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Oryza sativa
cluster # 13302 cluster # 13302       Sequences # 12       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13302#0 length = 1210 sequences # 5  
consensus_13302#1 length = 636 sequences # 1  
consensus_13302#2 length = 572 sequences # 4  
consensus_13302#3 length = 485 sequences # 1  
consensus_13302#4 length = 424 sequences # 1  

consensusID : consensus_13302#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1210
fasta sequence
                              [ACTTCCCTCCGACCTTACGTCTGCGGATTACGCACGTGAGAACTGCGGGGGAATCACCGGCGTCCGGCGTAAGCCTAACCTCCTGCCGTGAGGTGATTTTATTTCGTTCAAGTTTAAATACTTTTATATTTAAATTTTTTTTATATTATTACATTGAATATATGTACGCACTCTGATGGAGAAACTATCTTTGATCGGTCGGTCAAAATCCACAATAGTCAGGTTGCAATAAAAAACTGCTGGTTAAGTTTAGAGCTATTTATTTTAAGTAAATTTCACAAAACTACAGGTATTTTTCACAATTTATCACAAAAATACATATTTAAGATCTTGTTTTATTAAACTATAGATTTAGTGTCTACTTTATCACAAAACTACAGGTACTTTATATAATCTATCACAAAACTACATATTTAAGAATTTATTTCACAAAACTATAGATTTAGTGTATTCGTCTATCCCAGAACTACACATTTAGTGTCTTCTTTTATCACAAAACTATAGGTTTAGTGTCTCCATTATCACAAAACTACAGGTTTTAACAACGCTAAAACATATAGTTTTGTGATAAATGAAGATATTAAATATGTAGTTTTGTGATATATTGTGCAAAGTGCCTGTAGTTTTGTGATAAACGTAGACACTAAATCTATAGTTTTCTTAAACAAGCTTTTAAATATGTAGTTTTGTGATAGATCGTACAAACTATATGTAGTTTTATGAAATTTACTCTTTTTTTTATCTTTAGTCTCGGTTGGTGTTAAAAGATCTTTATTACAGCAATCGAGACTAAAGATCTATTTTTAGTCCCGGTTGGTAACATCAACCGAAACAAAAGATCGGCATGCGCGGCGAAGAGTACAAGGCATGTGCAAGATCGAGGAGGAGACGGGTGGCCTTATCTCTTCCTCTCTAACCTTATCTCTTCCTCTTCCTTCTCTCCTTTTAACTCCTCTCCTCCTTTCCCTCCCCCATCATCCCCCCTATGATGGATGAGCCGGGCGGCCGGGCAGCGCGGAGGGCCGGGCGGCCGGAGGCCTCGCGGCGGCGGGCGGCGTGGGAGCAGGCTTTTTTTTCTTTTTTTTAGAATTTATGATTCGGATCTGTGTATTTGATTTGTGTGTGATGTGAATATGTGATGTATTGTGATGAATTTTGTAGAAGTTGTGATGTAATTTTTTTTAAGATTTT-TGAAGTTTTTAAAGGGCCC]

