These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13355#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1603 fasta sequence [GAACCCGACCTCCCATCTCTTCCTCCTCCTCTCCTCGATTCCTCTCCCTCCCAATCCACCTCCTCCTCCTCGCCGCCGCTCGCCGCCGCAATCCGCTCGCCGGAGGCGGACTCGCCGGCGTCGGACGCTGCCTGCGCCGAGGGCGCTGCTGCATTTGTTTGCCTGTGGCTCGGGGGAAGAGCGAGCGGCCGTGTGGGCTTGCTCTGCTCGAGGGCCGCGTTCGCGTGGTTTCTCTCCTCGTGTGGGTTGCTAGATTAAGGTGGCCTTTTTGCTATCACAATTTATCAATATCCGGGTTACAATGGAATGAGTGTGCGAGTTTGGTTGCCGGGAAGCATTGTTGACGAATCAGATGGGTACTAATGATCCTGGCACGCCGTCCAAGGCAACAAAGGCATCAGAACCGGAGCAGTCTCCAGCCACTACATCTGGCACTACAGCTCCAGTTTACCCTGAATGGCCTGGTTTTCAGGCCTACTCGGCAATTCCACCGCATGGGTTCTTTCCACCTCCTGTTGCTGCAAGTCCCCAGGCTCATCCCTACATGTGGGGAGCTCAGCCCATGGTGCCACCTTACGGGACACCACCACCTTATATGATGTATCCTCCAGGAACTGTATATGCACATCCCTCTACTCCTGGTGTGCATCCATTTAATCACTACCCTATGCTGGCAAATGGAAATGTTGAAACTGCTGGAACTGCACCAGGTGCTTCAGAAATTAACGGGAAAAATGAGCTTGGCAGAACATCTGGTCCATCTGCCAACGGGATTACCTCCCACAGTGAGAGTGGAAGTGAGAGTGAAAGTGAAGGAAGTGATGCCAACTCTCAAAATGATTCACATTCAAAGGAAAATGATGTAAAGGAAGATGGTAGTTCTCAGAATGGCATATCACATACAGCATTAAATCAGAACATGTCGATGGCTCCAACTCAAACGGGTGTAGTAATCGGGGGAGTTGCTCCCACAACAAACTTGAACATAGGAATGGACTACTGGGGTGCTGCTGGTTCTTCGCCTGTTCCTGCAATGCATGGCAAAGCATCGTCTGGTTCAGTTCGAGGAGAGCAATGGGATGAAAGAGAGCTCAAGAAGCAGAAAAGGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAGGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGA-AAACTCCTCTCTTAGGGCTGAGCTTGAACGGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAGGAAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAACGACACCAATGGCACCCACCAGAAGCAACAGGATT-CTGATGCTCAGCCTAATGATGCG-CCTTGAGAGTTATCATCACGTGTAGTAGCATCTAATTGTTTAGCTCATGATTCTAGTAGGACATCACCATTTGTGTTAGATGAATTTACTAAGCATCTTTCTGTGCCAATTCGATCAGAATCTGACATGGCAAAT-TGT-CGAGACCAAACTGTCTCTTACCTCTATT-CCAGTTGCTTGCAGCTCCATTGATAAAAAAAAAAAAAAAAAAGGGAA] [+] EMBL AK111901 [GAACCCGACCTCCCATCTCTTCCTCCTCCTCTCCTCGATTCCTCTCCCTCCCAATCCACCTCCTCCTCCTCGCCGCCGCTCGCCGCCGCAATCCGCTCGCCGGAGGCGGACTCGCCGGCGTCGGACGCTGCCTGCGCCGAGGGCGCTGCTGCATTTGTTTGCCTGTGGCTCGGGGGAAGAGCGAGCGGCCGTGTGGGCTTGCTCTGCTCGAGGGCCGCGTTCGCGTGGTTTCTCTCCTCGTGTGGGTTGCTAGATTAAGGTGGCCTTTTTGCTATCACAATTTATCAATATCCGGGTTACAATGGAATGAGTGTGCGAGTTTGGTTGCCGGGAAGCATTGTTGACGAATCAGATGGGTACTAATGATCCTGGCACGCCGTCCAAGGCAACAAAGGCATCAGAACCGGAGCAGTCTCCAGCCACTACATCTGGCACTACAGCTCCAGTTTACCCTGAATGGCCTGGTTTTCAGGCCTACTCGGCAATTCCACCGCATGGGTTCTTTCCACCTCCTGTTGCTGCAAGTCCCCAGGCTCATCCCTACATGTGGGGAGCTCAGCCCATGGTGCCACCTTACGGGACACCACCACCTTATATGATGTATCCTCCAGGAACTGTATATGCACATCCCTCTACTCCTGGTGTGCATCCATTTAATCACTACCCTATGCTGGCAAATGGAAATGTTGAAACTGCTGGAACTGCACCAGGTGCTTCAGAAATTAACGGGAAAAATGAGCTTGGCAGAACATCTGGTCCATCTGCCAACGGGATTACCTCCCACAGTGAGAGTGGAAGTGAGAGTGAAAGTGAAGGAAGTGATGCCAACTCTCAAAATGATTCACATTCAAAGGAAAATGATGTAAAGGAAGATGGTAGTTCTCAGAATGGCATATCACATACAGCATTAAATCAGAACATGTCGATGGCTCCAACTCAAACGGGTGTAGTAATCGGGGGAGTTGCTCCCACAACAAACTTGAACATAGGAATGGACTACTGGGGTGCTGCTGGTTCTTCGCCTGTTCCTGCAATGCATGGCAAAGCATCGTCTGGTTCAGTTCGAGGAGAGCAATGGGATGAAAGAGAGCTCAAGAAGCAGAAAAGGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAGGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGA