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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13286#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1003 fasta sequence
[AATTCCCTTGGACCTGACTGGACTGAAGGAGTAGAAAGACGATAGTTCCTTTCATCAATCACCCAGCTTTACTCCTCTTCTCCCCCCGCCCCGCTTCACCAATCAATCCAAACCCTAGAGCAAATCCCCTCCCTCCCTTGCCGGAATCGCTCGCAAGCTCCAGGCAGCCCCCACACCAGTCCGCGGCGGATCAGGGGGCGGGGCGATCTCTAGCGCCCTCCGGGATTTGAAGGGTTCCGAGCGTCGGCG-ATGTCG-TCGTGGGCCGGGCCCGACGAGATCTTCCTCTCCACGTCCCTGGCCGGCTTCTTGGACAAGAAACTTATTGTCCTACTACGAGATGGACGGAAGCTGCTTGGCACACTCTGCTCATTTGATCAGTTTGCAAATGTTGTTCTTCAGGGTGCTTGTGAACGAGTAATTGTAGGTGAA-CTATATTGTGATGTTCCTCTTGGTCTATATGTGAT-CCGGGGAGAGAATGT-CGTA-TTAATC--GGAGAATT--GGAT-CGTG-AGAA-GGA-TG-AACT-CCCT-GC-TC-A-CATGA-CTTG-TGTTTCA-GAGGCTGAAA-TAAG-AAAGG-CCGAGAAAGCAGAAAGGGAAGCGAGAGATCTGAAAGGTTCA-ATGAGGAAGAGGATGGAGTTCTTAGACTTTGATTAGAATGGATTTGACCATCTTGATAGTTGCTGCTCCCACTATGGCCGCGAGTTTTTAATGGCAGCCTCTGCTACATATGTGGGCTAATGAAAGCCAGATTTCGTTGTATCTCATGCTGCTTGTTCAGCCAGAATTCTTCAGGTTGGAGATTTCAGTAAACATACTCTTTTACAGCGGTAATGTACCTGTGTTCTTAAAATTTCTTCAGATATCTTCCTGTCCTCTTGTTGCATGGAATTTGTGAAATTTCCTTCGCCACCATACCCTCCGTTTTCGCTGTCACATTGTCCGCTAAAATCAATCTTCAACTTGCCATCTTTGGATGGAATGACAGTGCTTGGCATATTGGCATTTGATGTGTAAAAAA]
[+] EMBL CF311470 [AATTCCCTTGGACCTGACTGGACTGAAGGAGTAGAAAGACGATAGTTCCTTTCATCAATCACCCAGCTTTACTCCTCTTCTCCCCCCGCCCCGCTTCACCAATCAATCCAAACCCTAGAGCAAATCCCCTCCCTCCCTTGCCGGAATCGCTCGCAAGCTCCAGGCAGCCCCCACACCAGTCCGCGGCGGATCA GGGGCGGGGCGATCTCTAGCGCCCTCCGGGATTTGAAGGGTTCCGAGCGTCGGCG ATGTCG TCGTGGGCCGGGCCCGACGAGATCTTCCTCTCCACGTCCCTGGCCGGCTTCTTGGACAAGAAACTTATTGTCCTACTACGAGATGGACGGAAGCTGCTTGGCACACTCTGCTCATTTGATCAGTTTGCAAATGTTGTTCTTCAGGGTGCTTGTGAACGAGTAATTGTAGGTGAA CTATATTGTGATGTTCCTCTTGGTCTATATGTGAT CCGGGGAGAGAATGT CGTA TTAATC GGAGAATC GGAT CGTG AGAA GGA TG AACT CCCT GC TC A CATGA CTTG TGTTTCA GAGGCTGAAA TAAG AAAGG CCGAGAAAGCAGAAAGGGAAGCGAGAGATCTGAAAGGTTCA ATGAGGAAGAGGATGGAGTTCTTAGACTTTGATTAGAATGGATTTGACCATCTTGATAGTTGCTGCTCCCACTATGGCCGCGAGTTTTTAATGGCAGCCTCTGCTACATATGTGGG ]
