cluster # 13328

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Oryza sativa
cluster # 13328 cluster # 13328 Sequences # 12 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13328#0 length = 788 sequences # 3
consensus_13328#1 length = 727 sequences # 1

consensus_13328#2 length = 691 sequences # 5
consensus_13328#3 length = 625 sequences # 3

consensusID : consensus_13328#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 788
fasta sequence

                              [NAGTCCAAGGAGAGGGTATTCGAGGGGTTCAGTCGACCGGCGGCGAGCATGGCGGCGGCGGCGGCGGCGGCGGGTCTGGAGGAGGCCCTCAGGCCCTTCCACGATAGGGCCTCCGATGCCGAGACACGTTTAGCAAAGCTGGAAGCCTTGCTGCTGAACAAAGATGGCCTGACGAGTGGTTCAGAGACAAATTCATCAGCCGTGAAAGATCTTCAGTCAAAGCTTGATGCAGTTAACACAGAATGTCTTGCTGAAAAGGAAAAGAACAAGAAGCTAATCATAGAGAACGAGAAGCTCCAGT-ACCGTA-TCACCCATCTCATCCGCGCATTGAAAGAGGCAGATTCAAGATAGAGAGCCCTACCAAGCTGGACCTAAAGCTAAATTTGTTTAAATTGAAGCACTGTGTATGATCTTGTGGTTTTGTGGACTGCGTGTTCTTAGCACCATCCATGAATTTAGCCAAAACTATTCTAGCGATCTTGATGGGTATGGTTAAAGCAAGGTGGGTGTGTGATTGCTCCGACAACTTTCATGCCAGAAGACAAAAAAGGTCATCACTTTACTTGTAACTCACATTGCCTCTCACATTCATGCACCATTGCATCCTTTTTTTCACCAAGGAAAAATATCCTCCTACCACTTGTTCAGACTAAAAGCATCCTCCAATCATGCCATCCATTTGCATTAGTGGTTGATACTGCTAATTTTACTGTTCTCAATGCTCCTCAATTTCCCAAACTACTCATGTAACCATAACCATCCACTCGATCCCTGNGAAACCAGCATTA]

[+] EMBL OS0187A              [NAGTCCAAGGAGAGGGTATTCGAGGGGTTCAGTCGACCGGCGGCGAGCATNGCGGCGGCGGCGGCGGCGGCGGGTCTNGAGGAGGCCCTCANGCCCTTCCACGATAGGGCCTNCGATGCCGAGACACGTTTAGCAAAGCTGGAAGCCTTNCTGCTGAACAAAGATGGCCTGACGAGTGGTTCAGAGACAAATTCATCAGCCGTGAAAGATCTTCAGTCAAAGCTTGATGCAGTTAACACAGAATGTCTTGCTGAAAAGGAAAAGAACAAGAAGCTAATCATAGAGAACGAGAAGNTCCAGTAACCGTATTCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU174935             [       AGGAGAGGGTATTCGAGGGGTTCAGTCGACCGGCGGCGAGCATGGCGGCGGCGGCGGCGGCGGCGGGTCTGGAGGAGGCCCTCAGGCCCTTCCACGATAGGGCCTCCGATGCCGAGACACGTTTAGCAAAGCTGGAAGCCTTGCTGCTGAACAAAGATGGCCTGACGAGTGGTTCAGAGACAAATTCATCAGCCGTGAAAGATCTTCAGTCAAAGCTTGATGCAGTTAACACAGAATGTCTTGCTGAAAAGGAAAAGAACAAGAAGCTAATCATAGAGAACGAGAAGCTCCAGT ACCGTA TCACCCATCTCATCCGCGCATTGAAAGAGGCAGATTCAAGATAGAGAGCCCTACCAAGCTGGACCTAAAGCTAAATTTGTTTAAATTGAA                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CB678915             [                            TCAGTCTACCGGCGGCGAGCATGGCGGCGGCGGCGGCGGCGGCGGGTCTGGAGGAGGCCCTCAGGCCCTTCCACGATAGGGCCTCCGATGCCGAGACACGTTTAGCAAAGCTGGAAGCCTTGCTGCTGAACAAAGATGGCCTGACGAGTGGTTCAGAGACAAATTCATCAGCCGTGAAAGATCTTCAGTCAAAGCTTGATGCAGTTAACACAGAATGTCTTGCTGAAAAGGAAAAGAACAAGAAGCTAATCATAGAGAACGAGAAGCTCCAGT ACCGTA TCACCCATCTCATCCGCGCATTGAAAGAGGCAGATTCAAGATAGAGAGCCCTACCAAGCTGGACCTAAAGCTAAATTTGTTTAAATTGAAGCACTGTGTATGATCTTGTGGTTTTGTGGACTGCGTGTTCTTAGCACCATCCATGAATTTAGCCAAAACTATTCTAGCGATCTTGATGGGTATGGTTAAAGCAAGGTGGGTGTGTGATTGCTCCGACAACTTTCATGCCAGAAGACAAAAAAGGTCATCACTTTACTTGTAACTCACATTGCCTCTCACATTCATGCACCATTGCATCCTTTTTTTCACCAAGGAAAAATATCCTCCTACCACTTGTTCAGACTAAAAGCATCCTCCAATCATGCCATCCATTTGCATTAGTGGTTGATACTGCTAATTTTACTGTTCTCAATGCTCCTCAATTTCCCAAACTACTCATGTAACCATAACCATCCACTCGATCCCTGNGAAACCAGCATTA]