AAACTCCTCTCTTAGGGCTGAGCTTGAACGGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAGGAAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAACGACACCAATGGCACCCACCAGAAGCAACAGGATT CTGATGCTCAGCCTAATGATGCG CCTTGAGAGTTATCATCACGTGTAGTAGCATCTAATTGTTTAGCTCATGATTCTAGTAGGACATCACCATTTGTGTTAGATGAATTTACTAAGCATCTTTCTGTGCCAATTCGATCAGAATCTGACATGGCAAAT TGT CGAGACCAAACTGTCTCTTACCTCTATT CCAGTTGCTTGCAGCTCCA ] [+] EMBL AK112009 [ TCTCCCTCCCAATCCACCTCCTCCTCCTCGCCGCCGCTCGCCGCCGCAATCCGCTCGCCGGAGGCGGACTCGCCGGCGTCGGACGCTGCCTGCGCCGAGGGCGCTGCTGCATTTGTTTGCCTGTGGCTCGGGGGAAGAGCGAGCGGCCGTGTGGGCTTGCTCTGCTCGAGGGCCGCGTTCGCGTGGTTTCTCTCCTCGTGTGGGTTGCTAGATTAAGGTGGCCTTTTTGCTATCACAATTTACCAATATCCGGGTTACAATGGAATGAGTGTGCGAGTTTGGTTGCCGGGAAGCATTGTTGACGAATCAGATGGGTACTAATGATCCTGGCACGCCGTCCAAGGCAACAAAGGCATCAGAACCGGAGCAGTCTCCAGCCACTACATCTGGCACTACAGCTCCAGTTTACCCTGAATGGCCTGGTTTTCAGGCCTACTCGGCAATTCCACCGCATGGGTTCTTTCCACCTCCTGTTGCTGCAAGTCCCCAGGCTCATCCCTACATGTGGGGAGCTCAGCCCATGGTGCCACCTTACGGGACACCACCACCTTATATGATGTATCCTCCAGGAACTGTATATGCACATCCCTCTACTCCTGGTGTGCATCCATTTAATCACTACCCTATGCTGGCAAATGGAAATGTTGAAACTGCTGGAACTGCACCAGGTGCTTCAGAAATTAACGGGAAAAATGAGCTTGGCAGAACATCTGGTCCATCTGCCAACGGGATTACCTCCCACAGTGAGAGTGGAAGTGAGAGTGAAAGTGAAGGAAGTGATGCCAACTCTCAAAATGATTCACATTCAAAGGAAAATGATGTAAAGGAAGATGGTAGTTCTCAGAATGGCATATCACATACAGCATTAAATCAGAACATGTCGATGGCTCCAACTCAAACGGGTGTAGTAATCGGGGGAGTTGCTCCCACAACAAACTTGAACATAGGAATGGACTACTGGGGTGCTGCTGGTTCTTCGCCTGTTCCTGCAATGCATGGCAAAGCATCGTCTGGTTCAGTTCGAGGAGAGCAATGGGATGAAAGAGAGCTCAAGAAGCAGAAAAGGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAGGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGA AAACTCCTCTCTTAGGGCTGAGCTTGAACGGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAGGAAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAACGACACCAATGGCACCCACCAGAAGCAACAGGATT CTGATGCTCAGCCTAATGATGCG CCTTGAGAGTTATCATCACGTGTAGTAGCATCTAATTGTTTAGCTCATGATTCTAGTAGGACATCACCATTTGTGTTAGATGAATTTACTAAGCATCTTTCTGTGCCAATTCGATCAGAATCTGACATGGCAAAT TGT CGAGACCAAACTGTCTCTTACCTCTATT CCAGTTGC ] [+] EMBL CB679401 [ TCTCCCTCCCAATCCACCTCCTCCTCCTCGCCGCCGCTCGCCGCCGCAATCCGCTCGCCGGAGGCGGACTCGCCGGCGTCGGACGCTGCCTGCGCCGAGGGCGCTGCTGCATTTGTTTGCCTGTGGCTCGGGGGAAGAGCGAGCGGCCGTGTGGGCTTGCTCTGCTCGAGGGCCGCGTTCGCGTGGTTTCTCTCCTCGTGTGGGTTGCTAGATTAAGGTGGCCTTTTTGCTATCACAATTTATCAATATCCGGGTTACAATGGAATGAGTGTGCGAGTTTGGTTGCCGGGAAGCATTGTTGACGAATCAGATGGGTACTAATGATCCTGGCACGCCGTCCAAGGCAACAAAGGCATCAGAACCGGAGCAGTCTCCAGCCACTACATCTGGCACTACAGCTCCAGTTTACCCTGAATGGCCTGGTTTTCAGGCCTACTCGGCAATTCCACCGCATGGGTTCTTTCCACCTCCTGTTGCTGCAAGTCCCCAGGCTCATCCCTACATGTGGGGAGCTCAGCCCATGGTGCCACCTTACGGGACACCACCACCTTATATGATGTATCCTCCAGGAACTGTATATGCACATCCCTCTACTCCTGGTGTGCATCCATTTAATCACTACCCTATGCTGGCAAATGGAAATGTTGAAACTGCTGGAACTGCACCAGGTGCTTCAGAAATTAACGGGAAAAATGAGCTTGGCAGAACATCTGGTCCATCTGCCAACGGGATTACCTCCCACAGTGAGAGTGGAAGTGAGAGTGAAAGTGAAGGAAGTGATGCCAACTC ] [+] EMBL CB678016 [ CGCCGCCGCTCGCCGCCGCAATCCGCTCGCCGGAGGCGGACTCGCCGGCGTCGGACGCTGCCTGCGCCGAGGGCGCTGCTGCATTTGTTTGCCTGTGGCTCGGGGGAAGAGCGAGCGGCCGTGTGGGCTTGCTCTGCTCGAGGGCCGCGTTCGCGTGGTTTCTCTCCTCGTGTGGGTTGCTAGATTAAGGTGGCCTTTTTGCTATCACAATTTATCAATATCCGGGTTACAATGGAATGAGTGTGCGAGTTTGGTTGCCGGGAAGCATTGTTGACGAATCAAATGGGTACTAATGATCCTGGCACGCCGTCCAAGGCAACAAAGGCATCATAACCGGAGCAGTCTCCAGCCACTACATCTGGCACTACAGCTCCAGTTTACCCTGAATGGCCTGGTTTTCAGGCCTACTCGGCAATTCCACCGCATGGGTTCTTTCCACCTCCTGTTGCTGCAAGTCCCCAGGCTCATCCCTACATGTGGGGAGCTCACCCCATGGTGCCACCTTACGGGACACCACCACCTTATATGATGTATCCTCCAAGAACTGTATATGCACATCCCTCTACTCCTGGTGTGCATCCATTTAATCACTACCCTATGCTGGCAAATGGAAATGTTGAAACTGCTGGAACTGCACCACGTGCTTCAGAAATTAACGGGAACAATGAGCTTGGCAGAACATCTGGTCCATCTGCCAACGGGA ] [+] EMBL BP184879 [ acgaggGCGAGTTTGGTTGCCGGGAAGCATTGTTGACGAATCAGATGGGTACTAATGATCCTGGCACGCCGTCCAAGGCAACAAAGGCATCAGAACCGGAGCAGTCTCCAGCCACTACATCTGGCACTACAGCTCCAGTTTACCCTGAATGGCCTGGTTTTCAGGCCTACTCGGCAATTCCACCGCATGGGTTCTTTCCACCTCCTGTTGCTGCAAGTCCCCAGGCTCATCCCTACATGTGGGGAGCTCAGCCCATGGTGCCACCTTACGGGACACCACCACCTTATATGATGTATCCTCCAGGAACTGTATATGCACATCCCTCTACTCCTGGTGTGCATCCATTTAATCACTACCCTATGCTGGCAAATGGAAATGTTGAAACTGCTGGAACTGCACCAGGTGCTTCAGAAATTAACGGGAAAAATGAGCTTGGCAGAACATCTGGTCCATCTGCCAACGGGATTACCTCCCACAGTGAGAGTGGAAGTGAGAGTGAAAGTGAAGGAAGTGATGCCAACTCTCAAAATGATTCACATTCAAAGGAAAATGATGTAAAGGAAGATGGTAGTTCTCAGAATGGCATATCACATACAGCATTAAATCAGAACATGTCGATGGCTCCAACTCAAACGGGTGTAG ] [+] EMBL CB666775 [ ACCCTGAATGGCCTGGTTTTCAGGCCTACTCGGCAATTCCACCGCATGGGTTCTTTCCACCTCCTGTTGCTGCAAGTCCCCAGGCTCATCCCTACATGTGGGGAGCTCAGCCCATGGTGCCACCTTACGGGACACCACCACCTTATATGATGTATCCTCCAGGAACTGTATATGCACATCCCTCTACTCCTGGTGTGCATCCATTTAATCACTACCCTATGCTGGCAAATGGAAATGTTGAAACTGCTGGAACTGCACCAGGTGCTTCAGAAATTAACGGGAAAAATGAGCTTGGCAGAACATCTGGTCCATCTGCCAACGGGATTACCTCCCACAGTGAGAGTGGAAGTGAGAGTGAAAGTGAAGGAAGTGATGCCAACTCTCAAAATGATTCACATTCAAAGGAAAATGATGTAAAGGAAGATGGTAGTTCTCAGAATGGCATATCACATACAGCATTAAATCAGAACATGTCGATGGCTCCAACTCAAACGGGTGTAGTAATCGGGGGAGTTGCTCCCACAACAAACTTGAACATAGGAATGGACTACTGGGGTGCTGCTGGTTCTTCGCCTGTTCCTGCAATGCATGGCAAAGCATCGTCTGGTTCAGTTCGAGGAGAGCAATGGGATGAAAGAGAGCTCAAGAAGCAGAAAAGGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAGGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGA AAACTCCTCTCTTANGGCTGAGCTTGA ] [+] EMBL BP184665 [ TGCATCCATTTAATCACTACCCTATGCTGGCAAATGGAAATGTTGAAACTGCTGGAACTGCACCAGGTGCTTCAGAAATTAACGGGAAAAATGAGCTTGGCAGAACATCTGGTCCATCTGCCAACGGGATTACCTCCCACAGTGAGAGTGGAAGTGAGAGTGAAAGTGAAGGAAGTGATGCCAACTCTCAAAATGATTCACATTCAAAGGAAAATGATGTAAAGGAAGATGGTAGTTCTCAGAATGGCATATCACATACAGCATTAAATCAGAACATGTCGATGGCTCCAACTCAAACGGGTGTAGTAATCGGGGGAGTTGCTCCCACAACAAACTTGAACATAGGAATGGACTACTGGGGTGCTGCTGGTTCTTCGCCTGTTCCTGCAATGCATGGCAAAGCATCGTCTGGTTCAGTTCGAGGAGAGCAATGGGATGAAAGAGAGCTCAAGAAGCAGAAAAGGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAGGCTGAGTGTGAAGAGCTTTCTGTA ] [-] EMBL CB661318 [ TGAGCTTGGCAGAACATCTGGTCCATCTGCCAACGGGATTACCTCCCACAGTGAGAGTGGAAGTGAGAGTGAAAGTGAAGGAAGTGATGCCAACTCTCAAAATGATTCACATTCAAAGGAAAATGATGTAAAGGAAGATGGTAGTTCTCAGAATGGCATATCACATACAGCATTAAATCAGAACATGTCGATGGCTCCAACTCAAACGGGTGTAGTAATCGGGGGAGTTGCTCCCACAACAAACTTGAACATAGGAATGGACTACTGGGGTGCTGCTGGTTCTTCGCCTGTTCCTGCAATGCATGGCAAAGCATCGTCTGGTTCAGTTCGAGGAGAGCAATGGGATGAAAGAGAGCTCAAGAAGCAGAAAAGGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAGGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGA AAACTCCTCTCTTAGGGCTGAGCTTGAACGGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAGGAAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAACGACACCAATGGCACCCACCAGAAGCAACAGGATT CTGATGCTCAGCCTAATGATGCG CCTTGAGAGTTATCATCACGTGTAGTAGCATCTAATTGTTTAGCTCATGATTCTAGTAGGACATCACCATTTGTGTTAGATGAATTTACTAAGCATCTTTCTGTGCCAATTCGATCAGAATCTGACATGGCAAATGTGT CGAGACCAAACTGTCTCTTACCTC ] [-] EMBL CB666776 [ GGGATTACCTCCCACAGTGAGAGTGGAAGTGAGAGTGAAAGTGAAGGAAGTGATGCCAACTCTCAAAATGATTCACATTCAAAGGAAAATGATGTAAAGGAAGATGGTAGTTCTCAGAATGGCATATCACATACAGCATTAAATCAGAACATGTCGATGGCTCCAACTCAAACGGGTGTAGTAATCGGGGGAGTTGCTCCCACAACAAACTTGAACATAGGAATGGACTACTGGGGTGCTGCTGGTTCTTCGCCTGTTCCTGCAATGCATGGCAAAGCATCGTCTGGTTCAGTTCGAGGAGAGCAATGGGATGAAAGAGAGCTCAAGAAGCAGAAAAGGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAGGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGA AAACTCCTCTCTTAGGGCTGAGCTTGAACGGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAGGAAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAACGACACCAATGGCACCCACCAGAAGCAACAGGATT CTGATGCTCAGCCTAATGATGCG CCTTGAGAGTTATCATCACGTGTAGTAGCATCTAATTGTTTAGCTCATGATTCTAGTAGGACATCACCATTTGTGTTAGATGAATTTACTAAGCATCTTTCTGTGCCAATTCGATCAGAATCTGACATGGCAAAT TGTCCTATA AGGACTGTCTCTTACCTCTATT CC ] [-] EMBL CB679402 [ TCTGAATGGCATATCACATACAGCATTAAATCAGAACATGTCGATGGCTCCAACTCAAACGGGTGTAGTAATCGGGGGAGTTGCTCCCTCACCAAACTTGAACATAGGAATGGACTCCTGGGGGGCTGCTGGTTCTTCGCCTGTTCCTGCAATGCATGGCAAAGCATCGTTTGGTTCAGTTAGAGGAGAGCAATGGGAGGAAAGAGAGCTCACGAAGCAGAAAAGGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGGGCAAGCAGGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGGCAATTTAAGGGCAGA AAACTCCTTTCTTAGGGCTGAGCTTGAACGGATCAAAAAGGAGTACGAGGCACTTTTTTCACACAATGCTTCACTCAAGGAAAAAATAGAGGGGAACAGTGATTCAATCCCTTATATGAATGAACAGAACGACACCAATGGCACCCCCCAGAAGCAACAGGATT TTGATGCTCAGCCTAATGATGCG CCTTCCGAGTTATCATCCCGTGTAGTAGCATCTAATTGTTTAGCTCATGATTCTAGTAGGACATCACCATTTGTGTTAGATGAATTTATTAAGCATCTTTCTGTGCCAATTCGATCAGAATGTGCCATGGCAAAT TGT GGAGACCAACCTGTCTGTTACCTTTATTAAGGGTTGCTTGCAGCTCCATTGATAAAAAAAAAAAAAAAAAAGGGAA] [-] EMBL BE040235 [ GGTG TGCTGGTT