These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13432#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1148 fasta sequence [AGTTCAAACTGACAGCGGAGCG-GA-GAAGCGTCGGAGGAGATGGAGGTTGCGACGGCGACGGAGGCGTCGGCGCCGGCGGCGA-GCAGGCGGAGCCAC-CCGTTCCCGTGGCTAGACCTGGCCATCTCCGAGCCCTACTACTTCCTCCACCTCGTCGCCTTCTTCTCCTACTTCGCGGCCCGCAGCACGGTGCCCTCGGCCGACGACGGCCTCCTCCTCCGCCGGGAGATCCAGGCGGTGCTCACGTTCCTCGTGCTCTTCGTCGTGAAGATCGTGAAAGAGGAAAACTGGGAAACATGCATTGCTGATTCACTGCTCTATGCTAAGGGATTATTGCTGGCAGTTACTTTGGTTATCGATTATTGGCTGACTGTCTCCTACTTAC-TGGGATTTGTTGTTATATATGCTGTTGCTC-AACAG-CCACCTTAT-GAT-GGTCTTGGTCATTCAAATCATTTGACTCCATTGCAACTGG-AAGGCCTACTAACGGAGGAGCCAACAACAC-GATTTTGGCTGGTTGAATTCCGGACTTCCTTTTCAGGAACATGTATAGAAGCAAGCAGTGTTCTGCCTGAACTCTCTAACATATACTCTAACAAGAACATTTCGTTTGGAATAATTGATCTTGGGCATTTTCCAAATGCTGCAGCAAAGTTTGGAATATCCATGTGGGATCATCTTCCCACTTATATACTCTTTGACAAGGCCACTGAAGTTGCACGATTCCCAGAAATCATGAATGAATCAAAAGTATTTGTGCCAAAAATTACAAAGAAACTTCTCTGCCAGCACTTC-GACCTTGA-CAGGCGACT-GATTGAATACCT-AT-CTAGATGACCCA-TCATCTATCCCAGCTGTCT-CAAAAAG-AAAGCG-CCAATTCCCTTTTGTCGACGAACCAGATGAATGAACCGGACAGTTGTGCGGCAGCAATCACTTCAGGGGGTATCTTCAAGCTTGTTTTATTCTATGAGTTTACTTGTACCCATCCAATCAAGGACAGTATACTTTAGGGTAGGGTGGGGGTGGGCAGGATTATGATTTGCATCTTACTACCATATGTCACCTCTTGAATTACGGAATGTTACCACACCTGTGGAGATCTTGCAATGATATGCCAACTATGTTTTCCACTGCAAAAAAAAATCAATTCAGACACC] [+] EMBL AK070272 [AGTTCAAACTGACAGCGGAGCG GA GAAGCGTCGGAGGAGATGGAGGTTGCGACGGCGACGGAGGCGTCGGCGCCGGCGGCGA GCAGGCGGAGCCAC CCGTTCCCGTGGCTAGACCTGGCCATCTCCGAGCCCTACTACTTCCTCCACCTCGTCGCCTTCTTCTCCTACTTCGCGGCCCGCAGCACGGTGCCCTCGGCCGACGACGGCCTACTCCTCCGCCGGGAGATCCAGGCGGTGCTCACGTTCCTCGTGCTCTTCGTCGTGAAGATCGTGAAAGAGGAAAACTGGGAAACATGCATTGCTGATTCACTGCTCTATGCTAAGGGATTATTGCTGGCAGTTACTTTGGTTATCGATTATTGGCTGACTGTCTCCTACTTAC TGGGATTTGTTGTTATATATGCTGTTGCTC AACAG CCACCTTAT GAT GGTCTTGGTCATTCAAATCATTTGACTCCATTGCAACTGG AAGGCCTACTAACGGAGGAGCCAACAACAC GATTTTGGCTGGTTGAATTCCGGACTTCCTTTTCAGGAACATGTATAGAAGCAAGCAGTGTTCTGCCTGAACTCTCTAACATATACTCTAACAAGAACATTTCGTTTGGAATAATTGATCTTGGGCATTTTCCAAATGCTGCAGCAAAGTTTGGAATATCCATGTGGGATCATCTTCCCACTTATGTACTCTTTGACAAGGCCACTGAAGTTGCACGATTCCCAGAAATCATGAATGAATCAAAAGTATTTGTGCCAAAAATTACAAAGAAACTTCTCTGCCAGCACTTC GACCTTGA CAGGCGACT GATTGAATACCT AT CTAGATGACCCA TCATCTATCCCAGCTGTCT CAAAAAG AAAGCG