>consensus_13328#0
NAGTCCAAGGAGAGGGTATTCGAGGGGTTCAGTCGACCGGCGGCGAGCATGGCGGCGGCG
GCGGCGGCGGCGGGTCTGGAGGAGGCCCTCAGGCCCTTCCACGATAGGGCCTCCGATGCC
GAGACACGTTTAGCAAAGCTGGAAGCCTTGCTGCTGAACAAAGATGGCCTGACGAGTGGT
TCAGAGACAAATTCATCAGCCGTGAAAGATCTTCAGTCAAAGCTTGATGCAGTTAACACA
GAATGTCTTGCTGAAAAGGAAAAGAACAAGAAGCTAATCATAGAGAACGAGAAGCTCCAG
TACCGTATCACCCATCTCATCCGCGCATTGAAAGAGGCAGATTCAAGATAGAGAGCCCTA
CCAAGCTGGACCTAAAGCTAAATTTGTTTAAATTGAAGCACTGTGTATGATCTTGTGGTT
TTGTGGACTGCGTGTTCTTAGCACCATCCATGAATTTAGCCAAAACTATTCTAGCGATCT
TGATGGGTATGGTTAAAGCAAGGTGGGTGTGTGATTGCTCCGACAACTTTCATGCCAGAA
GACAAAAAAGGTCATCACTTTACTTGTAACTCACATTGCCTCTCACATTCATGCACCATT
GCATCCTTTTTTTCACCAAGGAAAAATATCCTCCTACCACTTGTTCAGACTAAAAGCATC
CTCCAATCATGCCATCCATTTGCATTAGTGGTTGATACTGCTAATTTTACTGTTCTCAAT
GCTCCTCAATTTCCCAAACTACTCATGTAACCATAACCATCCACTCGATCCCTGNGAAAC
CAGCATTA

consensusID : consensus_13328#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 727
fasta sequence

                              [CGAGGGGTTCAGTCGACCGGCGGCGAGCATGGCGGCGGCGGCGGCGGCGGCGGGTCTGGAGGAGGCCCTCAGGCCCTTCCACGATAGGGCCTCCGATGCCGAGACACGTTTAGCAAAGCTGGAAGCCTTGCTGCTGAACAAAGATGGCCTGACGAGTGGTTCAGAGACAAATTCATCAGCCGTGAAAGATCTTCAGTCAAAGCTTGATGCAGTTAACACAGAATGTCTTGCTGAAAAGGAAAAGAACAAGAAGCTAATCATAGAGAACGAGAAGCTCCAGTACCGTATCACCCATCTCATCCGCGCATTGAAAGAGGCAGATTCAAGATAGAGAGCCCTACCAAGCTGGACCTAAAGCTAAATTTGTTTAAATTGAAGCACTGTGTATGATCTTGTGGTTTTGTGGACTGCGTGTTCTTAGCACCATCCATGAATTTAGCCAAAACTATTCTAGCGATCTTGATGGGTATGGTTAAAGCAAGGTGGGTGTGTGATTGCTCCGACAACTTTCATGCCAGAAGACAAAAAAGGTTAATCACACAAAATGGCACCAAATTCGACAGCGAAAGGAGCTGGGTAAGGGGAGCCTCACTCGTTTCCTTGTTAGTTTATCATCCACGGTTTAAAAACCTTTTTTTTTAAGAAACACTGCAAACACAGACACTCAAAAATGCTCACACATTCACCTTTATGAACACATATATACATCCTAAACCTGTAAAACTGT]

