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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13335#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 546 fasta sequence
[AAAATTTGGTAAAGAGAAACATCATGGTGGCAGGCAGGATTCAGTACGAAGCACCAAGAAATTCCAGAGACCTG-AATTAGAAGCTACACAAAGCATAAAGCAAGCCTCTCATATCTTTCCTCATACAGATGATGTTCTCAAAGAGGCTGTTAATCAAACACATCAGCAGTATGCACTAACGACTAACATGATGGACTGTCTCTCAAGTTTTTGAGCTGCTAAACCTAAACCACAGATGTCCTAAAGCTACAAGCATTTACCAACAATCTTCTCCCCAAGAGGATTATTTTCTTTCTAGCACCCTGCAGAGGACACAACTGACCCCAGATGAGCTGCTCAACTATC-GCTTTGAGGGTCTAC---CATCATCATCATCATCACCATCGTCATCATCATCGTCGTCATCTTCATCGTCGCCACCCGACCTCTTCCTCTTCGACGAGGAT-TGCGCCTTCGCGGAATCATCATCGCCATCATCGTCCTCATCAATCTCTTCATCCTCGGNAACCTCACNGTTTTCATCTGGCTCGAAGTCANCTGGAATGCTCT]
[+] EMBL CB618968 [AAAATTTGGTAAAGAGAAACATCATGGTGGCAGGCAGGATTCAGTACGAAGCACCAAGAAATTCCAGAGACCTG AATTAGAAGCTACACAAAGCATAAAGCAAGCCTCTCATATCTTTCCTCATACAGATGATGTTCTCAAAGAGGCTGTTAATCAAACACATCAGCAGTATGCACTAACGACTAACATGATGGACTGTCTCTCAAGTTTTTGAGCTGCTAAACCTAAACCACAGATGTCCTAAAGCTACAAGCATTTACCAACAATCTTCTCCCCAAGAGGATTATTTTCTTTCTAGCACCCTGCAGAGGACACAACTGACCCCAGATGAGCTGCTCAACTATC GCTTTGAGGGTCTACCATCATCATCATCATCATCACCATCGTCATCATCATCGTCGTCATCTTCATCGTCGCCACCCGACCTCTTCCTCTTCGACGAGGAT TGCGCCTTCGCGGAATCATCATCGCCATCATCGTCCTCA ]
[+] EMBL CB678957 [ AAGAGAAACATCATGGTGGCAGGCAGGATTCCGTACGAAGCACCAAGAAATTCCAGAGACCTG AATTAGAAGCTACACAAAGCATAAAGCAAGCCTCTCATATCTTTCCTCATACAGATGATGTTCTCAAAGAGGCTGTTAATCAAACACATCAGCAGTATGCACTAACGACTAACATGATGGACTGTCTCTCAAGTTTTTGAGCTGCTAAACCTAAACCACAGATGTCCTAAAGCTACAAGCATTTACCAACAATCTTCTCCCCAAGAGGATTATTTTCTTTCTAGCACCCTGCAGAGGACACAACTGACCCCAGATGAGCTGCTCAACTATC GCTTTGAGGGTCTAC CATCATCATCATCATCACCATCGTCATCATCATCGTCGTCATCTTCATCGTCGCCACCCGACCTCTTCCTCTTCGACGAGGAT TGCGCCTTCGCGGAATCATCATCGCCATCATCGTCCTCA ]
[-] EMBL C27015 [ GAAATTCCAGAGACCTGAAATTAGAAGCTACACAAAGCATAAAGCAAGCCTCTCATATCTTTCCTCATACAGATGATGGTCTCAAAGAGGCTGTTAATCAAACACATCAGCAGTATGCACTAACGACTAACATGATGGACTGTCTCTCAAGTTTTTGAGCTGCTAAACCTAAACCACAGATGTCCTAAAGCTACAAGCATTTACCAACAATCTTCTCCCCAAGAGGATTATTTTCTTTCTAGCACCCTGCAGAGGACACAACTGACCCCAGATGAGCTGCTCAACTATC GCTTTGAGGGTCTAC CATCATCATCATCATCACCATCGTCATCATCATCGTCGTCATCTTCATCGTCGCCACCCGACCTCTTCCTCTTCGACGAGGATNTG GCCTTCGCGGAATCATCATCGCCATCATCGTCCTCATCAATCTCTTCAT ]
