These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13337#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1082 fasta sequence [AGAGAATCTTAAAATCTCTCCTCTCTCTCCAAGTCCCTGCCTCTCACTAGATATCATTCATACATAAATGCCAACCTGTTTGCTTTCTCAGCTAGAAAAACAGAGTTCTTGGTTACAAAGATCTTGACTTGCTTGGGAGAGGAAGAGAGAGGAGTTTCTTGCTTTCTTCAGAGGGAAATTGGCTTCTTGGAATCCTAATTAGAGCAAATACATGATATCCTAGGAGATAAACACACACACAAAAATCTAATTGAGGAAACTGATTGCCACTAGCTTCACCAAGAAATGGAGAGGGAGCAGATGAGGATGGCCATCCTGAGGCAAGAACAAACATTCAGACAACAGGTTCATGAGCTGCACAGACTGTACCATGTTCAGAAACAGCTGATGAAACAGATGCAGATCGCCAAGCTGAACCAAGCTCAGGCAATCGCT-GCCAACGCCGAAACCAAACCGAAATTCGAGATCACTTTCGCCGAGAATTCAACCAACCATCACCACCACCACCAATTCTACAGCTTCCAGAGCAGCAAGATCATGTCTCCCCCTGCAGCAGCAGCAGCAGCAGC-AGATCAAGAAGAGGAAGAAGAATGCGACCT-CCAGCTGACGCTGGCGACGGGGAGCAGCGGCGGCGGCGATGGCACGGCGAGGGGGCACAAGGGGAAGAAGGAGGTGAGGTCATCCAACTCGGACTCCGGCACGG-CGG-CGTCGTCGACGT-CGACGGAGT-CCG-AGCT-G-GCCCAGTT-CAAGAATCATCATCACCATCAGTTGG-ACTG-CGCGGCGGCGGCGCCGGTGGCGTCGCCGGCGGCGAGGTTCCAGGGCGAGAGCAAGAAGAGGGTGGTCGTCGTCGTGGACAACGAGATGAGCCTCCTCCAGCCTCCATGGCTCAACCAGTGCTTGAGCTTGAGGATGGCGTGATTAGCTTATAAAATAAAAATTGTAGATTTGTTGCATCGATGAAGAAGAAGAAGAAGAAGAAGAGATCGATCGATCGAGGAGGGATGGATGGATGCTGTTACTTACGTTGTAAATCACAGAGCTAATCTTCTTTTTTTCCTGCAAGAATTGGTAAAGAGATGAACAAA] [+] EMBL CF280715 [AGAGAATCTTAAAATCTCTCCTCTCTCTCCAAGTCCCTGCCTCTCACTAGATATCATTCATACATAAATGCCAACCTGTTTGCTTTCTCAGCTAGAAAAACAGAGTTCTTGGTTACAAAGATCTTGACTTGCTTGGGAGAGGAAGAGAGAGGAGTTTCTTGCTTTCTTCAGAGGGAAATTGGCTTCTTGGAATCCTAATTAGAGCAAATACATGATATCCTAGGAGATAAACACACACACAAAAATCTAATTGAGGAAACTGATTGCCACTAGCTTCACCAAGAAATGGAGAGGGAGCAGATGAGGATGGCCATCCTGAGGCAAGAACAAACATTCAGACAACAGGTTCATGAGCTGCACAGACTGTACCATGTTCAGAAACAGCTGATGAAACAGATGCAGATCGCCAAGCTGAACCAAGCTCAGGCAATCGCT GCCAACGCCGAAACCAAACCGAAATTCGAGATCACTTTCGCCGAGAATTCAACCAACCATCACTACCACCACCAATTCTACAGCTTCCAGAGCAGCAAGATCATGTCTCCCCCTGCAGCAGCAGCAGCAGCAGC AGATCAAGAAGAGGAAGAAGAATGCGACCT CCAGCTGACGCTG ] [+] EMBL CF281751 [ TCATTCATACATAAATGCCAACCTGTTTGCTTTCTCAGCTAGAAAAACAGAGTTCTTGGTTACAAAGATCTTGACTTGCTTGGGAGAGGAAGAGAGAGGAGTTTCTTGCTTTCTTCAGAGGGAAATTGGCTTCTTGGAATCCTAATTAGAGCAAATACATGATATCCTAGGAGATAAACACACACACAAAAATCTAATTGAGGAAACTGATTGCCACTAGCTTCACCAAGAAATGGAGAGGGAGCAGATGAGGATGGCCATCCTGAGGCAAGAACAAACATTCAGACAACAGGTTCATGAGCTGCACAGACTGTACCATGTTCAGAAACAGCTGATGAAACAGATGCAGATCGCCAAGCTGAACCAAGCTCAGGCAATCGCT