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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13326#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 626 fasta sequence
[ACTGAAGGAGTAGAAAACCCACCGACGACGACGACGAAACCCT-AGC-CTTGCGGATCGATCGGCGGCGGCGGCCATGGAGAGCTGGGCAAGCTGGGTGGGCGCCAGCGTCACCTCCGCCTTCTTCGCCTCCCTCGAGCGCTGCTCCTGCATCAACCTCTCCACCGACGACGACGACGACCTCCCCCACGCCCACCAATCCGAGGACCCGCCCCCTCGTGATCTCCGAAGACGACGCCCCCGCCCAGCCCGACGCCCCTCCCGATCCCTCCGACGCCCCCTCACAGACATAAAGGACGACGACTACTAGCTCCCGGCCCATAGTACACCCCCCCCGTTACTCTATCCCCCGACTGCTGTCACGCCCATCTCCTGCTCCCCCCTCTCCCCACCCTTCCCCTCTGCCCCCCCCCGCCCAACCCCCCCCCTTCCCCCAAACACTCAACCATTATAGCTTCTTTCTACCGAACGTCCGACTCATTTTGCTCCTTCACCCGCCCCGGACCCGAGACCGGCACCCCCCGTACTTCTCTCACACATGCCGCCCACTAGTTGCCTCCCCGCACTACCACCCACCCCACCACTCTCCTCTGTTGTGCGCCGTCTACTCCGCGCTACAATCCGTGCCA]
[+] EMBL CF339908 [ACTGAAGGAGTAGAAAACCCACCGACGACGACGACGAAACCCT AGCACTTGC GATCGATCGGCGGCGGCGGCCATGGAGAGCTGGGCAAGCTGGGTGGGCGCCAGCGTCACCTCCGCCTTCTTCGCCTCCCTCGAGCGCTGCTCCTGCATCAACCTCTCCACCGACGACGACGACG ]
[+] EMBL CF338395 [ AGGAGTAGAAAACCCACCGACGACGACGACGAAACCCTNAGC C TGCGGATCGATCGGCGGCGGCGGCCATGGAGAGCTGGGCAAGCTGGGTGG ]
[+] EMBL CA754957 [ AACCCT AGC CTTGCGGATCGATCGGCGGCGGCGGCCATGGAGAGCTGGGCAAGCTGGGTGGGCGCCAGCGTCACCTCCGCCTTCTTCGCCTCCCTCGAGCGCTGCTCCTGCATCAACCTCTCCTCCCACCACCACCACCACCTCCCCCACGCCCACCAATCCGAGGACCCGCCCCCTCGTGATCTCCGAAGACGACGCCCCCGCCCAGCCCGACGCCCCTCCCGATCCCTCCGACGCCCCCTCACAGACATAAAGGACGACGACTACTAGCTCCCGGCCCATAGTACACCCCCCCCGTTACTCTATCCCCCGACTGCTGTCACGCCCATCTCCTGCTCCCCCCTCTCCCCACCCTTCCCCTCTGCCCCCCCCCGCCCAACCCCCCCCCTTCCCCCAAACACTCAACCATTATAGCTTCTTTCTACCGAACGTCCGACTCATTTTGCTCCTTCACCCGCCCCGGACCCGAGACCGGCACCCCCCGTACTTCTCTCACACATGCCGCCCACTAGTTGCCTCCCCGCACTACCACCCACCCCACCACTCTCCTCTGTTGTGCGCCGTCTACTCCGCGCTACAATCCGTGCCA]
consensusID : consensus_13326#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 544 fasta sequence
[TTCCCTTTGACTAAACTAGACTCNCCCACCGACGACGACGACGAAACCTAGCCTTGCGGATNGATCGGCGGCGGCGGCCATGGANAGCTGGGCAAGCTGGGTGGGCGCCAGCGTCACCTCCGCCTTCTTCGCCTCCCTCGAGCGCTGCTCCTGCATCNACCTCTCCACCGACNACNACNACNACCTCGCCGACGCCCACGAATCCNAGGACCGCCCCCTCGTGCTCTCCGANGCCAACGCCCACGCCCACACCGANGCCCATCCCGATCCCCCCGCCGCCGCCGCNGACTCCGACGAGCACAAGGACGACNAGCTCCCNCCCGTTTGACTACGCTACTGTTNCTTGAGACNCCGCCNGCTACTNTGTGTCTTGGTCTTCTCCATGTCTTCCNNTTCCATCTGCTAGTGAATGCTATCTTTAGCCATTGTGACAAACCAAACNNTNAACCATCTGTCTTTCCTATCGTGATTCTGGNCTCCGGCTGTGAATATCCGTGTGCCTTTTGTTCTGGATTGCGTTTTATCTAATCNATCCNATCNTCGT]
