These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13382#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 884 fasta sequence [CCTCTTCTTCTCGATCACAGTAGCTGCCTGCCCCCCATAGCGAGAGAAAAGGGAGCTCCCAGCTTGAGCTCCGGCGAGGTACGGAGCAAGAGCGGGGGACGATGGTTGGAATCTTCTCCAGGTTCTCCGCCGGCGCACACCGCCGCGCCAAGAGCGCCGTCGAGGTTGTGGAGACGTTGGCACCCAACATGAACAGCGGAGAGCCTGATTCACAAGCTGTTCCTGCAGATAGTCCGCATGGCATTGAGGTCGGCGTCGAGTTCAAGCCGGTGGAGCACCCAGTGGAGCCTGTCAACCTTGATCAACCTGTGAAATGTCCACTTCCTGAACCATCTATAC-TTCATGATGGGAGGATAT-GGAAAGAAAGGATCGCTACAGC-GGGTGTGA-GGGTGATGACAGA-CC-TGCCAGTCGTGAAGGAAGGATCG-CAGCTTGAGTCCGACAGCAGCGGAGCAAGGTCGCGATCCGCAGTACCGAAGCGCGCCATATTACCCTCTGTAAGTGCCCCTGAGAATAACATCCTAGCTCTGCTT-GATGAATGTGACGTGCCTGAGAGCCTGCGTCCTGCCGAATGAGCTTCAGTAAATTAGATGTTGCTAGTACAACTCTATTTTGCCTCATGTTGTTGT-GCTTGTGCATTACTGCTT-AC-AT-GTATT-ACTCCACTTCGTCAAATGCCACGAGATGAATACAGCAATGTTAGGTCTGAATTTGGAACTGTAACAACAGATGTTGGTGTGAAATGTTTCTACAAATACGGGTAAAGGCAATGTGTACTACATCCGTCGCATTTGTTGAATACAATAAATTTATCACAGAATCACTGATATGCTGGATTTGGTT-----TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF305204 [CCTCTTCTTCTCGATCATAGTAGCTGCCTGCCCCCCATAGCGAGAGAAAAGGGAGCTCCCAGCTTGAGCTCCGGCGAGGTACGGAGCAAGAGCGGGGGACGATGGTTGGAATCTTCTCCAGGTTCTCCGCCGGCGCACACCGCCGCGCCAAGAGCGCCGTCGAGGTTGTGGAGACGTTGGCACCCAACATGAACAGCGGAGAGCCTGATTCACAAGCTGTTCCTGCAGATAGTCCGCATGGCATTGAGGTCGGCGTCGAGTTCAAGCCGGTGGAGCACCCAGTGGAGCCTGTCAACCTTGATCAACCTGTGAAATGTCCACTTCCTGAACCATCTATAC TTCATGATGGGAGGATAT GGAAAGAAAGGATCGCTACAGC GGGTGTGA GGGTGATGACAGA CC TGCCAGTCGTGAAGGAAGGAACG CAGCTTGAGTCCGACAGCAGCGGAGCAAGGTCGCGATCCGCAGTACCGAAGCGCGCC ] [+] EMBL CF316306 [CCTCTTCTTCTCGATCTCAGTAGCTGCCTGCCCCCCATAGCGAGAGAAAAGGGAGCTCCCAGCTTGAGCTCCGGCGAGGTACGGAGCAAGAGCGGGGGACGATGGTTGGAATCTTCTCCAGGTTCTCCGCCGGCGCACACCGCCGCGCCAAGAGCGCCGTCGAGGTTGTGGAGACGTTGGCACCCAACATGAACAGCGGAGAGCCTGATTCACAAGCTGTTCCTGCAGATAGTCCGCATGGCATTGAGGTCGGCGTCGAGTTCAAGCCGGTGGAGCACCCAGTGGAGCCTGTCAACCTTGATCAACCTGTGAAATGTCCACTTCCTGAACCATCTATAC TTCATGATGGGAGGATAT GGAAAGAAAGGATCGCTACAGC GGGTGTGAGGGGTGATGACAGA CC TGCCAGTCGTGAAGGAAGGATCG