[+] EMBL AK099454 [ ctcacacttGACGATAGTTCCTTTCATCAATCACCCAGCTTTACTCCTCTTCTCCCCCCGCCCCGCTTCACCAATCAATCCAAACCCTAGAGCAAATCCCCTCCCTCCCTTGCCGGAATCGCTCGCAAGCTCCAGGCAGCCCCCACACCAGTCCGCGGCGGATCAGGGGGCGGGGCGATCTCTAGCGCCCTCCGGGATTTGAAGGGTTCCGAGCGTCGGCG ATGTCG TCGTGGGCCGGGCCCGACGAGATCTTCCTCTCCACGTCCCTGGCCGGCTTCTTGGACAAGAAACTTATTGTCCTACTACGAGATGGACGGAAGCTGCTTGGCACACTCTGCTCATTTGATCAGTTTGCAAATGTTGTTCTTCAGGGTGCTTGTGAACGAGTAATTGTAGGTGAA CTATATTGTGATGTTCCTCTTGGTCTATATGTGGT CCGGGGAGAGAATGT CGTA TTAATC GGAGAATT GGAT CGTG AGAA GGA TG AACT CCCT GC TC A CATGA CTTG TGTTTCA GAGGCTGAAA TAAG AAAGG CCGAGAAGGCAGAAAGGGAAGCGAGAGATCTGAAAGGTTCA ATGAGGAAGAGGATGGAGTTCTTAGACTTTGATTAGAATGGATTTGACCATCTTGATAGTTGCTGCTCCCACTATGGCCGCGAGTTTTTAATGGCAGCCTCTGCTACATATGTGGGCTAATGAAAGCCAGATTTCGTTGTATCTCATGCTGCTTGTTCAGCCAGAATTCTTCAGGTTGGAGATTTCAGTAAACATACTCTTTTACAGCGGTAATGTACCTGTGTTCTTAAA ]
[+] EMBL CF317140 [ CTTTCATCAATCACCCAGCTTTACTCCTCTTCTCCCCCCGCCCCGCTTCACCAATCAATCCAAACCCTAGAGCAAATCCCCTCCCTCCCTTGCCGGAATCGCTCGCAAGCTCCAGGCAGCCCCCACACCAGTCCGCGGCGGATCAGGGGGCGGGGCGATCTCTAGCGCCCTCCGGGATTTGAAGGGTTCCGAGCGTCGGCGAATGTCG TCGTGGGCCGGGCCCGACGAGATCTTCCTCTCCACGTCCCTGGCCGGCTTCTTGGACAAGAAACTTATTGTCCTACTACGAGATGGACGGAAGCTGCTTGGCACACTCTGCTCATTTGATCAGTTTGCAAATGTTGTTCTTCAGGGTGCTTGTGAACGAGTAATTGTAGGTGAA CTATATTGTGATGTTCCTCTTGGTCTATATGTGAT CCGGGGAGAGAATGT CGTA TTAATC GGAGAA ]
[+] EMBL CF316582 [ CTTTCATCAATCACCCAGCTTTACTCCTCTTCTCCCCCCGCCCCGCTTCACCAATCAATCCAAACCCTAGAGCAAATCCCCTCCCTCCCTTGCCGGAATCGCTCGCAAGCTCCAGGCAGCCCCCACACCAGTCCGCGGCGGATCAGGGGGCGGGGCGATCTCTAGCGCCCTCCGGGATTTGAAGGGTTCCGAGCGTCGGCG ATGTCGTTCGTGGGCCGGGCCCGACGAGATCTTCCTCTCCACGTCCCTGGCCGGCTTCTTGGACAAGAAACTTATTGTCCTACTACGAGATGGACGGAAGCTGCTTGGCACACTCTGCTCATTTGATCAGTTTGCAAATGTTGTTCTTCAGGGTGCTTGTGAACGAGTAATTGTAGGTGAACCTATATTGTGATGTTCCTCTTGGTCTATATGTGAT CCGGGGAGAGAATGT CGTA TTAATC GGAGAATT GGAT CGTG AGAA GGA TG AACT CCCT G ]
[+] EMBL OS0558A [ CCCGCTTCACCAATCAATCCAAACCCTAGAGCAAATCCCCTCCCTCCCTTGCCGGAATCGCTCGCAAGCTCCAGGCAGCCCCCACACCAGTCCGCGGCGGATCAGGGGGCGGGGCGATCTCTAGCGCCCTCCGGGATTTGAAGGGTTCCGAGCGTCGGCG ATGTCG TCGTGGGCCGGGCCCGACGAGATCTTCCTCTCCACGTCCCTGGCCGGCTTCTTGGACAAGAAACTTATTGTCCTACTACGAGATGGACGGAAGCTGCTTGGCACACTCTGCTCATTTGATCAGTTTGCAAATGTTGTTCTTCAGGGTGCTTGTGAACGAGTAATTGTAGGTGAA CTATATTGTGATGTTCCTCTTGGTCTATATGTGAT CCGGGGAGAGAATGT CGTA TTAATC GGAGAATT GGAT CGTG AGAA GGA TG ACT NCCT GC Ta c ]