[+] EMBL BE228870 [TTCCCTTTGACTAAACTAGACTCNCCCACCGACGACGACGACGAAACCTAGCCTTGCGGATNGATCGGCGGCGGCGGCCATGGANAGCTGGGCAAGCTGGGTGGGCGCCAGCGTCACCTCCGCCTTCTTCGCCTCCCTCGAGCGCTGCTCCTGCATCNACCTCTCCACCGACNACNACNACNACCTCGCCGACGCCCACGAATCCNAGGACCGCCCCCTCGTGCTCTCCGANGCCAACGCCCACGCCCACACCGANGCCCATCCCGATCCCCCCGCCGCCGCCGCNGACTCCGACGAGCACAAGGACGACNAGCTCCCNCCCGTTTGACTACGCTACTGTTNCTTGAGACNCCGCCNGCTACTNTGTGTCTTGGTCTTCTCCATGTCTTCCNNTTCCATCTGCTAGTGAATGCTATCTTTAGCCATTGTGACAAACCAAACNNTNAACCATCTGTCTTTCCTATCGTGATTCTGGNCTCCGGCTGTGAATATCCGTGTGCCTTTTGTTCTGGATTGCGTTTTATCTAATCNATCCNATCNTCGT]
consensusID : consensus_13326#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 541 fasta sequence
[CGAGCGACGAMGAAACCCTAGCCTTGCGGATCGATCGGCGGCSGCSGCCATGGAGAGCTGGGCAAGCTGGGTGGGCGCCAGCGTCACCTCCGCCTTCTTCGCCTCCCTCGAGCGCTGCTCCTGCATCAACCTCTCCACCGACGACGACGACGACCTCGCCGACGCCCACGAATCCAAGGACCGCCCCCTCGTGCTCTCCGACGCCAACGCCCACGCCCACACCGACGCCCATCCCGATCCCCCCGCCGCCGCCGCCGACGCCGACAAGCACAAGGACGACAAGCTCCCGCCCGTATGACTACGCTACTGTTACTTGAGACGCCGCCTGCTAGTATGTGTCTTGGTCTTCTCCATGTCTTCCAATTCCATCTGCTAGTGAATGCTATCTTTAGCCATTGTGACAAACCAAACAATAAACCATCTGTCTTTCCTATCGTGA-TTT-CTGCCTCCGGCTGTGAATATCCGTGTGCCTTTTGTACTGGATTGCGTTATATCTAATCAATCAAATCATCGTATCTATTATTAAAAAAAAAAAAAAAAA]
[+] EMBL AA752423 [CGAGCGACGAMGAAACCCTAGCCTTGCGGATCGATCGGCGGCSGCSGCCATGGAGAGCTGGGCAAGCTGGGTGGGCGCCAGCGTCACCTCCGCCTTCTTCGCCTCCCTCGAGCGCTGCTCCTGCATCAACCTCTCCACCGACGACGACGACGACCTCGCCGACGCCCACGAATCCAAGGACCGCCCCCNNGTGCTCTCCGACGCCAACGCCCACGCCCACACCGACGCCCATCCCGATCCCCCCGCCGCCGCCGCCGACGCCGACAAGCACAAGGACGACAAGCTCCCGCCCGTATGACTACMCTACTGTTACTTGAG ]
[+] EMBL C98392 [ GGGCGCNAGCGTCACATCCGCCTTCTTCGCNTCCCTCGAGCGCTGCTCCTGCATCAACCTCTCCANCGACGACGACGACGACCTCGCCGACGCCCACGAATCCAAGGACCGCCCCCTCGTGCTCTCCGACGCCAACGCCCACGCCCACACCGACGCCCATCCCGATCCCCCCGCCGCCACCGCCGACGCCGACAAGCACAAGGACGACAAGCTCCCGCCCGTATGACTACGCTACTGTTACTTGAGACGCCGCCTGCTAGTATGTGTCTTGGTCTTCTCCATGTCTTCCAATTCCATCTGCTAGTGAATGNTATCTTTAGCCATTGTGACAAACCAAACAATAAACCATCTGTCTTTCCTATCGTGA TTTNCT CCTCCGGCTGTGAATATCCGTGTGCCTTTTGTACTGGATTGCGTTATATCTAATCAATCAAATCATCGTATCTATTATTAAAAAAAAAAAAAAAAA]
