These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13388#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1379 fasta sequence [TCCACTCTCCTCCGTTTGCCTGATCCGATCCCCTCACCTCCGTCCCTGCTTCCTCCCGGCGACCACCGCCCGCCGCGCGATGGGCGGCGCCGCCGTCTCCAGCCTGCTTGCCACCCCAACACCGACCTCTCGACCTCGACCCGTCTCCACCACCACCGCCCCCTTCTCCGTCAACCTCTCCACCGCAGCTGCCCGCGCACCTCGCCTCCTCCTCCTCTCGCGCCGCCCTCGCCCTCGCCCCGCCGCCGCGGTTCTCGGGGTGTCTGATGATACAGGGGTCAAGATGGCTGGCTCCGACATTGTTGGCAAGAACGATTTGCTGATTGTTGGCCCTGGAGTGCTTGGTCGACTGGTAGCTGAGAAATGGCAGGAGGAACATCCAGGATGCAAAGTTTTTGGCCAGACCGCAAGCACAGATCACCACAACGAATTGTCGAATATTGGCATCATTCCCTCCTTGAAGGGATCCACTTTTCCTCAGAAGGTTCCATATGTTATTTTCTGTGCTCCCCCATCTCGTTCGGATGATTACCCTGGGGATGTGAGAGTAGCTGCCTCAAATTGGACTGGTGAAGGCTCTTTCGTTTTTACATCAAGTACTGCTCTGTACGATTGTAGTGACAACGAATTGTGCAATGAGGATTGCCCATCTGTGCCAATTGGCAGAAGCCCTCGTACTGACGTCCTTCTAAAAGCAGAGAATGTTGTTCTTGAGGCAGGAGGCTGTGTCCTCAGGCTAGCAGGACTCTATAAAATAGATAGAGGTGCTCATTTTTTTTGGTTGAGGAAAGGAACTTTGGACACACGACCAGATCATATTATCAATCAAATTCATTATGAGGATGCTGCTTCCCTTGCAATTGCCATAATGAAAAAGGGACACAGGGGTCGAATCTTTTTGGGCTGTGACAATAAGCCTCTTTCCAGGCAAGAAATAATGGACTCTGTTAACAGAAGTGGAAAATTTGACACGAAGTTCCAAGGTTTTACTGGTACAGATGGTCCACTGGGTAAGAAGATGGAGAATTCGAGAACTCGTTCTGAGATTGGTTGGGAGCCCAAGTATCCAAGCTTCACAGAATTCCTTGGTCTTGACAGTTGACATGCTTGTGTATGCTTGCAAAAATCTTCAACTCTAAATGAACAGCAACACGTTGTGAACCAGTTATTTTGTTTTGTTTCCATTGC-GTTTTTTTTAAAAGACGTAAATACTGTATATCTTGTT-CTGCTATGTGCTTATATCAGTTAGCGTTCTAAGTCTGA-CCGTTGTACAATGGTTTCGGCCAGAGAAATATTTCCACCCGTGTCATGTTGG-CCTCGTTCTGGTCCGTCCAACATCTATTTGTCTCTTTGTAACCACATTTGTTATGAAAACTTGG] [+] EMBL AK119785 [TCCACTCTCCTCCGTTTGCCTGATCCGATCCCCTCACCTCCGTCCCTGCTTCCTCCCGGCGACCACCGCCCGCCGCGCGATGGGCGGCGCCGCCGTCTCCAGCCTGCTTGCCACCCCAACACCGACCTCTCGACCTCGACCCGTCTCCACCACCACCGCCCCCTTCTCCGTCAACCTCTCCACCGCAGCTGCCCGCGCACCTCGCCTCCTCCTCCTCTCGCGCCGCCCTCGCCCTCGCCCCGCCGCCGCGGTTCTCGGGGTGTCTGATGATACAGGGGTCAAGATGGCTGGCTCCGACATTGTTGGCAAGAACGATTTGCTGATTGTTGGCCCTGGAGTGCTTGGTCGACTGGTAGCTGAGAAATGGCAGGAGGAACATCCAGGATGCAAAGTTTTTGGCCAGACCGCAAGCACAGATCACCACAACGAATTGTCGAATATTGGCATCATTCCCTCCTTGAAGGGATCCACTTTTCCTCAGAAGGTTCCATATGTTATTTTCTGTGCTCCCCCATCTCGTTCGGATGATTACCCTGGGGATGTGAGAGTAGCTGCCTCAAATTGGACTGGTGAAGGCTCTTTCGTTTTTACATCAAGTACTGCTCTGTACGATTGTAGTGACAACGAATTGTGCAATGAGGATTGCCCATCTGTGCCAATTGGCAGAAGCCCTCGTACTGACGTCCTTCTAAAAGCAGAGAATGTTGTTCTTGAGGCAGGAGGCTGTGTCCTCAGGCTAGCAGGACTCTATAAAATAGATAGAGGTGCTCATTTTTTTTGGTTGAGGAAAGGAACTTTGGACACACGACCGGATCATATTATCAATCAAATTCATTATGAGGATGCTGCTTCCCTTGCAATTGCCATAATGAAAAAGGGACACAGGGGTCGAATCTTTTTGGGCTGTGACAATAAGCCTCTTTCCAGGCAAGAAATAATGGACTCTGTTAACAGAAGTGGAAAATTTGACACGAAGTTCCAAGGTTTTACTGGTACAGATGGTCCACTGGGTAAGAAGATGGAGAATTCGAGAACTCGTTCTGAGATTGGTTGGGAGCCCAAGTATCCAAGCTTCACAGAATTCCTTGGTCTTGACAGTTGACATGCTTGTGTATGCTTGCAAAAATCTTCAACTCTAAATGAACAGCAACACGTTGTGAACCAGTTATTTTGTTTTGTTTCCATTGC GTTTTTTTTAAAAGACGTAAATACTGTATATCTTGTT CTGCTATGTGCTTATATCAGTTAGCGTTCTAAGTCTGA CCGTTGTACAATGGTTTCGGCCAGAGAAATATTTCCACCCGTGTCATGTTGG CCTCGTTCTGGTCCGTCCAACATCTATTTGTCTCTTTGTAACCACATTTGTTATGAAAACTTG ] [+] EMBL AK068655 [ TGATCCGATCCCCTCACCTCCGTCCCTGCTTCCTCCCGGCGACCACCGCCCGCCGCGCGATGGGCGGCGCCGCCGTCTCCAGCCTGCTTGCCACCCCAACACCGACCTCTCGACCTCGACCCGTCTCCACCACCACCGCCCCCTTCTCCGTCAACCTCTCCACCGCAGCTGCCCGCGCACCTCGCCTCCTCCTCCTCTCGCGCCGCCCTCGCCCTCGCCCCGCCGCCGCGGTTCTCGGGGTGTCTGATGATACAGGGGTCAAGATGGCTGGCTCCGACATTGTTGGCAAGAACGATTTGCTGATTGTTGGCCCTGGAGTGCTTGGTCGACTGGTAGCTGAGAAATGGCAGGAGGAACATCCAGGATGCAAAGTTTTTGGCCAGACCGCAAGCACAGATCACCACAACGAATTGTCGAATATTGGCATCATTCCCTCCTTGAAGGGATCCACTTTTCCTCAGAAGGTTCCATATGTTATTTTCTGTGCTCCCCCATCTCGTTCGGATGATTACCCTGGGGATGTGAGAGTAGCTGCCTCAAATTGGACTGGTGAAGGCTCTTTCGTTTTTACATCAAGTACTGCTCTGTACGATTGTAGTGACAACGAATTGTGCAATGAGGATTGCCCATCTGTGCCAATTGGCAGAAGCCCTCGTACTGACGTCCTTCTAAAAGCAGAGAATGTTGTTCTTGAGGCAGGAGGCTGTGTCCTCAGGCTAGCAGGACTCTATAAAATAGATAGAGGTGCTCATTTTTTTTGGTTGAGGAAAGGAACTTTGGACACACGACCAGATCATATTATCAATCAAATTCATTATGAGGATGCTGCTTCCCTTGCAATTGCCATAATGAAAAAGGGACACAGGGGTCGAATCTTTTTGGGCTGTGACAATAAGCCTCTTTCCAGGCAAGAAATAATGGACTCTGTTAACAGAAGTGGAAAATTTGACACGAAGTTCCAAGGTTTTACTGGTACAGATGGTCCACTGGGTAAGAAGATGGAGAATTCGAGAACTCGTTCTGAGATTGGTTGGGAGCCCAAGTATCCAAGCTTCACAGAATTCCTTGGTCTTGACAGTTGACATGCTTGTGTATGCTTGCAAAAATCTTCAACTCTAAATGAACAGCAACACGTTGTGAACCAGTTATTTTGTTTTGTTTCCATTGC GTTTTTTTTAAAAGACGTAAATACTGTATATCTTGTT CTGCTATGTGCTTATATCAGTTAGCGTTCTAAGTCTGA CCGTTGTACAATGGTTTCGGCCAGAGAAATATTTCCACCCGTGTCATGTTGG CCTCGTTCTGGTCCGTCCAACATCTATTTGTCTCTTTGTAACCACATTTGTTATGAAAACTTGG] [+] EMBL AK101542 [ CTCCCGGCGACCACCGCCCGCCGCGCGATGGGCGGCGCCGCCGTCTCCAGCCTGCTTGCCACCCCAACACCGACCTCTCGACCTCGACCCGTCTCCACCACCACCGCCCCCTTCTCCGTCAACCTCTCCACCGCAGCTGCCCGCGCACCTCGCCTCCTCCTACTCTCGCGCCGCCCTCGCCCTCGCCCCGCCGCCGCGGTTCTCGGGGTGTCTGATGATACAGGGGTCAAGATGGCTGGCTCCGACATTGTTGGCAAGAACGATTTGCTGATTGTTGGCCCTGGAGTGCTTGGTCGACTGGTAGCTGAGAAATGGCAGGAGGGACATCCAGGATGCAAAGTTTTTGGCCAGACCGCAAGCACAGATCACCACAACGAATTGTCGAATATTGGCATCATTCCCTCCTTGAAGGGATCCACTTTTCCTCAGAAGGTTCCATATGTTATTTTCTGTGCTCCCCCATCTCGTTCGGATGATTACCCTGGGGATGTGAGAGTAGCTGCCTCAAATTGGACTGGTGAAGGCTCTTTCGTTTTTACATCAAGTACTGCTCTGTACGATTGTAGTGACAACGAATTGTGCAATGAGGATTGCCCATCTGTGCCAATTGGCAGAAGCCCTCGTACTGACGTCCTTCTAAAAGCAGAGAATGTTGTTCTTGAGGCAGGAGGCTGTGTCCTCAGGCTAGCAGGACTCTATAAAATAGATAGAGGTGCTCATTTTTTTTGGTTGAGGAAAGGAACTTTGGACACACGACCAGATCATATTATCAATCAAATTCATTATGAGGATGCTGCTCCCCTTGCAATTGCCATAATGAAAAAGGGACACAGGGGTCGAATCTTTTTGGGCTGTGACAATAAGCCTCTTTCCAGGCAAGAAATAATGGACTCTGTTAACAGAAGTGGAAAATTTGACACGAAGTTCCAAGGTTTTACTGGTACAGATGGTCCACTGGGTAAGAAGATGGAGAATTCGAGAACTCGTTCTGAGATTGGTTGGGAGCCCAAGTATCCAAGCTTCACAGAATTCCTTGGTCTTGACAGTTGACATGCTTGTGTATGCTTGCAAAAATCTTCAACTCTAAATGAACAGCAACACGTTGTGAACCAGTTATTTTGTTTTGTTTCCATTGC GTTTTTTTTAAAAGACGTAAATACTGTATATCTTGTT CTGCTATGTGCTTATATCA ] [+] EMBL AK101540 [ CTCCCGGCGACCACCGCCCGCCGCGCGATGGGCGGCGCCGCCGTCTCCAGCCTGCTTGCCACCCCAACACCGACCTCTCGACCTCGACCCGTCTCCACCACCACCGCCCCCTTCTCCGTCAACCTCTCCACCGCAGCTGCCCGCGCACCTCGCCTCCTCCTACTCTCGCGCCGCCCTCGCCCTCGCCCCGCCGCCGCGGTTCTCGGGGTGTCTGATGATACAGGGGTCAAGATGGCTGGCTCCGACATTGTTGGCAAGAACGATTTGCTGATTGTTGGCCCTGGAGTGCTTGGTCGACTGGTAGCTGAGAAATGGCAGGAGGGACATCCAGGATGCAAAGTTTTTGGCCAGACCGCAAGCACAGATCACCACAACGAATTGTCGAATATTGGCATCATTCCCTCCTTGAAGGGATCCACTTTTCCTCAGAAGGTTCCATATGTTATTTTCTGTGCTCCCCCATCTCGTTCGGATGATTACCCTGGGGATGTGAGAGTAGCTGCCTCAAATTGGACTGGTGAAGGCTCTTTCGTTTTTACATCAAGTACTGCTCTGTACGATTGTAGTGACAACGAATTGTGCAATGAGGATTGCCCATCTGTGCCAATTGGCAGAAGCCCTCGTACTGACGTCCTTCTAAAAGCAGAGAATGTTGTTCTTGAGGCAGGAGGCTGTGTCCTCAGGCTAGCAGGACTCTATAAAATAGATAGAGGTGCTCATTTTTTTTGGTTGAGGAAAGGAACTTTGGACACACGACCAGATCATATTATCAATCAAATTCATTATGAGGATGCTGCTCCCCTTGCAATTGCCATAATGAAAAAGGGACACAGGGGTCGAATCTTTTTGGGCTGTGACAATAAGCCTCTTTCCAGGCAAGAAATAATGGACTCTGTTAACAGAAGTGGAAAATTTGACACGAAGTTCCAAGGTTTTACTGGTACAGATGGTCCACTGGGTAAGAAGATGGAGAATTCGAGAACTCGTTCTGAGATTGGTTGGGAGCCCAAGTATCCAAGCTTCACAGAATTCCTTGGTCTTGACAGTTGACATGCTTGTGTATGCTTGCAAAAATCTTCAACTCTAAATGAACAGCAACACGTTGTGAACCAGTTATTTTGTTTTGTTTCCATTGC GTTTTTTTTAAAAGACGTAAATACTGTATATCTTGTT CTGCTATGTGCTTATATCA ] [+] EMBL AK105060 [ AAAGCAGAGAATGTTGTTCTTGAGGCAGGAGGCTGTGTCCTCAGGCTAGCAGGACTCTATAAAATAGATAGAGGTGCTCATTTTTTTTGGTTGAGGAAAGGAACTTTGGACACACGACCAGATCATATTATCAATCAAATTCATTATGAGGATGCTGCTTCCCTTGCAATTGCCATAATGAAAAAGGGATACAGGGGTCGAATCTTTTTGGGCTGTGACAATAAGCCTCTTTCCAGGCAAGAAATAATGGACTCTGTTAACAGAAGTGGAAAATTTGACACGAAGTTCCAAGGTTTTACTGGTACAGATGGTCCACTGGGTAAGAAGATGGAGAATTCGAGAACTCGTTCTGAGATTGGTTGGGAGCCCAAGTATCCAAGCTTCACAGAATTCCTTGGTCTTGACAGTTGACATGCTTGTGTATGCTTGCAAAAATCTTCAACTCTAAATGAACAGCAACACGTTGTGAACCAGTTATTTTGTTTTGTTTCCATTGC GTTTTTTTTAAAAGACGTAAATACTGTATATCTTGTT CTGCTATGTGCTTATATCAGTTAGCGTTCTAAGTCTGA CCGTTGTACAATGGTTTCGGCCAGAGAAATATTTCCACCCGTGTCATGTTGG CCTCGTTCTGGTCCGTCCAACATCTATTTGTCTCTTTGTAACCACATTTGTTATGAAAACTTG ] [+] EMBL C99422 [ gncgcnanTAATGAAAAAGGGACACNANGGTCGAATCTTTTTGGGCTGTGACAATAAGCCTCTTTCCAGGCAAGAAATAATGGACTCTGTTAACAGAAGTGGAAAATTTGACACGAAGTTCCAAGGTTTTACTGGTACAGATGGTCCACTGGGTAAGAAGATGGAGAATTCGAGAACTCGTTCTGAGATTGGTTGGGAGCCCAAGTATCCAAGCTTCACAGAATTCCTTGGTCTTGACAGTTGACATGCTTGTNTATGCTTGCAAAAATCTTCAACTCTAAATGANCAGCAACACGTTGTGAACCAGTTATTTGGTTTNGTTTCCATTGC GTTTTTTTTAAAAGNCGTAAATACTGTATATCTTGTTCCTGCTATGTGCTTAAATCAGTTAGCGGTCTAAag ] [+] EMBL OSC5971 [ CTCTTTCCAGGCAAGAAATAATGGACTCTGTTAACAGAAGTGGAAAATTTGACACGAAGTTCCAAGGTTTTACTGGTACAGATGGTCCACTGGGTAAGAAGATGGAGAATTCGAGAACTCGTTCTGAGATTGGTTGGGAGCCCAAGTATCCAAGCTTCACAGAATTCCTTGGTCTTGACAGTTGACATGCTTGTGTATGCTTGCAAAAATCTTCAACTCTAAATGAACAGCAACACGTTGTGAACCAGTTATTTTGTTTTGTTTCCATNGCGGTTTTTTTTAAAAGACGTAAATACTGTATATCTTGTT CTGCTATGTGCTTATATCAGTTAGCGTTCTAAGTCTGACCCGTTGTACAATGG TTCGGCCAGAGAAATATTTCCACCCGTGTCATGTTGGCCCTCGTTCTGGTCCGTCCAA ] consensusID : consensus_13388#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1257 fasta sequence [ACCTCCCTCTCTGCTTCCTCCCGGCGACCACCGCCCGCCGCGCGATGGGCGGCGCCGCCGTCTCCAGCCTGCTTGCCACCCCAACACCGACCTCTCGACCTCGACCCGTCTCCACCACCACCGCCCCCTTCTCCGTCAACCTCTCCACCGCAGCTGCCCGCGCACCTCGCCTCCTCCTCCTCTCGCGCCGCCCTCGCCCTCGCCCCGCCGCCGCGGTTCTCGGGGTGTCTGATGATACAGGGGTCAAGATGGCTGGCTCCGACATTGTTGGCAAGAACGATTTGCTGATTGTTGGCCCTGGAGTGCTTGGTCGACTGGTAGCTGAGAAATGGCAGGAGGAACATCCAGGATGCAAAGTTTTTGGCCAGACCGCAAGCACAGATCACCACAACGAATTGTCGAATATTGGCATCATTCCCTCCTTGAAGGGATCCACTTTTCCTCAGAAGAAAATGCGTGCAGAGTAGCTGCCTCAAATTGGACTGGTGAAGGCTCTTTCGTTTTTACATCAAGTACTGCTCTGTACGATTGTAGTGACAACGAATTGTGCAATGAGGATTGCCCATCTGTGCCAATTGGCAGAAGCCCTCGTACTGACGTCCTTCTAAAAGCAGAGAATGTTGTTCTTGAGGCAGGAGGCTGTGTCCTCAGGCTAGCAGGACTCTATAAAATAGATAGAGGTGCTCATTTTTTTTGGTTGAGGAAAGGAACTTTGGACACACGACCAGATCATATTATCAATCAAATTCATTATGAGGATGCTGCTTCCCTTGCAATTGCCATAATGAAAAAGGGACACAGGGGTCGAATCTTTTTGGGCTGTGACAATAAGCCTCTTTCCAGGCAAGAAATAATGGACTCTGTTAACAGAAGTGGAAAATTTGACACGAAGTTCCAAGGTTTTACTGGTACAGATGGTCCACTGGGTAAGAAGATGGAGAATTCGAGAACTCGTTCTGAGATTGGTTGGGAGCCCAAGTATCCAAGCTTCACAGAATTCCTTGGTCTTGACAGTTGACATGCTTGTGTATGCTTGCAAAAATCTTCAACTCTAAATGAACAGCAACACGTTGTGAACCAGTTATTTTGTTTTGTTTCCATTGCGTT-TTTTTTAAAAGACGTAAATACTGTATATCTTGTTGGGCTATGTGCTTATATCAGTTAGCG-TTCTAAGTCTGACCCGTTGTACCATGGTTTCGGCCCAGAGAAATATTTCCACCCGTGTCATGTTGGCCTCGTTCTGGTCCAAAAAAAAAA] [+] EMBL CB656744 [ACCTCCCTCTCTGCTTCCTCCCGGCGACCACCGCCCGCCGCGCGATGGGCGGCGCCGCCGTCTCCAGCCTGCTTGCCACCCCAACACCGACCTCTCGACCTCGACCCGTCTCCACCACCACCGCCCCCTTCTCCGTCAACCTCTCCACCGCAGCTGCCCGCGCACCTCGCCTCCTCCTCCTCTCGCGCCGCCCTCGCCCTCGCCCCGCCGCCGCGGTTCTCGGGGTGTCTGATGATACAGGGGTCAAGATGGCTGGCTCCGACATTGTTGGCAAGAACGATTTGCTGATTGTTGGCCCTGGAGTGCTTGGTCGACTGGTAGCTGAGAAATGGCAGGAGGAACATCCAGGATGCAAAGTTTTTGGCCAGACCGCAAGCACAGATCACCACAACGAATTGTCGAATATTGGCATCATTCCCTCCTTGAAGGGATCCACTTTTCCTCAGAAGAAAATGCGTGCAGAGTAGCTGCCTCAAATTGGACTGGTGAAGGCTCTTTCGTTTTTACATCAAGTACTGCTCTGTACGATTGTAGTGACAACGAATTGTGCAATGAGGATTGCCCATCTGTGCCAATTGGCAGAAGCCCTCGTACTGACGTCCTTCTAAAAGCAGAGAATGTTGTTCTTGAGGCAGGAGGCTGTGTCCTCAGGCTAGCAGGACTCTATAAAATAGATAGAGGTGCTCATTTTTTTTGGTTGAGGAAAGGAACTTTGGACACACGACCAGATCATATTATCAATCAAATTCATTATGAGGATGCTGCTTCCCTTGCAAT ] [-] EMBL CB656745 [ TTGGCCAGACCGCAAGCACAGATCACCACAACGAATTGTCGAATATTGGCATCATTCCCTCCTTGAAGGGATCCACTTTTCCTCAGAAGAAAATGCGTGCAGAGTAGCTGCCTCAAATTGGACTGGTGAAGGCTCTTTCGTTTTTACATCAAGTACTGCTCTGTACGATTGTAGTGACAACGAATTGTGCAATGAGGATTGCCCATCTGTGCCAATTGGCAGAAGCCCTCGTACTGACGTCCTTCTAAAAGCAGAGAATGTTGTTCTTGAGGCAGGAGGCTGTGTCCTCAGGCTAGCAGGACTCTATAAAATAGATAGAGGTGCTCATTTTTTTTGGTTGAGGAAAGGAACTTTGGACACACGACCAGATCATATTATCAATCAAATTCATTATGAGGATGCTGCTTCCCTTGCAATTGCCATAATGAAAAAGGGACACAGGGGTCGAATCTTTTTGGGCTGTGACAATAAGCCTCTTTCCAGGCAAGAAATAATGGACTCTGTTAACAGAAGTGGAAAATTTGACACGAAGTTCCAAGGTTTTACTGGTACAGATGGTCCACTGGGTAAGAAGATGGAGAATTCGAGAACTCGTTCTGAGATTGGTTGGGAGCCCAAGTATCCAAGCTTCACAGAATTCCTTGGTCTTGACAGTTGACATGCTTGTGTATGCTTGCAAAAATCTTCAACTCTAAATGAACAGCAACACGTTGTGAACCAGTTATTTTGTTTTGTTTCCATTGCGTT TTTTTTAAAAGACGTAAATACTGTATATCTTGTTGGGCTATGTGCTTATATCAGTTAGCG TTCTAAGT ] [+] EMBL BI796953 [ TTTTGTTTCCCTTGCGTTGTTTTTTAAAAGACGTAAATACTGTATATCTTGTTCTGCTATGTGCTTATATCAGTTAGCGTTTCTAAGTCTGACCCGTTGTACCATGGTTTCGGCCCAGAGAAATATTTCCACCCGTGTCATGTTGGCCTCGTTCTGGTCCAAAAAAAAAA] consensusID : consensus_13388#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 430 fasta sequence [CTATAAAATAGATAGAGGTGCTCATTTTTTTTGGTTGAGGAAAGGAACTTTGGACACACGACCAGATCATATTATCAATCAAATTCATTATGAGGATGCTGCTTCCCTTGCAATTGCCATAATGAAAAAGGGACACAGGGGTCGAATCTTTTTGGGCTGTGACAATAAGCCTCTTTCCAGGCAAGAAATAATGGACTCTGTTAACAGAAGTGGAAAATTTGACACGAAGTTCCAAGGTTTTACTGGTACAGATGGTCCACTGGGTAAGAAGATGGAGAATTCGAGAACTCGTTNTGAGATTGGTTGGGAGCCCAAGTATCCAAGCTTCACAGAATTCCTTGGTCTTGACAGTTGACATGCTTGTGTATGCTTGCAAAAATCTTCAACTCTAAATGAACAGCAACACGTTGTGACCCAAAAAAAAAAAAAA] [+] EMBL AU197533 [CTATAAAATAGATAGAGGTGCTCATTTTTTTTGGTTGAGGAAAGGAACTTTGGACACACGACCAGATCATATTATCAATCAAATTCATTATGAGGATGCTGCTTCCCTTGCAATTGCCATAATGAAAAAGGGACACAGGGGTCGAATCTTTTTGGGCTGTGACAATAAGCCTCTTTCCAGGCAAGAAATAATGGACTCTGTTAACAGAAGTGGAAAATTTGACACGAAGTTCCAAGGTTTTACTGGTACAGATGGTCCACTGGGTAAGAAGATGGAGAATTCGAGAACTCGTTNTGAGATTGGTTGGGAGCCCAAGTATCCAAGCTTCACAGAATTCCTTGGTCTTGACAGTTGACATGCTTGTGTATGCTTGCAAAAATCTTCAACTCTAAATGAACAGCAACACGTTGTGACCCAAAAAAAAAAAAAA] consensusID : consensus_13388#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 191 fasta sequence [CTTATATCAGTTAGCGTTNTAAGTNTGACCGTTGTACAATGGTTTCGGCCAGAGAAATATTTCCCCCCGTNTCATGTTGGCCTCGTTCTGGTCCGTCCAANATCTATTTGTCTCTTTGTAACCNCATTTNTTNTGNAAAAAAAAANAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNTT] [+] EMBL AU032760 [CTTATATCAGTTAGCGTTNTAAGTNTGACCGTTGTACAATGGTTTCGGCCAGAGAAATATTTCCCCCCGTNTCATGTTGGCCTCGTTCTGGTCCGTCCAANATCTATTTGTCTCTTTGTAACCNCATTTNTTNTGNAAAAAAAAANAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNTT] consensusID : consensus_13388#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 180 fasta sequence [CCGCCGGCGACCACCGCCCGCNGCGCGATGGGCGGCGCCGCCGTNTCCAGCCTGCTTGCCACCCCAACACCGACCTCTNGACCTCGACCCATNTCCACCACCACCGCCCCCTTNTCCGTCAACNTNTCCACCGCAGATGCCCGCGCACCTNNACTCCTCCTCCTNTANCGNCGCCCTCAN] [+] EMBL OSC103021 [CCGCCGGCGACCACCGCCCGCNGCGCGATGGGCGGCGCCGCCGTNTCCAGCCTGCTTGCCACCCCAACACCGACCTCTNGACCTCGACCCATNTCCACCACCACCGCCCCCTTNTCCGTCAACNTNTCCACCGCAGATGCCCGCGCACCTNNACTCCTCCTCCTNTANCGNCGCCCTCAN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13388#0 TCCACTCTCCTCCGTTTGCCTGATCCGATCCCCTCACCTCCGTCCCTGCTTCCTCCCGGC 60 consensus_13388#2 ------------------------------------------------------------ consensus_13388#1 ------------------------------------------------------------ consensus_13388#4 ------------------------------------------------------------ consensus_13388#3 ------------------------------------------------------------ consensus_13388#0 GACCACCGCCCGCCGCGCGATGGGCGGCGCCGCCGTCTCCAGCCTGCTTGCCACCCCAAC 120 consensus_13388#2 ------------------------------------------------------------ consensus_13388#1 ------------------------------------------------------------ consensus_13388#4 ------------------------------------------------------------ consensus_13388#3 ------------------------------------------------------------ consensus_13388#0 ACCGACCTCTCGACCTCGACCCGTCTCCACCACCACCGCCCCCTTCTCCGTCAACCTCTC 180 consensus_13388#2 ------------------------------------------------------------ consensus_13388#1 ------------------------------------------------------------ consensus_13388#4 ------------------------------------------------------------ consensus_13388#3 ------------------------------------------------------------ consensus_13388#0 CACCGCAGCTGCCCGCGCACCTCGCCTCCTCCTCCTCTCGCGCCGCCCTCGCCCTCGCCC 240 consensus_13388#2 ------------------------------------------------------------ consensus_13388#1 ------------------------------------------------------------ consensus_13388#4 ------------------------------------------------------------ consensus_13388#3 ------------------------------------------------------------ consensus_13388#0 CGCCGCCGCGGTTCTCGGGGTGTCTGATGATACAGGGGTCAAGATGGCTGGCTCCGACAT 300 consensus_13388#2 ------------------------------------------------------------ consensus_13388#1 ------------------------------------------------------------ consensus_13388#4 ------------------------------------------------------------ consensus_13388#3 ------------------------------------------------------------ consensus_13388#0 TGTTGGCAAGAACGATTTGCTGATTGTTGGCCCTGGAGTGCTTGGTCGACTGGTAGCTGA 360 consensus_13388#2 ------------------------------------------------------------ consensus_13388#1 ------------------------------------------------------------ consensus_13388#4 ------------------------------------------------------------ consensus_13388#3 ------------------------------------------------------------ consensus_13388#0 GAAATGGCAGGAGGAACATCCAGGATGCAAAGTTTTTGGCCAGACCGCAAGCACAGATCA 420 consensus_13388#2 ------------------------------------------------------------ consensus_13388#1 ------------------------------------------------------------ consensus_13388#4 ------------------------------------------------------------ consensus_13388#3 ------------------------------------------------------------ consensus_13388#0 CCACAACGAATTGTCGAATATTGGCATCATTCCCTCCTTGAAGGGATCCACTTTTCCTCA 480 consensus_13388#2 ------------------------------------------------------------ consensus_13388#1 ------------------------------------------------------------ consensus_13388#4 ------------------------------------------------------------ consensus_13388#3 ------------------------------------------------------------ consensus_13388#0 GAAGGTTCCATATGTTATTTTCTGTGCTCCCCCATCTCGTTCGGATGATTACCCTGGGGA 540 consensus_13388#2 ------------------------------------------------------------ consensus_13388#1 ------------------------------------------------------------ consensus_13388#4 ------------------------------------------------------------ consensus_13388#3 ------------------------------------------------------------ consensus_13388#0 