGTAGTAATTGCAGATTAATCTTGCAGTGCTGGTAGCTTTGTTGTTGTATCCTTCTCTGTTCGGCAGTTGTAGCAATAACTTGCTATTGTCTTGTACATAGAATAGTAGAATGCAACACCCTTTTCTTGTCAAAAAAAAAgga ] [+] EMBL CB096331 [ GTTGATATGAATATGACGTCCCCTCACTTGATACAAGGTGACACCAGAGTGGATATGAATATGGTATCTACTGCTCAGAATGGAATGCACTCTTTTGATTTGGTGAATGTGAACCTAGAAGGTGGTCCTTTGCCAATGGCTGCAACTGATTTCATGCAAATGCATCAGCACCCACCCGTTTACCATCCAAAACAACTCCTCAATATGAGAGATCAGGTGATGGACACAAATAAGAGGCCCAATATGGAAACAAACACATACTTTATGGGAGGTGGAATGCATGTGGGATAGTTTCTTGTCTAGAGACCCACTATGTAATCTTTTCTGTTTGGAAAGGAGATGCCTTTCCTTATTTTATATTGATATGTATGTTCCTACAGCAGGCAGCAACTAATCAATTAGGTTGTAGTAATTGCAGATTAATCTTGCAGTGCTGGTAGCTTTGTTGTTGTATCCTTCTCTGTTCGGCAGTTGTAGCAATAACTTGCTATTGTCTTGTACATAAGATAGTAGAATGCAACAACCTTTTC ] [+] EMBL AU085708 [ CATCCCCTCACTTGATACAAGGTGACACCAGAGTGGATATGAATATGGTATCTACTGCTCAGAATGGAATGCACTCTTTTGATTTGGTGAATGTGAACCTAGAAAGTGGTCCTTTGCCAATGGCTGCAACTGATTTCATGCAAATGCATCAGCACCCACCCGTTTACCATCCAAAACAACTCCTCAATATGAGNGATCNGGTGATGGACNCAAATAAG GGCCCAATATGGAAACAAACACATACTTTATGGGAGGTGGAATGCATGTGGGATAGTTTCTTGTCTAGAGACCCNCTATGTAATCTTTTCTGTTTGGAAAGGAGATGCCTTTCCTTATTTTATATTGATATGTATGTTCCTACAGCAGGCAGCAACTAATCAATTAGGTTGTAGTAATTGCAGATTAATCTTGCAGTGCTGGTAGCTTTGTTGTTGTATCCTTCTCTGTTCGGCAGCTGTAGCAATTACTTGCTATTGTCTTGTACATAAGATAGTAGAATGCAACAACCTTTTCTTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU166855 [ CTTTTCTGTTTGGAAAGGANATGCCTTTCCTTATTTTATATTGATATGTATGTTCCTACAGCAGGCAGCAACTAATCAATTAGGTTGTAGTAATTGCAGATTAATCTTGCAGTGCTGGTAGCTTTGTTGTTGTATCCTTCTCTGTTCGGCAGCTGTAGCAATTACTTGCTATTGTCTTGTACATAAGATAGTAGAATGCAACAACCTTTTCTTGTCNCCCGGTAAAAAAAAAAAAAAAAAAAAAAAA ] consensusID : consensus_13254#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 821 fasta sequence [GTAGATGTGAACATTTCATCAAATAGCACATCCCTGATTCAGGGAGACAGAAGGGTTGATACAAATGTGACCTCAAACACCACAGCCATGGTTCATGGTCATGGGGATTCCATGACATCAAACACCACAGCTATGATTCGTGGGGATAGAAGAGTTGAGATGAAGATCCCAACGCCCCACCTTATTCATGGAGACGGAAGAATTGACATGAACATGGCATCCCCTCTCTTGATGCAGAGGGACAGAAGAGTTGACATGAACATGGCCTCCCCACACATGATACAGGGGGACAGAAGAGTTGATATGAACTTGGCATCACCACACTTTATACAAAGCGACAGAAGGGTTGATATGAACCTGGCATCTTCGCATCTGATACAAGGGGACAGAAGAGTTGATATGAATATGACATCCCCTCACTTGATACAAGGTGACACCAGAGTGGATATGAATATGGTATCTACTGCTCAGAATGGAATGCACTCTTTTGATTTGGTGAATGTGAACCTAGAAAGTGGTCCTTTGCCAATGGCTGCAACTGATTTCATGCAAATGCATCAGCACCCACCCGTTTACCATCCAAAACAACTCCTCAATATGAGAGATCAGGTGATGGACACAAATAAGAGGCCCAATATGGAAACAAACACATACTTTATGGGAGGTGGAATGCATGTGGGATAGTTTCTTGTCTAGAGACCCACTATGTAATCTTTTCTGTTTGGAAAGGAGATGCCTTTCCTTATTTTATATTGATATGTATGTTCCTACAGCAGGCAGCAACTAATCAATTAGGTTGTAGTAATTGCAAAAAAAAAAGA] [-] EMBL CB674737 [GTAGATGTGAACATTTCATCAAATAGCACATCCCTGATTCAGGGAGACAGAAGGGTTGATACAAATGTGACCTCAAACACCACAGCCATGGTTCATGGTCATGGGGATTCCATGACATCAAACACCACAGCTATGATTCGTGGGGATAGAAGAGTTGAGATGAAGATCCCAACGCCCCACCTTATTCATGGAGACGGAAGAATTGACATGAACATGGCATCCCCTCTCTTGATGCAGAGGGACAGAAGAGTTGACATGAACATGGCCTCCCCACACATGATACAGGGGGACAGAAGAGTTGATATGAACTTGGCATCACCACACTTTATACAAAGCGACAGAAGGGTTGATATGAACCTGGCATCTTCGCATCTGATACAAGGGGACAGAAGAGTTGATATGAATATGACATCCCCTCACTTGATACAAGGTGACACCAGAGTGGATATGAATATGGTATCTACTGCTCAGAATGGAATGCACTCTTTTGATTTGGTGAATGTGAACCTAGAAAGTGGTCCTTTGCCAATGGCTGCAACTGATTTCATGCAAATGCATCAGCACCCACCCGTTTACCATCCAAAACAACTCCTCAATATGAGAGATCAGGTGATGGACACAAATAAGAGGCCCAATATGGAAACAAACACATACTTTATGGGAGGTGGAATGCATGTGGGATAGTTTCTTGTCTAGAGACCCACTATGTAATCTTTTCTGTTTGGAAAGGAGATGCCTTTCCTTATTTTATATTGATATGTATGTTCCTACAGCAGGCAGCAACTAATCAATTAGGTTGTAGTAATTGCAAAAAAAAAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13254#0 GTTCGGAGAGGCCTCGCTCCTCCCGCGCCGCGCGTGCGCGAAACCCTAGCTTTGAGGTGG 60 consensus_13254#1 ------------------------------------------------------------ consensus_13254#0 AGGTGGTGGTGGAGGAGGAGGAGGAGGATGAGGAGGAAGCGGCTGTGGCTGCGGCTAGGC 120 consensus_13254#1 ------------------------------------------------------------ consensus_13254#0 GTGTCAAGAGGGAGGTCGCGGATGACCTGAACGGGGAGCCCGCGGAGGAGGAGGATGACG 180 consensus_13254#1 ------------------------------------------------------------ consensus_13254#0 ACGAGGAGGAGGTGGTGGTGGAGGAGGACGAGGAGGTGGTTGTCGCCTCCGACGAGGAGG 240 consensus_13254#1 ------------------------------------------------------------ consensus_13254#0 GCGGCGACGGGGAGGCGGACGGCGGCGGCGAAGTGGCTGTGGCCTTCGAGCCGCGCACGC 300 consensus_13254#1 ------------------------------------------------------------ consensus_13254#0 TGGAGGAGGCCCTCGTTCCGCGCGTGGGTGCGGTGTTCGACTCTGTGGACGAGGCCTTCT 360 consensus_13254#1 ------------------------------------------------------------ consensus_13254#0 CGCTCTACAAGACCTACGCCTACCGCACAGGCTTCCACGCGGTGCGCCGGACCTGCCACA 420 consensus_13254#1 ------------------------------------------------------------ consensus_13254#0 ACTACGAGGGGCTCCGCTACCGCTCTACCTTTACCTGCACTCATGGTGGCAAGGCCCGGG 480 consensus_13254#1 ------------------------------------------------------------ consensus_13254#0 CTGACGCCAGCCCGTCTGATGGCTCAGGCGCCCGCTACCCACTCCGCAGCAGCAAGCGTG 540 consensus_13254#1 ------------------------------------------------------------ consensus_13254#0 CGGCCAACGCCCAGGAGAAGAGGGCTCGTCGCGGTGCGGCTGAGAAGACAGGATGCAAGG 600 consensus_13254#1 ------------------------------------------------------------ consensus_13254#0 CGATGTTGATCATCCGTGACAGGCGGGCGGATGATAAGTGGAAGGTGGAGTTCGTTGAGT 660 consensus_13254#1 ------------------------------------------------------------ consensus_13254#0 TGGAGCATAACCATCCGTGTACACCTGACATGGTGAGGTTCTTGAAGGCTTACAGGGAAA 720 consensus_13254#1 ------------------------------------------------------------ consensus_13254#0 TGCCTGACTCAGCTAAGAAGAAGGCCAAGATTTCTGATGAGATGGATGATAGGGTGGAGA 780 consensus_13254#1 ------------------------------------------------------------ consensus_13254#0 AATCGCTGAGCGAGATTGCTGAGACCAGGAAGTTCCCAACTCGGCCCAAGCGGAGTGTTG 840 consensus_13254#1 ------------------------------------------------------------ consensus_13254#0 GTGGTGGAGCCTCTGTTGGTGGGTTCAGGTTTAGTAGAAGCGACAGTTTTGTGCAGCGGT 900 consensus_13254#1 ------------------------------------------------------------ consensus_13254#0 TTGGGGATGATGACCTTATTGCACTGAAGAAGTTTATTGAGGCGATGCAGCGCAAGAAGC 960 consensus_13254#1 ------------------------------------------------------------ consensus_13254#0 CAAACTTTATCCACTACTGGGATCTTGATCAGGAAACTCATGTGAAGAATTTTTTCTGGA 1020 consensus_13254#1 ------------------------------------------------------------ consensus_13254#0 CTGACTCGAGGTCCCAGGCACAATACCGTTATTTTGGTGACGTCATTACACTTGACGTGA 1080 consensus_13254#1 ------------------------------------------------------------ consensus_13254#0 TGTATTTACAGCATTCGCGTGCTAGCCTTCCATTGGCCACAATCCTTGGGGTGAACAACC 1140 consensus_13254#1 ------------------------------------------------------------ consensus_13254#0 ATGGTCACCTTGTTCTGCTTGGTTGTGGTCTGCTTTGCAGTGACAAGAAGGAAAACTATG 1200 consensus_13254#1 ------------------------------------------------------------ consensus_13254#0 TTTGGCTGTTGAAGAGGTGGTTGGGCTGTATGAATGGCAAGCCACCAGAGGCGATCACAA 1260 consensus_13254#1 ------------------------------------------------------------ consensus_13254#0 CCACCTATTCAGATGCCGTTGCAGAAGCTGTGGCTGAGGTGTTGCCAAATGCGAGGCACC 1320 consensus_13254#1 ------------------------------------------------------------ consensus_13254#0 GTTTCTGTTTTTGGCATATCTTGAAAAAACTCCAAGAGAATGTCGGACGCACAAATGAGA 1380 consensus_13254#1 ------------------------------------------------------------ consensus_13254#0 AAGAGGCAATTTCCTTGAGATTCAAGGAGGTTGTTTATGACACAGTCACACTTACAGACT 1440 consensus_13254#1 ------------------------------------------------------------ consensus_13254#0 TTGAGAGAGAGTGGGGGCCCATGGTTGAGCAGTACAAGCTCAAAGACAATGACTGGTTCT 1500 consensus_13254#1 ------------------------------------------------------------ consensus_13254#0 CTGCTTTGTACAGCTGCCGGAAACAATGGGCACCTGGTTATGTCAACCATTCATTTTGGG 1560 consensus_13254#1 ------------------------------------------------------------ consensus_13254#0 CTGGCACTTCTGCTATTAGGAAGGTCGAGAAACCAGATCCATACTTTGATGGCGTGGTGA 1620 consensus_13254#1 ------------------------------------------------------------ consensus_13254#0 CAACTAAAACTACCCTACCAGTTTTCCTTGAGCAATACGAGACTACTCTGAGAGGGAAGC 1680 consensus_13254#1 ------------------------------------------------------------ consensus_13254#0 