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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13375#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 819 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTTTTAATATTTACTCTTTTATAATTATAGGCTCATATTTGCAAAATGTATTGCAAACAAACTGGAAAAGGTACAGAGGT----AAAAAAAAAAAAGGATGCTGCATTAGCTAAGATTTAGTACATTCAAACCGTACAATTGAAGAGGAAATTAAGGCCGACAACTCATATAGTTTGTGCTTTGCGGACCAAAAAAACAATAACTCAAAACATGGAAACTTTGCATCTGAATGGCTATGAACTCCATTGTTTCACTCACAGAATTCCGTCAATCTCCCAGTTATCC-TTTTCA-TCGT-CACGAG-CCCT-CCTCGC-GGCCTCTGAATC-AGCATCGTC-TTCTGGGAACCTAGGCTCCTCCATCATACGCCTGCGGCGGTTGCGGCGGCCGGCCTCGCGGGCCTTGCGCTTGCGCTCGTCCTTCTTGCTCTCGTAGCGGCGGCGGCGCTTGATCTCCTGGAGCACGCCGGCCCTCATCACCTCCCGCCGGAACCGCCGGAAGATGGACTCCTCCCCCTCGTTCTCGTCCACCACGATCTGCACATTGTACCCCTTGGTCGCCGCGACCGCCGCCGTCGGCGAGCGCGGGGGCGCCACGTGGACCACCGACGGCGGCGGCGGCGACCTCCTCCCGGAGAACGGGGCCAGGGGAAGCTGCAGCAGCGCGCTCAGCAGTGACGTGGTGGCTGGAGCGGCAGCCATGGCCGTGGCCTTCGATTGGTTTAGCTTAGCTTCCTCGCTCGATTTCTGGGAATGGAAAAATTGGATGAGAGGCTGAGGAGGAAGAAGCGGAGGAGGGATGGATA]
[-] EMBL AU161887 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACTCTTTTATAATTATAGGCTCATATTTGCAAAATGTATTGCAAACAAACTGGAAAAGGTACAGAGGT AAAAAAAAAAAAGGNTGCTGCATTAGCNAAGATTTAGTACATTCAAACCGTACAATTGAAGAGGAAATTAAGGCCGACAACTCATATAGTTTGTGCTTTGCGGACCAAAAAAACAATAA ]
[+] EMBL CB669190 [ tccTTTTTTTTGTATAATATTTACTCTTTTATAATTATAGGCTCATATTTGCAAAATGTATTGCAAACAAACTGGAAAAGGTACAGAGGTAAAAAAAAAAAAAAAAGGATGCTGCATTAGCTAAGATTTAGTACATTCAAACCGTACAATTGAAGAGGAAATTAAGGCCGACAACTCATATAGTTTGTGCTTTGCGGACCAAAAAAACAATAACTCAAAACATGGAAACTTTGCATCTGAATGGCTATGAACTCCATTGTTTCACTCACAGAATTCCGTCAATCTCCCAGTTATCC TTTTCA TCGT CACGAG CCCT CCTCGC GGCCTCTGAATC AGCATCGTC TTCTGGGAACCTAGGCTCCTCCATCATACGCCTGCGGCGGTTGCGGCGGCCGGCCTCGCGGGCCTTGCGCTTGCGCTCGTCCTTCTTGCTCTCGTAGCGGCGGCGGCGCTTGATCTCCTGGAGCACGCCGGCCCTCATCACCTCCCGCCGGAACCGCCGGAAGATGGACTCCTCCCCCTCGTTCTCGTCCACCACGATCTGCACATTGTACCCCTTGGTCGCCGCGACCGCCGCCGTCGGCGAGCGCGGGGGCGCCACGTGGACCACCGACGGCGGCGGCGGCGACCTCCTCCCGGAGAACGGGGCCAGGGGAAGCTGCAGCAGCGCGCTCAGCAGTGACGTGGTGGCTGGAGCGGCAGCCATGGCCGTGGCCTTCGATTGGTTTAGCTTAGCTTCCTCGCTCGAT ]