[+] EMBL AK062339             [CGAGGGGTTCAGTCGACCGGCGGCGAGCATGGCGGCGGCGGCGGCGGCGGCGGGTCTGGAGGAGGCCCTCAGGCCCTTCCACGATAGGGCCTCCGATGCCGAGACACGTTTAGCAAAGCTGGAAGCCTTGCTGCTGAACAAAGATGGCCTGACGAGTGGTTCAGAGACAAATTCATCAGCCGTGAAAGATCTTCAGTCAAAGCTTGATGCAGTTAACACAGAATGTCTTGCTGAAAAGGAAAAGAACAAGAAGCTAATCATAGAGAACGAGAAGCTCCAGTACCGTATCACCCATCTCATCCGCGCATTGAAAGAGGCAGATTCAAGATAGAGAGCCCTACCAAGCTGGACCTAAAGCTAAATTTGTTTAAATTGAAGCACTGTGTATGATCTTGTGGTTTTGTGGACTGCGTGTTCTTAGCACCATCCATGAATTTAGCCAAAACTATTCTAGCGATCTTGATGGGTATGGTTAAAGCAAGGTGGGTGTGTGATTGCTCCGACAACTTTCATGCCAGAAGACAAAAAAGGTTAATCACACAAAATGGCACCAAATTCGACAGCGAAAGGAGCTGGGTAAGGGGAGCCTCACTCGTTTCCTTGTTAGTTTATCATCCACGGTTTAAAAACCTTTTTTTTTAAGAAACACTGCAAACACAGACACTCAAAAATGCTCACACATTCACCTTTATGAACACATATATACATCCTAAACCTGTAAAACTGT]




>consensus_13328#1
CGAGGGGTTCAGTCGACCGGCGGCGAGCATGGCGGCGGCGGCGGCGGCGGCGGGTCTGGA
GGAGGCCCTCAGGCCCTTCCACGATAGGGCCTCCGATGCCGAGACACGTTTAGCAAAGCT
GGAAGCCTTGCTGCTGAACAAAGATGGCCTGACGAGTGGTTCAGAGACAAATTCATCAGC
CGTGAAAGATCTTCAGTCAAAGCTTGATGCAGTTAACACAGAATGTCTTGCTGAAAAGGA
AAAGAACAAGAAGCTAATCATAGAGAACGAGAAGCTCCAGTACCGTATCACCCATCTCAT
CCGCGCATTGAAAGAGGCAGATTCAAGATAGAGAGCCCTACCAAGCTGGACCTAAAGCTA
AATTTGTTTAAATTGAAGCACTGTGTATGATCTTGTGGTTTTGTGGACTGCGTGTTCTTA
GCACCATCCATGAATTTAGCCAAAACTATTCTAGCGATCTTGATGGGTATGGTTAAAGCA
AGGTGGGTGTGTGATTGCTCCGACAACTTTCATGCCAGAAGACAAAAAAGGTTAATCACA
CAAAATGGCACCAAATTCGACAGCGAAAGGAGCTGGGTAAGGGGAGCCTCACTCGTTTCC
TTGTTAGTTTATCATCCACGGTTTAAAAACCTTTTTTTTTAAGAAACACTGCAAACACAG
ACACTCAAAAATGCTCACACATTCACCTTTATGAACACATATATACATCCTAAACCTGTA
AAACTGT

consensusID : consensus_13328#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 691
fasta sequence

                              [CGGCGAGCATGGCGGCGGCGGCGGCGGCGGCGGGTCTGGAGGAGGCCCTCAGGCCCTTCCACGATAGGGCCTCCGATGCCGAGACACGTTTAGCAAAGCTGGAAGCCTTGCTGCTGAACAAAGATGGCCTGACGAGTGGTTCAGAGACAAATTCATCAGCCGTGAAAGATCTTCAGTCAAAGCTTGATGCAGTTAACACAGAATGTCTTGCTGAAAAGGAAAAGAACAAGAAGCTAATCATAGAGAACGAGAAGCTCCAGTACCGTATCACCCATCTCATCCGCGCATTGAAAGAGGCAGATTCAAGATAGAGAGCCCTACCAAGCTGGACCTAAAGCTAAATTTGTTTAAATTGAAGCACTGTGTATGATCTTGTGGTTTTGTGGACTGCGTGTTCTTAGCACCATCCATGAATTTAGCCAAAACTATTCTAGCGATCTTGATGGGTATGGTTAAAGCAAGGTATTGATTTCGAATTTTTGAAACATAATTAAACTGCTTGTATTTGACTATTACACAAAATTGGGTGCGACTCCCTGTTATCTCCCATTTCGCAATATGATTTCAGTGCTGAAAAGTGAAAAAAAATTGCTGCAATTCAACTCAATGTACAGTTGATATGACATGAAATCTTTTGGAGAACTCAAGAGTAATGTGATTAAGCAAAGATATTTTGATCAAAAAAAAAAAA]

