These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13409#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1373 fasta sequence [GTAGCTGATGGGGCAGAGAAACCTATTGGATGGGGTCTCTATAACTCTGTGTCCATGTTTTGTGTTCGGCTGATGCAACTAGAAGAAGAGGCAAAAAGGGATCCAACATGTGCACTAAATATGGAAAGACTGCTTGAGGCAAGGATTTTATCTGCTGTGGATTTACGGCGCAGTTTAGGTCTCCCTTCAGTTCACACAAATGCTTATCGTCTCATCAACAGTGAAGGGGACAGATTGTCTGGTCTAATAGTGGATATCTTTGCTGATGTCGCTGTAGTTGCTTCATCTGCTGCTTGGGTTGAGAAATATAGGCATGAAATCCAGTTCCTTGTTAACAAAGTCAGTGATGTGAACCATATAAAGTGGAGATCATCAACAGATATTCTAAAAGAAGAAGGATTAGATGTATCAGAACAAAAGGATCCTGAATCGTCTTCACACTGTGGAACAGTGGAGGTCATGGAGAATGATGTTCTCTATCTAGTCTCATTGGAGGGGCAGAAAACAGGGTTTTATGCAGATCAACGTGAGAACCGTCATTTCATATCAACACTCTCAAAGGACCAAAGGGTTCTTGATCTGTGCTGCTATAGTGGTGGTTTTGCTCTAAATGCAGCAAAGGGTGGTGCTAATAATGTCATTGGCATTGATTCATCAGCATCAGCACTAGACCTTGCCAATAAGAATATTATCCTGAATAAGCTTGACACCCAAAGGATTTCGTTTGTAAAAGAAGATGCGACTGCATTCATGAAAGGTGCTATCTCAAGAAATGAGGTCTGGGACTTGGTAATCCTTGATCCTCCAAAGTTGGCACCTCGAAAAAAGGTGCTACAAAGTGCCTCGGGTATGTACAGAAGCTTGAACGCTCTTGCGATGCAAGTGGTAAAGCCAGGGGGGTTACTCATGACATGCTCATGCTCT-GGAGCTA-TGACCCAAAGCGGCCTCTT-CCTCAGAA-CCATTCAGGGTGCTGCATCAATGACCGGCCGAAAGGTTACAGTT-CTACGCCAAGCAGGGGCAGCCTGTGATCAT-CCCGTAGATCCTGCATACCCTGAAGGCCGATATCTCAGCAATTACTTGCTCCGAGTGACCTGAAGGAAAAAAAAAAAGGCTTAGAAGCCTTCTACTGACCAATTACCGCACAGCATTTTCCTAAGAGCTGATGCTTTGAAGTTATAGTTCAGTTTCATTTCATTTTTTAAGTCATACTTGTTAGATCAAGAAACTTTCCGAAGGAAAGATGTATGATGATATAGATTTTGAAGATTATTTGTTAATTTCTAGCGCAGATCATTATTTACCCTTGTTGAGATTAACGTTTTTAACACTTTTTTATATATGGAATATGGAAGA-TGTGTAAATCATAAAAAAGG] [+] EMBL AK060232 [GTAGCTGATGGGGCAGAGAAACCTATTGGATGGGGTCTCTATAACTCTGTGTCCATGTTTTGTGTTCGGCTGATGCAACTAGAAGAAGAGGCAAAAAGGGATCCAACATGTGCACTAAATATGGAAAGACTGCTTGAGGCAAGGATTTTATCTGCTGTGGATTTACGGCGCAGTTTAGGTCTCCCTTCAGTTCACACAAATGCTTATCGTCTCATCAACAGTGAAGGGGACAGATTGTCTGGTCTAATAGTGGATATCTTTGCTGATGTCGCTGTAGTTGCTTCATCTGCTGCTTGGGTTGAGAAATATAGGCATGAAATCCAGTTCCTTGTTAACAAAGTCAGTGATGTGAACCATATAAAGTGGAGATCATCAACAGATATTCTAAAAGAAGAAGGATTAGATGTATCAGAACAAAAGGATCCTGAATCGTCTTCACACTGTGGAACAGTGGAGGTCATGGAGAATGATGTTCTCTATCTAGTCTCATTGGAGGGGCAGAAAACAGGGTTTTATGCAGATCAACGTGAGAACCGTCATTTCATATCAACACTCTCAAAGGACCAAAGGGTTCTTGATCTGTGCTGCTATAGTGGTGGTTTTGCTCTAAATGCAGCAAAGGGTGGTGCTAATAATGTCATTGGCATTGATTCATCAGCATCAGCACTAGACCTTGCCAATAAGAATATTATCCTGAATAAGCTTGACACCCAAAGGATTTCGTTTGTAAAAGAAGATGCGACTGCATTCATGAAAGGTGCTATCTCAAGAAATGAGGTCTGGGACTTGGTAATCCTTGATCCTCCAAAGTTGGCACCTCGAAAAAAGGTGCTACAAAGTGCCTCGGGTATGTACAGAAGCTTGAACGCTCTTGCGATGCAAGTGGTAAAGCCAGGGGGGTTACTCATGACATGCTCATGCTCT GGAGCTA TGACCCAAAGCGGCCTCTT CCTCAGAA CCATTCAGGGTGCTGCATCAATGACCGGCCGAAAGGTTACAGTT CTACGCCAAGCAGGGGCAGCCTGTGATCAT CCCGTAGATCCTGCATACCCTGGAGGCCGATATCTCAGCAATTACTTGCTCCGAGTGACCTGAAGG AAAAAAAAAAGGCTTAGAAGCCTTCTACTGACCAATTACCGCACAGCATTTTCCTAAGAGCTGATGCTTTGAAGTTATAGTTCAGTTTCATTTCATTTTTTAAGTCATACTTGTTAGATCAAGAAACTTTCCGAAGGAAAGATGTATGATGATATAGATTTTGAAGATTATTTGTTAATTTCTAGCGCAGATCATTATTTACCCTTGTTGAGATTAACGTTTTTAACACTTTTTTATATATGGAATATGGAAGA