[-] EMBL CF325730 [ TTTTTTTTTAATATTTACTCTTTTATAATTATAGGCTCATATTTGCAAAATGTATTGCAAACAAACTGGAAAAGGTACAGAGGT AAAAAAAAAAAAGGATGCTGCATTAGCTAAGATTTAGTACATTCAAACCGTACAATTGAAGAGGAAATTAAGGCCGACAACTCATATAGTTTGTGCTTTGCGGACCAAAAAAACAATAACTCAAAACATGGAAACTTTGCATCTGAATGGCTATGAACTCCATTGTTTCACTCACAGAATTCCGTCAATCTCCCAGTTATCC TTTTCA TCGT CACGAG CCCT CCTCGC GGCCTCTGAATC AGCATCGTC TTCTGGGAACCTAGGCTCCTCCATCATACGCCTGCGGCGGTTGCGGCGGCCGGCCTCGCGGGCCTTGCGCTTGCGCTCGTCCTTCTTGCTCTCGTAGCGGCGGCGGCGCTTGATCTCCTGGAGCACGCCGGCCCTCATCACCTCCCGCCGGAACCGCCGGAAGATGGACTCCTCCCCCTCGTTCTCGTCCACCACGATCTGCA ]
[+] EMBL CB678009 [ AAAAAAAAAAAAGGATGCTGCATTACCTAAAATTTCTTACATTCAAACCGTACAATTGAAAAGGAAATTAGGGCCGACAACTCATATAGTTTGTGCTTTGCGGACCAAAAAAACAATAACTCAAAACATGGAAACTTTGCTTCTGAATGGCTATGAACTCCATTGTTTCACTCACAAAATTCCGTCAATCTCCCAGTTATCC TTTTCA TCGT CACAAG CCCT CCTCGC GGCCTCTGAATC AGCATCTTC TTCTGGGAACCTAGGCTCCTCCATCATACCCCTGCGGCGGTTGCGGCGGCCGGCCTCCCGGGCCTTGCGCTTGCGCTCGTCCTTCTTGCTCTCGTACCGGCGGCGGCGCTTGATCTCCTGAAGCACGCCGGCCCTCATCACCTCCCGCCGGAACCGCCGGAAAATGGACTCCTCCCCCTCGTTCTCGTCCACCACAATCTGCACATTGTACCCCTTGGTCGCCGCAACCGCCGCCGTCGGCAAGCGCGGGGGCCCCACTTGGACCACCGACGGGGGCGGCGGCAACCTCCTCCCGGAAAA ]
[+] EMBL CB627546 [ AAAAAAAAGGATGCTGCATTAGCTAAGATTTAGCACTTTCAAACCGTACAATTGAAGAGGAAATTAAGGCCGACAACTCATATAGTTTGTGCTTTGCGGACCAAAAAAACAATAACTCAAAACATGGAAACTTTGCATCTGAATGGCTATGAACTCCATTGTTTCACTCACAGAATTCCGTCAATCTCCCAGTTATCC TTTTCA TCGT CACGAG CCCT CCTCGC GGCCTCTGAATC AGCATCGTC TTCTGGGAACCTAGGCTCCTCCATCATACGCCTGCGGCGGTTGCGGCGGCCGGCCTCGCGGGCCTTGCGCTTGCGCTCGTCCTTCTTGCTCTCGTAGCGGCGGCGGCGCTTGATCTCCTGGAGCACGCCGGCCCTCATCACCTCCCGCCGGAACCGCCGGAAGATGGACTCCTCCCCCTCGTTCTCGTCCACCACGATCTGCACATTGTACCCCTTGGTCGCCGCGACCGCCGCCGTCGGCGAGCGCGGGGGCGCCACGTGGACCACCGACGGCGGCGGCGGCGACCTCCTCCCGGAGAACGGGGCCAGGGGAAGCTGCAGCAGCGCGCTCAGCAGTGACGTGGTGGCTGGAGCGGCAGCCATGGCCGTGGCCTTCGATTGGTTTAGCTTAGCTTCCTCGCTCGATTTCTGGGAATGGAA ]
[-] EMBL BE230690 [ GGATGCTGCATTAGCTAAGATTTAGTACATTCAAACCGTACAATTGAAGAGGAAATTAAGGCCGACAACTCATATAGTTTGTGCTTTGCGGACCAAAAAAACAATAACTCAAAACATGGAAACTTTGCATCTGAATGGCTATGAACTCCATTGTTTCACTCACAGAATTCCGTCAATCTCCCAGTTATCCTTTTTCATTCGTCCACGAGCCCCTCCCTCGCGGGCTTCTGAATCAAGCATCGTCTTTCTGGGAACCTAGGCTCCTCCATCATACGCCTGCGGCGGTTGCGGCGGCCGGCCTCGCGGGCCTTGCGCTTGCGCggcacg ]
[-] EMBL BE230517 [ GGATGCTGCATTAGCTAAGATTTAGTACATTCAAACCGTACAATTGAAGAGGAAATTAAGGCCGACAACTCATATAGTTTGTGCTTTGCGGACCAAAAAAACAATAACTCAAAACATGGAAACTTTGCATCTGAATGGCTATGAACTCCATTGTTTCACTCACAGAATTCCGTCAATCTCCCAGTTATCC TTTTCA TCGT CACGAG CCCT CCTCGC GGCCTCTGAATC AGCATCGTC TTCTGGGAACCTAGGCTCCTCCATCATACGCCTGCGGCGGTTGCGGCGGCCGGCCTCGCGGGCCTTGCGCTTGCGCggcacg ]