[-] EMBL AU102063 [ ttttttTACACAAAGCATAAAGCAAGCCTCTCATATCTTTCCTCATACAGATGATGTTCTCAAAGAGGCTGTTAATCAAACACATCAGCAGTATGCACTAACGACTAACATGATGGACTGTCTCTCAAGTTTTTGAGCTGCTAAACCTAAACCACAGATGTCCTAAAGCTACAAGCATTTACCAACAATCTTCTCCCCAAGAGGATTATTTTCTTTCTAGCACCCTGCAGAGGACACAACTGACCCCAGATGAGCTGCTCAACTATC GCTTTGAGGGTCTAC CATCATCATCATCATCACCATCGTCATCATCATCGTCGTCATCTTCATCGTCGCCACCCGACCTCTTCCTCTTCGACGAGGAT TGCGCCTTCGCGGAATCATCATCGCCATCATCGTCCTCATCAATCTCTTCATCCTCGGNAACCTCACNGTTTTCATCTGGCTCGAAGTCANCTGGAATGCTCT]
[-] EMBL AU161968 [ agTACAC AAGCATAAAGCAAG CTCTCATATC TTCCTCATACAGATGATGTTCTCAAAGAGGCTGTTAATCAAACACATCAGCAGTATGCACTAACGACTAACATGATGGACTGTCTCTCAAGTTTTTGAGCTGCTAAACCTAAACCACAGATGTCCTAAAGCTACAAGCATTTACCAACAATCTTCTCCCCAAGAGGATTATTTTCTTTCTAGCACCCTGCAGAGGACACAACTGACCCCAGATGAGCTGCTCAACTATC GCTTTGAGGGTCTAC CATCATCATCATCATCACCATCGTCATCATCATCGTCGTCATCTTCATCGTCGCCACCCGACCTCTTCCTCTTCGACGAGGAT TGCGCCTTCGCGGAATCATCATCGCCATCATCGTCCTCAT ]
[-] EMBL CA998380 [ AGCCTCTCATATCTTTCCTCATACAGATGATGTTCTCAAAGAGGCTGTTAATCAAACACATCAGCAGTATGCACTAACGACTAACATGATGGACTGTCTCTCAAGTTTTTGAGCTGCTAAACCTAAACCACAGATGTCCTAAAGCTACAAGCATTTACCAACAATCTTCTCCCCAAGAGGATTATTTTCTTTCTAGCACCCTGCAGAGGACACAACTGACCCCAGATGAGCTGCTCAACTATC GCTTTGAGGGTCTAC CATCATCATCATCATCACCATCGTCATCATCATCGTCGTCATCTTCATCGTCGCCACCCGACCTCTTCCTCTTCGACGAGGAT TGCGCCTTCGCGGAATCATCATCGCCATCATCGTCCTCAT ]
[-] EMBL CA999761 [ CCTCATACAGATGATGTTCTCAAAGAGGCTGTTAATCAAACACATCAGCAGTATGCACTAACGACTAACATGATGGACTGTCTCTCAAGTTTTTGAGCTGCTAAACCTAAACCACAGATGTCCTAAAGCTACAAGCATTTACCAACAATCTTCTCCCCAAGAGGATTATTTTCTTTCTAGCACCCTGCAGAGGACACAACTGACCCCAGATGAGCTGCTCAACTATC GCTTTGAGGGTCTAC CATCATCATCATCATCACCATCGTCATCATCATCGTCGTCATCTTCATCGTCGCCACCCGACCTCTTCCTCTTCGACGAGGAT TGCGCCTTCGCGGAATCATCATCGCCATCATCGTCCTCAT ]
[-] EMBL AU198276 [ TGGACTGTCTCTCAAGTTTTTGAGCTGCTAAACCTAAACCACAGATGTCCTAAAGCTACAAGCATTTACCAACAATCTTCTCCCCAAGAGGATTATTTTCTTTCTAGCACCCTGCAGAGGACACAACTGACCCCAGATGAGCTGCTCAACTATC GCTTTGAGGGTCTAC CATCATCATCATCATCACCATCGTCATCATCATCGTCGTCATCTTCATCGTCGCCACCCGACCTCTTCCTCTTCGACGAGGAT TGCGCCTTCGCGGAATCATCATCGCCATCATCGTCCTCAT ]