[+] EMBL BI797286 [ CGCCGACGCCCACGAATCCAAGGACCGCCCCCTCGTGCTCTCCGACGCCAACGCCCACGCCCACACCGACGCCCATCCCGATCCCCCCGCCGCCGCCGCCGACGCCGACAAGCACAAGGACGACAAGCTCCCGCCCGTATGACTACGCTACTGTTACTTGAGACGCCGCCTGCTAGTATGTGTCTTGGTCTTCTCCATGTCTTCCAATTCCATCTGCTAGTGAATGCTATCTTTAGCCATTGTGAC AACC AACAATAAACCATCTGTCTTTCCTATCGTGAGTTT CTGCCTCCGGCTGTGAATATCCGTGTGCCTTTTGTACTGGATTGCGTTATATCTAATCCATCCAATCATCGTATCTATTATTAAAAAAAAAA ]
[-] EMBL CA998181 [ GCCCCGTGGTGCTCTCTGACGCCAACGCCCACGCCCACACGGACGCCCATCCTGATCCCCCCGCCGCCGCCGCGGATGCCGACAAGCACAAGGACGACAAGCTCCCGCCCGTATGACTACGCTACTGTTACTTGAGACGCCGCCTGCTAGTATGTGTCTTGGTCTTCTCCATGTCTTCCAATTCCATCTGCTAGTGAATGCTATCTTTAGCCATTGTGACAAACCAAACAATAAACCATCTGTCTTTCCTATCGTGA TTT CTGCCTCCGGCTGTGAATATCCGTGTGCCTTTTGTACTGGATTGCGTTATATCTAATCAATCAAATCATCGTATCTATTATT ]
consensusID : consensus_13326#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 495 fasta sequence
[CTAAGCGGATCGATCGGCGGCGGCGGCCATGGANAGCTGGGCAAGCTGGGTGGGCGCCAGCGTCACCTCCGCCTTCTTCGCCTCCCTCGAGCGCTGCTCCTGCATCAACCTCTCCACCGACGACGACNACNACCTCGCCGACGCCCACGAATCCAANGACCGCCCCCTCGTGCTCTCCGACGCCAACGCCCACGCCCACACCGACGCCCATCCCGATCCCCCCGCCGCCGCCGCCGACGCCNACAAGCACAAGGACNANAAGTTTNTTTTTTTTTTNTTNCGCTACNGCACCNGAGACGCCGCCTGCTANTATGTGTCTTGGTCTTCTCCATGTCTTCCAATTCCATCTGCTANTGAATGCTATCTTTAGCCATTGTGACNAACAAACAATAAACCATCTGTCTTTCCTATCGTGANTTCTGCTCCCGCTGTGAATATCCNCCTTGCCTTTTGTACTGGGATTGCGTTATTTCTAATCCATCAAATCATCNTATC]
[+] EMBL AA751638 [CTAAGCGGATCGATCGGCGGCGGCGGCCATGGANAGCTGGGCAAGCTGGGTGGGCGCCAGCGTCACCTCCGCCTTCTTCGCCTCCCTCGAGCGCTGCTCCTGCATCAACCTCTCCACCGACGACGACNACNACCTCGCCGACGCCCACGAATCCAANGACCGCCCCCTCGTGCTCTCCGACGCCAACGCCCACGCCCACACCGACGCCCATCCCGATCCCCCCGCCGCCGCCGCCGACGCCNACAAGCACAAGGACNANAAGTTTNTTTTTTTTTTNTTNCGCTACNGCACCNGAGACGCCGCCTGCTANTATGTGTCTTGGTCTTCTCCATGTCTTCCAATTCCATCTGCTANTGAATGCTATCTTTAGCCATTGTGACNAACAAACAATAAACCATCTGTCTTTCCTATCGTGANTTCTGCTCCCGCTGTGAATATCCNCCTTGCCTTTTGTACTGGGATTGCGTTATTTCTAATCCATCAAATCATCNTATC]
consensusID : consensus_13326#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 234 fasta sequence