TGTGAGAGTAGCTGCCTCAAATTGGACTGGTGAAGGCTCTTTCGTTTTTACATCAAGTAC 600 consensus_13388#2 ------------------------------------------------------------ consensus_13388#1 ------------------------------------------------------------ consensus_13388#4 ------------------------------------------------------------ consensus_13388#3 ------------------------------------------------------------ consensus_13388#0 TGCTCTGTACGATTGTAGTGACAACGAATTGTGCAATGAGGATTGCCCATCTGTGCCAAT 660 consensus_13388#2 ------------------------------------------------------------ consensus_13388#1 ------------------------------------------------------------ consensus_13388#4 ------------------------------------------------------------ consensus_13388#3 ------------------------------------------------------------ consensus_13388#0 TGGCAGAAGCCCTCGTACTGACGTCCTTCTAAAAGCAGAGAATGTTGTTCTTGAGGCAGG 720 consensus_13388#2 ------------------------------------------------------------ consensus_13388#1 ------------------------------------------------------------ consensus_13388#4 ------------------------------------------------------------ consensus_13388#3 ------------------------------------------------------------ consensus_13388#0 AGGCTGTGTCCTCAGGCTAGCAGGACTCTATAAAATAGATAGAGGTGCTCATTTTTTTTG 780 consensus_13388#2 ---------------------------CTATAAAATAGATAGAGGTGCTCATTTTTTTTG 33 consensus_13388#1 ------------------------------------------------------------ consensus_13388#4 ------------------------------------------------------------ consensus_13388#3 ------------------------------------------------------------ consensus_13388#0 GTTGAGGAAAGGAACTTTGGACACACGACCAGATCATATTATCAA-TCAAATTCATTATG 839 consensus_13388#2 GTTGAGGAAAGGAACTTTGGACACACGACCAGATCATATTATCAA-TCAAATTCATTATG 92 consensus_13388#1 --------ACCTCCCTCTCTGCTTCCTCCCGGCGACCACCGCCCG-CCGCGCGATGGGCG 51 consensus_13388#4 -------------------------CCGCCGGCGACCACCGCCCG-CNGCGCGATGGGCG 34 consensus_13388#3 ----------------------CTTATATCAGTTAGCGTTNTAAGTNTGACCGTTGTACA 38 * * consensus_13388#0 AGGATGCTGCTTCCCTTGCAATTGCCATAATGAAAAAGGGACACAGGGGTCGAATCTTTT 899 consensus_13388#2 AGGATGCTGCTTCCCTTGCAATTGCCATAATGAAAAAGGGACACAGGGGTCGAATCTTTT 152 consensus_13388#1 GCGCCGCCGTCTCCAGCCTGCTTGCCACCCCAACACCGACCTCTCGACCTCGACCCGTCT 111 consensus_13388#4 GCGCCGCCGTNTCCAGCCTGCTTGCCACCCCAACACCGACCTCTNGACCTCGACCCATNT 94 consensus_13388#3 ATGGTTTCGGCCAGAGAAATATTTCCCCCC-----GTNTCATGTTGGCCTCGTTCTGGTC 93 * * ** ** * *** consensus_13388#0 TGGGCTGTGACAATAAGCCTCTTTCCAGGCAAGAAATAATGGACTCTGTTAACAGAAGTG 959 consensus_13388#2 TGGGCTGTGACAATAAGCCTCTTTCCAGGCAAGAAATAATGGACTCTGTTAACAGAAGTG 212 consensus_13388#1 ----CCACCACCACCGCCCCCTTCTCCGTCAACCTCT-----CCACCGCAGCTGCCCGCG 162 consensus_13388#4 ----CCACCACCACCGCCCCCTTNTCCGTCAACNTNT-----CCACCGCAGATGCCCGCG 145 consensus_13388#3 CGTCCAANATCTATTTGTCTCTTTGTAACCNCATTTNTTNTGNAAAAAAAAANAAAACAA 153 * * * * *** * consensus_13388#0 GAAAATTTGACACGAAGTTCCAAGGTTTTACTGGTACAGATGGTCCACTGGGTAAGAAGA 1019 consensus_13388#2 GAAAATTTGACACGAAGTTCCAAGGTTTTACTGGTACAGATGGTCCACTGGGTAAGAAGA 272 consensus_13388#1 CAC--CTCGCCTCCTCCTCCTCTCGCGCCGCCCTCGCCCTCGCCCCGCCGCCGCGGTTCT 220 consensus_13388#4 CAC--CTNNACTCCTCCTCCTNTANCGNCGCCCTCAN----------------------- 180 consensus_13388#3 AAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNTT---------------------- 191 * consensus_13388#0 TGGAGAATTCGAGAACTCGTTCTGAGATTGGTTGGGAGCCCAAGTATCCAAGCTTCACAG 1079 consensus_13388#2 TGGAGAATTCGAGAACTCGTTNTGAGATTGGTTGGGAGCCCAAGTATCCAAGCTTCACAG 332 consensus_13388#1 