[+] EMBL CB643167             [ACTTCCCTCCGACCTTACGTCTGCGGATTACGCACGTGAGAACTGCGGGGGAATCACCGGCGTCCGGCGTAAGCCTAACCTCCTGCCGTGAGGTGATTTTATTTCGTTCAAGTTTAAATACTTTTATATTTAAATTTTTTTTATATTATTACATTGAATATATGTACGCACTCTGATGGAGAAACTATCTTTGATCGGTCGGTCAAAATCCACAATAGTCAGGTTGCAATAAAAAACTGCTGGTTAAGTTTAGAGCTATTTATTTTAAGTAAATTTCACAAAACTACAGGTATTTTTCACAATTTATCACAAAAATACATATTTAAGATCTTGTTTTATTAAACTATAGATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CB655715             [                           TTACGCACGTGAGAACTGCGGGGGAATCACCGGCGTCCGGCGTAAGCCTAACCTCCTGCCGTGAGGTGATTTTATTTCGTTCAAGTTTAAATACTTTTATATTTAAATTTTTTTTATATTATTACATTGAATATATGTACGCACTCTGATGGAGAAACTATCTTTGATCGGTCGGTCAAAATCCACAATAGTCAGGTTGCAATAAAAAACTGCTGGTTAAGTTTAGAGCTATTTATTTTAAGTAAATTTCACAAAACTACAGGTATTTTTCACAATTTATCACAAAAATACATATTTAAGATCTTGTTTTATTAAACTATAGATTTAGTGTCTACTTTATCACAAAACTACAGGTACTTTATATAATCTATCACAAAACTACATATTTAAGAATTTATTTCACAAAACTATAGATTTAGTGTATTCGTCTATCCCAGAACTACACATTTAGTGTCTTCTTTTATCACAAAACTATAGGTTTAGTGTCTCCATTATCACAAAACTACAGGTTTTAACAACGCTAAAACATATAGTTTTGTGATAAATGAAGATATTAAATATGTAGTTTTGTGATATATTGTGCAAAGTGCCTGTAGTTTTGTGATAAACGTAGACACTAAATCTATAGTTTTCTTAAACAAGCTTTTAAATATGTAGTTTTGTGATAGATCGTACAAACTATATGTAGTTTTATGAAATTTACTCTTTTTTTTATCTTTAGTCTCGGTTGGTGTTAAAAGATCTTTATTACAGCAA                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CB664317             [                                                                CGGCGTAAGCCTAACCTCCTGCCGTGAGGTGATTTTATTTCGTTCAAGTTTAAATACTTTTATATTTAAATTTTTTTTATATTATTACATTGAATATATGTACGCACTCTGATGGAGAAACTATCTTTGATCGGTCGGTCAAAATCCACAATAGTCAGGTTGCAATAAAAAACTGCTGGTTAAGTTTAGAGCTATTTATTTTAAGTAAATTTCACAAAACTACAGGTATTTTTCACAATTTATCACAAAAATACATATTTAAGATCTTGTTTTATTAAACTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CB643168             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GTTTTCTTAAACAAGCTTTTAAATATGTAGTTTTGTGATAGATCGTACAAACTATATGTAGTTTTATGAAATTTACTCTTTTTTTTATCTTTAGTCTCGGTTGGGGTTAAAAGATCTTTATTTCAGCAATCGAGACTAAAGATCTATTTTTAGTCCCGGTTGGTAACATCAACCGAAACAAAAGATCGGCATGCGCGGCGAAGAGTACAAGGCATGTGCAAGATCGAGGAGGAGACGGGTGGCCTTATCTCTTCCTCTCTAACCTTATCTCTTCCTCTTCCTTCTCTCCTTTTAACTCCTCTCCTCCTTTCCCTCCCCCATCATCCCCCCTATGATGGATGAGCCGGGCGGCCGGGCAGCGCGGAGGGCCGGGCGGCCGGAGGCCTCGCGGCGGCGGGCGGCGTGGGAGCAGGCTTTTTTTTCTTTTTTTTAGAATTTATGATTCGGATCTGTGTATTTGATTTGTGTGTGATGTGAATATGTGATGTATTGTGATGAATTTTGTAGAAGTTGTGATGTAATTTTTTTTAAGATTTT TGAAGTTTTTAAAGGGCCC]
[-] EMBL CB664318             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TAAACAAGCTTTTAAATATGTAGTTTTGTGATAGATCGTACAAACTATATGTAGTTTTATGAAATTTACTCTTTTTTTTATCTTTAGTCTCGGTTGGTGTTAAAAGATCTTTATTACAGCAATCGAGACTAAAGATCTATTTCTAGTCCCGGTTGGTAACATCAACCGAAACAAAAGATCGGCATGCGCGGCGAAGAGTACAAGGCATGTGCAAGATCGAGGAGGAGACGGGTGGCCTTATCTCTTCCTCTCTAACCTTATCTGTTCCTCTTCCTTCTCTCCTTTTAACTCCTCTCCTCCTTTCCCTCCCCCATCATCCCCACTATGATGGATGAGCCGGGCGGCCGGGCAGCGCGGAGGGCCGGGCGGCCGGAGGCCTCGCGGCGGCGGGCGGCGTGGGAGCAGGCTTTTTTTTCTTTTTTTTAGAATTTATGATTCGGATCTGTGTATTTGATTTGTGTGTGATGTGAATATGTGATGTATTGTGATGAATTTTGTAGAAGTTGTGATGTAATTTTTTTTAAGATTTTGTGA                ]


>consensus_13302#0 ACTTCCCTCCGACCTTACGTCTGCGGATTACGCACGTGAGAACTGCGGGGGAATCACCGG CGTCCGGCGTAAGCCTAACCTCCTGCCGTGAGGTGATTTTATTTCGTTCAAGTTTAAATA CTTTTATATTTAAATTTTTTTTATATTATTACATTGAATATATGTACGCACTCTGATGGA GAAACTATCTTTGATCGGTCGGTCAAAATCCACAATAGTCAGGTTGCAATAAAAAACTGC TGGTTAAGTTTAGAGCTATTTATTTTAAGTAAATTTCACAAAACTACAGGTATTTTTCAC AATTTATCACAAAAATACATATTTAAGATCTTGTTTTATTAAACTATAGATTTAGTGTCT ACTTTATCACAAAACTACAGGTACTTTATATAATCTATCACAAAACTACATATTTAAGAA TTTATTTCACAAAACTATAGATTTAGTGTATTCGTCTATCCCAGAACTACACATTTAGTG TCTTCTTTTATCACAAAACTATAGGTTTAGTGTCTCCATTATCACAAAACTACAGGTTTT AACAACGCTAAAACATATAGTTTTGTGATAAATGAAGATATTAAATATGTAGTTTTGTGA TATATTGTGCAAAGTGCCTGTAGTTTTGTGATAAACGTAGACACTAAATCTATAGTTTTC TTAAACAAGCTTTTAAATATGTAGTTTTGTGATAGATCGTACAAACTATATGTAGTTTTA TGAAATTTACTCTTTTTTTTATCTTTAGTCTCGGTTGGTGTTAAAAGATCTTTATTACAG CAATCGAGACTAAAGATCTATTTTTAGTCCCGGTTGGTAACATCAACCGAAACAAAAGAT CGGCATGCGCGGCGAAGAGTACAAGGCATGTGCAAGATCGAGGAGGAGACGGGTGGCCTT ATCTCTTCCTCTCTAACCTTATCTCTTCCTCTTCCTTCTCTCCTTTTAACTCCTCTCCTC CTTTCCCTCCCCCATCATCCCCCCTATGATGGATGAGCCGGGCGGCCGGGCAGCGCGGAG GGCCGGGCGGCCGGAGGCCTCGCGGCGGCGGGCGGCGTGGGAGCAGGCTTTTTTTTCTTT TTTTTAGAATTTATGATTCGGATCTGTGTATTTGATTTGTGTGTGATGTGAATATGTGAT GTATTGTGATGAATTTTGTAGAAGTTGTGATGTAATTTTTTTTAAGATTTTTGAAGTTTT TAAAGGGCCC