[ATGACTACGCTACTGTTACTTGAGACGCCGCCCTGCTAGTATGTGTCTTGGTCTTCTCCATGTCTTCCCATTCCACTCTGCTAGTGAATGCTATCTTTACCCCTTGTGACCAACCCAACCATAAACCACTCTGTCTTTTTTCCCCTTCATTTTTCCCGGCTAGATTCTGCCCTCCCGGCTGTGAATATCCGTGTCCCTTTTGTACTGGATTGCGTTATATCTAATCCATCCAAT]
[+] EMBL BI800030 [ATGACTACGCTACTGTTACTTGAGACGCCGCCCTGCTAGTATGTGTCTTGGTCTTCTCCATGTCTTCCCATTCCACTCTGCTAGTGAATGCTATCTTTACCCCTTGTGACCAACCCAACCATAAACCACTCTGTCTTTTTTCCCCTTCATTTTTCCCGGCTAGATTCTGCCCTCCCGGCTGTGAATATCCGTGTCCCTTTTGTACTGGATTGCGTTATATCTAATCCATCCAAT]
consensusID : consensus_13326#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 214 fasta sequence
[TNCGGATCGATCGGCGGCGGCGGCCATGGAGAGCTGGGCAAGCTGGGTGGGCGCCANNTCACCTCCGNCTTCTTCGCCTCCCTCGAGCGNTGCTCCTGCATCAACCTCTCCACCNACGACGACGACGACCTCGCCGACGCCCACGAATNCAAGGACCGACCNNTCAGTGCTNTCCGACGNCAACGACCACGCCCACACCGACGANCATCCCGAT]
[+] EMBL OSC30911 [TNCGGATCGATCGGCGGCGGCGGCCATGGAGAGCTGGGCAAGCTGGGTGGGCGCCANNTCACCTCCGNCTTCTTCGCCTCCCTCGAGCGNTGCTCCTGCATCAACCTCTCCACCNACGACGACGACGACCTCGCCGACGCCCACGAATNCAAGGACCGACCNNTCAGTGCTNTCCGACGNCAACGACCACGCCCACACCGACGANCATCCCGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13326#2 ------------------------------CGAGCGACGAMGAAACCCTAGCCTTGCGGA 30
consensus_13326#4 ------------------------------------------------------------
consensus_13326#3 ---------------------------------------------------CTAAGCGGA 9
consensus_13326#1 TTCCCTTTGACTAAACTAGACTCNCCCACCGACGACGACGACGAAACCTAGCCTTGCGGA 60
consensus_13326#0 ------ACTGAAGGAGTAGAAAACCCACCGACGACGACGACGAAACCCTAGCCTTGCGGA 54
consensus_13326#5 ------------------------------------------------------TNCGGA 6
consensus_13326#2 TCGATCGGCGGCSGCSGCCATGGAGAGCTGGGCAAGCTGGGTGGGCGCCAGCGTCACCTC 90
consensus_13326#4 ------------------------------------------------------------
consensus_13326#3 TCGATCGGCGGCGGCGGCCATGGANAGCTGGGCAAGCTGGGTGGGCGCCAGCGTCACCTC 69
consensus_13326#1 TNGATCGGCGGCGGCGGCCATGGANAGCTGGGCAAGCTGGGTGGGCGCCAGCGTCACCTC 120
consensus_13326#0 TCGATCGGCGGCGGCGGCCATGGAGAGCTGGGCAAGCTGGGTGGGCGCCAGCGTCACCTC 114
consensus_13326#5 TCGATCGGCGGCGGCGGCCATGGAGAGCTGGGCAAGCTGGGTGGGCGCCANN-TCACCTC 65