[+] EMBL AU077770             [CGGCGAGCATGGCGGCGGCGGCGGCGGCGGCGGGTCTGGAGGAGGCCCTCAGGCCCTTCCACGATAGGGCCTCCGATGCCGAGACACGTTTAGCAAAGCTGGAAGCCTTGCTGCTGAACAAAGATGGCCTGACGAGTGGTTCAGAGACAAATTCATCAGCCGTGAAAGATCTTCAGTCAAAGCTTGATGCAGTTAACACAGAATGTCTTGCTGAAAAGGAAAAGAACAAGAAGCTAATCATAGAGAACGAGAAGCTCCAGTACCGTATCACCCATCTCATCCGCGCATTGAAAGAGGCAGATTCAAGATAGAGAGCCCTACCAAGCTGGACCTAAAGCTAAATTTGTTTAAATTGAAGCACTGTGTATGATCTTGTGGTTTTGTGGACTGCGTGTTCTTAGCACCATCCATGAATTTAGCCAAAACTATTCTAGCGATCTTGATGGGTATGGTTAAAGCAAGGTATTGATTTCGAATTTTTGAAA                                                                                                                                                                                                              ]
[-] EMBL CA762283             [                 atGGCGGCGCCGGCGGGTCTGGAGGAGGCCCTCAGGCCCTTCCACGATAGGGCCTCCGATGCCGAGACACGTTTAGCAAAGCTGGAAGCCTTGCTGCTGAACAAAGATGGCCTGACGAGTGGTTCAGAGACAAATTCATCAGCCGTGAAAGATCTTCAGTCAAAGCTTGATGCAGTTAACACAGAATGTCTTGCTGAAAAGGAAAAGAACAAGAAGCTAATCATAGAGAACGAGAAGCTCCAGTACCGTATCACCCGTCTCATCCGCGCATTGAAAGAGGCAGATTCAAGATAGAGAGCCCTACCAAGCTGGACCTAAAGCTAAATTTGTTTAAATTGAAGCACTGTGTATGATCTTGTGGTTTTGTGGACTGCATGTTTTTAGCACCATCCATGAATTTAGCCAAAACTATTCTAGCGATCTTGATGGGTATGGTTAAAGCAAGGTATTGATTTCGAATTTTTGAAACATAATTAAACTGCTTGTATTTGACTATTACACAAAATTGGGTGCGACTCCCTGTTATCTCCCATTTCGCAATATGATTTCAGTGCTGAAAAGTGAAAAAAAATTGCTGCAATTCAACTCAATGTACAGTTGATATGACATGAAATCTTTTGGAGAACTCAAGAGTAATGTGATTAAGCAAAGATATTTTGATCAAAAAAAAAAAA]
[+] EMBL AU174934             [                           CGGCGGGTCTGGAGGAGGCCCTCAGGCCCTTCCACGATAGGGCCTCCGATGCCGAGACACGTTTAGCAAAGCTGGAAGCCTTGCTGCTGAACAAAGATGGCCTGACGAGTGGTTCAGAGACAAATTCATCAGCCGTGAAAGATCTTCAGTCAAAGCTTGATGCAGTTAACACAGAATGTCTTGCTGAAAAGGAAAAGAACAAGAAGCTAATCATAGAGAACGAGAAGCTCCAGTACCGTATCACCCATNTCATCCGCGCATTGAAAGAGGCAGATTCAAGATAGAGAGCCCTACCAAGCTGGACCTAAAGCTAAATTTGTTTAAATTGAAGCNCTGTGTATGATCTTGTGGTTTTGTGGACTGCGTGTTNTTAGCNCCATCCATGAATTTAGCCAAAACTATTCTAGCGATCTTGATGGGTATGGTTAAAGCAAGGTATTGATTTCGAAaaaaaa                                                                                                                                                                                                                 ]
[+] EMBL C97953               [                                                                                        TTTAGCAAAGCTGGAAGCCTTGCTGCTGAACAAAGATGGCCTGACGAGTGGTTCAGAGACAAATTCATCAGCCGTGAAAGATCTTCAGTCAAAGCTTGATGCAGTTAACACAGAATGTCTTGCTGAAAAGGAAAAGAACAAGAAGCTAATCATAGAGAACGAGAAGCTCCAGTACCGTATCACCCATCTCATCCGCGCATTGAAAGAGGCAGATTCAAGATAGAGAGCCCTACCAAGCTGGACCTAAAGCTAAATTTGTTTAAATTGAAGCACTGTGTATGATCTTGTGGTTTTGTGGA TGCGTGTTCTTAGCACCATCCATGAATTTAGCCAAAACTATTCTAGCGATCTTGATGGGTATGGTTAAAGCAAGGTATTGATTTCGAATTTTTGAAACATAATTAAACTGCTTGTATTTGACTATTACACAAAA                                                                                                                                                                         ]
[-] EMBL CF291269             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CTATTACACAAAATTGGGTGCGACTCCCTGTCATCTCCCATTTCGCAAGATGATTTCAGTGCTGAAAAGTGAAAAAAAATTGCTGCAATTCAACTCAATGTACAGTTGATATGACATGAAATCTTTTGGAGAACTCAAGAGTAATGTGATTAAGCAAAG                       ]