TGGAAAGGGAGGCATATGATGATTTGCGCTCCTATTACTCTAGGCTCACTTCGCTGTCGG 1740 consensus_13254#1 ------------------------------------------------------------ consensus_13254#0 GATTACCCTTTGAGGAACAACTCATGGAGCTCTACACAGTACCTATGTTCCAAGCATTCC 1800 consensus_13254#1 ------------------------------------------------------------ consensus_13254#0 AAGACGAGATCAAACAATTAATACACGTGATTTGTAAAGAGGTAGACAGGAGTGGAAATT 1860 consensus_13254#1 ------------------------------------------------------------ consensus_13254#0 CAATTACCTACATGGCTAGTGAGTTGATACAGGGAAAGAAGGTCAACTATACAGTTGTCT 1920 consensus_13254#1 ------------------------------------------------------------ consensus_13254#0 ACAACAGTGCTGACAAGGATGTCTGGTGCATTTGTCGCTCCTTTCCGTCACGAGGCATCC 1980 consensus_13254#1 ------------------------------------------------------------ consensus_13254#0 TTTGCAGCCATGCTCTCTCCGTTCTTAAGCAAGAGAATGTGTTAATGCTGCCATCAAAGT 2040 consensus_13254#1 ------------------------------------------------------------ consensus_13254#0 ATATCCTCAATCGTTGGAGAAAGGATTTTAGAGTACTTCATGCAACTGCAAGTTCCAGTT 2100 consensus_13254#1 ------------------------------------------------------------ consensus_13254#0 CTATATCATCTGATAGAGATTTGAGCATTTTCAATGATCTCTATGTCCGTGGCCACGAGT 2160 consensus_13254#1 ------------------------------------------------------------ consensus_13254#0 ATTTAGAAGATGTCATTGACATTGGAGCCAGAGAACCTGAGCTCAAAGAGTTTGTGTTGA 2220 consensus_13254#1 ------------------------------------------------------------ consensus_13254#0 CAGTTATGAAGGAAGCGAAGGACAAACTAGTTAGGCCTGACCATATTCATCAAGCTGATC 2280 consensus_13254#1 ------------------------------------------------------------ consensus_13254#0 AGCGGGTTGATGTAAATATGTCAGTGACTGGCCAAGTGTCCGCAGATAGAGGAGTAGATG 2340 consensus_13254#1 -----------------------------------------------------GTAGATG 7 ******* consensus_13254#0 TGAACATTTCATCAAATAGCACATCCCTGATTCAGGGAGACAGAAGGGTTGATACAAATG 2400 consensus_13254#1 TGAACATTTCATCAAATAGCACATCCCTGATTCAGGGAGACAGAAGGGTTGATACAAATG 67 ************************************************************ consensus_13254#0 TGACCTCAAACACCACAGCCATGGTTCATGGTCATGGGGATTCCATGACATCAAACACCA 2460 consensus_13254#1 TGACCTCAAACACCACAGCCATGGTTCATGGTCATGGGGATTCCATGACATCAAACACCA 127 ************************************************************ consensus_13254#0 CAGCTATGATTCGTGGGGATAGAAGAGTTGAGATGAAGATCCCAACGCCCCACCTTATTC 2520 consensus_13254#1 CAGCTATGATTCGTGGGGATAGAAGAGTTGAGATGAAGATCCCAACGCCCCACCTTATTC 187 ************************************************************ consensus_13254#0 ATGGAGACGGAAGAATTGACATGAACATGGCATCCCCTCTCTTGATGCAGAGGGACAGAA 2580 consensus_13254#1 ATGGAGACGGAAGAATTGACATGAACATGGCATCCCCTCTCTTGATGCAGAGGGACAGAA 247 ************************************************************ consensus_13254#0 GAGTTGACATGAACATGGCCTCCCCACACATGATACAGGGGGACAGAAGAGTTGATATGA 2640 consensus_13254#1 GAGTTGACATGAACATGGCCTCCCCACACATGATACAGGGGGACAGAAGAGTTGATATGA 307 ************************************************************ consensus_13254#0 ACTTGGCATCACCACACTTTATACAAAGCGACAGAAGGGTTGATATGAACCTGGCATCTT 2700 consensus_13254#1 ACTTGGCATCACCACACTTTATACAAAGCGACAGAAGGGTTGATATGAACCTGGCATCTT 367 ************************************************************ consensus_13254#0 CGCATCTGATACAAGGGGACAGAAGAGTTGATATGAATATGACATCCCCTCACTTGATAC 2760 consensus_13254#1 CGCATCTGATACAAGGGGACAGAAGAGTTGATATGAATATGACATCCCCTCACTTGATAC 427 ************************************************************ consensus_13254#0 AAGGTGACACCAGAGTGGATATGAATATGGTATCTACTGCTCAGAATGGAATGCACTCTT 2820 consensus_13254#1 AAGGTGACACCAGAGTGGATATGAATATGGTATCTACTGCTCAGAATGGAATGCACTCTT 487 ************************************************************ consensus_13254#0 TTGATTTGGTGAATGTGAACCTAGAAAGTGGTCCTTTGCCAATGGCTGCAACTGATTTCA 2880 consensus_13254#1 TTGATTTGGTGAATGTGAACCTAGAAAGTGGTCCTTTGCCAATGGCTGCAACTGATTTCA 547 ************************************************************ consensus_13254#0 TGCAAATGCATCAGCACCCACCCGTTTACCATCCAAAACAACTCCTCAATATGAGAGATC 2940 consensus_13254#1 TGCAAATGCATCAGCACCCACCCGTTTACCATCCAAAACAACTCCTCAATATGAGAGATC 607 ************************************************************ consensus_13254#0 AGGTGATGGACACAAATAAGAGGCCCAATATGGAAACAAACACATACTTTATGGGAGGTG 3000 consensus_13254#1 AGGTGATGGACACAAATAAGAGGCCCAATATGGAAACAAACACATACTTTATGGGAGGTG 667 ************************************************************ consensus_13254#0 GAATGCATGTGGGATAGTTTCTTGTCTAGAGACCCACTATGTAATCTTTTCTGTTTGGAA 3060 consensus_13254#1 GAATGCATGTGGGATAGTTTCTTGTCTAGAGACCCACTATGTAATCTTTTCTGTTTGGAA 727 ************************************************************ consensus_13254#0 AGGAGATGCCTTTCCTTATTTTATATTGATATGTATGTTCCTACAGCAGGCAGCAACTAA 3120 consensus_13254#1 AGGAGATGCCTTTCCTTATTTTATATTGATATGTATGTTCCTACAGCAGGCAGCAACTAA 787 ************************************************************ consensus_13254#0 TCAATTAGGTTGTAGTAATTGCAGATTAATCTTGCAGTGCTGGTAGCTTTGTTGTTGTAT 3180 consensus_13254#1 TCAATTAGGTTGTAGTAATTGCAAAAAAAAAAGA-------------------------- 821 *********************** * ** consensus_13254#0 CCTTCTCTGTTCGGCAGCTGTAGCAATTACTTGCTATTGTCTTGTACATAAGATAGTAGA 3240 consensus_13254#1 ------------------------------------------------------------ consensus_13254#0 ATGCAACAACCTTTTCTTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3294 consensus_13254#1 ------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||