consensus_13326#2 CGCCTTCTTCGCCTCCCTCGAGCGCTGCTCCTGCATCAACCTCTCCACCGACGACGACGA 150
consensus_13326#4 ------------------------------------------------------------
consensus_13326#3 CGCCTTCTTCGCCTCCCTCGAGCGCTGCTCCTGCATCAACCTCTCCACCGACGACGACNA 129
consensus_13326#1 CGCCTTCTTCGCCTCCCTCGAGCGCTGCTCCTGCATCNACCTCTCCACCGACNACNACNA 180
consensus_13326#0 CGCCTTCTTCGCCTCCCTCGAGCGCTGCTCCTGCATCAACCTCTCCACCGACGACGACGA 174
consensus_13326#5 CGNCTTCTTCGCCTCCCTCGAGCGNTGCTCCTGCATCAACCTCTCCACCNACGACGACGA 125
consensus_13326#2 CGACCTCGCCGACGCCCACGAATCCAAGGACC-GCCCCCTCGTGCTCTCCGACGCCAACG 209
consensus_13326#4 ------------------------------------------------------------
consensus_13326#3 CNACCTCGCCGACGCCCACGAATCCAANGACC-GCCCCCTCGTGCTCTCCGACGCCAACG 188
consensus_13326#1 CNACCTCGCCGACGCCCACGAATCCNAGGACC-GCCCCCTCGTGCTCTCCGANGCCAACG 239
consensus_13326#0 CGACCTCCCCCACGCCCACCAATCCGAGGACCCGCCCCCTCGTGATCTCCGAAGACGACG 234
consensus_13326#5 CGACCTCGCCGACGCCCACGAATNCAAGGACCGACCNNTCAGTGCTNTCCGACGNCAACG 185
consensus_13326#2 CCCACGCCCACACCGACGCCCATCCCGATCCCCCCGCCGCCGCCGCCGACGCCGACAAGC 269
consensus_13326#4 ------------------------------------------------------------
consensus_13326#3 CCCACGCCCACACCGACGCCCATCCCGATCCCCCCGCCGCCGCCGCCGACGCCNACAAGC 248
consensus_13326#1 CCCACGCCCACACCGANGCCCATCCCGATCCCCCCGCCGCCGCCGCNGACTCCGACGAGC 299
consensus_13326#0 CCCCCGCCCAGCCCGACGCCCCTCCCGATCCCTCCGACGCCCCCTCACAGACATAAAGGA 294
consensus_13326#5 ACCACGCCCACACCGACGANCATCCCGAT------------------------------- 214
consensus_13326#2 ACAAGGACGACAAGCTCCCGCCCGTATGACTACGCTACTGTTACTTGAGACGCCGCC-TG 328
consensus_13326#4 -------------------------ATGACTACGCTACTGTTACTTGAGACGCCGCCCTG 35
consensus_13326#3 ACAAGGACNANAAGTTTNTTTTTTTTTTNTTNCGCTACNGC-ACCNGAGACGCCGCC-TG 306
consensus_13326#1 ACAAGGACGACNAGCTCCCNCCCGTTTGACTACGCTACTGTTNCTTGAGACNCCGCC-NG 358
consensus_13326#0 CGACGACTACTAGCTCCCGGCCCATAGTACACCCCCCCCGTTACTCTATCCCCCGAC-TG 353
consensus_13326#5 ------------------------------------------------------------
consensus_13326#2 CTAGTATGTGTCTTGGTCTTCTCCATGTCTTCCAATTCCA-TCTGCTAGTGAATGCTATC 387
consensus_13326#4 CTAGTATGTGTCTTGGTCTTCTCCATGTCTTCCCATTCCACTCTGCTAGTGAATGCTATC 95