consensusID : consensus_13302#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 636
fasta sequence
                              [TTAACAACGATAAAACATATAGTTTTGTGATAAATGAAGATATTAAATATGTAGTTTTGTGATATATTGTGCAAAGTGCCTGTAGTTTTGTGATAANCGTAGACACTAAATCTATAGTTTTTTTAAACAAGCTTTTAAATATGTAGTTTTGTGATAGATCGTACAAACTATATGTAGTTTTATGAAATTTACTCTTTTTTTTATCTTTAGTCTCGGTTGGTGTTAAAAGATCTTTATTACAGCAATCGAGACTAAAGATCTATTTCTAGTCCCGGTTGGTAACATCAACCGAAACAAAAGATCGGCATGCGCGGCGAAGAGTACAAGGCATGTGCAAGATCGAGGAGGAGACGGGTGGCCTTATCTTTTCCTCTCTAACCTTATCTTTTCCTCTTCCTTTTCTCCTTTTAACTCCTCTCCTCCTTTCCCTCCCCCATCATCCCCACTATGATGGATGAGCCGGGCGGCCGGGCAGCGCGGAGGGCCGGGCGGCCGGAGGCCTCGCGGCGGCGGGCGGCGTGGGAGCAGGCTTTTTTTTTCTTTTTTTTAGAATTTATGATTCGGATCTGTGTATTTGATTTGTGTGTGATAAGGATATGTGATGTATTGTGATGAAAAAAAAAAAACTTTAAAGGA]

[-] EMBL CB655716             [TTAACAACGATAAAACATATAGTTTTGTGATAAATGAAGATATTAAATATGTAGTTTTGTGATATATTGTGCAAAGTGCCTGTAGTTTTGTGATAANCGTAGACACTAAATCTATAGTTTTTTTAAACAAGCTTTTAAATATGTAGTTTTGTGATAGATCGTACAAACTATATGTAGTTTTATGAAATTTACTCTTTTTTTTATCTTTAGTCTCGGTTGGTGTTAAAAGATCTTTATTACAGCAATCGAGACTAAAGATCTATTTCTAGTCCCGGTTGGTAACATCAACCGAAACAAAAGATCGGCATGCGCGGCGAAGAGTACAAGGCATGTGCAAGATCGAGGAGGAGACGGGTGGCCTTATCTTTTCCTCTCTAACCTTATCTTTTCCTCTTCCTTTTCTCCTTTTAACTCCTCTCCTCCTTTCCCTCCCCCATCATCCCCACTATGATGGATGAGCCGGGCGGCCGGGCAGCGCGGAGGGCCGGGCGGCCGGAGGCCTCGCGGCGGCGGGCGGCGTGGGAGCAGGCTTTTTTTTTCTTTTTTTTAGAATTTATGATTCGGATCTGTGTATTTGATTTGTGTGTGATAAGGATATGTGATGTATTGTGATGAAAAAAAAAAAACTTTAAAGGA]


>consensus_13302#1 TTAACAACGATAAAACATATAGTTTTGTGATAAATGAAGATATTAAATATGTAGTTTTGT GATATATTGTGCAAAGTGCCTGTAGTTTTGTGATAANCGTAGACACTAAATCTATAGTTT TTTTAAACAAGCTTTTAAATATGTAGTTTTGTGATAGATCGTACAAACTATATGTAGTTT TATGAAATTTACTCTTTTTTTTATCTTTAGTCTCGGTTGGTGTTAAAAGATCTTTATTAC AGCAATCGAGACTAAAGATCTATTTCTAGTCCCGGTTGGTAACATCAACCGAAACAAAAG ATCGGCATGCGCGGCGAAGAGTACAAGGCATGTGCAAGATCGAGGAGGAGACGGGTGGCC TTATCTTTTCCTCTCTAACCTTATCTTTTCCTCTTCCTTTTCTCCTTTTAACTCCTCTCC TCCTTTCCCTCCCCCATCATCCCCACTATGATGGATGAGCCGGGCGGCCGGGCAGCGCGG AGGGCCGGGCGGCCGGAGGCCTCGCGGCGGCGGGCGGCGTGGGAGCAGGCTTTTTTTTTC TTTTTTTTAGAATTTATGATTCGGATCTGTGTATTTGATTTGTGTGTGATAAGGATATGT GATGTATTGTGATGAAAAAAAAAAAACTTTAAAGGA