>consensus_13328#2
CGGCGAGCATGGCGGCGGCGGCGGCGGCGGCGGGTCTGGAGGAGGCCCTCAGGCCCTTCC
ACGATAGGGCCTCCGATGCCGAGACACGTTTAGCAAAGCTGGAAGCCTTGCTGCTGAACA
AAGATGGCCTGACGAGTGGTTCAGAGACAAATTCATCAGCCGTGAAAGATCTTCAGTCAA
AGCTTGATGCAGTTAACACAGAATGTCTTGCTGAAAAGGAAAAGAACAAGAAGCTAATCA
TAGAGAACGAGAAGCTCCAGTACCGTATCACCCATCTCATCCGCGCATTGAAAGAGGCAG
ATTCAAGATAGAGAGCCCTACCAAGCTGGACCTAAAGCTAAATTTGTTTAAATTGAAGCA
CTGTGTATGATCTTGTGGTTTTGTGGACTGCGTGTTCTTAGCACCATCCATGAATTTAGC
CAAAACTATTCTAGCGATCTTGATGGGTATGGTTAAAGCAAGGTATTGATTTCGAATTTT
TGAAACATAATTAAACTGCTTGTATTTGACTATTACACAAAATTGGGTGCGACTCCCTGT
TATCTCCCATTTCGCAATATGATTTCAGTGCTGAAAAGTGAAAAAAAATTGCTGCAATTC
AACTCAATGTACAGTTGATATGACATGAAATCTTTTGGAGAACTCAAGAGTAATGTGATT
AAGCAAAGATATTTTGATCAAAAAAAAAAAA

consensusID : consensus_13328#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 625
fasta sequence

                              [GAGAGGGTATTCGAGGGGTTCAGTCGACCGGCGGCGAGCATGGCGGCGGCGGCGGGTCTGGAGGAGGCCCTCAGGCCCTTCCACGATAGGGCCTCCGATGCCGAGACACGTTTAGCAAAGCTGGAAGCCTTGCTGCTGAACAAAGATGGCCTGACGAGTGGTTCAGAGACAAATTCATCAGCCGTGAAAGATCTTCAGTCAAAGCTTGATGCAGTTAACACAGAATGTCTTGCTGAAAAGGAAAAGAACAAGAAGCTAATCATAGAGAACGAGAAGCTCCAGTACCGTATCACCCATCTCATCCGCGCATTGAAAGAGGCAGATTCAAGATAGAGAGCCCTACCAAGCTGGACCTAAAGCTAAATTTGTTTAAATTGAAGCACTGTGTATGATCTTGTGGTTTTGTGGACTGCATGTTCTTAGCACCATCCATGAATTTAGCCAAAACTATTCTAGCGATCTTGATGGGTATGGTTAAAGCAAGGTATTGATTTCGAATTTTTGAAACATAATTAAACTGCTTGTATTTGACTATTACACAAAATTGGGTGCGACTCCCTGTCATCTCCCATTTCGCAAGATGATTTCAGTGCTGAAAAGTGAAAAAAAATTGCTGCAAAAAAAA]