consensus_13326#3 CTANTATGTGTCTTGGTCTTCTCCATGTCTTCCAATTCCA-TCTGCTANTGAATGCTATC 365
consensus_13326#1 CTACTNTGTGTCTTGGTCTTCTCCATGTCTTCCNNTTCCA-TCTGCTAGTGAATGCTATC 417
consensus_13326#0 CTGTCACGCCCATCTCCTGCTCCCCCCTCTCCCCACCCTTCCCCTCTGCCCCCCCCCGCC 413
consensus_13326#5 ------------------------------------------------------------
consensus_13326#2 TTTAGCCATTGTGACAAACCAAACAATAAACCA-TCTGTCTTTCCTATCGT--------- 437
consensus_13326#4 TTTACCCCTTGTGACCAACCCAACCATAAACCACTCTGTCTTTTTTCCCCTTCATTTTTC 155
consensus_13326#3 TTTAGCCATTGTGACNAAC-AAACAATAAACCA-TCTGTCTTTCCTATCGT--------- 414
consensus_13326#1 TTTAGCCATTGTGACAAACCAAACNNTNAACCA-TCTGTCTTTCCTATCGT--------- 467
consensus_13326#0 CA-ACCCCCCCCCTTCCCCCAAACACTCAACCATTATAGCTTCTTTCTACCGAACGTCCG 472
consensus_13326#5 ------------------------------------------------------------
consensus_13326#2 ------GATTTCTGCC--TCCGGCTGTGAATATCCG--TGTG-CCTTTTGTACTGG-ATT 485
consensus_13326#4 CCGGCTAGATTCTGCCCTCCCGGCTGTGAATATCCG--TGTC-CCTTTTGTACTGG-ATT 211
consensus_13326#3 ------GANTTCTGCT---CCCGCTGTGAATATCCN--CCTTGCCTTTTGTACTGGGATT 463
consensus_13326#1 -------GATTCTGGNC-TCCGGCTGTGAATATCCG--TGTG-CCTTTTGTTCTGG-ATT 515
consensus_13326#0 ACT-CATTTTGCTCCTTCACCCGCCCCGGACCCGAGACCGGCACCCCCCGTACTTCTCTC 531
consensus_13326#5 ------------------------------------------------------------
consensus_13326#2 GCGT-TATATCTAATCAATCAAATCATCGTATCTATTATTAAAAAAAAAAAAAAAAA--- 541
consensus_13326#4 GCGT-TATATCTAATCCATCCAAT------------------------------------ 234
consensus_13326#3 GCGT-TATTTCTAATCCATCAAATCATCNTATC--------------------------- 495
consensus_13326#1 GCGT-TTTATCTAATCNATCCNATCNTCGT------------------------------ 544
consensus_13326#0 ACACATGCCGCCCACTAGTTGCCTCCCCGCACTACCACCCACCCCACCACTCTCCTCTGT 591
consensus_13326#5 ------------------------------------------------------------
consensus_13326#2 -----------------------------------
consensus_13326#4 -----------------------------------
consensus_13326#3 -----------------------------------
consensus_13326#1 -----------------------------------
consensus_13326#0 TGTGCGCCGTCTACTCCGCGCTACAATCCGTGCCA 626
consensus_13326#5 -----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||