These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13308#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 600 fasta sequence [ACATTCGATCACATTCGGCTAGTAACCAAGCAGTTCTTACGCTAGAGCTAGCTCGAGCAATGGTGAAGTGGGCAGCTGTGATGGAGATGCTTCTGCTGACGGCAGCAGCGACGGCGGTAGCGGTGGTGGCGGCGCAGTGTGACCCTGAGCAGCTATCGGCGTGCGTGA-CCCGATCTTCTACGGGACGGCGCCATCAGAGTCGTGCTGCTCCAACCTACGCGCACAGCAGAAGGAGGGGTGCCTCTGCC-AGTACGCGAAAGACCCGACGTACGCGTCCTACGTCAACAACACCAACGCACGCAAGACCATCGCCGCCTGCGGCA-TCCCCATTCCCAGCTGC-TAGGCTCGATCT-CCCGCCGCCGCCGGCCATGATGCGTACGT-GGCATATATACGCGT-GGTGTGTACGTGCGCTTGAAGAAAAGGGCGTGAGTTTGAATTAATAATTATCCAGTACGCGATGTTTGATCGATCGATGATGTGCCTTTTTTTTTTGGTATTTGAAGTTTGAACTCTGAATTTCATCTTGTGTTAATTGGAGTATGATAGCTGTGTGTACATTCGTTTTGGAGGTAGAGGCCGGTTTAATTAAAAAAAAAAAAA] [+] EMBL AK062529 [ACATTCGATCACATTCGGCTAGTAACCAAGCAGTTCTTACGCTAGAGCTAGCTCGAGCAATGGTGAAGTGGGCAGCTGTGATGGAGATGCTTCTGCTGACGGCAGCAGCGACGGCGGTAGCGGTGGTGGCGGCGCAGTGTGACCCTGAGCAGCTATCGGCGTGCGTGAGCCCGATCTTCTACGGGACGGCGCCATCAGAGTCGTGCTGCTCCAACCTACGCGCACAGCAGAAGGAGGGGTGCCTCTGCC AGTACGCGAAAGACCCGACGTACGCGTCCTACGTCAACAACACCAACGCACGCAAGACCATCGCCGCCTGCGGCA TCCCCATTCCCAGCTGC TAGGCTCGATCT CCCGCCGCCGCCGGCCATGATGCGTACGT GGCATATATACGCGT GGTGTGTACGTGCGCTTGAAGAAAAGGGCGTGAGTTTGAATTAATAATTATCCAGTACGCGATGTTTGATCGATCGATGATGTGCCTTTTTTTTTTGGTATTTGAAGTTTGAACTCTGAATTTCATCTTGTGTTAATTGGAGTATGATAGCTGTGTGTACATTCG ] [+] EMBL AU066167 [ ATTCGATCACATTCGGCTAGTAACCAAGCAGTTCTTACGCTAGAGCTAGCTCGAGCAATGGTGAAGTGGGCAGCTGTGATGGAGATGCTTCTGCTGACGGCAGCAGCGACGGCGGTAGCGGTGGTGGCGGCGCAGTGTGACCCTGAGCAGCTATCGGCGTGCGTGA CCCGATCTTCTACGGGACGGCGCCATCAGAGTCGTGCTGCTCCAACCTACGCGCACAGCAGAAGGAGGGGTGCCTCTGCC AGTACGCGAAAGACCCGACGTACGCGTCCTACGTCAACAACACCAACGCACGCAAGACCATGGCGGCCTNCGGNATTCCCCATTCCCAACTTCTTAGGnt ] [+] EMBL AU066346 [ ATTCGATCACATTCGGCTAGTAACCAAGCAGTTCTTACGCTAGAGCTAGCTCGAGCAATGGTGAAGTGGGCAGCTGTGATGGAGATGCTTCTGCTGACGGCAGCAGCGACGGCGGTAGCGGTGGTGGCGGCGCAGTGTGACCCTGAGCAGCTATCGGCGTGCGTAA CCCGATCTTCTACGGGACGGCGCCATCAGAGTCGTGCTGCTCCAACCTACGCGCACAGCAGAAGGAGGGGTGCCTCTGCC