[+] EMBL CF334067 [ CAAACCCTAGAGCAAATCCCCTCCCTCCCTTGCCGGAATCGCTCGCAAGCACCAGGCAGCCCCCACACCAGTCCGCGGCGGATCAGGGGGCGGGGCGATCTCTAGCGCCCTCCGGGATTTGAAGGGTTCCGAGCGTCGGCG ATGTCG TCGTGGGCCGGGCCCGACGAGATCTTCCTCTCCACGTCCCTGGCCGGCTTCTTGGACAAGAAACTTATTGTCCTACTACGAGATGGACGGAAGCTGCTTGGCACACTCTGCTCATTTGATCAGTTTGCAAATGTTGTTCTTCAGGGTGCTTGTGAACGAGTAATTGTAGGTGAA CTATATTGTGATGTTCCTCTTGGTCTATATGTGAT CCGGGGAGAGAATGT CGTC TTAATC GGAGAATT GGAT CGTG AGAA GGA TG AACT CCCT GC TC A CATGA CTTG TGTTTCA GAGGCTGAAA TAAG AAAGG CCGAGAAAGCAGAAAGGGAAGCGAGAGATCTGAAAGGT ]
[+] EMBL C74167 [ CCCTCCCTTGCCGGAATCGCTCGCAAGCTCCAGGCAGCCCCCACACCAGTCCGCGGCGGATCAGGGGGCGGGGCGATCTCTAGCGCCCTCCGGGATTTGAAGGGTTCCGAGCGTCGGCG ATGTCG TCGTGGGCCGGGCCCGACGAGATCTTCCTCTCCACGTCCCTGGCCGGCTTCTTGGACAAGAAACTTATTGTCCTACTACGAGATGGACGGAAGCTGCTTGGCACACTCTGCTCATTTGATCAGTTTGCAAATGTTGTTCTTCAGGGTGCTTGTGAACGAGTAATTGTAGGTGAA CTATATTGTG ]
[+] EMBL AU093505 [ TTTGCAAATGTTGTTCTTCAGGGTGCTTGTGAACGAGTAATTGTAGGTGAA CTATATTGTGATGTTCCTCTTGGTCTATATGTGAT CCGGGGAGAGAATGT CGTA TTAATC GGAGAATT GGAT CGTG AGAA GGA TG AACT CCCT GC TC A CATGA CTTG TGTTTCA GAGGCTGAAA TAAG AAAGG CCGAGAAAGCAGAAAGGGAAGCGAGAGATCTGAAAGGTTCA ATGAGGAAGAGGATGGAGTTCTTAGACTTTGATTAGAATGGATTTGACCATCTTGATAGTTGCTGCTCCCACTATGGCCGCGAGTTTTTAATGGCAGCCTCTGCTACATATGTGGGCTAATGAAAGCCAGATTTCGTTGTATCTCATGCTGCTTGTTCAGCCAGAATTCTTCAGGTTGGAGATTTCAGTAAACATACTCTTTTACAGCGGTAATGTACCTGTGTTCTTAAAAaaaaaaa ]
[-] EMBL CF316581 [ TGCAAATGTTGTTCTTCAGGGTGCTTGTGAACGAGTAATTGTAGGTGAA CTATATTGTGATGTTCCTCTTGGTCTATATGTGAT CCGGGGAGAGAATGT CGTA TTAATC GGAGAATT GGAT CGTG AGAA GGA TG AACT CCCT GCTTC A CATGA CTTG TGTTTCA GAGGCTGAAA TAAG AAAGG CCGAGAAAGCAGAAAGGGAAGCGAGAGATCTGAAAGGTTCA ATGAGGAAGAGGATGGAGTTCTTAGACTTTGATTAGAATGGATTTGACCATCTTGATAGTTGCTGCTCCCACTATGGCCGCGAGTTTTTAATGGCAGCCTCTGCTACATATGTGGGCTAATGAAAGCCAGATTTCGTTGTATCTCATGCTGCTTGTTCAGCCAGAATTCTTCAGGTTGGAGATTTCAGTAAACATACTCTTTTACAGCGGTAATGTACCTGTGTTCTTAAAATTTCTTCAGATATCTTCCTGTCCTCTTGTTGCATGGAATTTGTGAAATTTCCTTCGCCACCATACCCTCCGTTTTCGCTGTCACATTGTCCGCTAAAATCAATCTTCAACTTGCCATCTTTGGATGGAATGACAGTGCTTGGCATATTGGCATTTGATGTGTAAAAAA]