consensusID : consensus_13302#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 572
fasta sequence
                              [AGCCACGTAATCTGCGCGAGCCACCATGCTAGTTTATCATAAAACTAAATATTTAAGAGCTTGTTTCACAAAACTAAAGATTTAGTGTCTCCGTTTATCACAAAACTACAAGTACTTTGTACAATAGATCACAAAACTACAGATTTAAGAATTTGTTTCATAAAACTATAGATTTAGTGTATTCGTTTATCACAGAACTACACATTTAGTGTCTTTATTTATCACAAAACTACAAATTTAGTGTTTTAAAACCTATAGTTTTGTGATAATGGAGACACTAAACCTGTAGTTTTGTGATAAATGAAGATATTAAATCTGTAGTTTTGTAAAGCAAGTTCTTAAATATGTAGTTTTATAATATATTGTGTAAAGTACATGTAGTTTTGTGATAAACGAAGACATTGAATCTGTATTTTTGTGAAACAAGTTCTTAATCTGTAGTTTTGTGATAAATCGTGCAAAGTATCTGTAGTTTTACGAAAGAGTGAATTGCATTGGCGGTACACGAATTTGTCAGGTGGGTGCAATCTAGTGCATGAACTTATAAAATGCTCATGTTGGTGCATGAACTT]

[+] EMBL CB641363             [AGCCACGTAATCTGCGCGAGCCACCATGCTAGTTTATCATAAAACTAAATATTTAAGAGCTTGTTTCACAAAACTAAAGATTTAGTGTCTCCGTTTATCACAAAACTACAAGTACTTTGTACAATAGATCACAAAACTACAGATTTAAGAATTTGTTTCATAAAACTATAGATTTAGTGTATTCGTTTATCACAGAACTACACATTTAGTGTCTTTATTTATCACAAAACTACAAATTTAGTGTTTTAAAACCTATAGTTTTGTGATAATGGAGACACTAAACCTGTAGTTTTGTGATAAATGAAGATATTAAATCTGTAGTTTTGTAAAGCAAGTTCTTAAATATGTAGTTTTATAATATATTGTGTAAAGTACATGTAGTTTTGTGATAAACGAAGACATTGAATCTGTATTTTTGTGAAACAAGTTCTTAATCTGTAGTTTTGTGATAAATCGTGCAAAGTATCTGTAGTTTTACGAAAGAGTGAATTGCATTGGCGGTACACGAATTTGTCAGGTGGGTGCAATCTAGTGCATGAACTTATAAAATGCTCATGTTGGTGCATGAACTT]
[+] EMBL CB640465             [AGCCACGTGATCTGCGCGAGCCACCATGCTAGTTTATCATAAAACTAAATATTTAAGAGCTTGTTTCACAAAACTAAAGATTTAGTGTCTCCGTTTATCACAAAACTACAAGTACTTTGTACAATAGATCACAAAACTACAGATTTAAGAATTTGTTTCATAAAACTATAGATTTAGTGTATTCGTTTATCACAGAACTACACATTTAGTGTCTTTATTTATCACAAAACTACAAATTTAGTGTTTTAAAACCTATAGTTTTGTGATAATGGAGACACTAAACCTGTAGTTTTGTGATAAATGAAGATGTTAAATCTGTAGTTTTGTAAAGCAAGTTCTTAAATATGTAGTTTTATAATATATTGTGTAAAGTACATGTAGTTTTGTGATAAACGAAGACATTGAATCTGTATTTCTGTGAAACAAGTTCTTAATCTGTcg                                                                                                                                   ]
[+] EMBL CB640466             [                            CTAGTTTATCATAAAACTAAATATTTAAGAGCTTGTTTCACAAAACTAAAGATTTATTGTCTCCGTTTATCACAAAACTACAAGTACTTTGTACAATAGATCACAAAACTACAGATTTAAGAATTTGTTTCATAAAACTATAGATTTAGTGTATTCGTTTATCACAGAACTACACATTTAGTGTCTTTATTTATCACAAAACTACAAATTTAGTGTTTTAAAACCTATAGTTTTGTGATAATGGAGACACTAAACCTGTAGTTCTGTGATAAATGAAGATATTAAATCTGTAGTTTTGTAAAGCAAGCTCTTAAATATGTACTTTTATAATATATTGTGTAAAGTACATGTAGTTTTGTGATAAACGAA                                                                                                                                                                               ]
[+] EMBL CB641362             [                                                                                                   ACAAAACTACAAGTACTTTGTACGATAGATCACAAAACTACAGATATAAGAATTTGTCTCATAAAACTATAGATTTATTGTATTCGTTTATCACAGAACTACACATTTAGTGTCTTTATTTATCACAAAACTACAAATTTAGTGTTTTAAAACCTATAGTTTTGTGATAATGGAGACACTAAACCTGTAGTTTTGTGATAAATGAAGATATTAAATCTGTAGTTTTGTAAAGCAAGTTCTTAAATATGTAGTTTTATAATATATTGTGTAAAGTACATGTAGTTTTGTGATAAACGAAGACATTGAATCTGTATTTTTGTGAAACAAGTCCTTAATCTGCACTTTTGTGATAAATCGTG                                                                                                                  ]