[-] EMBL AK120425 [ GATGCTGCATTAGCTAAGATTTAGTACATTCAAACCGTACAATTGAAGAGGAAATTAAGGCCGACAACTCATATAGTTTGTGCTTTGCGGACCAAAAAAACAATAACTCAAAACATGGAAACTTTGCATCTGAATGGCTATGAACTCCATTGTTTCACTCACAGAATTCCGTCAATCTCCCAGTTATCC TTTTCA TCGT CACGAG CCCT CCTCGC GGCCTCTGAATC AGCATCGTC TTCTGGGAACCTAGGCTCCTCCATCATACGCCTGCGGCGGTTGCGGCGGCCGGCCTCGCGGGCCTTGCGCTTGCGCTCGTCCTTCTTGCTCTCGTAGCGGCGGCGGCGCTTGATCTCCTGGAGCACGCCGGCCCTCATCACCTCCCGCCGGAACCGCCGGAAGATGGACTCCTCCCCCTCGTTCTCGTCCACCACGATCTGCACATTGTACCCCTTGGTCGCCGCGACCGCCGCCGTCGGCGAGCGCGGGGGCGCCACGTGGACCACCGACGGCGGCGGCGGCGACCTCCTCCCGGAGAACGGGGCCAGGGGAAGCTGCAGCAGCGCGCTCAGCAGTGACGTGGTGGCTGGAGCGGCAGCCATGGCCGTGGCCTTCGATTGGTTTAGCTTAGCTTCCTCGCTCGATTTCTGGGAATGGAAAAATTGGATGAGAGGCTGAGGAGGAAGAAGCGGAGGAGGGATGGATA]
[+] EMBL CB685033 [ aagcctttTGAATTATCTAAAATTTAAAACTTTCAAACCGAACAATTGAAAAGGAAATTAAGGCCGACAACTCATCTAGTTTGGGCTTTGCGGACCAAAAAAACAATAACTCAAAACATGGAAACTTTGCATCTGAATGGCTATGAACTCCATTGTTTCACTCACAAAATTCCGTCAATCTCCCAGTTATCC TTTTCA TCGT CACGAG CCCT CCTCGC GGCCTCTGAATC AACATCGTC TTCTGGGAACCTAGGCTCCTCCATCATACGCCTGCGGGGGTTGCGGCGGCCGGCCTCGCGGGCCTTGCGCTTGCGCTCGTCCTTCTTGCTCTCGTAACGGCGGCGGCGCTTGATCTCCTGGAACACGCCGGCCCTCATCACCTCCCGCCGGAACCGCCGGAAAATGGACTCCTCCCCCTCGTTCTCGTCCACCACGATCTGCACATTGTACCCC ]
[-] EMBL AU161886 [ ACAACGATNTGCACATTGTACCCCTTGNTCGCCGCGACCGCC CCGTCNGCGAGCGCGGGGGCGCCACGTGGACCACCGACGGCGGCGGCGGCGACCTCCTCCCGGAGAACGGGGCCAGGGGAAGCTGCAGCAGCGCGCTCAGCAGTGACGTGGTGGCTGGAGCGGCAGCCATGGCCGTGGCCTTCGATTGGTTTAGCTTAGCTTCCTCGCTCGATTTCTGGGAATGGAAAAATTGGATGAGAGGCTGAGGAGGAAGAAGCGGA ]
[-] EMBL CB627545 [ AGAACGGGGCCAGGGGAAGCTGCAGCAGCGCGCTCAGCAGTGACGTGGTGGCTGGAGCGGCAGCCATGGCCGTGGCCTTCGATTGGTTTAGCTTAGCTTCCTCGCTCGATTTCTGGGAATGGAAAAATTGGATGAGAGGCTGAGGAGGAAGAAGC ]
consensusID : consensus_13375#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 376 fasta sequence
[TTTTTTTTTTGGTATAATATTTACTCTTTTATAATTATAGGCTCATATTTGCAAAATGTATTGAAACAAACTGGAAAAGGTACAGAGGTAAAAAAAAAAAAAAGGATGTGATTAGCTAAGATTTAGTACATTCAAACCGTACACATGTGAAGAGGAAATTAAGGCGACAACTCATATAGTTGGGGCTTGGCGGGACCAAAACAAACAATAACTCAAAACAGTGGAAACTTGGCATCTGACAGGGCTATGAACTCCATGGTTTCACTCACAGCAATTCCGTCAATCTCCCAGTTATCCTTTTCATCGTACATGAGCACCATCCTCGGGGCTCGTGAATCAGACATCGTCTTCGGGGAACCTAGGTCCTCCATACATA]