[-] EMBL CF317139 [ AATTGTAGGTGAA CTATATTGTGATGTTCCTCTTGGTCTATATGTGAT CCGGGGAGAGAATGT CGTA TTAATC GGAGAATT GGAT CGTG AGAA GGA TG AACTCCCCT GC TC A CATGA CTTG TGTTTCA GAGGCTGAAA TAAG AAAGG CCGAGAAAGCAGAAAGGGAAGCGAGAGATCTGAAAGGTTCA ATGAGGAAGAGGATGGAGTTCTTAGACTTTGATTAGAATGGATTTGACCATCTTGATAGTTGCTGCTCCCACTATGGCCGCGAGTTTTTAATGGCAGCCTCTGCTACATATGTGGGCTAATGAAAGCCAGATTTCGTTGTATCTCATGCTGCTTGTTCAGCCAGAATTCTTCAGGTTGGAGATTTCAGTAAACATACTCTTTTACAGCGGTAATGTACCTGTGTTCTTAAAATTTCTTCAGATATCTTCCTGTCCTCTTGTTGCATGGAATTTGTGAAATTTCCTTCGCCACCATACCCTCCGTTTTCGCTGTCACATTGTCCGCTAAAATCAATCTTCAACTTGCCATCTTTGGATGGAATGACAGTGCTTGGCATATTGGCATTTGATGTGTAAAAAA]
[+] EMBL C98073 [ TGTGATCCCGGGGAGAGAATGTCCGTATTTAATCCGGGAGAATTTGGGATCCGTGAAGAAGGGATTGAAACT CCCTGGC TCNACCTTGACCTTGNTGTTTCAGGAGGCTGAAATTANGAAAAGGCCCGAG AANCAGAAAGGGAAGCGAGANATCTGAAAGGTTCANATGAGGAAGAGGATGGAGTTCTTAGACTTTGATTAGAATGGATTTGACCATCTTGATAGTTGCTGCTCCCACTATGGCCGCGAGTTTTTAATGGCAGCCTCTGCTACATATGTGGGCTAATGAAAGCCAGATTTCGTTGTATCTCATGCTGCTTGTTCAGCCAGAATTCTTCAGGTTGGAGATTTCAGTAAACATACTCTTTTACAGCGGTAATGTACCTGTGTTCTTAAAATTTCTTCAGATAaaaa ]
consensusID : consensus_13286#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence
[GTCCGCGNCGGATCAGGGGCCGGGGCGATNTCTAGCGCCNTCCGGGATTTGAAGGGTTCCAAGCGTCGGCGATGTCGTCGTGGGCCGGGCCCGACGAGTCTTCCTCTCCACGTCCCTGGCCGGCTTCTTGGACAAGAAACTTATTGTCCTACTACGAGATGGACGGAAGCTGCTTGGCACACTCTGCTCATTTGATCAGTTTGCAAATGTTGTTCTTCAGGGTGCTTGTGAACGAGTAATTGTAGGTGAACTATATTGTGATGTTCCTCTTGGTCTATATGTGATCCGGGGANAGAATGTCGTATTAATCGGAGAATTGGATCGTGAGAAGGATGAACTCCCTGCTCACATGACTTGTGTTTCANAGGCTGAAATAAGAAAGGCCGAGAAAGCAGAAAGGGAAGCGAGAGATNTGAAAGGTTCAATGAGGAAGAGGATGGAGTTCTTAGACTTTGATTAGAATGGATTTGACCATCTTGATAGTTGCTGCTCCCNCTATGGCCGCGAGTTTTTAATGGCAGCCTCTGCTACATATGTGGGCTAATGAAAGCCAGATTTCGTTGTATCTCATGCTGCTTGTTCAGCCAGAATTCTTCAGGTTGGAGATTTCAGTAAACATACTCTTTTACAGCGGTAATGTACCTGTGTTCTTAAAATTTCTTCAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU166012 [GTCCGCGNCGGATCAGGGGCCGGGGCGATNTCTAGCGCCNTCCGGGATTTGAAGGGTTCCAAGCGTCGGCGATGTCGTCGTGGGCCGGGCCCGACGAGTCTTCCTCTCCACGTCCCTGGCCGGCTTCTTGGACAAGAAACTTATTGTCCTACTACGAGATGGACGGAAGCTGCTTGGCACACTCTGCTCATTTGATCAGTTTGCAAATGTTGTTCTTCAGGGTGCTTGTGAACGAGTAATTGTAGGTGAACTATATTGTGATGTTCCTCTTGGTCTATATGTGATCCGGGGANAGAATGTCGTATTAATCGGAGAATTGGATCGTGAGAAGGATGAACTCCCTGCTCACATGACTTGTGTTTCANAGGCTGAAATAAGAAAGGCCGAGAAAGCAGAAAGGGAAGCGAGAGATNTGAAAGGTTCAATGAGGAAGAGGATGGAGTTCTTAGACTTTGATTAGAATGGATTTGACCATCTTGATAGTTGCTGCTCCCNCTATGGCCGCGAGTTTTTAATGGCAGCCTCTGCTACATATGTGGGCTAATGAAAGCCAGATTTCGTTGTATCTCATGCTGCTTGTTCAGCCAGAATTCTTCAGGTTGGAGATTTCAGTAAACATACTCTTTTACAGCGGTAATGTACCTGTGTTCTTAAAATTTCTTCAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13286#0 AATTCCCTTGGACCTGACTGGACTGAAGGAGTAGAAAGACGATAGTTCCTTTCATCAATC 60
consensus_13286#1 ------------------------------------------------------------
consensus_13286#0 ACCCAGCTTTACTCCTCTTCTCCCCCCGCCCCGCTTCACCAATCAATCCAAACCCTAGAG 120
consensus_13286#1 ------------------------------------------------------------
consensus_13286#0 CAAATCCCCTCCCTCCCTTGCCGGAATCGCTCGCAAGCTCCAGGCAGCCCCCACACCAGT 180
consensus_13286#1 ----------------------------------------------------------GT 2
**
consensus_13286#0 CCGCGGCGGATCAGGGGGCGGGGCGATCTCTAGCGCCCTCCGGGATTTGAAGGGTTCCGA 240
consensus_13286#1 CCGCGNCGGATCAGGGGCCGGGGCGATNTCTAGCGCCNTCCGGGATTTGAAGGGTTCCAA 62
***** *********** ********* ********* ******************** *
consensus_13286#0 GCGTCGGCGATGTCGTCGTGGGCCGGGCCCGACGAGATCTTCCTCTCCACGTCCCTGGCC 300
consensus_13286#1 GCGTCGGCGATGTCGTCGTGGGCCGGGCCCGACGAG-TCTTCCTCTCCACGTCCCTGGCC 121
************************************ ***********************
consensus_13286#0 GGCTTCTTGGACAAGAAACTTATTGTCCTACTACGAGATGGACGGAAGCTGCTTGGCACA 360
consensus_13286#1 GGCTTCTTGGACAAGAAACTTATTGTCCTACTACGAGATGGACGGAAGCTGCTTGGCACA 181
************************************************************
consensus_13286#0 CTCTGCTCATTTGATCAGTTTGCAAATGTTGTTCTTCAGGGTGCTTGTGAACGAGTAATT 420
consensus_13286#1 CTCTGCTCATTTGATCAGTTTGCAAATGTTGTTCTTCAGGGTGCTTGTGAACGAGTAATT 241