TGTGTAAATCAT ] [-] EMBL CB663492 [ GAAAACAGGGTTTTATGCAGATCAACGTGAGAACCGTCATTTCATATCAACACTCTCAAAGGACCAAAGGGTTCTTGATCTGTGCTGCTATAGTGGTGGTTTTGCTCTAAATGCAGCAAAGGGTGGTGCTAATAATGTCATTGGCATTGATTCATCAGCATCAGCACTAGACCTTGCCAATAAGAATATTATCCTGAATAAGCTTGACACCCAAAGGATTTCGTTTGTAAAAGAAGATGCGACTGCATTCATGAAAGGTGCTATCTCAAGAAATGAGGTCTGGGACTTGGTAATCCTTGATCCTCCAAAGTTGGCACCTCGAAAAAAGGTGCTACAAAGTGCCTCGGGTATGTACAGAAGCTTGAACGCTCTTGCGATGCAAGTGGTAAAGCCAGGGGGGTTACTCATGACATGCTCATGCTCT GGAGCTA TGACCCAAAGCGGCCTCTT CCTCAGAA CCATTCAGGGTGCTGCATCAATGACCGGCCGAAAGGTTACAGTT TTACGCCAAGCAGGGGCAGCCTGTGATCAT CCCGTAGATCCTGCATACCCTGAAGGCCGATATCTCAGCAATTACTTGCTCCGAGTGACCTGAAGGAAAAAAAAAAAGGCTTAGAAGCCTTCTACTGACCAATTACCGCACAGCATTTTCCTAAGAGCTGATGCTTTGAAGTTATAGTTCAGTTTCATTTCATTTTTTAAGTCATACTTGTTAGATCAAGAAACTTTCCGAAGGAAAGATGTATGATGATATAGATTTTGAAGATTATTTG ] [-] EMBL CB649822 [ AAGGGTGGTGCTAATAATGTCATTGGCATTGATTCATCAGCATCAGCACTAGACCTTGCCAATAAGAATATTATCCTGAATAAGCTTGACACCCAAAGGATTTCGTTTGTAAAAGAAGATGCGACTGCATTCATGAAAGGTGCTATCTCAAGAAATGAGGTCTGGGACTTGGTAATCCTTGATCCTCCAAAGTTGGCACCTCGAAAAAAGGTGCTACAAAGTGCCTCGGGTATGTACAGAAGCTTGAACGCTCTTGCGATGCAAGTGGTAAAGCCAGGGGGGTTACTCATGACATGCTCATGCTCT GGAGCTA TGACCCAAAGCGGCCTCTT CCTCAGAA CCATTCAGGGTGCTGCATCAATGACCGGCCGAAAGGTTACAGTT TTACGCCAAGCAGGGGCAGCCTGTGATCAT CCCGTAGATCCTGCATACCCTGAAGGCCGATATCTCAGCAATTACTTGCTCCGAGTGACCTGAAGGAAAAAAAAAAAGGCTTAGAAGCCTTCTACTGACCAATTACCGCACAGCATTTTCCTAAGAGCTGATGCTTTGAAGTTATAGTTCAGTTTCATTTCATTTTTTAAGTCATACTTGTTAGATCAAGAAACTTTCCGAAGGAAAGATGTATGATGATATAGATTTTGAAGATTATTTGTTAATTTCTAGCGCAGATCATTATTTACCCTTGTTGAGATTAACGTTTTTAACACTTGTTTATATATGGAATATGGAAGAGTGTGTAAATCAAAAAAAAGG] [+] EMBL CB000138 [ GTTTGTAAAAGAAGATGCGACTGCATTCATGAAACGTTCTATCTCAAGAAATGAGGTCTGGGACTTGGTAATCCTTGATCCTCCAAAGTTGGCACCTCGAAAAAAGGTGCTACAAAGTGCCTCGGGTATGTACAGAAGCTTGAACGCTCTTGCGATGCAAGTGGTAAAGCCAGGGGGGTTACTCATGACATGCTCATGCTCT GGAGCTA TGACCCAAAGCGGCCTCTT CCTCAGAA CCATTCAGGGTGCTGCATCAATGACCGGCCGAAAGGTTACAGTT CTACGCCAAGCAGGGGCAGCCTGTGATCAT CCCGTAGATCCTGCATACCCTGAAGGCCGATATCTCAGCAATTACTTGCTCCGAGTGACCTGAAGGAAAAAAAAAAAGGCTTAGAAGCCTTCTACTGACCAATTACCGCACAGCATTTTCCTAAGAGCTGATGCTTTGAAGTTATAGTTCAGTTTCATTTCATTTTTTAAGTCATACTTGTTAGATCAAGAAACTTTCCGAAGGAAAGATGTATGATGATATAGATTTTGAAGATTATTTGTTAAaaaaaaaa ] [+] EMBL CB000403 [ TTTGTAAAAGAAGATGCGACTGCATTCATGAACTGTGCTATCTCAAGAAATGAGGTCTGGGACTTGGTAATCCTTGATCCTCCAAAGTTGGCACCTCGAAAAAAGGTGCTACAAAGTGCCTCGGGTATGTACAGAAGCTTGAACGCTCTTGCGATGCAAGTGGTAAAGCCAGGGGGGTTACTCATGACATGCTCATGCTCT GGAGCTA TGACCCAAAGCGGCCTCTT CCTCAGAA CCATTCAGGGTGCTGCATCAATGACCGGCCGAAAGGTTACAGTT CTACGCCAAGCAGGGGCAGCCTGTGATCAT CCCGTAGATCCTGCATACCCTGAAGGCCGATATCTCAGCAATTACTTGCTCCGAGTGACCTGAAGGAAAAAAAAAAAGGCTTAGAAGCCTTCTACTGACCAATTACCGCACAGCATTTTCCTAAGAGCTGATGCTTTGAAGTTATAGTTCAGTTTCATTTCATTTTTTAAGTCATACTTGTTAGATCAAGAAACTTTCCGAAGGAAAGATGTATGATGATATAGATTTTGAAGATTATTTGTTAAaaaaaaaa ] [+] EMBL CA999714 [ TGTAAAAGAAGATGCGACTGCATTCATGAAAGGTGCTATCTCAAGAAATGAGGTCTGGGACTTGGTAATCCTTGATCCTCCAAAGTTGGCACCTCGAAAAAAGGTGCTACAAAGTGCCTCGGGTATGTACAGAAGCTTGAACGCTCTTGCGATGCAAGTGGTAAAGCCAGGGGGGTTACTCATGACATGCTCATGCTCT GGAGCTA TGACCCAAAGCGGCCTCTT CCTCAGAA CCATTCAGGGTGCTGCATCAATGACCGGCCGAAAGGTTACAGTT CTACGCCAAGCAGGGGCAGCCTGTGATCAT CCCGTAGATCCTGCATACCCTGAAGGCCGATATCTCAGCAATTACTTGCTCCGAGTGACCTGAAGGAAAAAAAAAAAGGCTTAGAAGCCTTCTACTGACCAATTACCGCACAGCATTTTCCTAAGAGCTGATGCTTTGAAGTTATAGTTCAGTTTCATTTCATTTTTTAAGTCATACTTGTTAGATCAAGAAACTTTCCGAAGGAAAGATGTATGATGATATAGATTTTGAAGATTATTTGTTAAaaaaaaaa ] [-] EMBL OSS14981A [ nCATGCTCTGGGAGCTATTNCCCCAAAGCGNCCTCTTCCCTAAGAACCCATTCAGGGTGCTGCATCAATGACCGNCCGAAAGGTTACAGTTCCTACGCCAAGCAGGGGCAGCCTGTGATCATCCCCGTAGATCCTGCATACCCTGAAGGCCGATATCTCAGCAATTACTTGCTCCGAGTGACCTGAAGGAAAAAAAAAAAGGCTTAGAAGCCTTCTACTGACCAATTACCGCACAGCATTTTCCTAAGAGCTGATGCTTTGAAGTTATAGTTCAGTTTCATTTCATTTTTTAAGTCATACTTGTTAGATCAAGAAACTTTCCGAAGGAAAGATGTATGATGATATAGATTTTGAAGATTATTTGTTAATTTCTAGCGCAGATCATTATTTACCCTTGTTGAGATTAACGTTTTTAACACTTTTTTATATATGGAATATGGAAGA TGTG ] consensusID : consensus_13409#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 776 fasta sequence [GCAGCAGAATTTTGAATCATAGTATTTTGCTTCAAAAGAAATAAAGAAATTAAGTAAGGAGCATGTCTTAGATATACCTATTTTAGAGGAAGTCATGCGCTTTATGGGTACTTAAAACTTTAGATGGGTGAACAAGTCAAATAGAACCTCTTTATAAGACCAGACGGAATCAAATAGAACCTCTTTATAAGACCAGACGGAGGATCTGGTTCCAGTTTACCAGGTGTTTACCAGAAGCAAAAAACCATTGGTTTTCTGAAACTTGAGCTTGCTAGTGCTCTACTTTTAGTAACTGCTTCGATTATTATCTGTCCTGTTGTATTTAGGTGCTACAAAGTGCCTCGGGTATGTACAGAAGCTTGAACGCTCTTGCGATGCAAGTGGTAAAGCCAGGGGGGTTACTCATGACATGCTCATGCTCTGGAGCTATGACCCAAAGCGGCCTCTTCCTCAGAACCATTCAGGGTGCTGCATCAATGACCGGCCGAAAGGTTACAGTTTTACGCCAAGCAGGGGCAGCCTGTGATCATCCCGTAGATCCTGCATACCCTGAAGGCCGATATCTCAGCAATTACTTGCTCCGAGTGACCTGAAGGAAAAAAAAAAAGGCTTAGAAGCCTTCTACTGACCAATTACCGCACAGCATTTTCCTAAGAGCTGATGCTTTGAAGTTATAGTTCAGTTTCATTTCATTTTTTAAGTCATACTTGTTAGATCAAGAAACTTTCCGAAGGAAAGATGTATGATGATATAGATTTTGAAGATTATTTGTTAAT] [-] EMBL CB655263 [GCAGCAGAATTTTGAATCATAGTATTTTGCTTCAAAAGAAATAAAGAAATTAAGTAAGGAGCATGTCTTAGATATACCTATTTTAGAGGAAGTCATGCGCTTTATGGGTACTTAAAACTTTAGATGGGTGAACAAGTCAAATAGAACCTCTTTATAAGACCAGACGGAATCAAATAGAACCTCTTTATAAGACCAGACGGAGGATCTGGTTCCAGTTTACCAGGTGTTTACCAGAAGCAAAAAACCATTGGTTTTCTGAAACTTGAGCTTGCTAGTGCTCTACTTTTAGTAACTGCTTCGATTATTATCTGTCCTGTTGTATTTAGGTGCTACAAAGTGCCTCGGGTATGTACAGAAGCTTGAACGCTCTTGCGATGCAAGTGGTAAAGCCAGGGGGGTTACTCATGACATGCTCATGCTCTGGAGCTATGACCCAAAGCGGCCTCTTCCTCAGAACCATTCAGGGTGCTGCATCAATGACCGGCCGAAAGGTTACAGTTTTACGCCAAGCAGGGGCAGCCTGTGATCATCCCGTAGATCCTGCATACCCTGAAGGCCGATATCTCAGCAATTACTTGCTCCGAGTGACCTGAAGGAAAAAAAAAAAGGCTTAGAAGCCTTCTACTGACCAATTACCGCACAGCATTTTCCTAAGAGCTGATGCTTTGAAGTTATAGTTCAGTTTCATTTCATTTTTTAAGTCATACTTGTTAGATCAAGAAACTTTCCGAAGGAAAGATGTATGATGATATAGATTTTGAAGATTATTTGTTAAT] consensusID : consensus_13409#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 736 fasta sequence [TTTTGCTTTAAATGCAGCAAAGGGTGGTGCTAATAATGTCATTGGCATTGATTCATCAGCATCAGCACTAGACCTTGCCAATAAGAATATTATCTTGAATAAGCTTGACACCCAAAGGATTTCGTTTGTAAAAGAAGATGCGACTGCATTCATGAAAGGTGCTATCTCAAGAAATGAGGTTTGGGACTTGGTAATCCTTGATCCTCCAAAGTTGGCACCTCGAAAAAAGGTGCTACAAAGTGCCTCGGGTATGTACAGAAGCTTGAACGTTCTTGCGATGCAAGTGGTAAAGCCAGGGGGGTTACTCATGACATGTTCATGCTCTGGAGATATGACCCAAAGCGGCTTTTTCTTCAGAACCATTCAGGGTGTTGCATCAATGACCGGCCGAAAGGTTACAGTTTTACGCCAAGCAGGGGCAGCCTGTGATCATCCCGTAGATCCTGCATACCCTGAAGGCCGATATTTCAGCAATTACTTGTTCCGAGTGACCTGAAGGAAAAAAAAAAAGGTTTAGAAGCCTTTTATTGACCAATTACCGCACAGCATTTTCTTAAGAGCTGATGCTTTGAAGTTATAGTTCAGTTTCATTTCATTTTTTAAGTCATACTTGTTAGATCAAGAAACTTTCCGAAGGAAAGATGTATGATGATATAGATTTTGAAGATTATTTGTTAATTTCTAGCGCAGATCATTATTTACCCGCCGCCGCAGGAGACGCGCCGCCGCAGGCGCG] [-] EMBL CB649821 [TTTTGCTTTAAATGCAGCAAAGGGTGGTGCTAATAATGTCATTGGCATTGATTCATCAGCATCAGCACTAGACCTTGCCAATAAGAATATTATCTTGAATAAGCTTGACACCCAAAGGATTTCGTTTGTAAAAGAAGATGCGACTGCATTCATGAAAGGTGCTATCTCAAGAAATGAGGTCTGGGACTTGGTAATCCTTGATCCTCCAAAGTTGGCACCTCGAAAAAAGGTGCTACAAAGTGCCTTGGGTATGTACAGAAGCTTGAACGCTCTTGCGATGCAAGTGGTAAAGCCAGGGGGGTTACTCATGACATGCTCATGCTCTGGAGGTATGACCCAAAGCGGCTTTTTCCTCAGAACCATTCAGGGTGCTGCATCAATGACCGGCCGAAAGGTTACAGTTTTACGCCAAGCAGGGGCAGCCTGTGATCATCCCGTAGATCCTGCATACCCTGAAGGCCGATATTTCAGCAATTACTTGCTCCGAGTGACCTGAAGGAAAAAAAAAAAGGCTTAGAAGCCTTTTACTGACCAATTACCGCACAGCATTTTCCTAAGAGCTGATGCTTTGAAGTTATAGTTCAGTTTCATTTCATTTTTTAAGTCATACTTGTTAGATCAAGAAACTTTCCGAAGGAAAGATGTATGATGATATAGATTTTGAAGATTATTTGTTAATTTCTAGCGCAGATCATTATTTACCCGCCGCCGCAGGAGACGCGCCGCCGCAGGCGCG] [-] EMBL CB674021 [ AAGGTGCTATCTCAAGAAATGAGGTTTGGGATTTGGTAATCCTTGATCTTCCAAAGTTGGCACCTCGAAAAAAGGTGCTACAAAGTGCCTCGGGTATGTAAAGAAGCTTGAACGTTTTTGTGATGCAAGTGGTAAAGCCAGGGGGGTTATTCATGACATGTTCATGTTTTGGAGATATGACCCAAAGCGGCTTTTTCTTTAGAACCATTCAGGGTGTTGCATCAATGACCGGCCGAAAGGTTACAGTTTTACGCCAAGCAGGGGCAGCCTGTGATCATCCCGTAGATCTTGCATACCCTGAAGGCCGATATTTCAGCAATTATTTGTTCCGAGTGACTTGAAGGAAAAAAAAAAAGGTTTAGAAGCCTTTTATTGACCAATTACCGCACAGCATTTTCTTAAGAGCTGATGCTTTGAAGTTATAGTTCAGTTTCATTTCATTTTTTAAGTCATACTTGTTAGATCAAGAAACTTTCTGAAGGAAAGATGTATGATGATATAGATTTTGAAGATTATTTGTTAATTTTTAGNGCAGATCc ] [-] EMBL CB663491 [ TTTGGGACTTGGTAATCCTTGATCCTCCAAAGTTGGCACCTCGAAAAAAGGTGTTACAAAGTGCCTCGGGTATGTATAGAAGTTTGAACGTTCTTGCGATGCAAGTGGTAAAGCCAGGGGGGTTACTCATGACATGTTCATGCTCTGGAGATATGACCCAAAGCGGCCTTTTCTTCAGAACCATTCAGGGTGTTGCATTAATGACCGGCCGAAAGGTTACAGTTTTACGCCAAGCAGGGGCAGCCTGTGATCATTCCGTAGATCCTGCATACCCTGAAGGCCGATATTTCAGCAATTACTTTTTTCGAGTGACCTGAAGGAAAAAAAAAAAGGTTTAGAAGCCTTTTATTGACCAATTACCGCACAGCATTTTCTTAAGAGCTGATGCTTTGAAGTTATAGTTCAGTTTCATTTC ] consensusID : consensus_13409#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 646 fasta sequence [ATCAGCACTAGACCTTGCCAATAAGAATATTATCCTGAATAAGCTTGACACCCAAAGGATTTCGTTTGTAAAAGAAGATGCGACTGCATTCATGAAAGGTGCTATCTCAAGAAATGAGGTCTGGGACTTGGTAATCCTTGATCCTCCAAAGTTGGCACCTCGAAAAAAGGTGCTACAAAGTGCCTCGGGTATGTACAGAAGCTTGAACGCTCTTGCGATGCAAGTGGTAAAGCCAGGGGGGTTACTCATGACATGCTCATGCTCTGGAGCTATGACCCAAAGCGGCCTCTTCCTCAGAACCATTCAGGGTGCTGCATCAATGACCGGCCGAAAGGTTACAGTTTTACGCCAAGCAGGGGCAGCCTGTGATCATCCCGTAGATCCTGCATACCCTGAAGGCCGATATTTCAGCAATTACTTGCTCCGAGTGACCTGAAGGAAAAAAAAAAAGGCTTAGAAGCCTTTTACTGACCAATTACCGCACAGCATTTTCCTAAGAGCTGATGCTTTGAAGTTATAGTTCAGTTTCATTTCATTTTTTAAGTCATACTTGTTAGATCAAGAAACTTTCCGAAGGAAAGATGTATGATGATATAGATTTGGAAGATCTATTTGTTACTTTGTAGCGCAAACAAACAAAAAGGGG] [-] EMBL CB648015 [ATCAGCACTAGACCTTGCCAATAAGAATATTATCCTGAATAAGCTTGACACCCAAAGGATTTCGTTTGTAAAAGAAGATGCGACTGCATTCATGAAAGGTGCTATCTCAAGAAATGAGGTCTGGGACTTGGTAATCCTTGATCCTCCAAAGTTGGCACCTCGAAAAAAGGTGCTACAAAGTGCCTCGGGTATGTACAGAAGCTTGAACGCTCTTGCGATGCAAGTGGTAAAGCCAGGGGGGTTACTCATGACATGCTCATGCTCTGGAGCTATGACCCAAAGCGGCCTCTTCCTCAGAACCATTCAGGGTGCTGCATCAATGACCGGCCGAAAGGTTACAGTTTTACGCCAAGCAGGGGCAGCCTGTGATCATCCCGTAGATCCTGCATACCCTGAAGGCCGATATTTCAGCAATTACTTGCTCCGAGTGACCTGAAGGAAAAAAAAAAAGGCTTAGAAGCCTTTTACTGACCAATTACCGCACAGCATTTTCCTAAGAGCTGATGCTTTGAAGTTATAGTTCAGTTTCATTTCATTTTTTAAGTCATACTTGTTAGATCAAGAAACTTTCCGAAGGAAAGATGTATGATGATATAGATTTGGAAGATCTATTTGTTACTTTGTAGCGCAAACAAACAAAAAGGGG] consensusID : consensus_13409#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 300 fasta sequence [GGTGCTGAATCAATGACCGGCGGAAAGGTTACAGTTTTACGCCAAGCAGGGGCAGCCTGTGATCATCCGGTAGATCCTGCATACCTTGAAGGCGGATATTTCAGCAATTACTTGTTCCGAGTGACTTGAAGGAAAAAAAAAAAGGTTTAGAAGCTTTTTACTGACCAATTACCGCACAGCATTTTCATAAGAGTTGATGCTTTGAAGTTATAGTTCAGTTTCATTTCATTTTTTAAGTCATACTTGTTAGATCAAGAAATTTTCTGAAGGAAAAACGCCGCCGCCGGTGAAGGGCCGCCG] [-] EMBL CB648014 [GGTGCTGAATCAATGACCGGCGGAAAGGTTACAGTTTTACGCCAAGCAGGGGCAGCCTGTGATCATCCGGTAGATCCTGCATACCTTGAAGGCGGATATTTCAGCAATTACTTGTTCCGAGTGACTTGAAGGAAAAAAAAAAAGGTTTAGAAGCTTTTTACTGACCAATTACCGCACAGCATTTTCATAAGAGTTGATGCTTTGAAGTTATAGTTCAGTTTCATTTCATTTTTTAAGTCATACTTGTTAGATCAAGAAATTTTCTGAAGGAAAAACGCCGCCGCCGGTGAAGGGCCGCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13409#0 GTAGCTGATGGGGCAGAGAAACCTATTGGATGGGGTCTCTATAACTCTGTGTCCATGTTT 60 consensus_13409#2 ------------------------------------------------------------ consensus_13409#3 ------------------------------------------------------------ consensus_13409#4 ------------------------------------------------------------ consensus_13409#1 ------------------------------------------------------------ consensus_13409#0 TGTGTTCGGCTGATGCAACTAGAAGAAGAGGCAAAAAGGGATCCAACATGTGCACTAAAT 120 consensus_13409#2 ------------------------------------------------------------ consensus_13409#3 ------------------------------------------------------------ consensus_13409#4 ------------------------------------------------------------ consensus_13409#1 ------------------------------------------------------------ consensus_13409#0 ATGGAAAGACTGCTTGAGGCAAGGATTTTATCTGCTGTGGATTTACGGCGCAGTTTAGGT 180 consensus_13409#2 ------------------------------------------------------------ consensus_13409#3 ------------------------------------------------------------ consensus_13409#4 ------------------------------------------------------------ consensus_13409#1 ------------------------------------------------------------ consensus_13409#0 CTCCCTTCAGTTCACACAAATGCTTATCGTCTCATCAACAGTGAAGGGGACAGATTGTCT 240 consensus_13409#2 ------------------------------------------------------------ consensus_13409#3 ------------------------------------------------------------ consensus_13409#4 ------------------------------------------------------------ consensus_13409#1 ------------------------------------------------------------ consensus_13409#0 GGTCTAATAGTGGATATCTTTGCTGATGTCGCTGTAGTTGCTTCATCTGCTGCTTGGGTT 300 consensus_13409#2 ------------------------------------------------------------ consensus_13409#3 ------------------------------------------------------------ consensus_13409#4 ------------------------------------------------------------ consensus_13409#1 ------------------------------------------------------------ consensus_13409#0 GAGAAATATAGGCATGAAATCCAGTTCCTTGTTAACAAAGTCAGTGATGTGAACCATATA 360 consensus_13409#2 ------------------------------------------------------------ consensus_13409#3 ------------------------------------------------------------ consensus_13409#4 ------------------------------------------------------------ consensus_13409#1 ------------------------------------------------------------ consensus_13409#0 AAGTGGAGATCATCAACAGATATTCTAAAAGAAGAAGGATTAGATGTATCAGAACAAAAG 420 consensus_13409#2 ------------------------------------------------------------ consensus_13409#3 ------------------------------------------------------------ consensus_13409#4 ------------------------------------------------------------ consensus_13409#1 ------------------------------------------------------------ consensus_13409#0 GATCCTGAATCGTCTTCACACTGTGGAACAGTGGAGGTCATGGAGAATGATGTTCTCTAT 480 consensus_13409#2 ------------------------------------------------------------ consensus_13409#3 ------------------------------------------------------------ consensus_13409#4 ------------------------------------------------------------ consensus_13409#1 ------------------------------------------------------------ consensus_13409#0 CTAGTCTCATTGGAGGGGCAGAAAACAGGGTTTTATGCAGATCAACGTGAGAACCGTCAT 540 consensus_13409#2 ------------------------------------------------------------ consensus_13409#3 ------------------------------------------------------------ consensus_13409#4 ------------------------------------------------------------ consensus_13409#1 ------GCAGCAGAATTTTGAATCATAGTATTTTGCTTCAAAAGAAATAAAGAAATTAAG 54 consensus_13409#0 TTCATATCAACACTCTCAAAGGACCAAAGGGTTCTTGATCTGTGCTGCTATAGTGGTGGT 600 consensus_13409#2 -----------------------------------------------------------T 1 consensus_13409#3 ------------------------------------------------------------ consensus_13409#4 ------------------------------------------------------------ consensus_13409#1 