>consensus_13302#2 AGCCACGTAATCTGCGCGAGCCACCATGCTAGTTTATCATAAAACTAAATATTTAAGAGC TTGTTTCACAAAACTAAAGATTTAGTGTCTCCGTTTATCACAAAACTACAAGTACTTTGT ACAATAGATCACAAAACTACAGATTTAAGAATTTGTTTCATAAAACTATAGATTTAGTGT ATTCGTTTATCACAGAACTACACATTTAGTGTCTTTATTTATCACAAAACTACAAATTTA GTGTTTTAAAACCTATAGTTTTGTGATAATGGAGACACTAAACCTGTAGTTTTGTGATAA ATGAAGATATTAAATCTGTAGTTTTGTAAAGCAAGTTCTTAAATATGTAGTTTTATAATA TATTGTGTAAAGTACATGTAGTTTTGTGATAAACGAAGACATTGAATCTGTATTTTTGTG AAACAAGTTCTTAATCTGTAGTTTTGTGATAAATCGTGCAAAGTATCTGTAGTTTTACGA AAGAGTGAATTGCATTGGCGGTACACGAATTTGTCAGGTGGGTGCAATCTAGTGCATGAA CTTATAAAATGCTCATGTTGGTGCATGAACTT



consensusID : consensus_13302#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 485
fasta sequence
                              [TCCACCGTGGTCTCCTCCTCCTCCTCCTCTCCACCCGCATCCGTGGCTCCGGTTGCGCTGCTCGGGAGCCCTCGCGGCTTTCTAGGAGGTCGCTGGAGCGGCCGATTAGAGGGGCCAGCGCCGGCGGCGTCGGATTCGGCGCCTCTTCCGAGACAGGGAGTAGCATTCACTTCCCTCCGTCCTTACGTCTGCGGGTTACGCACGTGAGAACTGCGGGGGAATCACCGGCGTCCGGCGTAAGCCTAACCTCCTGCCGTGAGGGCAACAGACTCCCGCTTCAGTTAAAGAGTGATGGCTGAAACCAAGATCCATGCAAACAAGCAAGCATAAGTTGCCATGACGAAATGCATCANAACAGACATCAGAAATGAGCAAACGGCACAACGCAATACTGCCGGTAACTGTGTTAAAACGTCATCCTCCAACACCGCAGAAGCTCCCGGGCATGCATCTGTCACTATTCCGTCCAATGTTGGCGAGAACAC]

[+] EMBL CF281481             [TCCACCGTGGTCTCCTCCTCCTCCTCCTCTCCACCCGCATCCGTGGCTCCGGTTGCGCTGCTCGGGAGCCCTCGCGGCTTTCTAGGAGGTCGCTGGAGCGGCCGATTAGAGGGGCCAGCGCCGGCGGCGTCGGATTCGGCGCCTCTTCCGAGACAGGGAGTAGCATTCACTTCCCTCCGTCCTTACGTCTGCGGGTTACGCACGTGAGAACTGCGGGGGAATCACCGGCGTCCGGCGTAAGCCTAACCTCCTGCCGTGAGGGCAACAGACTCCCGCTTCAGTTAAAGAGTGATGGCTGAAACCAAGATCCATGCAAACAAGCAAGCATAAGTTGCCATGACGAAATGCATCANAACAGACATCAGAAATGAGCAAACGGCACAACGCAATACTGCCGGTAACTGTGTTAAAACGTCATCCTCCAACACCGCAGAAGCTCCCGGGCATGCATCTGTCACTATTCCGTCCAATGTTGGCGAGAACAC]


>consensus_13302#3 TCCACCGTGGTCTCCTCCTCCTCCTCCTCTCCACCCGCATCCGTGGCTCCGGTTGCGCTG CTCGGGAGCCCTCGCGGCTTTCTAGGAGGTCGCTGGAGCGGCCGATTAGAGGGGCCAGCG CCGGCGGCGTCGGATTCGGCGCCTCTTCCGAGACAGGGAGTAGCATTCACTTCCCTCCGT CCTTACGTCTGCGGGTTACGCACGTGAGAACTGCGGGGGAATCACCGGCGTCCGGCGTAA GCCTAACCTCCTGCCGTGAGGGCAACAGACTCCCGCTTCAGTTAAAGAGTGATGGCTGAA ACCAAGATCCATGCAAACAAGCAAGCATAAGTTGCCATGACGAAATGCATCANAACAGAC ATCAGAAATGAGCAAACGGCACAACGCAATACTGCCGGTAACTGTGTTAAAACGTCATCC TCCAACACCGCAGAAGCTCCCGGGCATGCATCTGTCACTATTCCGTCCAATGTTGGCGAG AACAC