[+] EMBL CA755313             [GAGAGGGTATTCGAGGGGTTCAGTCGACCGGCGGCGAGCATGGCGGCGGCGGCGGGTCTGGAGGAGGCCCTCAGGCCCTTCCACGATAGGGCCTCCGATGCCGAGACACGTTTAGCAAAGCTGGAAGCCTTGCTGCTGAACAAAGATGGCCTGACGAGTGGTTCAGAGACAAATTCATCAGCCGTGAAAGATCTTCAGTCAAAGCTTGATGCAGTTAACACAGAATGTCTTGCTGAAAAGGAAAAGAACAAGAAGCTAATCATAGAGAACGAGAAGCTCCAGTACCGTATCACCCATCTCATCCGCGCATTGAAAGAGGCAGATTCAAGATAGAGAGCCCTACCAAGCTGGACCTAAAGCTAAATTTGTTTAAATTGAAGCACTGTGTATGATCTTGTGGTTTTGTGGACTGCGTGTTCTTAGCACCATCCATGAATTTAGCCAAAACTATTCTAGCGATCTTGATGGGTATGGTTAAAGCAAGGTATTGATTTCGAATTTTTGAAACATAATTAAACTGCTTGTATTTGACTATTACACAAAATTGGGTGCGACTCCCTGTCATCTCCCATTTCGCAAGATGATTTCAGTGCTGAAAAGTGAAAAAAAATTGCTGCAAAAAAAA]
[+] EMBL CB626637             [            GAGGGGTTCAGTCGACCGGCGGCGAGCATGGCGGCGGCGGCGGGTCTGGAGGAGGCCCTCAGGCCCTTCCACGATAGGGCCTCCGATGCCGAGACACGTTTAGCAAAGCTGGAAGCCTTGCTGCTGAACAAAGATGGCCTGACGAGTGGTTCAGAGACAAATTCATCAGCCGTGAAAGATCTTCAGTCAAAGCTTGATGCAGTTAACACAGAATGTCTTGCTGAAAAGGAAAAGAACAAGAAGCTAATCATAGAGAACGAGAAGCTCCAGTACCGTATCACCCATCTCATCCGCGCATTGAAAGAGGCAGATTCAAGATAGAGAGCCCTACCAAGCTGGACCTAAAGCTAAATTTGTTTAAATTGAAGCACTGTGTATGATCTTGTGGTTTTGTGGACTGCATGTTCTTAGCACCATCCATGAATTTAGCCAAAACTATTCTAGCGATCTTGATGGGTATGGTTAAAGCAAGGTATTGATTTCGAATTTTTGAAACATAATTAAACTGCTTGTA                                                                                                   ]
[+] EMBL CF196030             [                                                                               TCCACGATAGGGCCTCCGATGCCGAGACACGTTTAGCAAAGCTGGAAGCCTTGCTGCTGAACAAAGATGGCCTGACGAGTGGTTCAGAGACAAATTCATCAGCCGTGAAAGATCTTCAGTCAAAGCTTGATGCAGTTAACACAGAATGTCTTGCTGAAAAGGAAAAGAACAAGAAGCTAATCATAGAGAACGAGAAGCTCCAGTACCGTATCACCCATCTCATCCGCGCATTGAAAGNNNCAGATTCAAGATAGAGAGCCCTACCAAGCTGGACCTAAAGCTAAATTTGTTTAAATTGAAGCACTGTGTATGATCTTGTGGTTTTGTGGACTGCATGTTCTTNNNNNCATCCATGAATTTA NNNNAACTATTCTNNNGATCTTGATNGGTATGGTTAAAGnnn                                                                                                                                              ]




>consensus_13328#3
GAGAGGGTATTCGAGGGGTTCAGTCGACCGGCGGCGAGCATGGCGGCGGCGGCGGGTCTG
GAGGAGGCCCTCAGGCCCTTCCACGATAGGGCCTCCGATGCCGAGACACGTTTAGCAAAG
CTGGAAGCCTTGCTGCTGAACAAAGATGGCCTGACGAGTGGTTCAGAGACAAATTCATCA
GCCGTGAAAGATCTTCAGTCAAAGCTTGATGCAGTTAACACAGAATGTCTTGCTGAAAAG
GAAAAGAACAAGAAGCTAATCATAGAGAACGAGAAGCTCCAGTACCGTATCACCCATCTC
ATCCGCGCATTGAAAGAGGCAGATTCAAGATAGAGAGCCCTACCAAGCTGGACCTAAAGC
TAAATTTGTTTAAATTGAAGCACTGTGTATGATCTTGTGGTTTTGTGGACTGCATGTTCT
TAGCACCATCCATGAATTTAGCCAAAACTATTCTAGCGATCTTGATGGGTATGGTTAAAG
CAAGGTATTGATTTCGAATTTTTGAAACATAATTAAACTGCTTGTATTTGACTATTACAC
AAAATTGGGTGCGACTCCCTGTCATCTCCCATTTCGCAAGATGATTTCAGTGCTGAAAAG
TGAAAAAAAATTGCTGCAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13328#2      ----------------------------------------CGGCGAGCA-TGGCGGCGGC 19
consensus_13328#3      -------------------GAGAGGGTATTCGAGGGGTTCAGTCGACCGGCGGCGAGCAT 41
consensus_13328#0      NAGTCCAAGGAGAGGGTATTCGAGGGGTTCAGTCGACCGGCGGCGAGCA-TGGCGGCGGC 59
consensus_13328#1      --------------------CGAGGGGTTCAGTCGACCGGCGGCGAGCA-TGGCGGCGGC 39
                                                                * *** *   ****     