TTCGCCTGTTCCTGCAATGCATGGCAACTCATCGTTTGGTTCAGTTCGAGGAGAGCAATGGTATGAAAGAGAGCTCAAGAAGCAGAAAAGGAACCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAGGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGCCAATTTAAGGGCAGACTAACTCCTCTCTTAGGGCTGAGCTTGAACGGATCAAAAAGGAGTACCTGGCACTTCTTTCACACAATGCTTCACTCAAGGAAAAACTAGAGGGGACCAGTGATTCAATCCCTTATATGAATGAACAGACCGACACCAATGGCACCCACCAGAAGCAACAGGATTCCTGATGCTCAGCCTAATGATGCGCCCTCCACAGTTATCATCACGTGTAGTAGCATCTAATTGTTTAGCTCATGATTCTAGTAGGACATCACCATTTGTGTTAGATGAATTTACTAAGCATCTTTCTGTGCCAATTCGATCAGAATCTGACATGGCAAAT TGT TGAGACCAAACTGTCTCTCACCTCTAT ] consensusID : consensus_13355#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 864 fasta sequence [CGCGTAGGCGCGGTTTTACAACCAAGCGGGGCNCTAAATATGCCCCTTCCCACAGGGATAACGCGGAGAGGCAACCCCCCAAGTATTGGCCGCCCCCTAGTAAATTTTTTGTTTTTTTTCAAGCTATTGGCCTTTTAGCGGAGAAATCTTCCCTAAAAAGCGATAACCGTGTATGTGCTAAGATTCACTCAAGGGAAATTGGTAAGGAAATGGAGTTTCAGAAGGCAATCTCAACAGCCTTATCTCAACCATGTAAGGGTCCACTCACGGGGGTAGTATCGGGGAGTTGCTCCACACAACTTGACACATAGNANTGGACTCTGGGGGTGCTGCTGGTCTTCGCCTGTTCNTGCAATGCATGGCAAAGCATCGTCTGGTTCAGTTCGAGGAGAGCAATGGGATGAAAGAGAGCTCAAGAAGCAGANAAGGAAGCAGTCTAATCGGGAATCAGCACGAGATTCCGGGTTGCGCAAGCAGGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGAAAACTCTCTCTTAGGGCTGAGCTTGAACGGATCAAAAGGAAGTACGAGGCACTTCTNTCACACAATGCTTCACTCAAGGAAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAACGACACCAATGGCACCCACCAGAAGCAACAGGATTCTGATGCTCAGCNTAATGATGCGCCTTGAGAGTTATCATCACGTGTAGTAGCATCTAATTGTTTAGCTCATGATTCTAGTAGGACATCACCATTTGTGTTAGATGAATTTACTAAGCATCTTTCTGTGCAAATTGATCAGAATCTGACATGGCAAATTGTCGAGACCAAACTGTCTC] [-] EMBL AW155056 [CGCGTAGGCGCGGTTTTACAACCAAGCGGGGCNCTAAATATGCCCCTTCCCACAGGGATAACGCGGAGAGGCAACCCCCCAAGTATTGGCCGCCCCCTAGTAAATTTTTTGTTTTTTTTCAAGCTATTGGCCTTTTAGCGGAGAAATCTTCCCTAAAAAGCGATAACCGTGTATGTGCTAAGATTCACTCAAGGGAAATTGGTAAGGAAATGGAGTTTCAGAAGGCAATCTCAACAGCCTTATCTCAACCATGTAAGGGTCCACTCACGGGGGTAGTATCGGGGAGTTGCTCCACACAACTTGACACATAGNANTGGACTCTGGGGGTGCTGCTGGTCTTCGCCTGTTCNTGCAATGCATGGCAAAGCATCGTCTGGTTCAGTTCGAGGAGAGCAATGGGATGAAAGAGAGCTCAAGAAGCAGANAAGGAAGCAGTCTAATCGGGAATCAGCACGAGATTCCGGGTTGCGCAAGCAGGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGAAAACTCTCTCTTAGGGCTGAGCTTGAACGGATCAAAAGGAAGTACGAGGCACTTCTNTCACACAATGCTTCACTCAAGGAAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAACGACACCAATGGCACCCACCAGAAGCAACAGGATTCTGATGCTCAGCNTAATGATGCGCCTTGAGAGTTATCATCACGTGTAGTAGCATCTAATTGTTTAGCTCATGATTCTAGTAGGACATCACCATTTGTGTTAGATGAATTTACTAAGCATCTTTCTGTGCAAATTGATCAGAATCTGACATGGCAAATTGTCGAGACCAAACTGTCTC] consensusID : consensus_13355#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 772 fasta sequence [CGCCGGAGGCGGACTCGCCGGCGTCGGACGCTGCCTGCGCCGAGGGCGCTGCTGCATTTGTTTGCCTGTGGCTCGGGGGAAGAGCGAGCGGCCGTGTGGGCTTGCTCTGCTCGAGGGCCGCGTTCGCGTGGTTTCTCTCCTCGTGTGGGTTGCTAGATTAAGGTTGGTGAATGGTGAGGGGTTGAATTGTGTGGCCTCGTCGTGCTCGATTGCTTTTGCATTGTGCTTTGCGTGGATTCTGATTTCTCCTCCAATTTAAGCTAGTTTGACATGTATCCGATATTGACGAGGGGTAGATAGAATTCGGTGAATTGTAGATTTGGTTTGGTGCATCATAATGCATTTGGTGTTTTTTCAAATTTAGTGGGAATTTAGATTAGTGTCCAGCTGAGGAAATACGGGATCGAGACAGTGAGATTTGTCATTGCAAAATCTATCATGTTTTTCCCCTTCTTTGCTGTTCATACCAGGATTGTTTATTTCACCCAGCAGGTGGCCTTTTTGCTATCACAATTTATCAATATCCGGGTTACAATGGAATGAGTGTGCGAGTTTGGTTGCCGGGAAGCATTGTTGACGAATCAGATGGGTACTAATGATCCTGGCACGCCGTCCAAGGCAACAAAGGCATCAGAACCGGAGCAGTCTCCAGCCACTACATCTGGCACTACAGCTCCAGTTTACCCTGAATGGCCTGGTTTTCAGGCCTACTCGGCAATTCCACCGCATGGGTTCTTTCCCCTCCTGTTGCTGCAAGTCCCCAGGCTCATCC] [+] EMBL CB661317 [CGCCGGAGGCGGACTCGCCGGCGTCGGACGCTGCCTGCGCCGAGGGCGCTGCTGCATTTGTTTGCCTGTGGCTCGGGGGAAGAGCGAGCGGCCGTGTGGGCTTGCTCTGCTCGAGGGCCGCGTTCGCGTGGTTTCTCTCCTCGTGTGGGTTGCTAGATTAAGGTTGGTGAATGGTGAGGGGTTGAATTGTGTGGCCTCGTCGTGCTCGATTGCTTTTGCATTGTGCTTTGCGTGGATTCTGATTTCTCCTCCAATTTAAGCTAGTTTGACATGTATCCGATATTGACGAGGGGTAGATAGAATTCGGTGAATTGTAGATTTGGTTTGGTGCATCATAATGCATTTGGTGTTTTTTCAAATTTAGTGGGAATTTAGATTAGTGTCCAGCTGAGGAAATACGGGATCGAGACAGTGAGATTTGTCATTGCAAAATCTATCATGTTTTTCCCCTTCTTTGCTGTTCATACCAGGATTGTTTATTTCACCCAGCAGGTGGCCTTTTTGCTATCACAATTTATCAATATCCGGGTTACAATGGAATGAGTGTGCGAGTTTGGTTGCCGGGAAGCATTGTTGACGAATCAGATGGGTACTAATGATCCTGGCACGCCGTCCAAGGCAACAAAGGCATCAGAACCGGAGCAGTCTCCAGCCACTACATCTGGCACTACAGCTCCAGTTTACCCTGAATGGCCTGGTTTTCAGGCCTACTCGGCAATTCCACCGCATGGGTTCTTTCCCCTCCTGTTGCTGCAAGTCCCCAGGCTCATCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13355#0 GAACCCGACCTCCCATCTCTTCCTCCTCCTCTCCTCGATTCCTCTCCCTCCCAATCCACC 60 consensus_13355#1 ------------------------------------------------------------ consensus_13355#2 ------------------------------------------------------------ consensus_13355#0 TCCTCCTCCTCGCCGCCGCTCGCCGCCGCAATCCGCTCGCCGGAGGCGGACTCGCCGGCG 120 consensus_13355#1 ------------------------------------------------------------ consensus_13355#2 ------------------------------------------------------------ consensus_13355#0 TCGGACGCTGCCTGCGCCGAGGGCGCTGCTGCATTTGTTTGCCTGTGGCTCGGGGGAAGA 180 consensus_13355#1 ------------------------------------------------------------ consensus_13355#2 ------------------------------------------------------------ consensus_13355#0 GCGAGCGGCCGTGTGGGCTTGCTCTGCTCGAGGGCCGCGTTCGCGTGGTTTCTCTCCTCG 240 consensus_13355#1 ------------------------------------------------------------ consensus_13355#2 ------------------------------------------------------------ consensus_13355#0 TGTGGGTTGCTAGATTAAGGTGGCCTTTTTGCTATCACAATTTATCAATATCCGGGTTAC 300 consensus_13355#1 ------------------------------------------------------------ consensus_13355#2 ------------------------------------------------------------ consensus_13355#0 AATGGAATGAGTGTGCGAGTTTGGTTGCCGGGAAGCATTGTTGACGAATCAGATGGGTAC 360 consensus_13355#1 ------------------------------------------------------------ consensus_13355#2 ------------------------------------------------------------ consensus_13355#0 