************************************************************
consensus_13286#0 GTAGGTGAACTATATTGTGATGTTCCTCTTGGTCTATATGTGATCCGGGGAGAGAATGTC 480
consensus_13286#1 GTAGGTGAACTATATTGTGATGTTCCTCTTGGTCTATATGTGATCCGGGGANAGAATGTC 301
*************************************************** ********
consensus_13286#0 GTATTAATCGGAGAATTGGATCGTGAGAAGGATGAACTCCCTGCTCACATGACTTGTGTT 540
consensus_13286#1 GTATTAATCGGAGAATTGGATCGTGAGAAGGATGAACTCCCTGCTCACATGACTTGTGTT 361
************************************************************
consensus_13286#0 TCAGAGGCTGAAATAAGAAAGGCCGAGAAAGCAGAAAGGGAAGCGAGAGATCTGAAAGGT 600
consensus_13286#1 TCANAGGCTGAAATAAGAAAGGCCGAGAAAGCAGAAAGGGAAGCGAGAGATNTGAAAGGT 421
*** *********************************************** ********
consensus_13286#0 TCAATGAGGAAGAGGATGGAGTTCTTAGACTTTGATTAGAATGGATTTGACCATCTTGAT 660
consensus_13286#1 TCAATGAGGAAGAGGATGGAGTTCTTAGACTTTGATTAGAATGGATTTGACCATCTTGAT 481
************************************************************
consensus_13286#0 AGTTGCTGCTCCCACTATGGCCGCGAGTTTTTAATGGCAGCCTCTGCTACATATGTGGGC 720
consensus_13286#1 AGTTGCTGCTCCCNCTATGGCCGCGAGTTTTTAATGGCAGCCTCTGCTACATATGTGGGC 541
************* **********************************************
consensus_13286#0 TAATGAAAGCCAGATTTCGTTGTATCTCATGCTGCTTGTTCAGCCAGAATTCTTCAGGTT 780
consensus_13286#1 TAATGAAAGCCAGATTTCGTTGTATCTCATGCTGCTTGTTCAGCCAGAATTCTTCAGGTT 601
************************************************************
consensus_13286#0 GGAGATTTCAGTAAACATACTCTTTTACAGCGGTAATGTACCTGTGTTCTTAAAATTTCT 840
consensus_13286#1 GGAGATTTCAGTAAACATACTCTTTTACAGCGGTAATGTACCTGTGTTCTTAAAATTTCT 661
************************************************************
consensus_13286#0 TCAGATATCTTCCTGTCCTCTTGTTGCATGGAATTTGTGAAATTTCCTTCGCCACCATAC 900
consensus_13286#1 TCAAAAA---------------AAAAAAAAAAAAAAAAAAAA------------------ 688
*** * * * ** ***
consensus_13286#0 CCTCCGTTTTCGCTGTCACATTGTCCGCTAAAATCAATCTTCAACTTGCCATCTTTGGAT 960
consensus_13286#1 ------------------------------------------------------------
consensus_13286#0 GGAATGACAGTGCTTGGCATATTGGCATTTGATGTGTAAAAAA 1003
consensus_13286#1 -------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||