[-] EMBL BI813213 [TTTTTTTTTTGGTATAATATTTACTCTTTTATAATTATAGGCTCATATTTGCAAAATGTATTGAAACAAACTGGAAAAGGTACAGAGGTAAAAAAAAAAAAAAGGATGTGATTAGCTAAGATTTAGTACATTCAAACCGTACACATGTGAAGAGGAAATTAAGGCGACAACTCATATAGTTGGGGCTTGGCGGGACCAAAACAAACAATAACTCAAAACAGTGGAAACTTGGCATCTGACAGGGCTATGAACTCCATGGTTTCACTCACAGCAATTCCGTCAATCTCCCAGTTATCCTTTTCATCGTACATGAGCACCATCCTCGGGGCTCGTGAATCAGACATCGTCTTCGGGGAACCTAGGTCCTCCATACATA]
consensusID : consensus_13375#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 182 fasta sequence
[CNTNTNANAGCCCCGTCNNCGAGNNNGGGGGCGCCACGTGGACCACCGACGNCNNCNNCGGCNACNTCCTCCCGGAGAACGGGGCCAGGGGAAGCTGCAGCAGCGCGCTCAGCAGTGACGTGGTGGCTGGAGCGGCAGCCATGGCCGTGGCCTTCGATTGGTTTAGCTTAGCTTCCTCGCTC]
[-] EMBL OSS1037A [CNTNTNANAGCCCCGTCNNCGAGNNNGGGGGCGCCACGTGGACCACCGACGNCNNCNNCGGCNACNTCCTCCCGGAGAACGGGGCCAGGGGAAGCTGCAGCAGCGCGCTCAGCAGTGACGTGGTGGCTGGAGCGGCAGCCATGGCCGTGGCCTTCGATTGGTTTAGCTTAGCTTCCTCGCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13375#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTAATATTTACTCTTTTATAATTATAGGCTCATA 60
consensus_13375#1 -------------TTTTTTTTTTGGTATAATATTTACTCTTTTATAATTATAGGCTCATA 47
consensus_13375#2 ------------------------------------------------------------
consensus_13375#0 TTTGCAAAATGTATTGCAAACAAACTGGAAAAGGTACAGAGGTAAAAAAAAAAAAGGATG 120
consensus_13375#1 TTTGCAAAATGTATTG-AAACAAACTGGAAAAGGTACAGAGGTAAAAAAAAAAAAAAGGA 106
consensus_13375#2 ------------------------------------------------------------
consensus_13375#0 CTGCATTAGCTAAGATTTAGTACATTCAAACCGTACA-AT-TGAAGAGGAAATTAAGGCC 178
consensus_13375#1 TGTGATTAGCTAAGATTTAGTACATTCAAACCGTACACATGTGAAGAGGAAATTAAGGC- 165
consensus_13375#2 --------------------CNTNTNANAGCCCCGTCNNCGAGNNNGGGGGCGCCACGTG 40
* * ** * ** * *
consensus_13375#0 GACAACTCATATAGTTTGTGCTTTGCGG-ACCAAAA-AAACAATAACTCAAAACA-TGGA 235
consensus_13375#1 GACAACTCATATAGTTGGGGCTTGGCGGGACCAAAACAAACAATAACTCAAAACAGTGGA 225
consensus_13375#2 GACCACCGACGNCNNC----NNCGGCNACNTCCTCCCGGAGAACGGGGC----CAGGGGA 92
*** ** * ** * * ** * ** ***
consensus_13375#0 AACT-TTGCATCTGA-ATGGCTATGAACTCCATTGTTTCACTCACAG-AATTCCGTCAAT 292
consensus_13375#1 AACT-TGGCATCTGACAGGGCTATGAACTCCATGGTTTCACTCACAGCAATTCCGTCAAT 284
consensus_13375#2 AGCTGCAGCAGCGCGCTCAGCAGTGA-CGTGGTGGCTGGAGCGGCAGCCATGGCCGTGGC 151