AGTACGCGAAAGACCCGACGTACGCGTCCTACGTCAACAACACCAACGCACGAAAGA ] [+] EMBL AU095292 [ TTCGGCTAGTAACCAAGCATTTCTTACGCTAGAGCTAGCTCGAGCAATGGTGAAGTGGGCAGCTGTGATGGAGATGCTTCTGCTGACGGCAGCAGCGACGGCGGTA CGGTGGTGGCGGCGCAGTGTGACCCTGAGCAGCTATCGGCGTGCGTGA CCCGATCTTCTACGGGACGGCGCCATCAGAGTCGTGCTGCTCCAACCTACGCGCACAGCAGAAGGAGGGGTGCCTCTGCC AGTACGCGAAAGACCCGACGTACGCGTCCTACGTCAACAACACCAACGCACGCAAGACCATCGCCGCCTGCGGCA TCCCCATTCCCAGCTGC TAGGCTCGATCT CCCGCCGCCGCCGGCCATGATGCGTACGT GGCATATATACGCGT GGTGTGTACGTGCGCTTGAAGAAAAAGGCGTGAG TTGAA TAAT ATTATCCAGTACGCGt ] [+] EMBL AU095295 [ TCGGCTAGTAACCAAGCATTTCTTACGCTAGAGCTAGCTCGAGCAATGGTGAAGTGGGCAGCTGTGATGGAGATGCTTCTGCTGACGGCAGCAGCGACGGCGGTA CGGTGGTGGCGGCGCAGTGTGACCCTGAGCAGCTATCGGCGTGCGTGA CCCGATCTTCTACGGGACGGCGCCATCAGAGTCGTGCTGCTCCAACCTACGCGCACAGCAGAAGGAGGGGTGCCTCTGCC AGTACGCGAAAGACCCGACGTACGCGTCCTACGTCAACAACACCAACGCACGCAAGACCATCGCCGCCTGCGGGA TCCCCATTCCCAGCTGC TAGGCTCGATCTCCCCGCCGCCGCCGGCCATGATGCGTACGT GGCATATATACGCGTGGGTGTGTACGTGCGCTTGAAGAAAA GGCGT ANTTTG ATTAATAATTATCCA TACGCG ] [+] EMBL C74648 [ TCGGCTAGTAACCAAGCAGTTCTTACGCTAGAGCTAGCTCGAGCAATGGTGAAGTGGGCAGCTGTGATGGAGATGCTTCTGCTGACGGCAGCAGCGACGGCGGTAGCGGTGGTGGCGGCGCAGTGTGACCCTGAGCAGCTATCGGCGTGCGTGA CCCGATCTTCTACGGGACGGCGCCATCAGAGTCGTGCTGCTCCAACCTACGCGCACAGCAGAAGGAGGGGTGCCTCTGCC AGTACGCAAAAGACCCGACGTACGCGTCCTACGTCAACAACACCAACGCACGCAAGACCATNGCCGCCTGNGG A TCCCCAT ] [+] EMBL AU101533 [ TCGGCTAGTAACCAAGCATTTCTTACGCTAGAGCTAGCTCGAGCAATGGTGAAGTGGGCAGCTGTGATGGAGATGCTTCTGCTGACGGCAGCAGCGACGGCGGTAGCGGTGGTGGCGGCGCAGTGTGACCCTGAGCAGCTATCGGCGTGCGTGAGCCCGATCTTCTACGGGACGGCGCCATCAGAGTCGTGCTGCTCCAACCTACGCGCACAGCAGAAGGAGGGGTGCCTCTGCC AGTACGCGAAAGACCCGACGTACGCGTCCTACGTCAACAACACCAACGCACGCAAGACCATCGCCGCCTGCGGCA TCCCCATTCCCAGCTGC TAGGCTCGATCT CCCGCAGCCGCCGGCCATGATGCGTACGTGGGCATATATACGCGT GGTGTGTACGTGCGCTTGAAGAAAAGGGCGTGAGTTTGAATTAATAATTATCCAGTACG ] [+] EMBL AU101534 [ cCGGCGTGCGTGAGCCCGATCTTCTACGGGACGGCGCCATCAGAGTCGTGCTGCTCCAACCTACGCGCACAGCAGAAGGAGGGGTGCCTCTGCC AGTACGCGAAAGACCCGACGTACGCGTCCTACGTCAACAACACCAACGCACGCAAGACCATCGNC