CGGGGTGTCTGATGATACAGGGGTCAAGATGGCTGGCTCCGACATTGTTGGCAAGAACGA 280 consensus_13388#4 ------------------------------------------------------------ consensus_13388#3 ------------------------------------------------------------ consensus_13388#0 AATTCCTTGGTCTTGACAGTTGACATGCTTGTGTATGCTTGCAAAAATCTTCAACTCTAA 1139 consensus_13388#2 AATTCCTTGGTCTTGACAGTTGACATGCTTGTGTATGCTTGCAAAAATCTTCAACTCTAA 392 consensus_13388#1 TTTGCTGATTGTTGGCCCTGGAGTGCTTGGTCGACTGGTAGCTGAGAAATGGCAGGAGGA 340 consensus_13388#4 ------------------------------------------------------------ consensus_13388#3 ------------------------------------------------------------ consensus_13388#0 ATGAACAGCAACACGTTGTGAACCAGTTATTTTGTTTTGTTTCCATTGCGTTTTTTTTAA 1199 consensus_13388#2 ATGAACAGCAACACGTTGTGACCCAAAAAAAAAAAAAA---------------------- 430 consensus_13388#1 ACATCCAGGATGCAAAGTTTTTGGCCAGACCGCAAGCACAGATCACCACAACGAATTGTC 400 consensus_13388#4 ------------------------------------------------------------ consensus_13388#3 ------------------------------------------------------------ consensus_13388#0 AAGACGTAAATACTGTATATCTTGTTCTGCTATGTGCTTATATCAGTTAGCGTTCTAAGT 1259 consensus_13388#2 ------------------------------------------------------------ consensus_13388#1 GAATATTGGCATCATTCCCTCCTTGAAGGGATCCACTTTTCCTCAGAAGAAAATGCGTGC 460 consensus_13388#4 ------------------------------------------------------------ consensus_13388#3 ------------------------------------------------------------ consensus_13388#0 CTGACCGTTGTACAATGGTTTCGGCCAGAGAAATATTTCCACCCGTGTCATGTTGGCCTC 1319 consensus_13388#2 ------------------------------------------------------------ consensus_13388#1 AGAGTAGCTGCCTCAAATTGGACTGGTGAAGGCTCTTTCGTTTTTACATCAAGTACTGCT 520 consensus_13388#4 ------------------------------------------------------------ consensus_13388#3 ------------------------------------------------------------ consensus_13388#0 GTTCTGGTCCGTCCAACATCTATTTGTCTCTTTGTAACCACATTTGTTATGAAAACTTGG 1379 consensus_13388#2 ------------------------------------------------------------ consensus_13388#1 CTGTACGATTGTAGTGACAACGAATTGTGCAATGAGGATTGCCCATCTGTGCCAATTGGC 580 consensus_13388#4 ------------------------------------------------------------ consensus_13388#3 ------------------------------------------------------------ consensus_13388#0 ------------------------------------------------------------ consensus_13388#2 ------------------------------------------------------------ consensus_13388#1 AGAAGCCCTCGTACTGACGTCCTTCTAAAAGCAGAGAATGTTGTTCTTGAGGCAGGAGGC 640 consensus_13388#4 ------------------------------------------------------------ consensus_13388#3 ------------------------------------------------------------ consensus_13388#0 ------------------------------------------------------------ consensus_13388#2 ------------------------------------------------------------ consensus_13388#1 TGTGTCCTCAGGCTAGCAGGACTCTATAAAATAGATAGAGGTGCTCATTTTTTTTGGTTG 700 consensus_13388#4 ------------------------------------------------------------ consensus_13388#3 ------------------------------------------------------------ consensus_13388#0 ------------------------------------------------------------ consensus_13388#2 ------------------------------------------------------------ consensus_13388#1 AGGAAAGGAACTTTGGACACACGACCAGATCATATTATCAATCAAATTCATTATGAGGAT 760 consensus_13388#4 ------------------------------------------------------------ consensus_13388#3 ------------------------------------------------------------ consensus_13388#0 ------------------------------------------------------------ consensus_13388#2 ------------------------------------------------------------ consensus_13388#1 GCTGCTTCCCTTGCAATTGCCATAATGAAAAAGGGACACAGGGGTCGAATCTTTTTGGGC 820 consensus_13388#4 ------------------------------------------------------------ consensus_13388#3 ------------------------------------------------------------ consensus_13388#0 ------------------------------------------------------------ consensus_13388#2 ------------------------------------------------------------ consensus_13388#1 TGTGACAATAAGCCTCTTTCCAGGCAAGAAATAATGGACTCTGTTAACAGAAGTGGAAAA 880 consensus_13388#4 ------------------------------------------------------------ consensus_13388#3 ------------------------------------------------------------ consensus_13388#0 ------------------------------------------------------------ consensus_13388#2 ------------------------------------------------------------ consensus_13388#1 TTTGACACGAAGTTCCAAGGTTTTACTGGTACAGATGGTCCACTGGGTAAGAAGATGGAG 940 consensus_13388#4 ------------------------------------------------------------ consensus_13388#3 ------------------------------------------------------------ consensus_13388#0 ------------------------------------------------------------ consensus_13388#2 ------------------------------------------------------------ consensus_13388#1 AATTCGAGAACTCGTTCTGAGATTGGTTGGGAGCCCAAGTATCCAAGCTTCACAGAATTC 1000 consensus_13388#4 ------------------------------------------------------------ consensus_13388#3 ------------------------------------------------------------ consensus_13388#0 ------------------------------------------------------------ consensus_13388#2 ------------------------------------------------------------ consensus_13388#1 CTTGGTCTTGACAGTTGACATGCTTGTGTATGCTTGCAAAAATCTTCAACTCTAAATGAA 1060 consensus_13388#4 ------------------------------------------------------------ consensus_13388#3 ------------------------------------------------------------ consensus_13388#0 ------------------------------------------------------------ consensus_13388#2 ------------------------------------------------------------ consensus_13388#1 CAGCAACACGTTGTGAACCAGTTATTTTGTTTTGTTTCCATTGCGTTTTTTTTAAAAGAC 1120 consensus_13388#4 ------------------------------------------------------------ consensus_13388#3 ------------------------------------------------------------ consensus_13388#0 ------------------------------------------------------------ consensus_13388#2 ------------------------------------------------------------ consensus_13388#1 GTAAATACTGTATATCTTGTTGGGCTATGTGCTTATATCAGTTAGCGTTCTAAGTCTGAC 1180 consensus_13388#4 ------------------------------------------------------------ consensus_13388#3 ------------------------------------------------------------ consensus_13388#0 ------------------------------------------------------------ consensus_13388#2 ------------------------------------------------------------ consensus_13388#1 CCGTTGTACCATGGTTTCGGCCCAGAGAAATATTTCCACCCGTGTCATGTTGGCCTCGTT 1240 consensus_13388#4 ------------------------------------------------------------ consensus_13388#3 ------------------------------------------------------------ consensus_13388#0 ----------------- consensus_13388#2 ----------------- consensus_13388#1 CTGGTCCAAAAAAAAAA 1257 consensus_13388#4 ----------------- consensus_13388#3 ----------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||