CAGCTTGAGTCCGACAGCAGCGGAGCAAGGTCGCGATCCGCAGTACCGAAGCGCGCCATATTACCCTCTGTAAGTGCCCCTGAGAATAACATCCTAGCTCTGCTT GATGAATGTGACGTGCCTGAGAGCCTGCGTCCTGCCGAATGAGCTTCAGTAAATTAGATGTTGCTAGTACAACTCTAT ] [+] EMBL CB674183 [ CAGTAGCTGCCTGCCCCCCATAGCGAGAGAAAAGGGAGCTCCCAGCTTGAGCTCCGGCGAGGTACGGAGCAAGAGCGGGGGACGATGGTTGGAATCTTCTCCAGGTTCTCCGCCGGCGCACACCGCCGCGCCAAGAGCGCCGTCGAGGTTGTGGAGACGTTGGCACCCAACATGAACAGCGGAGAGCCTGATTCACAAGCTGTTCCTGCAGATAGTCCGCATGGCATTGAGGTCGGCGTCGAGTTCAAGCCGGTGGAGCACCCAGTGGAGCCTGTCAACCTTGATCAACCTGTGAAATGTCCACTTCCTGAACCATCTATAC TTCATGATGGGAGGATAT GGAAAGAAAGGATCGCTACAGC GGGTGTGA GGGTGATGACAGA CC TGCCAGTCGTGAAGGAAGGATCG CAGCTTGAGTCCGACAGCAGCGGAGCAAGGTCGCGATCCGCAGTACCGAAGCGCGCCATATTACCCTCTGTAAGTGCCCCTGAGAATAACATCCTAGCTCTGCTT GATGAATGTGACGTGCCTGAGAGCCTGCGTCCTGCCGAATGAGCTTCAGTAAATTAGATGTTGCTAGTACAACTCTATTTTGCCTCATGTTGTTGT GCTTGTGCATTACTGCTT AC AT GTATT ACTCCACTTCGTCAAATGCCACGAGATGAATACAGCAATGTTAGGTCTGAATTTGGAACTGTAACAACAGATGTTGGTGTGAAATGTTTCTACAAATACGGGTAAAGGCAATGTGTACTACATCCGTCGC ] [+] EMBL C28289 [ CAGTAGCTGCCTGCCCCCCATAGCGAGAGAAAAGGGAGCTCCCAGCTTGAGCTCCGGCGAGGTACGGAGCAAGAGCGGGGGACGATGGTTGGAATCTTCTCCAGGTTCTCCGCCGGCGCACACCGCCGCGCCAAGAGCGCCGTCGAGGTTGTGGAGACGTTGGCACCCAACATGAACAGCGGAGAGCCTGATTCACAAGCTGTTCCTGCAGATAGTCCGCATGGCATTGAGGTCGGCGTCGAGTTCAAGCCGGTGGAGCACCCAGTGGAGCCTGTCAACCTTGATCAACCTGTGAAATGTCCACTTCCTGAACCATCTATACTTTCATGATGGGAGGATATGGGAAAGAAAGGATCGCTACAGCGGGGTGTTA GGGTTATGACAGA CCTTTCCAGTCGTNAAGGA ] [+] EMBL AK120209 [ CCTGCCCCCCATAGCGAGAGAAAAGGGAGCTCCCAGCTTGAGCTCCGGCGAGGTACGGAGCAAGAGCGGGGGACGATGGTTGGAATCTTCTCCAGGTTCTCCGCCGGCGCACACCGCCGCGCCAAGAGCGCCGTCGAGGTTGTGGAGACGTTGGCACCCAACATGAACAGCGGAGAGCCTGATTCACAAGCTGTTCCTGCAGATAGTCCGCATGGCATTGAGGTCGGCGTCGAGTTCAAGCCGGTGGAGCACCCAGTGGAGCCTGTCAACCTTGATCAACCTGTGAAATGTCCACTTCCTGAACCATCTATAC TTCATGATGGGAGGATAT GGAAAGAAAGGATCGCTACAGC GGGTGTGA GGGTGATGACAGA CC TGCCAGTCGTGAAGGAAGGATCG CAGCTTGAGTCCGACAGCAGCGGAGCAAGGTCGCGATCCGCAGTACCGAAGCGCGCCATATTACCCTCTGTAAGTGCCCCTGAGAATAACATCCTAGCTCTGCTT GATGAATGTGACGTGCCTGAGAGCCTGCGTCCTGCCGAATGAGCTTCAGTAAATTAGATGTTGCTAGTACAACTCTATTTTGCCTCATGTTGTTGT