[-] EMBL AU068872 [ GAGCTGCTAAACCTAAACCACAGATGTCCAAAAGCTACAAGCATTTACCAACAATCTTCTCCCCAAGAGGATTATTTTCTTTCTAGCACCCTGCAGAGGACACAACTGACCCCAGATGAGCTGCTCAACTATC GCTTTGAGGGTCTAC CATCATCATCATCATCACCATCGTCATCATCATCGTCGTCATCTTCATCGTCGCCACCCGACCTCTTCCTCTTCGACGAGGAT TGCGCCTTCGCGGAATCATCATCGCCATCATCGTCCTCAT ]
[-] EMBL AU065949 [ TACCAACAATCTTCTCCCCAAGAGGATTATTTTCTTTNTAGCACCCTGCAGAGGACACAACTGACCCCAGATGAGCTGCTCAANTATCGGCTTTGAGGG CTAC CATCATCATCATCATCACCATCGTCATCATCATCGTCGTCATCTTCATCGTCGCCACCCGACCTCTTCCTCTTCGACGAGGAT TGCGCCTTCGCGGAATCATCATCGCCATCATCGGCCTCAT ]
consensusID : consensus_13335#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 366 fasta sequence
[TTTTTTTTTTTTTTTTTTTTCTCAAAGAGGCTGTTAATCAAACACATCAGCAGTATGCACTAACGACTAACATGATGGACTGTCTCTCAAGTTTTTGAGCTGCTAAACCTAAACCACAGATGTCCTAAAGCTACAAGCATTTACCAACAATCTTCTCCCCAAGAGGATTATTTTCTTTCTAGCACCCTGCAGAGGACACAACTGACCCCAGATGAGCTGCTCAACTATCGCTTTGAGGGTCTACCATCATCATCATCATCACCATCGTCATCATCATCGTCGTCATCTTCATCGTCGCCACCCGACCTCTTCCTCTTCGACGAGGATTGCGCCTTCGCGGAATCATCATCGCCATCATCGTCCTCA]
[+] EMBL CF325047 [TTTTTTTTTTTTTTTTTTTTCTCAAAGAGGCTGTTAATCAAACACATCAGCAGTATGCACTAACGACTAACATGATGGACTGTCTCTCAAGTTTTTGAGCTGCTAAACCTAAACCACAGATGTCCTAAAGCTACAAGCATTTACCAACAATCTTCTCCCCAAGAGGATTATTTTCTTTCTAGCACCCTGCAGAGGACACAACTGACCCCAGATGAGCTGCTCAACTATCGCTTTGAGGGTCTACCATCATCATCATCATCACCATCGTCATCATCATCGTCGTCATCTTCATCGTCGCCACCCGACCTCTTCCTCTTCGACGAGGATTGCGCCTTCGCGGAATCATCATCGCCATCATCGTCCTCA]
consensusID : consensus_13335#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 174 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTCAGTACGAAGCACCAAGAAATTCCAGAGACCTGAATTAGAAGCTACACAAAGCATAAAGCAAGCCTCTCATANCTTNCCTCATACAGATGATGTNCTCAAAGAGGNTGTNAATCAAACCCANNANNANNNTNNNTTACGGACTTAANATGAT]
[-] EMBL AU197224 [TTTTTTTTTTTTTTTTTTTTTTCAGTACGAAGCACCAAGAAATTCCAGAGACCTGAATTAGAAGCTACACAAAGCATAAAGCAAGCCTCTCATANCTTNCCTCATACAGATGATGTNCTCAAAGAGGNTGTNAATCAAACCCANNANNANNNTNNNTTACGGACTTAANATGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13335#0 AAAATTTGGTAAAGAGAAACATCATGGTGGCAGGCAGGATTCAGTACGAAGCACCAAGAA 60
consensus_13335#1 ------------------------------------------------------------
consensus_13335#2 ------------------------------------------------------------
consensus_13335#0 ATTCCAGAGACCTGAATTAGAAGCTACACAAAGCATAAAGCAAGCCTCTCATATCTTTCC 120