TAAGGAGCA-TGTCTTAGATATACCTATTTTAGAGGAAGTCATGCGCTTTATGGGTACTT 113 consensus_13409#0 TTTGCTCTAAATGCAGCAAAGGGTGGTGCTAATAATGTCATTGGCATTGATTCATCAGCA 660 consensus_13409#2 TTTGCTTTAAATGCAGCAAAGGGTGGTGCTAATAATGTCATTGGCATTGATTCATCAGCA 61 consensus_13409#3 -----------------------------------------------------------A 1 consensus_13409#4 ------------------------------------------------------------ consensus_13409#1 AAAACTTTAGATGGGTGAACAAGT----CAAATAGAACCTCTTTATAAGACCAGACGGAA 169 consensus_13409#0 TCAGCACTAGACCTTGCCAATAAGAATATTATCCTGAATAAGCTTGACACCCAAAGGATT 720 consensus_13409#2 TCAGCACTAGACCTTGCCAATAAGAATATTATCTTGAATAAGCTTGACACCCAAAGGATT 121 consensus_13409#3 TCAGCACTAGACCTTGCCAATAAGAATATTATCCTGAATAAGCTTGACACCCAAAGGATT 61 consensus_13409#4 ------------------------------------------------------------ consensus_13409#1 TCA--AATAGAACCTCTTTATAAGACCAGACGGAGGATCTGGTTCCAGTTTACCAGGTGT 227 consensus_13409#0 TCGTTTGTAAAAGAAGATGCGACTGCATTCATGAAAGGTGCTATCTCAAGAAATG-AGGT 779 consensus_13409#2 TCGTTTGTAAAAGAAGATGCGACTGCATTCATGAAAGGTGCTATCTCAAGAAATG-AGGT 180 consensus_13409#3 TCGTTTGTAAAAGAAGATGCGACTGCATTCATGAAAGGTGCTATCTCAAGAAATG-AGGT 120 consensus_13409#4 ------------------------------------------------------------ consensus_13409#1 TTACCAG--AAGCAAAAAACCATTGGTTTTCTGAAACTTGAGCTTGCTAGTGCTCTACTT 285 consensus_13409#0 CTGGGACTTGGTAATCCTTGATCCTCCAAAGTTGGCACCTCGAAAAAAGGTGCTACAAAG 839 consensus_13409#2 TTGGGACTTGGTAATCCTTGATCCTCCAAAGTTGGCACCTCGAAAAAAGGTGCTACAAAG 240 consensus_13409#3 CTGGGACTTGGTAATCCTTGATCCTCCAAAGTTGGCACCTCGAAAAAAGGTGCTACAAAG 180 consensus_13409#4 ------------------------------------------------------------ consensus_13409#1 TTAGTAACTG-----CTTCGATTATT---ATCTGTCCTGTTGTATTTAGGTGCTACAAAG 337 consensus_13409#0 TGCCTCGGGTATGTACAGAAGCTTGAACGCTCTTGCGATGCAAGTGGTAAAGCCAGGGGG 899 consensus_13409#2 TGCCTCGGGTATGTACAGAAGCTTGAACGTTCTTGCGATGCAAGTGGTAAAGCCAGGGGG 300 consensus_13409#3 TGCCTCGGGTATGTACAGAAGCTTGAACGCTCTTGCGATGCAAGTGGTAAAGCCAGGGGG 240 consensus_13409#4 ------------------------------------------------------------ consensus_13409#1 TGCCTCGGGTATGTACAGAAGCTTGAACGCTCTTGCGATGCAAGTGGTAAAGCCAGGGGG 397 consensus_13409#0 GTTACTCATGACATGCTCATGCTCTGGAGCTATGACCCAAAGCGGCCTCTTCCTCAGAAC 959 consensus_13409#2 GTTACTCATGACATGTTCATGCTCTGGAGATATGACCCAAAGCGGCTTTTTCTTCAGAAC 360 consensus_13409#3 GTTACTCATGACATGCTCATGCTCTGGAGCTATGACCCAAAGCGGCCTCTTCCTCAGAAC 300 consensus_13409#4 ------------------------------------------------------------ consensus_13409#1 GTTACTCATGACATGCTCATGCTCTGGAGCTATGACCCAAAGCGGCCTCTTCCTCAGAAC 457 consensus_13409#0 CATTCAGGGTGCTGCATCAATGACCGGCCGAAAGGTTACAGTTCTACGCCAAGCAGGGGC 1019 consensus_13409#2 CATTCAGGGTGTTGCATCAATGACCGGCCGAAAGGTTACAGTTTTACGCCAAGCAGGGGC 420 consensus_13409#3 CATTCAGGGTGCTGCATCAATGACCGGCCGAAAGGTTACAGTTTTACGCCAAGCAGGGGC 360 consensus_13409#4 -------GGTGCTGAATCAATGACCGGCGGAAAGGTTACAGTTTTACGCCAAGCAGGGGC 