consensusID : consensus_13302#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 424
fasta sequence
                              [CTCCTCCTCCTCCTCTCCACCCGCATCCGTGGCTCCGGTTGCGCTGCTCGGGAGCCCTCGCGGCTTTNTAGGAGGTCGCTGGAGCGGCCGATTAGAGGGGCCAGCGCCGGCGGCGTCGGATTCGGCGCCTCTTCCGAGACAGGGAGTAGCATTCACTTCCCTCCGTCCTTACGTCTGCGGATTACGCACGTGAGAACTGCGGGGGAATCACCGGCGTCCGGCGTAAGCCTAACCTCCTGCCGTGAGGTGATTTTATTTCGTTCAAGTTTAAATACTTTTATATTTAAATTTTTTTTATATTATTACATTGAATATATGTACGCACTCTGATGGAGAAACTATCTTTGATCGGTCGGTCAAAATCCNCAATAGTCAGGTTGCAATAAAAAACTGCTGGTTAAGTTTAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU081565             [CTCCTCCTCCTCCTCTCCACCCGCATCCGTGGCTCCGGTTGCGCTGCTCGGGAGCCCTCGCGGCTTTNTAGGAGGTCGCTGGAGCGGCCGATTAGAGGGGCCAGCGCCGGCGGCGTCGGATTCGGCGCCTCTTCCGAGACAGGGAGTAGCATTCACTTCCCTCCGTCCTTACGTCTGCGGATTACGCACGTGAGAACTGCGGGGGAATCACCGGCGTCCGGCGTAAGCCTAACCTCCTGCCGTGAGGTGATTTTATTTCGTTCAAGTTTAAATACTTTTATATTTAAATTTTTTTTATATTATTACATTGAATATATGTACGCACTCTGATGGAGAAACTATCTTTGATCGGTCGGTCAAAATCCNCAATAGTCAGGTTGCAATAAAAAACTGCTGGTTAAGTTTAAAAAAAAAAAAAAAAAAA]


>consensus_13302#4 CTCCTCCTCCTCCTCTCCACCCGCATCCGTGGCTCCGGTTGCGCTGCTCGGGAGCCCTCG CGGCTTTNTAGGAGGTCGCTGGAGCGGCCGATTAGAGGGGCCAGCGCCGGCGGCGTCGGA TTCGGCGCCTCTTCCGAGACAGGGAGTAGCATTCACTTCCCTCCGTCCTTACGTCTGCGG ATTACGCACGTGAGAACTGCGGGGGAATCACCGGCGTCCGGCGTAAGCCTAACCTCCTGC CGTGAGGTGATTTTATTTCGTTCAAGTTTAAATACTTTTATATTTAAATTTTTTTTATAT TATTACATTGAATATATGTACGCACTCTGATGGAGAAACTATCTTTGATCGGTCGGTCAA AATCCNCAATAGTCAGGTTGCAATAAAAAACTGCTGGTTAAGTTTAAAAAAAAAAAAAAA AAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13302#0      ACTTCCCTCCGACCTTACGTCTGCGGATTACGCACGTGAGAACTGCGGGGGAATCACCGG 60
consensus_13302#1      ------------------------------------------------------------
consensus_13302#2      ------------------------------------------------------------
consensus_13302#3      ------------------------------------------------------------
consensus_13302#4      ------------------------------------------------------------
                                                                                   

consensus_13302#0      CGTCCGGCGTAAGCCTAACCTCCTGCCGTGAGGTGATTTTATTTCGTTCAAGTTTAAATA 120
consensus_13302#1      ------------------------------------------------------------
consensus_13302#2      ------------------------------------------------------------
consensus_13302#3      ------------------------------------------------------------
consensus_13302#4      ------------------------------------------------------------
                                                                                   

consensus_13302#0      CTTTTATATTTAAATTTTTTTTATATTATTACATTGAATATATGTACGCACTCTGATGGA 180
consensus_13302#1      ------------------------------------------------------------
consensus_13302#2      ------------------------------------------------------------
consensus_13302#3      ------------------------------------------------------------
consensus_13302#4      ------------------------------------------------------------
                                                                                   

consensus_13302#0      GAAACTATCTTTGATCGGTCGGTCAAAATCCACAATAGTCAGGTTGCAATAAAAAACTGC 240
consensus_13302#1      ------------------------------------------------------------
consensus_13302#2      ------------------------------------------------------------
consensus_13302#3      ------------------------------------------------------------
consensus_13302#4      ------------------------------------------------------------
                                                                                   

consensus_13302#0      TGGTTAAGTTTAGAGCTATTTATTTTAAGTAAATTTCACAAAACTACAGGTATTTTTCAC 300
consensus_13302#1      ------------------------------------------------------------
consensus_13302#2      ------------------------------------------------------------
consensus_13302#3      ------------------------------------------------------------
consensus_13302#4      ------------------------------------------------------------
                                                                                   