* ** *** * ** *** * * * * * *** ** *
consensus_13375#0 CTCCCAGTTATCCTTTTCATCGT-CACGAGCCC--TCCTCGCGGCCTCTGAATCAG-CAT 348
consensus_13375#1 CTCCCAGTTATCCTTTTCATCGTACATGAGCACCATCCTCGGGGCTCGTGAATCAGACAT 344
consensus_13375#2 CTTCGATTGGTTTAGCTTAGCTTCCTCGCTC----------------------------- 182
** * * * * * * * * * * *
consensus_13375#0 CGTCTTCTGGGAACCTAGGCTCCTCCAT-CATACGCCTGCGGCGGTTGCGGCGGCCGGCC 407
consensus_13375#1 CGTCTTCGGGGAACCTAGG-TCCTCCATACATA--------------------------- 376
consensus_13375#2 ------------------------------------------------------------
consensus_13375#0 TCGCGGGCCTTGCGCTTGCGCTCGTCCTTCTTGCTCTCGTAGCGGCGGCGGCGCTTGATC 467
consensus_13375#1 ------------------------------------------------------------
consensus_13375#2 ------------------------------------------------------------
consensus_13375#0 TCCTGGAGCACGCCGGCCCTCATCACCTCCCGCCGGAACCGCCGGAAGATGGACTCCTCC 527
consensus_13375#1 ------------------------------------------------------------
consensus_13375#2 ------------------------------------------------------------
consensus_13375#0 CCCTCGTTCTCGTCCACCACGATCTGCACATTGTACCCCTTGGTCGCCGCGACCGCCGCC 587
consensus_13375#1 ------------------------------------------------------------
consensus_13375#2 ------------------------------------------------------------
consensus_13375#0 GTCGGCGAGCGCGGGGGCGCCACGTGGACCACCGACGGCGGCGGCGGCGACCTCCTCCCG 647
consensus_13375#1 ------------------------------------------------------------
consensus_13375#2 ------------------------------------------------------------
consensus_13375#0 GAGAACGGGGCCAGGGGAAGCTGCAGCAGCGCGCTCAGCAGTGACGTGGTGGCTGGAGCG 707
consensus_13375#1 ------------------------------------------------------------
consensus_13375#2 ------------------------------------------------------------
consensus_13375#0 GCAGCCATGGCCGTGGCCTTCGATTGGTTTAGCTTAGCTTCCTCGCTCGATTTCTGGGAA 767
consensus_13375#1 ------------------------------------------------------------
consensus_13375#2 ------------------------------------------------------------
consensus_13375#0 TGGAAAAATTGGATGAGAGGCTGAGGAGGAAGAAGCGGAGGAGGGATGGATA 819
consensus_13375#1 ----------------------------------------------------
consensus_13375#2 ----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||