GCCAACGCCGAAACCAAACCGAAATTCGAGATCACTTTCGCCGAGAATTCAACCAACCATCACCACCACCACCAATTCTACAGCTTCCAGAGCAGCAAGATCATGTCTCCCCCTGCAGCAGCAGCAGCAGCAGC AGATCAAGAAGAGGAAGAAGAATGCGACCT CCAGCTGACGCTGGC ] [+] EMBL AK066700 [ TTCATACATAAATGCCAACCTGTTTGCTTTCTCAGCTAGAAAAACAGAGTTCTTGGTTACAAAGATCTTGACTTGCTTGGGAGAGGAAGAGAGAGGAGTTTCTTGCTTTCTTCAGAGGGAAATTGGCTTCTTGGAATCCTAATTAGAGCAAATACATGATATCCTAGGAGATAAACACACACACAAAAATCTAATTGAGGAAACTGATTGCCACTAGCTTCACCAAGAAATGGAGAGGGAGCAGATGAGGATGGCCATCCTGAGGCAAGAACAAACATTCAGACAACAGGTTCATGAGCTGCACAGACTGTACCATGTTCAGAAACAGCTGATGAAACAGATGCAGATCGCCAAGCTGAACCAAGCTCAGGCAATCGCT GCCAACGCCGAAACCAAACCGAAATTCGAGATCACTTTCGCCGAGAATTCAACCAACCATCACCACCACCACCAATTCTACAGCTTCCAGAGCAGCAAGATCATGTCTCCCCCTGCAGCAGCAGCAGCAGCAGC AGATCAAGAAGAGGAAGAAGAATGCGACCT CCAGCTGACGCTGGCGACGGGGAGCAGCGGCGGCGGCGATGGCACGGCGAGGGGGCACAAGGGGAAGAAGGAGGTGAGGTCATCCAACTCGGACTCCGGCACGG CGG CGTCGTCGACGT CGACGGAGT CCG AGCT G GCCCAGTT CAAGAATCATCATCACCATCAGTTGG ACTG CGCGGCGGCGGCGCCGGTGGCGTCGCCGGCGGCGAGGTTCCAGGGCGAGAGCAAGAAGAGGGTGGTCGTCGTCGTGGACAACGAGATGAGCCTCCTCCAGCCTCCATGGCTCAACCAGTGCTTGAGCTTGAGGA ] [+] EMBL AU057011 [ ACAAAGATCTTGACTTGCTTGGGAGAGGAAGAGAGAGGAGTTTCTTGCTTTCTTCAGAGGGAAATTGGCTTCTTGGAATCCTAATTAGAGCAAATACATGATATCCTAGGAGATAAACACACACACAAAAATCTAATTGAGGAAACTGATTGCCACTAGCTTCACCAAGAAATGGAGAGGGAGCAGATGAGGATGGCCATCCTGAGGCAAGAACAAACATTCAGACAACAGGTTCATGAGCTGCACAGACTGTACCATGTTCAGAAACAGCTGATGAAACAGATGCAGATCGCCAAGCTGAACCAAGCTCAGGCAATCGCTNGCCAACGCCGAAACCAAACCGAAATTCGAGATCACTTTCGCCGAGAATTCAACCAACCATCACCACCACCACCAATTCTACAGCTTCCAGAGCAGCAAGATCATGTCTCCCCCTGCAGCAGCAGCAGCAGCAGC AGATCAAGAAGAGGAAGAAGAATGCGACCT CCAGCTGACGCTGGCGACGGGGAGCAGCGGCGGCGGCGATGGCACGGCGAGGGGGCACAAGGGGAAGAAGGAGGTGAGGTCATCCAANTCGGACTCCGGCACGG CGG CGTCGTCGACGT CGACGGAGT CCG AGCT G GCCCAGTT CAAGAATCATCATCACCATCAGTTGG ACTG CGCGGNGGCGGCGCCGGTGGCGTCG CGGCGGga ] [+] EMBL BM419378 [ CAGCAGCAGCAGCGAGATCAAGAAGAGGAAGAAGAATGCNACCTGCCAGCTGACGCTGGCGACGGGGAGCAGCGGCGGCGGCGATGGCACGGAGAGGGGGCACAAGGGGAAGAAGGAGGTGAGGTCATCCAACTCGGACTCCGGCACGG CGG CGTCGTCGACGT CGACGGAGT CCG AGCT G GCCCAGTT CAAGAATCATCATCACCATCAGTTGG ACTG CGCGGCGGCGGCGCCGGTGGCGTCGCCGGCGGCGAGGTTCCAGGGCGAGAGCAAGAAGAGGGTGGTCGTCGTCGTGGACAACGAGATGAGCCTCCTCCAGCCTCCATGGCTCAACCAGTGCTTGAGCTTGAGGA ] [+] EMBL BE230083 [ AATGCAACCT CCAGCTGACGCTGGCGACGGGGAGCAGCGGCGGCGGCGATGGCACGGAGAGGGGGCACAAGGGGAAGAAGGAGGTGAGGTCATCCAACTCGGACTCCGGCACGG