GCTTGTGCATTACTGCTT AC AT GTATT ACTCCACTTCGTCAAATGCCACGAGATGAATACAGCAATGTTAGGTCTGAATTTGGAACTGTAACAACAGATGTTGGTGTGAAATGTTTCTACAAATACGGGTAAAGGC ] [+] EMBL AU174433 [ TCCCAGCTTGAGCTCCGGCGAGGTACGGAGCAAGAGCGGGGGACGATGGTTGGAATCTTCTCCAGGTTCTCCGCCGGCGCACACCGCCGCGCCAAGAGCGCCGTCGAGGTTGTGGAGACGTTGGCACCCAACATGAACAGCGGAGAGCCTGATTCACAAGCTGTTCCTGCAGATAGTCCGCATGGCATTGAGGTCGGCGTCGAGTTCAAGCCGGTGGAGCACCCAGTGGAGCCTGTCAACCTTGATCAACCTGTGAAATGTCCACTTCCTGAACCATCTATAC TTCATGATGGGAGGATAT GGAAAGAAAGGNTCGCTACAGC GGGTGTAA GGGTGATGACAGA CC TGCCAGTTGTGAAGGAAGGATCG CAGCTTGAGTCCGA ] [+] EMBL AI978292 [ AGCTCCGGCGAGGTACGGAGCAAGAGCGGGGGACGATGGTTGGAATCTTCTCCAGGTTCTCCGCCGGCGCACACCGCCGCGCCAAGAGCGCCGTCGAGGTTGTGGAGACGTTGGCACCCAACATGAACAGCGGAGAGCCTGATTCACAAGCTGTTCCTGCAGATAGTCCGCATGGCATTGAGGTCGGCGTCGAGTTCAAGCCGGTGGAGCACCCAGTGGAGCCTGTCAACCTTGATCAACCTGTGAAATGTCCACTTCCTGAACCATCTATAC TTCATGATGGGAGGATAT GGAAAGAAAGGATCGCTACAGC GGGTGTGA GGGTGATGACAGA CC TNNNNGTCGTnnnnnn ] [+] EMBL AU082650 [ CTGTTCCTGCAGATAGTCCCCATGGCATTGAGGTCGNCGTCGAGTTCAAGCCGGTGGAGCNCCCAGTGGAGCCTGTCACCCTTGATCAACCTGTGAAATGTCCACTTCCTGAACCATCTATAC TTCATGATGGGAGGATNT GGAAAGAAAGGATCGCTACAGC GGGTNTGA GGGTGATGACAGA CC TGCCAGTCGTGAAGGAAGGATCGCCAGCTTGAGTCCGACAGCAGCGGAGCAAGGTCGCGATCCGCAGTACCGAAGCGCGCCATATTACCCTCTGTAAGTGCCCCTGAGAATAACATCCTAGCTCTGCTT GATGAATGTGACGTGCCTGAGAGCCTGCGTCCTGCCGAATGNGCTTCAGTAAATTAGATGTTGCTAGTACAACTCTATTTTGCCTCATGTTGTTGT GCTTGTGCATTACTGCTT AC AT GTATT ACTCCA TTCGTCAAATGCCNCGAGATGAATACAGCAATGTTAGGTCTGAATTTGGAACTGTAACAACAGATGTTGGTGTGAAATGTTTCTACAAATACGGGTAAAGGCAATGTGTACTACATCCGTCGCATTTGTTGAATACAATAAATTTATCACAGAATCACTGATATGCTGGATTTGGTTTTGTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF316307 [ GGGAGGATAT GGAAAGAAAGGATCGCTACAGC GGGTGTGA GGGTGATGACAGACCC TGCCAGTCGTGAAGGAAGGATCG CAGCTTGAGTCCGACAGCAGCGGAGCAAGGTCGCGATCCGCAGTACCGAAGCGCGCCATATTACCCTCTGTAAGTGCCCCTGAGAATAACATCCTAGCTCTGCTT GATGAATGTGACGTGCCTGAGAGCCTGCGTCCTGCCGAATGAGCTTCAGTAAATTAGATGTTGCTAGTACAACTCTATTTTGCCTCATGTTGTTGT GCTTGTGCATTACTGCTT AC AT GTATT