CCTGCGGCA TCCCCATTCCCAGCTGC TAGGCTCGATCT CCCGCCGCCGCCGGCCATGATGCGTACGT GGCATATATACGCGT GGTGTGTACGTGCGCTTGAAGAAAAGGGCGTGAGTTTGAATTAATAATTATCCAGTACGCGATGTTTGATCGATCGATGATGTGCCTTTTTTTTTTGGTATTTGAAGTTTGAACTCTGAATTTCATCTTGTGTTAATTGGAGTATGATAGCTGTGTGTACATTCGTTTTGGAGGTAGAGGCCGGTTTAATTAAAAAAAAAAAAA] [+] EMBL AU031210 [ cGCCTCTGCCNAGTACGCGAAAGACCCGACGTACGCGTCCTACGTCAACAACACCAACGCACGCAAGACCATCNTCCCCTGCGGCA TCCCCATTCCCAGCTGC TAGGCTCGATCT CCCGCCGCCGCCGGCCATGATGCGTACGT GGCATATATACGCNT GGTGTGTACGTGCGCTTGAAGAAAAGGGCGTGAGTTTGAATTAATAATTATCCAGTACGCGATGTTTGATCGATCGATGATGTGCCTTTTTTTTTTGGTATTTGAAGTTTGAACTCTGAATTTCATCTTGTGTTAATTGGAGTATGATAGCTGTGTGTACATTCGTTTTGGAGGTAGAGGCCGGTTTAATTAAAAAAAAAAAAA] [+] EMBL AU031205 [ CA TCCCCATTCCCAGCTGC TAGGNTCGATCT CCCGCCGCCGCCGGCCATGATGCGTACGT GGCATATATACGCGT GGTGTGTACGTGCGCTTGAAGAAAAGGGCGTGAGTTTGAATTAATAATTATCCANTACGCGATGTTTGATCGATCGATGATGTGCCTTTTTTTTTTGGTATTTGAAGTTTGAACTCTGAATTTCATCTTGTGTTAATTGGAGTATGATAGCTGTGTGTACATTCGTTTTGGAGGTAGAGGCCGGTTTAATTAAAAAAAAAAAAA] consensusID : consensus_13308#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 466 fasta sequence [CGATCACATTCGATCACATTCGGCTAGTAACCAAGCGGCGGTTCTTGCGCTAGCTAGCTCGAGCAATGGCGAAGTGGGCGGCTGCGATGGAGATGCTTCTGCTGGTGGTGGTGACCCCGGGCTGCTGTCGCCATGCGCGGCCCCGATCTTCTTCGGGACGGCGCCGTCGGCGTCGTGCTGCTCTAGCCTGAAAGCACAGCAGGGGTGCTTCTGCCAGTACGCGAAAGACCCGACGTACGCGTCCTACATCAACAGCACCAACGCACGCAAGATGATCGCCGCCTGCGGCATCCCCTTTCCCAACTGCAGCTAGGCTCCGTCGCCGCCGTTCACCGGTGCGGGCCATGATGTGTGGCAACATATATAAATATATGGTGTACTGCGTGCTTGAATAAAATAAAGGACAATGTGTGGAAACATATATAAATATATGGTGTACTGTGTATTTGAATAATATAAAGGATGT] [+] EMBL AK063117 [CGATCACATTCGATCACATTCGGCTAGTAACCAAGCGGCGGTTCTTGCGCTAGCTAGCTCGAGCAATGGCGAAGTGGGCGGCTGCGATGGAGATGCTTCTGCTGGTGGTGGTGACCCCGGGCTGCTGTCGCCATGCGCGGCCCCGATCTTCTTCGGGACGGCGCCGTCGGCGTCGTGCTGCTCTAGCCTGAAAGCACAGCAGGGGTGCTTCTGCCAGTACGCGAAAGACCCGACGTACGCGTCCTACATCAACAGCACCAACGCACGCAAGATGATCGCCGCCTGCGGCATCCCCTTTCCCAACTGCAGCTAGGCTCCGTCGCCGCCGTTCACCGGTGCGGGCCATGATGTGTGGCAACATATATAAATATATGGTGTACTGCGTGCTTGAATAAAATAAAGGACAATGTGTGGAAACATATATAAATATATGGTGTACTGTGTATTTGAATAATATAAAGGATGT] consensusID : consensus_13308#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence [TGACCCTGAGCAGCTATCGGCGTGCGTGAGCCCGATCTTCTACGGACGGCGCCATCAGAGTCGTGCTGCTCCAACTTACGCGCACAGCAGAAGGAGGGGTGCCTCTGCCAGTACGCGAAAGACCCGACGTACGCGTCCTACGTCAACAACACCAACGCACGCAAGACCATCGCCGTGCGGCATCCCCATTCCCAGCTGCTAGGCTCGATCTCCCGCCGCCGCCGGCCATGATGCGTACGTGGCATATATACGCGTGGTGTGTACGTGCGCTTGAAGAAAAGGGCGTGAGTTTGAATTAATAATTATCCAGTACGCGATGTTTGATCGATCGATGATGTGCCTTTTTTTTTTGGTATTTGAAGTTTGAACTCTGAATTTCATCTTGTGTTAATTGGAGTAAAAAAAAAAAA] [+] EMBL AU161979 [TGACCCTGAGCAGCTATCGGCGTGCGTGAGCCCGATCTTCTACGGACGGCGCCATCAGAGTCGTGCTGCTCCAACTTACGCGCACAGCAGAAGGAGGGGTGCCTCTGCCAGTACGCGAAAGACCCGACGTACGCGTCCTACGTCAACAACACCAACGCACGCAAGACCATCGCCGTGCGGCATCCCCATTCCCAGCTGCTAGGCTCGATCTCCCGCCGCCGCCGGCCATGATGCGTACGTGGCATATATACGCGTGGTGTGTACGTGCGCTTGAAGAAAAGGGCGTGAGTTTGAATTAATAATTATCCAGTACGCGATGTTTGATCGATCGATGATGTGCCTTTTTTTTTTGGTATTTGAAGTTTGAACTCTGAATTTCATCTTGTGTTAATTGGAGTAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13308#0 ACATTCGATCACATTCGGCTAGTAACCAAGCAGTTCTTACGCTAGAGCTAGCTCGAGCAA 60 consensus_13308#2 ------------------------------------------------------------ consensus_13308#1 ----------------------------CGATCACATTCGATCACATTCGGCTAGTAACC 32 consensus_13308#0 TGGTGAAGTGGGCAGCTGTGATGGAGATGCTTCTGCTGACGGCAGCAGCGACGGCGGTAG 120 consensus_13308#2 ------------------------------------------------------------ consensus_13308#1 AAGCGGCGGTTCTTGCGCTAGCTAGCTCGAGCAATGGCGAAGTGGGCGGCTGCGATGGAG 92 consensus_13308#0 CGGTGGTGGCGGCGCAGTGTGACCCTGAGCAGCTATCGGCGTGCGTGA-CCCGATCTTCT 179 consensus_13308#2 -------------------TGACCCTGAGCAGCTATCGGCGTGCGTGAGCCCGATCTTCT 41 consensus_13308#1 ATGCTTCTGCTGGTGGTGGTGACCCCGGGCTGCTGTCGCCATGCGCGGCCCCGATCTTCT 152 ****** * ** *** *** * **** * *********** consensus_13308#0 ACGGGACGGCGCCATCAGAGTCGTGCTGCTCCAACCTACGCGCACAGCAGAAGGAGGGGT 239 consensus_13308#2 ACGG-ACGGCGCCATCAGAGTCGTGCTGCTCCAACTTACGCGCACAGCAGAAGGAGGGGT 100 consensus_13308#1 