CGG CGTCGTCGACGT CGACGGAGT CCG AGCT G GCCCAGTT CAAGAATCATCATCACCATCAGTTGG ACTG CGCGGCGGCGGCGCCGGTGGCGTCGCCGGCGGCGAGGTTCCAGGGCGAGAGCAAGAAGAGGGTGGTCGTCGTCGTGGACAACGAGATGAGCCTCCTCCAGCCTCCATGGCTCAACCAGTGCTTGAGCTTGAGGA ] [+] EMBL AU082267 [ GGCGAGGGGGCACAAGGGGAAGAAGGAGGTGAGGTCATCCAACTCGGACTCCGGCACGGCCGGNCGTCGTCGACGTCCGACGGAGTCCCGTAGCTNT CCCCAGTTCCAAGAATCATCATCACCATCAGTTGGTACTGNCGCGGCGGCGGCNCCGGTGGCGTCGCCGGCGGCGAGGTTCCAGGGCGAGAGCAAGAAGAGGGTGGTCGTCGTCGTGGACAACGAGATGAGCCTCCTCCAGCCTCCATGGCTCAACCAGTGCTTGAGCTTGAGGA ] [-] EMBL CF281752 [ GTGAGGTCATCCAACTCGGACTCCGGCACGG CGG CGTCGTCGACGT CGACGGAGT CCG AGCT GNGCCCAGTT CAAGAATCATCATCACCATCAGTTGG ACTG CGCGGCGGCGGCGCCGGTGGCGTCGCCGGCGGCGAGGTTCCAGGGCGAGAGCAAGAAGAGGGTGGTCGTCGTCGTGGACAACGAGATGAGCCTCCTCCAGCCTCCATGGCTCAACCAGTGCTTGAGCTTGAGGATGGCGTGATTAGCTTATAAAATAAAAATTGTAGATTTGTTGCATCGATGAAGAAGAAGAAGAAGAAGAAGAGATCGATCGATCGAGGAGGGATGGATGGATGCTGTTACTTACGTTGTAAATCACAGAGCTAATCTTCTTT ] [+] EMBL AU076285 [ GCATCGATGAAGAAGAAGAAGAAGAAGAAGAGATCGATCGATCGAGGAGGGATGGATGGATGCTGTTACTTACGTTGTAAATCACAGAGCTAATCTTCTTTTTTTCCTGCAAGAATTGGTAAAGAGATGAACAAA] consensusID : consensus_13337#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 559 fasta sequence [TCACTAGATATCATTCATACATAAATGCCAACCTGTTTGCTTTCTCAGCTAGAAAAACAGAGTTYTTGGTTACAAAGATCTTGACTTGCTTGGGAGAGGAAGAGAGAGGAGTTTCTTGCTTTCTTCAGAGGGAAATTGGCTTCTTGGAATCCTAATTAGAGCAAATACATGATATCCTAGGAGATAAACACACACACAAAAATCTAATTGAGGAAACTGATTGCCACTAGCTTCACCAAGAAATGGAGAGGGAGCAGATGAGGATGGCCATCCTGAGGCAAGAACAAACATTCAGACAACAGGTTCATGAGCTGCACAGACTGTACCATGTTCAGAAACAGCTGATGAAACAGATGCAGATCGCCAAGCTGAACCAAGCTCAGGCAATCGCTGCCAACGCCGAAACCAAACCGAAATTCGAGATCACTTTCGCCGAGAATTCAACCAACCATCACCACCACCACCAATTCTACAGCTTCCAGAGCAGCAAGATCATGTCTCCCCCTGCAGCAGCAGATCAAGAAGAGGAAGAAGAATGCGACCTCCAGCTGACGCTGGC] [+] EMBL CF303805 [TCACTAGATATCATTCATACATAAATGCCAACCTGTTTGCTTTCTCAGCTAGAAAAACAGAGTTCTTGGTTACAAAGATCTTGACTTGCTTGGGAGAGGAAGAGAGAGGAGTTTCTTGCTTTCTTCAGAGGGAAATTGGCTTCTTGGAATCCTAATTAGAGCAAATACATGATATCCTAGGAGATAAACACACACACAAAAATCTAATTGAGGAAACTGATTGCCACTAGCTTCACCAAGAAATGGAGAGGGAGCAGATGAGGATGGCCATCCTGAGGCAAGAACAAACATTCAGACAACAGGTTCATGAGCTGCACAGACTGTACCATGTTCAGAAACAGCTGATGAAACAGATGCAGATCGCCAAGCTGAACCAAGCTCAGGCAATCGCTGCCAACGCCGAAACCAAACCGAAATTCGAGATCACTTTCGCCGAGAATTCAACCAACCATCACCACCACCACCAATTCTACAGCTTCCAGAGCAGCAAGATCATGTCTCCCCCTGCAGCAGCAGATCAAGAAGAGGAAGAAGAATGCGACCTCCAGCTGACGCTGGC] [+] EMBL