TAATGATCCTGGCACGCCGTCCAAGGCAACAAAGGCATCAGAACCGGAGCAGTCTCCAGC 420 consensus_13355#1 ------------------------------------------------------------ consensus_13355#2 ------------------------------------------------------------ consensus_13355#0 CACTACATCTGGCACTACAGCTCCAGTTTACCCTGAATGGCCTGGTTTTCAGGCCTACTC 480 consensus_13355#1 ------------------------------------------------------------ consensus_13355#2 ------------------------------------------------------------ consensus_13355#0 GGCAATTCCACCGCATGGGTTCTTTCCACCTCCTGTTGCTGCAAGTCCCCAGGCTCATCC 540 consensus_13355#1 ------------------------------------------------------------ consensus_13355#2 ------------------------------------------------------------ consensus_13355#0 CTACATGTGGGGAGCTCAGCCCATGGTGCCACCTTACGGGACACCACCACCTTATATGAT 600 consensus_13355#1 ------------------------------------------------------------ consensus_13355#2 ------------------------------------------------------------ consensus_13355#0 GTATCCTCCAGGAACTGTATATGCACATCCCTCTACTCCTGGTGTGCATCCATTTAATCA 660 consensus_13355#1 --------------------------------------------------CGCGTAGGCG 10 consensus_13355#2 ------------------------------------------------------------ consensus_13355#0 CTACCCTATGCTGGCAAATGGAAATGTTGAAACTGCTGGAACTGCACCAGGTGCTTCAGA 720 consensus_13355#1 CGGTTTTA--CAACCAAGCGGGGCNCTAAATATGCCCCTTCCCACAGGGATAACGCGGAG 68 consensus_13355#2 ----------------CGCCGGAGGCGGACTCGCCGGCGTCGGACGCTGCCTGCGCCGAG 44 * * * consensus_13355#0 AATTAACGGGAAAAATGAGCTTGGCAGAACATCTGGTCCATCTGCCAACGGGATTACCTC 780 consensus_13355#1 AGGCAACCCCCCAAGTA---TTGGCCGCCC-CCTAGTAAATTTTTTGTT----TTTTTTC 120 consensus_13355#2 -GGCGCTGCTGCATTTG--TTTGCCTGTGGCTCGGGGGAAGAGCGAGCG----GCCGTGT 97 * * *** * * * * * consensus_13355#0 CCACAGTGAGAGTGGAAGTG-AGAGTGAAAGTGAAGGAAGTGATGCCAACTCTCAAAATG 839 consensus_13355#1 AAGCTATTGGCCTTTTAGCGGAGAAATCTTCCCTAAAAAGCGATAACCGTGTATGTGCTA 180 consensus_13355#2 GGGC--TTGCTCTGCTCGAG-GGCCGCGTTCGCGTGGTTTCTCTCCTCGTGTGGGTTGCT 154 * * * * * * * consensus_13355#0 ATTCACATTCAAAGGAAAATGATGTAAAGGAAGATGGTAGTTCTCAGAATGGCATATCAC 899 consensus_13355#1 AGATTCACTCAAGGGAAATTGGT----AAGGAAATGG-AGTT-TCAGAAGGCAATCTCA- 233 consensus_13355#2 AGATTAAGGTTGGTGAA--TGGT----GAGGGGTTG--AATTGTGTGGCCTCGTCGTGCT 206 * * *** ** * * ** * ** * * * consensus_13355#0 ATACAGCATT-AAATCAGAACATGTCGATGGCTCCAACTCAAACGGGTGTAGTAATCGGG 958 consensus_13355#1 --ACAGCCTT-ATCTCA-ACCATGT--AAGGGTCCA-CTCA--CGGGGGTAGTATC--GG 282 consensus_13355#2 CGATTGCTTTTGCATTGTGCTTTGC--GTGGATTCTGATTT--CTCCTCCAATTT----- 257 * ** ** * ** ** * * * * * * consensus_13355#0 GGAGTTGCTCCCACAACAAACTTGAACATAGGAATGGACTACTGGGGTGCTGCTGGTTCT 1018 consensus_13355#1 GGAGTTGCTCC-ACA-CAACTTGACACATAGNANTGGACTCTGGGGGTGCTGCTGGT-CT 339 consensus_13355#2 -AAGCTAGTTTGACATGTATCCGATAT-TGACGAGGGGTAGATAGAATTCGGTGAATTGT 315 ** * * *** * * * ** * * * * * * consensus_13355#0 