consensus_13328#2      GGCGGCGGCGGCGGGTCTGGAGGAGGCCCTCAGGCCCTTCCACGATAGGGCCTCCGATGC 79
consensus_13328#3      GGCGGCGGCGGCGGGTCTGGAGGAGGCCCTCAGGCCCTTCCACGATAGGGCCTCCGATGC 101
consensus_13328#0      GGCGGCGGCGGCGGGTCTGGAGGAGGCCCTCAGGCCCTTCCACGATAGGGCCTCCGATGC 119
consensus_13328#1      GGCGGCGGCGGCGGGTCTGGAGGAGGCCCTCAGGCCCTTCCACGATAGGGCCTCCGATGC 99
                       ************************************************************

consensus_13328#2      CGAGACACGTTTAGCAAAGCTGGAAGCCTTGCTGCTGAACAAAGATGGCCTGACGAGTGG 139
consensus_13328#3      CGAGACACGTTTAGCAAAGCTGGAAGCCTTGCTGCTGAACAAAGATGGCCTGACGAGTGG 161
consensus_13328#0      CGAGACACGTTTAGCAAAGCTGGAAGCCTTGCTGCTGAACAAAGATGGCCTGACGAGTGG 179
consensus_13328#1      CGAGACACGTTTAGCAAAGCTGGAAGCCTTGCTGCTGAACAAAGATGGCCTGACGAGTGG 159
                       ************************************************************

consensus_13328#2      TTCAGAGACAAATTCATCAGCCGTGAAAGATCTTCAGTCAAAGCTTGATGCAGTTAACAC 199
consensus_13328#3      TTCAGAGACAAATTCATCAGCCGTGAAAGATCTTCAGTCAAAGCTTGATGCAGTTAACAC 221
consensus_13328#0      TTCAGAGACAAATTCATCAGCCGTGAAAGATCTTCAGTCAAAGCTTGATGCAGTTAACAC 239
consensus_13328#1      TTCAGAGACAAATTCATCAGCCGTGAAAGATCTTCAGTCAAAGCTTGATGCAGTTAACAC 219
                       ************************************************************

consensus_13328#2      AGAATGTCTTGCTGAAAAGGAAAAGAACAAGAAGCTAATCATAGAGAACGAGAAGCTCCA 259
consensus_13328#3      AGAATGTCTTGCTGAAAAGGAAAAGAACAAGAAGCTAATCATAGAGAACGAGAAGCTCCA 281
consensus_13328#0      AGAATGTCTTGCTGAAAAGGAAAAGAACAAGAAGCTAATCATAGAGAACGAGAAGCTCCA 299
consensus_13328#1      AGAATGTCTTGCTGAAAAGGAAAAGAACAAGAAGCTAATCATAGAGAACGAGAAGCTCCA 279
                       ************************************************************

consensus_13328#2      GTACCGTATCACCCATCTCATCCGCGCATTGAAAGAGGCAGATTCAAGATAGAGAGCCCT 319
consensus_13328#3      GTACCGTATCACCCATCTCATCCGCGCATTGAAAGAGGCAGATTCAAGATAGAGAGCCCT 341
consensus_13328#0      GTACCGTATCACCCATCTCATCCGCGCATTGAAAGAGGCAGATTCAAGATAGAGAGCCCT 359
consensus_13328#1      GTACCGTATCACCCATCTCATCCGCGCATTGAAAGAGGCAGATTCAAGATAGAGAGCCCT 339
                       ************************************************************