consensus_13302#0      AATTTATCACAAAAATACATATTTAAGATCTTGTTTTATTAAACTATAGATTTAGTGTCT 360
consensus_13302#1      ------------------------------------------------------------
consensus_13302#2      ------------------------------------------------------------
consensus_13302#3      ------------------------------------------------------------
consensus_13302#4      ------------------------------------------------------------
                                                                                   

consensus_13302#0      ACTTTATCACAAAACTACAGGTACTTTATATAATCTATCACAAAACTACATATTTAAGAA 420
consensus_13302#1      ------------------------------------------------------------
consensus_13302#2      ------------------------------------------------------------
consensus_13302#3      ------------------------------------------------------------
consensus_13302#4      ------------------------------------------------------------
                                                                                   

consensus_13302#0      TTTATTTCACAAAACTATAGATTTAGTGTATTCGTCTATCCCAGAACTACACATTTAGTG 480
consensus_13302#1      ------------------------------------------------------------
consensus_13302#2      ------------------------------------------------------------
consensus_13302#3      ------------------------------------------------------------
consensus_13302#4      ------------------------------------------------------------
                                                                                   

consensus_13302#0      TCTTCTTTTATCACAAAACTATAGGTTTAGTGTCTCCATTATCACAAAACTACAGGTTTT 540
consensus_13302#1      ----------------------------------------------------------TT 2
consensus_13302#2      ---------------------------------------------------AGCCACGTA 9
consensus_13302#3      ------------------------------------------------------------
consensus_13302#4      ------------------------------------------------------------
                                                                                   

consensus_13302#0      AACAACGCTAA--AACATATAGTTTTGTGATAAATGAAGATATTAAATATGTAGTTTTGT 598
consensus_13302#1      AACAACGATAA--AACATATAGTTTTGTGATAAATGAAGATATTAAATATGTAGTTTTGT 60
consensus_13302#2      ATCTGCGCGAGCCACCATGCTAGTTTATCATAAAACTAAATATTTAAGAGCTTGTTTCAC 69
consensus_13302#3      ------------------------------TCCACCGTGGTCTCCTCCTCCTCCTCCTCT 30
consensus_13302#4      --------------------------------------------CTCCTCCTCCTCCTCT 16
                                                                          *  *     

consensus_13302#0      GATATATTGTGCAAAGTGCC--TGTAGTTTTGTGATAAACGTAGACACTAAAT-CTATAG 655
consensus_13302#1      GATATATTGTGCAAAGTGCC--TGTAGTTTTGTGATAANCGTAGACACTAAAT-CTATAG 117
consensus_13302#2      AAAACTAAAGATTTAGTGTC--TCCGTTTATCACAAAACTACAAGTACTTTGTACAATAG 127
consensus_13302#3      CCACCCGCATCCGTGGCTCCGGTTGCGCTGCTCGGGAGCCCTCGCGGCTTTCT--AGGAG 88
consensus_13302#4      CCACCCGCATCCGTGGCTCCGGTTGCGCTGCTCGGGAGCCCTCGCGGCTTTNT--AGGAG 74
                                      *   *  *     *       *          **   *     **

consensus_13302#0      TTTTCTTAAACAAGCTTTTAAATATGTAGTTTTGTGATAGATCGTACAAACTATATGTAG 715
consensus_13302#1      TTTTTTTAAACAAGCTTTTAAATATGTAGTTTTGTGATAGATCGTACAAACTATATGTAG 177
consensus_13302#2      ATCACAAAACTACAGATTTAAGAATTT-GTTTCATAAAACTATAGATTTAGTGTATTCGT 186
consensus_13302#3      GTCGCTGGAGCGGCCGATTAGAGGGGCCAGCGCCGGCGGCGTCGGATTCGGCGCCTCTTC 148
consensus_13302#4      GTCGCTGGAGCGGCCGATTAGAGGGGCCAGCGCCGGCGGCGTCGGATTCGGCGCCTCTTC 134
                        *      *        ***                         *         *    

consensus_13302#0      TTTTATGAAATTTACTCTTTTTTTTATCTTTAGTCTCGGTTGGTGTTAAAAGATCTTTAT 775
consensus_13302#1      TTTTATGAAATTTACTCTTTTTTTTATCTTTAGTCTCGGTTGGTGTTAAAAGATCTTTAT 237
consensus_13302#2      TTATCACAGAACTACACATTTAGT-GTCTTTATT---------TATCACAAAAC------ 230
consensus_13302#3      CGAGACAGGGAGTA-GCATTCACTTCCCTCCGTCC----------TTACGTC-------- 189
consensus_13302#4      CGAGACAGGGAGTA-GCATTCACTTCCCTCCGTCC----------TTACGTC-------- 175
                                   **  * **   *   **                * *            

consensus_13302#0      TACAGCAATCGAGACTAAAGATCTATTTTTAGTCCCGGTTGGTAACATCAACCGAAACAA 835
consensus_13302#1      TACAGCAATCGAGACTAAAGATCTATTTCTAGTCCCGGTTGGTAACATCAACCGAAACAA 297
consensus_13302#2      TACAAATTTAGTGTTTTAAAACCTATAGTTTTGTGATAATGGAGACACTAAACCTG-TAG 289
consensus_13302#3      TGCGGGTTACGCACGTGAGAACTGCGGGGGAATCACCGGCGTCCGGCGTAAGCC---TAA 246
consensus_13302#4      TGCGGATTACGCACGTGAGAACTGCGGGGGAATCACCGGCGTCCGGCGTAAGCC---TAA 232
                       * *       *    * *  *                   *        ** *     * 