BE230717 [ cgrgCATAAATGCCAACCTGTTTGCTTTCTCAGCTAGAAAAACAGAGTYYTGBGTTACAAAGATCTTGACTTGCTTGGGAGAGGAAGAGAGAGGAGTTTCTTGCTTTCTTCAGAGGGAAATTGGCTTCTTGGAATCCTAATTAGAGCAAATACATGATATCCTAGGAGATAAACACACACACAAAAATCTAATTGAGGAAACTGATTGCCACTAGCTTCACCAAGAAATGGAGAGGGAGCAGATGAGGATGGCCATCCTGAGGCAAGAACAAACATTCAGACAACA GATCATGAGCTTCACAGACTGTACCATKTYAAG AACAGCTGATGAAACAGKTGCAGtc ] [+] EMBL OSS13041A [ AACCTGTTTGCTTTCTCAGCTAGAAAAACAGAGTTNTTGGTTACAAAGATCTTGACTTGCTTGGGAGAGGAAGAGAGAGGAGTTTCTTGCTTTCTTCAGAGGGAAATTGGCTTCTTGGAATCCTAATTAGAGCAAATACATGNTATCCTAGGAGATAAACACACACACAAAAATCTAATTGAGGAAACTGATTGCCACTAGCTTCACCAAGAAATGGAGAGGGAGCAGATGAGGATGGCCATCCTGAGGCAAGAACAAACATTCAGACAACAGGTTCATGAGCTGCACAGACTGTACCATGTTCAGAACCAGCTGATGAAACAGATGCAGATCGCCAAGCTGACCCAAGCTCAGGCAATCGCTGCC ACGCCGGAACC AACCG AATTCGAGATCACTTTTGCCGAGAtt ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13337#0 AGAGAATCTTAAAATCTCTCCTCTCTCTCCAAGTCCCTGCCTCTCACTAGATATCATTCA 60 consensus_13337#1 -------------------------------------------TCACTAGATATCATTCA 17 ***************** consensus_13337#0 TACATAAATGCCAACCTGTTTGCTTTCTCAGCTAGAAAAACAGAGTTCTTGGTTACAAAG 120 consensus_13337#1 TACATAAATGCCAACCTGTTTGCTTTCTCAGCTAGAAAAACAGAGTTYTTGGTTACAAAG 77 *********************************************** ************ consensus_13337#0 ATCTTGACTTGCTTGGGAGAGGAAGAGAGAGGAGTTTCTTGCTTTCTTCAGAGGGAAATT 180 consensus_13337#1 ATCTTGACTTGCTTGGGAGAGGAAGAGAGAGGAGTTTCTTGCTTTCTTCAGAGGGAAATT 137 ************************************************************ consensus_13337#0 GGCTTCTTGGAATCCTAATTAGAGCAAATACATGATATCCTAGGAGATAAACACACACAC 240 consensus_13337#1 GGCTTCTTGGAATCCTAATTAGAGCAAATACATGATATCCTAGGAGATAAACACACACAC 197 ************************************************************ consensus_13337#0 AAAAATCTAATTGAGGAAACTGATTGCCACTAGCTTCACCAAGAAATGGAGAGGGAGCAG 300 consensus_13337#1 AAAAATCTAATTGAGGAAACTGATTGCCACTAGCTTCACCAAGAAATGGAGAGGGAGCAG 257 ************************************************************ consensus_13337#0 ATGAGGATGGCCATCCTGAGGCAAGAACAAACATTCAGACAACAGGTTCATGAGCTGCAC 360 consensus_13337#1 ATGAGGATGGCCATCCTGAGGCAAGAACAAACATTCAGACAACAGGTTCATGAGCTGCAC 317 ************************************************************ consensus_13337#0 