consensus_13328#2      ACCAAGCTGGACCTAAAGCTAAATTTGTTTAAATTGAAGCACTGTGTATGATCTTGTGGT 379
consensus_13328#3      ACCAAGCTGGACCTAAAGCTAAATTTGTTTAAATTGAAGCACTGTGTATGATCTTGTGGT 401
consensus_13328#0      ACCAAGCTGGACCTAAAGCTAAATTTGTTTAAATTGAAGCACTGTGTATGATCTTGTGGT 419
consensus_13328#1      ACCAAGCTGGACCTAAAGCTAAATTTGTTTAAATTGAAGCACTGTGTATGATCTTGTGGT 399
                       ************************************************************

consensus_13328#2      TTTGTGGACTGCGTGTTCTTAGCACCATCCATGAATTTAGCCAAAACTATTCTAGCGATC 439
consensus_13328#3      TTTGTGGACTGCATGTTCTTAGCACCATCCATGAATTTAGCCAAAACTATTCTAGCGATC 461
consensus_13328#0      TTTGTGGACTGCGTGTTCTTAGCACCATCCATGAATTTAGCCAAAACTATTCTAGCGATC 479
consensus_13328#1      TTTGTGGACTGCGTGTTCTTAGCACCATCCATGAATTTAGCCAAAACTATTCTAGCGATC 459
                       ************ ***********************************************

consensus_13328#2      TTGATGGGTATGGTTAAAGCAAGGT---------ATTGATTTCGAATTTTTGAAAC---A 487
consensus_13328#3      TTGATGGGTATGGTTAAAGCAAGGT---------ATTGATTTCGAATTTTTGAAAC---A 509
consensus_13328#0      TTGATGGGTATGGTTAAAGCAAGGTGGGTGTGTGATTGCTCCGACAACTTTCATGCCAGA 539
consensus_13328#1      TTGATGGGTATGGTTAAAGCAAGGTGGGTGTGTGATTGCTCCGACAACTTTCATGCCAGA 519
                       *************************         **** *     *  *** *  *   *

consensus_13328#2      TAATTAAACTGCTTGT-------------ATTTG-ACTATTACACAAAATTGGGTGCGAC 533
consensus_13328#3      TAATTAAACTGCTTGT-------------ATTTG-ACTATTACACAAAATTGGGTGCGAC 555
consensus_13328#0      AGACAAAAAAGGTCATCACTTTACTTGTAACTCACATTGCCTCTCACATTCATGCACCAT 599
consensus_13328#1      AGACAAAAAAGGTTA-----------ATCACACAAAATGGCAC-CAAATTCGACAGCGAA 567
                         *  ***  * *                *     * *    * ** * *      * * 

consensus_13328#2      TCCCTGTTATCTCCCATTTCGCAATATGATTTCAGTGCTGAAAAGT--GAAAAAAAATTG 591
consensus_13328#3      TCCCTGTCATCTCCCATTTCGCAAGATGATTTCAGTGCTGAAAAGT--GAAAAAAAATTG 613
consensus_13328#0      TGCATCCTTTTTTTCACCAAGGAAAAATATCCTCCTACCACTTGTTCAGACTAAAAGCAT 659
consensus_13328#1      AGGAGC-------TGGGTAAGGGGAGCCTCACTCGTTTC-CTTGTT-AGTTTA---TCAT 615
                                           *              *         *  *   *       

consensus_13328#2      CTGCAATTCAAC---TCAATGTACAGTTGATAT-GACATGAAATCTTTTGGAGAACTCAA 647
consensus_13328#3      CTGCAAAAAAAA------------------------------------------------ 625
consensus_13328#0      CCTCCAATCATGCCATCCATTTGCATTAGTGGTTGATACTGCTAATTTTACTGTTCTCAA 719
consensus_13328#1      CCACGGTTTAAA--AACCTTTTTTTTTAAGAA---ACACTGCAAACACAG--ACACTCAA 668
                       *  *     *                                                  

consensus_13328#2      GAGTAATGTGATTAAGCAAAGATATTT-TGATCAAAAAAAAAAAA--------------- 691
consensus_13328#3      ------------------------------------------------------------
consensus_13328#0      TGCTCCTCAATTTCCCAAACTACTCATGTAACCATAACCATCCACTCGATCCCTGNGAAA 779
consensus_13328#1      AAATGCTCA-----CACATTCACCTTTATGAACACATATATACATCCTAAACCTGTAAAA 723
                                                                                   

consensus_13328#2      ---------
consensus_13328#3      ---------
consensus_13328#0      CCAGCATTA 788
consensus_13328#1      CTGT----- 727