ACTCCACTTCGTCAAGTGCCACGAGATGAATACAGCAATGTTAGGTCTGAATTTGGAACTGTAACAACAGATGTTGGTGTGAAATGTTTCTACAAATACGGGTAAAGGCAATGTGTACTACATCCGTCGCATTTGTTGAATACAATAAATTTATCACAGAAaaaa ] [+] EMBL AU174434 [ GCCAGTCGTGAAGGAAGGATCG CAGCTTGAGTCCGACAGCAGCGGAGCAAGGTCGCGATCCGCAGTACCGAAGCGCGCCATATTACCCTCTGTAAGTGCCCCTGAGAATAACATCCTAGCTCTGCTT GATGAATGTGACGTGCCTGAGAGCCTGCGTCCTGCCGAATGAGCTTCAGTAAATTAGATGTTGCTAGTACAACTCTATTTTGCCTCATGTTGTTGT GCTTGTGCATTACTGCTT ACAAT GTATT ACTCCACTTCGTCAAATGCCACGAGATGAATACAGCAATGTTAGGTCTGAATTTGGAACTGTAACAACAGATGTTGGTGTGAAATGTTTCTACAAATACGGGTAAAGGCAATGTGTACTACATCCGTCGCATTTGTTGAATACAATAAATTTATCACAGAATCACTGATATGCTGGATTTGGTT TAAAAAAAAA ] [+] EMBL AI978293 [ ACATCCTAGCTCTGCNN GATGAATGTGACGTGCNTGAGAGCCTGCGTCCTGCCGAANNAGCTTCAGTAAATTAGATGTTGCTANNACAACTCTATTTTGCCTCATGTTGTTGT GCTTGTGCATTACTGCTT AC AT GCATT ACTCCACTTCGTCAAATGCCANGAGNTGAATACAGCAATGTTAGGTCTGAATTTGGAACTGTAACAACAGNTGTTGGTGTGAAATGTTTCTACAANNNCGGGTAAAGGCAATGTGTACTACATCCGTCGCATTTGTTGAATACAATAAATTTATCACAGAATCACTGATATGCTGGATTTG ] [+] EMBL BI797742 [ GCTTGGATGAATGTGACGGGCCTGAGAGCCTGCGTCCTGCCGAATGAGCTTCAGTAAATTAGATGTTGCTAGTACAACTCTATTTTGCCTCATGTTGTTGTGGCTTGTGCATTACTGCTTGAC ATGGCATTGACTCCACTTCGTCAAATGCCACGAGATGAATACAGCAATGTTAGGTCTGAATTTGGAACTGTAACAACAGATGTTGGTGTGAAATGTTTCTACAAATACGGGTAAAGGCAATGTGTACTACATCCGTCGCATTTGTTGAATACAATAAATTTATCACAGAATCACTaaaaaaa ] consensusID : consensus_13382#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 678 fasta sequence [GAGCCTGATTCACAAGCTGTTCCTGCAGATAGTCCGCATGGCATTGAGGTCGGCGTCGAGTTCAAGCCGGTGGAGCACCCAGTGGAGCCTGTCAACCTTGATCAACCTGTGAAATGTCCACTTCCTGAACCATCTATACTTCATGTAAGCCATTCAGTCGCTGTTTGTGGAAGAATTGTGTTGTTGGTTTGTGTTATGTAATCCACTATAAGGAGCAAGACACACAAGAGAAAATTCATTTCACCTACACACAAGAGAACCATGCATTTTATTCAACTTATGTAGAGGAAAATCCAGTGCTACAATTGCAACAACATGCCTTCTCTTACAGGTTCCCTGTTTCCTCCAGTGTCTACTTACCTAGCTATATTCCCTTACTTGATGCATCGATTGATGGATACTAGGATGGGAGGATATGGAAAGAAAGGATCGCTACAGCGGGTGTGAGGGTGATGACAGACCTGCCAGTCGTGAAGGAAGGATCGCAGCTTGAGTCCGACAGCAGCGGAGCAAGGTCGCGATCCGCAGTACCGAAGCGCGCCATATTACCCTCTGTAAGTGCCCCTGAGAATAACATCCTAGCTCTGCTTGATGAATGTGACGTGCCTGAGAGCCTGCGTCCTGCCGAATGAGCTTCAGTAAATTAGATGTTGCTAGTACAACTCTATTTTGCCTCAT] [+] EMBL