TCGCCTGTTCCTGCAATGCATGGCAAAGCATCGTCTGGTTCAGTTCGAGGAGAGCAATGG 1078 consensus_13355#1 TCGCCTGTTCNTGCAATGCATGGCAAAGCATCGTCTGGTTCAGTTCGAGGAGAGCAATGG 399 consensus_13355#2 AGATTTGGTTT---GGTGCATCATAATGCATTTGGTGTTTT--TTCAA-------ATTTA 363 ** * ***** ** **** ** ** *** * * * consensus_13355#0 GATGAAAGAGAGCTCAAGAAGCAGAAAAGGAAGCAGTCTAATCGGGAATCAGCACGTAGA 1138 consensus_13355#1 GATGAAAGAGAGCTCAAGAAGCAGANAAGGAAGCAGTCTAATCGGGAATCAGCACGAGAT 459 consensus_13355#2 GTGGGAATTTAGATTAGTGTCCAGCTGAGGAAATA-CGGGATCGAGA--CAGT--GAGAT 418 * * ** ** * * *** ***** * **** ** *** * consensus_13355#0 TCCCGGCTGCGCAAGCAGGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGG 1198 consensus_13355#1 TCCGGGTTGCGCAAGCAGGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGG 519 consensus_13355#2 TTGTCATTGCAAAATCTATC---ATGTTTTTCCCCTTCTTT----GCTGTTCATACCAGG 471 * *** ** * * *** * **** * **** ** *** consensus_13355#0 GCAGAAAACTCCTCTCTTAGGGCTGAGCTTGAACGGATCAAAAAGGAGTACGAGGCACTT 1258 consensus_13355#1 GCAGAAAACTC-TCTCTTAGGGCTGAGCTTGAACGGATCAAAAGGAAGTACGAGGCACTT 578 consensus_13355#2 ATTGTTTATTTCACCCAGCAGG-TGGCCTTTTTGCTATCACAATTTATCAATATCCGGGT 530 * * * * * ** ** *** **** ** * * * * * consensus_13355#0 CTTTCACACAATGCTTCACTCAAGGAAAAACTAGAGGGGAACAGTGATTCAATACCTTAT 1318 consensus_13355#1 CTNTCACACAATGCTTCACTCAAGGAAAAACTAGAGGGGAACAGTGATTCAATACCTTAT 638 consensus_13355#2 -TACAATGGAATGAGTG--TGCGAGTTTGGTTGCCGGGAAGCATTG--TTGACGAATCAG 585 * * **** * * * * *** * ** ** * * * * consensus_13355#0 ATGAATGAACAGAACGACACCAATGGCAC-CCACCAGAAGCAACAGGATTCTGATGCTCA 1377 consensus_13355#1 ATGAATGAACAGAACGACACCAATGGCAC-CCACCAGAAGCAACAGGATTCTGATGCTCA 697 consensus_13355#2 ATGGGTACT---AATGATCC---TGGCACGCCGTCCAAGGCAACAAAGGCATCAGAACCG 639 *** * ** ** * ****** ** * * ****** * * * consensus_13355#0 GCCTAATGATGCGCCTTGAGAGTTATCATCACGTGTAGTAGCATCTAATTGTTTAGCTCA 1437 consensus_13355#1 GCNTAATGATGCGCCTTGAGAGTTATCATCACGTGTAGTAGCATCTAATTGTTTAGCTCA 757 consensus_13355#2 GAGCAGTCTCCAGCCACTACATCTGGCACTAC----AGCTCCAGTTTACCCTGAATGGCC 695 * * * *** * * * ** ** ** ** * * * * * consensus_13355#0 TGATTCTAGTAGGACATCACCATTTGTGTTAGATGAATTTACTAAGCATCTTTCTGTGCC 1497 consensus_13355#1 TGATTCTAGTAGGACATCACCATTTGTGTTAGATGAATTTACTAAGCATCTTTCTGTGCA 817 consensus_13355#2 TGGTTTTCAGGCCTACTCGGCAATTCCACCGCATGGGTTCTTTCCCCTCCTGTTGCTGCA 755 ** ** * ** ** ** *** ** * * ** * *** consensus_13355#0 AATTCGATCAGAATCTGACATGGCAAATTGTCGAGACCAAACTGTCTCTTACCTCTATTC 1557 consensus_13355#1 AATT-GATCAGAATCTGACATGGCAAATTGTCGAGACCAAACTGTCTC------------ 864 consensus_13355#2 AGTC--CCCAGGCTCATCC----------------------------------------- 772 * * *** ** * consensus_13355#0 CAGTTGCTTGCAGCTCCATTGATAAAAAAAAAAAAAAAAAAGGGAA 1603 consensus_13355#1 ---------------------------------------------- consensus_13355#2 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||