53 consensus_13409#1 CATTCAGGGTGCTGCATCAATGACCGGCCGAAAGGTTACAGTTTTACGCCAAGCAGGGGC 517 **** ** ************* ************** **************** consensus_13409#0 AGCCTGTGATCATCCCGTAGATCCTGCATACCCTGAAGGCCGATATCTCAGCAATTACTT 1079 consensus_13409#2 AGCCTGTGATCATCCCGTAGATCCTGCATACCCTGAAGGCCGATATTTCAGCAATTACTT 480 consensus_13409#3 AGCCTGTGATCATCCCGTAGATCCTGCATACCCTGAAGGCCGATATTTCAGCAATTACTT 420 consensus_13409#4 AGCCTGTGATCATCCGGTAGATCCTGCATACCTTGAAGGCGGATATTTCAGCAATTACTT 113 consensus_13409#1 AGCCTGTGATCATCCCGTAGATCCTGCATACCCTGAAGGCCGATATCTCAGCAATTACTT 577 *************** **************** ******* ***** ************* consensus_13409#0 GCTCCGAGTGACCTGAAGGAAAAAAAAAAAGGCTTAGAAGCCTTCTACTGACCAATTACC 1139 consensus_13409#2 GTTCCGAGTGACCTGAAGGAAAAAAAAAAAGGTTTAGAAGCCTTTTATTGACCAATTACC 540 consensus_13409#3 GCTCCGAGTGACCTGAAGGAAAAAAAAAAAGGCTTAGAAGCCTTTTACTGACCAATTACC 480 consensus_13409#4 GTTCCGAGTGACTTGAAGGAAAAAAAAAAAGGTTTAGAAGCTTTTTACTGACCAATTACC 173 consensus_13409#1 GCTCCGAGTGACCTGAAGGAAAAAAAAAAAGGCTTAGAAGCCTTCTACTGACCAATTACC 637 * ********** ******************* ******** ** ** ************ consensus_13409#0 GCACAGCATTTTCCTAAGAGCTGATGCTTTGAAGTTATAGTTCAGTTTCATTTCATTTTT 1199 consensus_13409#2 GCACAGCATTTTCTTAAGAGCTGATGCTTTGAAGTTATAGTTCAGTTTCATTTCATTTTT 600 consensus_13409#3 GCACAGCATTTTCCTAAGAGCTGATGCTTTGAAGTTATAGTTCAGTTTCATTTCATTTTT 540 consensus_13409#4 GCACAGCATTTTCATAAGAGTTGATGCTTTGAAGTTATAGTTCAGTTTCATTTCATTTTT 233 consensus_13409#1 GCACAGCATTTTCCTAAGAGCTGATGCTTTGAAGTTATAGTTCAGTTTCATTTCATTTTT 697 ************* ****** *************************************** consensus_13409#0 TAAGTCATACTTGTTAGATCAAGAAACTTTCCGAAGGAAAGATGTA--TGATGATATAGA 1257 consensus_13409#2 TAAGTCATACTTGTTAGATCAAGAAACTTTCCGAAGGAAAGATGTA--TGATGATATAGA 658 consensus_13409#3 TAAGTCATACTTGTTAGATCAAGAAACTTTCCGAAGGAAAGATGTA--TGATGATATAGA 598 consensus_13409#4 TAAGTCATACTTGTTAGATCAAGAAATTTTCTGAAGGAAAAACGCCGCCGCCGGTGAAGG 293 consensus_13409#1 TAAGTCATACTTGTTAGATCAAGAAACTTTCCGAAGGAAAGATGTA--TGATGATATAGA 755 ************************** **** ******** * * * * * ** consensus_13409#0 TTTTGAAGAT-TATTTGTTAATTTCTAGCGCAGATCATTATTTACCC-TTGTTGAGATTA 1315 consensus_13409#2 TTTTGAAGAT-TATTTGTTAATTTCTAGCGCAGATCATTATTTACCCGCCGCCGCAGGAG 717 consensus_13409#3 TTTGGAAGATCTATTTGTTACTTTGTAGCGCAAACAAACAAAAAGGGG------------ 646 consensus_13409#4 GCCGCCG----------------------------------------------------- 300 consensus_13409#1 TTTTGAAGAT-TATTTGTTAAT-------------------------------------- 776 consensus_13409#0 ACGTTTTTAACACTTTTTTATATATGGAATATGGAAGATGTGTAAATCATAAAAAAGG 1373 consensus_13409#2 ACG-------CGCCGCCGCAGGCGCG-------------------------------- 736 consensus_13409#3 ---------------------------------------------------------- consensus_13409#4 ---------------------------------------------------------- consensus_13409#1 ---------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||