CA998918 [GAGCCTGATTCACAAGCTGTTCCTGCAGATAGTCCGCATGGCATTGAGGTCGGCGTCGAGTTCAAGCCGGTGGAGCACCCAGTGGAGCCTGTCAACCTTGATCAACCTGTGAAATGTCCACTTCCTGAACCATCTATACTTCATGTAAGCCATTCAGTCGCTGTTTGTGGAAGAATTGTGTTGTTGGTTTGTGTTATGTAATCCACTATAAGGAGCAAGACACACAAGAGAAAATTCATTTCACCTACACACAAGAGAACCATGCATTTTATTCAACTTATGTAGAGGAAAATCCAGTGCTACAATTGCAACAACATGCCTTCTCTTACAGGTTCCCTGTTTCCTCCAGTGTCTACTTACCTAGCTATATTCCCTTACTTGATGCATCGATTGATGGATACTAGGATGGGAGGATATGGAAAGAAAGGATCGCTACAGCGGGTGTGAGGGTGATGACAGACCTGCCAGTCGTGAAGGAAGGATCGCAGCTTGAGTCCGACAGCAGCGGAGCAAGGTCGCGATCCGCAGTACCGAAGCGCGCCATATTACCCTCTGTAAGTGCCCCTGAGAATAACATCCTAGCTCTGCTTGATGAATGTGACGTGCCTGAGAGCCTGCGTCCTGCCGAATGAGCTTCAGTAAATTAGATGTTGCTAGTACAACTCTATTTTGCCTCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13382#0 -CCTCTTCTTCTCGATCACAGTAGCTGCCTGCCCCCCATAGCGAGAGAAAAGGGAGCTCC 59 consensus_13382#1 GAGCCTGATTCACAA--GCTGTTCCTGCAGATAGTCCGCA-TGGCATTGAGGTCGGCGTC 57 ** *** * * * ** **** ** * * * * * ** * consensus_13382#0 CAGCTTGAGCTCCGGCGAGGTACGGAGCAAGAGCGGGGGACGATGGTTGGAATCTTCTCC 119 consensus_13382#1 GAGTTCAAGC--CGGTGGAGCACCCAGTGGAGCCTGTCAACCTTGATC--AACCTGTGAA 113 ** * *** *** * * ** ** * * ** ** * ** ** consensus_13382#0 AGGTTCTCCGCCGGCGCACACCGCCGCGCCAAGAGCGCCGTCGAGG------TTGTGGAG 173 consensus_13382#1 ATGTCCACTTCCTGAAC-CATCTATACTTCATGTAAGCCATTCAGTCGCTGTTTGTGGAA 172 * ** * * ** * * ** * * ** * *** * ** ******* consensus_13382#0 A--------CGTTGGC------------ACCCAACATGAACAGCGGAGAGCCTGATTCAC 213 consensus_13382#1 GAATTGTGTTGTTGGTTTGTGTTATGTAATCCACTATAAGGAGCAAGACACACAAGAGAA 232 ***** * *** ** * *** * * * consensus_13382#0 AAGCTGTT---CCTGCAGATAG------TCCGCATGGCATTGAGGTCGGCGTCGAGTTCA 264 consensus_13382#1 AATTCATTTCACCTACACACAAGAGAACCATGCATTTTATTCAACTTA-TGTAGAGGAAA 291 ** ** *** ** * * **** *** * * ** *** * consensus_13382#0 AGCCGGTGGAGCACCCAGTGGAGCCTGTCAACCTTGATCAA---CCTGTGA-----AATG 316 consensus_13382#1 ATCCAGTGCTACAATTGCAACAACATGCCTTCTCTTACAGGTTCCCTGTTTCCTCCAGTG 