AGACTGTACCATGTTCAGAAACAGCTGATGAAACAGATGCAGATCGCCAAGCTGAACCAA 420 consensus_13337#1 AGACTGTACCATGTTCAGAAACAGCTGATGAAACAGATGCAGATCGCCAAGCTGAACCAA 377 ************************************************************ consensus_13337#0 GCTCAGGCAATCGCTGCCAACGCCGAAACCAAACCGAAATTCGAGATCACTTTCGCCGAG 480 consensus_13337#1 GCTCAGGCAATCGCTGCCAACGCCGAAACCAAACCGAAATTCGAGATCACTTTCGCCGAG 437 ************************************************************ consensus_13337#0 AATTCAACCAACCATCACCACCACCACCAATTCTACAGCTTCCAGAGCAGCAAGATCATG 540 consensus_13337#1 AATTCAACCAACCATCACCACCACCACCAATTCTACAGCTTCCAGAGCAGCAAGATCATG 497 ************************************************************ consensus_13337#0 TCTCCCCCTGCAGCAGCAGCAGCAGCAGCAGATCAAGAAGAGGAAGAAGAATGCGACCTC 600 consensus_13337#1 TCTCCCCCTGCAGCAGCAG------------ATCAAGAAGAGGAAGAAGAATGCGACCTC 545 ******************* ***************************** consensus_13337#0 CAGCTGACGCTGGCGACGGGGAGCAGCGGCGGCGGCGATGGCACGGCGAGGGGGCACAAG 660 consensus_13337#1 CAGCTGACGCTGGC---------------------------------------------- 559 ************** consensus_13337#0 GGGAAGAAGGAGGTGAGGTCATCCAACTCGGACTCCGGCACGGCGGCGTCGTCGACGTCG 720 consensus_13337#1 ------------------------------------------------------------ consensus_13337#0 ACGGAGTCCGAGCTGGCCCAGTTCAAGAATCATCATCACCATCAGTTGGACTGCGCGGCG 780 consensus_13337#1 ------------------------------------------------------------ consensus_13337#0 GCGGCGCCGGTGGCGTCGCCGGCGGCGAGGTTCCAGGGCGAGAGCAAGAAGAGGGTGGTC 840 consensus_13337#1 ------------------------------------------------------------ consensus_13337#0 GTCGTCGTGGACAACGAGATGAGCCTCCTCCAGCCTCCATGGCTCAACCAGTGCTTGAGC 900 consensus_13337#1 ------------------------------------------------------------ consensus_13337#0 TTGAGGATGGCGTGATTAGCTTATAAAATAAAAATTGTAGATTTGTTGCATCGATGAAGA 960 consensus_13337#1 ------------------------------------------------------------ consensus_13337#0 AGAAGAAGAAGAAGAAGAGATCGATCGATCGAGGAGGGATGGATGGATGCTGTTACTTAC 1020 consensus_13337#1 ------------------------------------------------------------ consensus_13337#0 GTTGTAAATCACAGAGCTAATCTTCTTTTTTTCCTGCAAGAATTGGTAAAGAGATGAACA 1080 consensus_13337#1 ------------------------------------------------------------ consensus_13337#0 AA 1082 consensus_13337#1 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||