consensus_13302#0      AAGATCGGCATGCGCGGCGAAGAGTACAAGGCATGTGCAAGATCGAGGAGGAGACGGGTG 895
consensus_13302#1      AAGATCGGCATGCGCGGCGAAGAGTACAAGGCATGTGCAAGATCGAGGAGGAGACGGGTG 357
consensus_13302#2      TTTTGTGATAAATGAAGATATTAAATCTGTAGTTTTGTAAAGCAAGTTCTTAAATATGTA 349
consensus_13302#3      CCTCCTGCCGTGAGGGCAACAGACTCCCGCTTCAGTTAAAGAGTGATGGCTGAAACCA-A 305
consensus_13302#4      CCTCCTGCCGTGAGGTGATTTTATTTC-GTTCAAGTTTAAA---TACTTTTATATTTA-A 287
                             *      *        *   *        *  **             *      

consensus_13302#0      GCCTTATCTCTTCCTCTCTAACCT---TATCTCTTCCTCTTCCTTCTCTCCTTTTAACTC 952
consensus_13302#1      GCCTTATCTTTTCCTCTCTAACCT---TATCTTTTCCTCTTCCTTTTCTCCTTTTAACTC 414
consensus_13302#2      GTTTTATAATATATTGTGTAAAGTACATGTAGTTTTGTGATAAACGAAGACATTGAATCT 409
consensus_13302#3      GATCCATGCAAACAAGCAAGCATAAGTTGCCATGACGAAATGCATCANAACAGACATCAG 365
consensus_13302#4      ATTTTTTTTATATTATTA--CATTGAATATATGTACGCACTCTGATGGAGAAACTATCTT 345
                             *                    *            *              *    

consensus_13302#0      CTCTC--CTCCTTTCCCTCCCCCATCATCCCCC---CTATGATGGAT-GAGCCGGGCGGC 1006
consensus_13302#1      CTCTC--CTCCTTTCCCTCCCCCATCATCCCCA---CTATGATGGAT-GAGCCGGGCGGC 468
consensus_13302#2      GTATT--TTTGTGAAACAAGTTCTTAATCTGTAGTTTTGTGATAAATCGTGCAAAGTATC 467
consensus_13302#3      AAATGAGCAAACGGCACAACGCAATACTGCCGGTAACTGTGTTAAAA--CGTCATCCTCC 423
consensus_13302#4      TGATCGGTCGGTCAAAATCCNCAATAGT-CAGGT---TGCAATAAAA--AACTGCTGGTT 399
                          *                    *  *         *    *  *              

consensus_13302#0      CG-GGCAGCGCGGAGGGCCGGGCGGCCGGAGGCCTCGCGGCGGCGGGCGGCGTGGGAGCA 1065
consensus_13302#1      CG-GGCAGCGCGGAGGGCCGGGCGGCCGGAGGCCTCGCGGCGGCGGGCGGCGTGGGAGCA 527
consensus_13302#2      TGTAGTTTTACGAAAGAGTGAATTGC-ATTGGCGGTACACGAATTTGTCAGGTGGGTGCA 526
consensus_13302#3      ---AACACCGCAGAAGCTCCCGGGCATGCATCTGTCACTATTCCGTCCAATGTTGGCGAG 480
consensus_13302#4      ---AAGTTTAAAAAAAAAAAAAAAAAAA-------------------------------- 424
                                    *                                              

consensus_13302#0      GGCTTTTTTTT-CTTTTTTTTAGAATTTATGATTCGGATCTGTGTATTTGATTTGTGTGT 1124
consensus_13302#1      GGCTTTTTTTTTCTTTTTTTTAGAATTTATGATTCGGATCTGTGTATTTGATTTGTGTGT 587
consensus_13302#2      ATCTAGTGCATGAACTTATAAAATGCTCATGTT---GGTGCATGAACTT----------- 572
consensus_13302#3      AACAC------------------------------------------------------- 485
consensus_13302#4      ------------------------------------------------------------
                                                                                   

consensus_13302#0      GATGTGAATATGTGATGTATTGTGATGAATTTTGTAGAAGTTGTGATGTAATTTTTTTTA 1184
consensus_13302#1      GATAAGGATATGTGATGTATTGTGATGAAAAA-AAAAAAACTTTAAAGGA---------- 636
consensus_13302#2      ------------------------------------------------------------
consensus_13302#3      ------------------------------------------------------------
consensus_13302#4      ------------------------------------------------------------
                                                                                   

consensus_13302#0      AGATTTTTGAAGTTTTTAAAGGGCCC 1210
consensus_13302#1      --------------------------
consensus_13302#2      --------------------------
consensus_13302#3      --------------------------
consensus_13302#4      --------------------------
                                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)