consensus_13335#1 --------------------------------------------------------TTTT 4
consensus_13335#2 --------------------------------------------------------TTTT 4
**
consensus_13335#0 TCATACAGATGATGTTCTCAAAGAGGCTGTTAATCAAACACATCAGCAGTATGCACTAAC 180
consensus_13335#1 TTTTTTTTTTTTTTTTCTCAAAGAGGCTGTTAATCAAACACATCAGCAGTATGCACTAAC 64
consensus_13335#2 TTTTTTTTTTTTTTTTTTCAGTACGA--AGCACCAAGAAATTCCAGAGACCTGAATTAGA 62
* * * * ** *** * * * * * *** ** * **
consensus_13335#0 GACTAACATGATGGACTGTCTCTCAAGTTTTTGAGCTGCTAAACCTAAACCACAGATGTC 240
consensus_13335#1 GACTAACATGATGGACTGTCTCTCAAGTTTTTGAGCTGCTAAACCTAAACCACAGATGTC 124
consensus_13335#2 AGCTAC----ACAAAGCATAAAGCAAGCCTCTCA-TANCTTNCCTCATACAGATGATGTN 117
*** * * * **** * * * ** * * ** *****
consensus_13335#0 CTAAAGCTACAAGCATTTACCAACAATCTTCTCCCCAAGAGGATTATTTTCTTTCTAGCA 300
consensus_13335#1 CTAAAGCTACAAGCATTTACCAACAATCTTCTCCCCAAGAGGATTATTTTCTTTCTAGCA 184
consensus_13335#2 CTCAAA--GAGGNTGTNAATCA--AACCCANNANNANNNTNNNTTACGGACTTAANATGA 173
** ** * * ** ** * *** *** * *
consensus_13335#0 CCCTGCAGAGGACACAACTGACCCCAGATGAGCTGCTCAACTATCGCTTTGAGGGTCTAC 360
consensus_13335#1 CCCTGCAGAGGACACAACTGACCCCAGATGAGCTGCTCAACTATCGCTTTGAGGGTCTAC 244
consensus_13335#2 T----------------------------------------------------------- 174
consensus_13335#0 CATCATCATCATCATCACCATCGTCATCATCATCGTCGTCATCTTCATCGTCGCCACCCG 420
consensus_13335#1 CATCATCATCATCATCACCATCGTCATCATCATCGTCGTCATCTTCATCGTCGCCACCCG 304
consensus_13335#2 ------------------------------------------------------------
consensus_13335#0 ACCTCTTCCTCTTCGACGAGGATTGCGCCTTCGCGGAATCATCATCGCCATCATCGTCCT 480
consensus_13335#1 ACCTCTTCCTCTTCGACGAGGATTGCGCCTTCGCGGAATCATCATCGCCATCATCGTCCT 364
consensus_13335#2 ------------------------------------------------------------
consensus_13335#0 CATCAATCTCTTCATCCTCGGNAACCTCACNGTTTTCATCTGGCTCGAAGTCANCTGGAA 540
consensus_13335#1 CA---------------------------------------------------------- 366
consensus_13335#2 ------------------------------------------------------------
consensus_13335#0 TGCTCT 546
consensus_13335#1 ------
consensus_13335#2 ------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||