351 * ** *** ** * * ** * * * * ***** * ** consensus_13382#0 TCCACTTCCTGAACCAT----CTATACTTCATG---------------------ATGGGA 351 consensus_13382#1 TCTACTTACCTAGCTATATTCCCTTACTTGATGCATCGATTGATGGATACTAGGATGGGA 411 ** **** * * * ** * ***** *** ****** consensus_13382#0 GGATATGGAAAGAAAGGATCGCTACAGCGGGTGTGAGGGTGATGACAGACCTGCCAGTCG 411 consensus_13382#1 GGATATGGAAAGAAAGGATCGCTACAGCGGGTGTGAGGGTGATGACAGACCTGCCAGTCG 471 ************************************************************ consensus_13382#0 TGAAGGAAGGATCGCAGCTTGAGTCCGACAGCAGCGGAGCAAGGTCGCGATCCGCAGTAC 471 consensus_13382#1 TGAAGGAAGGATCGCAGCTTGAGTCCGACAGCAGCGGAGCAAGGTCGCGATCCGCAGTAC 531 ************************************************************ consensus_13382#0 CGAAGCGCGCCATATTACCCTCTGTAAGTGCCCCTGAGAATAACATCCTAGCTCTGCTTG 531 consensus_13382#1 CGAAGCGCGCCATATTACCCTCTGTAAGTGCCCCTGAGAATAACATCCTAGCTCTGCTTG 591 ************************************************************ consensus_13382#0 ATGAATGTGACGTGCCTGAGAGCCTGCGTCCTGCCGAATGAGCTTCAGTAAATTAGATGT 591 consensus_13382#1 ATGAATGTGACGTGCCTGAGAGCCTGCGTCCTGCCGAATGAGCTTCAGTAAATTAGATGT 651 ************************************************************ consensus_13382#0 TGCTAGTACAACTCTATTTTGCCTCATGTTGTTGTGCTTGTGCATTACTGCTTACATGTA 651 consensus_13382#1 TGCTAGTACAACTCTATTTTGCCTCAT--------------------------------- 678 *************************** consensus_13382#0 TTACTCCACTTCGTCAAATGCCACGAGATGAATACAGCAATGTTAGGTCTGAATTTGGAA 711 consensus_13382#1 ------------------------------------------------------------ consensus_13382#0 CTGTAACAACAGATGTTGGTGTGAAATGTTTCTACAAATACGGGTAAAGGCAATGTGTAC 771 consensus_13382#1 ------------------------------------------------------------ consensus_13382#0 TACATCCGTCGCATTTGTTGAATACAATAAATTTATCACAGAATCACTGATATGCTGGAT 831 consensus_13382#1 ------------------------------------------------------------ consensus_13382#0 TTGGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 884 consensus_13382#1 ----------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||