TCGGGACGGCGCCGTCGGCGTCGTGCTGCTCTAGCCTGAAAGCACAGC------AGGGGT 206 *** ******** ** * ************ * * * ******* ****** consensus_13308#0 GCCTCTGCCAGTACGCGAAAGACCCGACGTACGCGTCCTACGTCAACAACACCAACGCAC 299 consensus_13308#2 GCCTCTGCCAGTACGCGAAAGACCCGACGTACGCGTCCTACGTCAACAACACCAACGCAC 160 consensus_13308#1 GCTTCTGCCAGTACGCGAAAGACCCGACGTACGCGTCCTACATCAACAGCACCAACGCAC 266 ** ************************************** ****** *********** consensus_13308#0 GCAAGACCATCGCCGCCTGCGGCATCCCCATTCCCAGCTGC---TAGGCTCGATCTCC-- 354 consensus_13308#2 GCAAGACCATCGCCG--TGCGGCATCCCCATTCCCAGCTGC---TAGGCTCGATCTCC-- 213 consensus_13308#1 GCAAGATGATCGCCGCCTGCGGCATCCCCTTTCCCAACTGCAGCTAGGCTCCGTCGCCGC 326 ****** ******* ************ ****** **** ******* ** ** consensus_13308#0 ----CGCCGCCGCCGGCCATGATGCGTACGTGGCATATATACGCGTGGTGTGTAC-GTGC 409 consensus_13308#2 ----CGCCGCCGCCGGCCATGATGCGTACGTGGCATATATACGCGTGGTGTGTAC-GTGC 268 consensus_13308#1 CGTTCACCGGTGCGGGCCATGATGTGTG-GCAACATATATAAATATATGGTGTACTGCGT 385 * *** ** ********** ** * ******** * ****** * * consensus_13308#0 GCTTGAAGAAAAGGGCGTGAGTTTGAATTAATAATTATCCAGTACGCGATGTTTGATCGA 469 consensus_13308#2 GCTTGAAGAAAAGGGCGTGAGTTTGAATTAATAATTATCCAGTACGCGATGTTTGATCGA 328 consensus_13308#1 GCTTGAATAAAATAAAG------------GACAAT------GTGTGGAAACATATATAAA 427 ******* **** * * *** ** * * * ** * consensus_13308#0 TCGATGATGTGCCTTTTTTTTTTGGTATTTGAAGTTTGAACTCTGAATTTCATCTTGTGT 529 consensus_13308#2 TCGATGATGTGCCTTTTTTTTTTGGTATTTGAAGTTTGAACTCTGAATTTCATCTTGTGT 388 consensus_13308#1 TATATGGTGTACTGTGTATTTGAATAATATAAAGGATGT--------------------- 466 * *** *** * * * *** ** * *** ** consensus_13308#0 TAATTGGAGTATGATAGCTGTGTGTACATTCGTTTTGGAGGTAGAGGCCGGTTTAATTAA 589 consensus_13308#2 TAATTGGAGTAAAAAAAAAAAA-------------------------------------- 410 consensus_13308#1 ------------------------------------------------------------ consensus_13308#0 AAAAAAAAAAA 600 consensus_13308#2 ----------- consensus_13308#1 ----------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||