CCAATTCCCTTTTGTCGACGAACCAGATGAATGAACCGGACAGTTGTGCGGCAGCAATCACTTCAGGGGGTATCTTCAAGCTTGTTTTATTCTATGAGTTTACTTGTACCCATCCAATCAAGGACAGTATACTTTAGGGTAGGGTGGGGGTGGGCAGGATTATGATTTGCATCTTACTACCATATGTCACCTCTTGAATTACGGAATGTTACCACACCTGTGGAGATCTTGCAATGATATGCCAACTATGTTTTCCACTGCAGTTAGTGATCAATTCAGACACC] [+] EMBL OSC103651 [ TCAAACTGACAGCGGA CGTNANGAAGCGTCGGAGGAGATGGAGGTTGCGACGGCGACGGAGGCGTCGGCGCCGGCGG GANNCAGGCGGAG CACNCCGTTCCCGTGGCTAGACCTGGCCATCTCCGAGCCCTACTACTTCCTCCACCTCGTCGCCTTCTTCTCCTACTTCGCGGCCCGCAGCACGGTGCCCTCGG ] [+] EMBL AK104558 [ GCGGAGCG GA GAAGCGTCGGAGGAGATGGAGGTTGCGACGGCGACGGAGGCGTCGGCGCCGGCGGCGA GCAGGCGGAGCCAC CCGTTCCCGTGGCTAGACCTGGCCATCTCCGAGCCCTACTACTTCCTCCACCTCGTCGCCTTCTTCTCCTACTTCGCGGCCCGCAGCACGGTGCCCTCGGCCGACGACGGCCTCCTCCTCCGCCGGGAGATCCAGGCGGTGCTCACGTTCCTCGTGCTCTTCGTCGTGAAGATCGTGAAAGAGGAAAACTGGGAAACATGCATTGCTGATTCACTGCTCTATGCTAAGGGATTATTGCTGGCAGTTACTTTGGTTATCGATTATTGGCTGACTGTCTCCTACTTAC TGGGATTTGTTGTTATATATGCTGTTGCTC AACAG CCACCTTAT GAT GGTCTTGGTCATTCAAATCATTTGACTCCATTGCAACTGG AAGGCCTACTAACGGAGGAGCCAACAACAC GATTTTGGCTGGTTGAATTCCGGACTTCCTTTTCAGGAACATGTATAGAAGCAAGCAGTGTTCTGCCTGAACTCTCTAACATATACTCTAACAAGAACATTTCGTTTGGAATAATTGATCTTGGGCATTTTCCAAATGCTGCAGCAAAGTTTGGAATATCCATGTGGGATCATCTTCCCACTTATATACTCTTTGACAAGGCCACTGAAGTTGCACGATTCCCAGAAATCATGAATGAATCAAAAGTATTTGTGCCAAAAATTACAAAGAAACTTCTCTGCCAGCACTTC GACCTTGA CAGGCGACT GATTGAATACCT AT CTAGATGACCCA TCATCTATCCCAGCTGTCT CAAAAAG AAAGCG CCAATTCCCTTTTGTCGACGAACCAGATGAATGAACCGGACAGTTGTGCGGCAGCAATCACTTCAGGGGGTATCTTCAAGCTTGTTTTATTCTATGAGTTTACTTGTACCCATCCAATCAAGGACAGTATACTTTAGGGTAGGGTGGGGGTGGGCAGGATTATGATTTGCATCTTACTACCATATGTCACCTCTTGAATTACGGAATGTTACCACACCTGTGGAGATCTTGCA ] [+] EMBL OSS1846A [ GACGGCGACGGAGGCGTCGGCGCCGGCGG GA GCAGGCGGA NCAC CCGTTCCCGTGGCTAGACCTGGCCATCTCCGAGCCCTACTACTTCCTCCACCTCGTCGCCTTCTTCTCCTACTTCGCGGCCCGCAGCACGGTGCCCTCGGCCGACGACGGCCTCCTCCTCCGCCG GGCGGTGCTCACGTTCCTCGTGCTCTTCGTCGTGAAGATCGTGAAANAGGAAAACTGGGAAACATGCATTGCTGATTCACTGCTCTATGCTAAGGGATTATTGCTGGCAGTTACTTTGGTTATCGATTATTGGCTGACTGTCTCCTACTTAC TGGGATTTGTTGTTATATATGCTGTTGCT AACAG CCACCTTAT GAT GGTCTTGGTAATTCAAAT ] [+] EMBL C91794 [ GCGACGGAGGCGTCGGCGCCGGCGGGAA GCAGGCGGA CCAC CCGTTCCCGTNGCTAGACCTGGCCATCTCCGAGCCCTACTACTTCCTCCACNTCGTCGCCTTCTTCTCCTACTTCGCGGCCCGCAGCACGGTGCCCTCGGCCGACGACGGCCTCCTCCTCCGCCGGGAGATCCAGGCGGTGCTCACGTTCCTCGTGCTCTTCGTCGTGAAGATCGTNAAANAGGAAAACTGGGAAACATGCATTGCTGAATCACTGCTCTATGCTAAGGGATTATTGCTGGCAGTTACTTTGGTTATCGATTATTGGCTGACTGTCTCCTACTTACTTGGGA ] [+] EMBL AU097072 [ TTGCTCAAACAGCCCACCTTATGGATGGGTCTTGGTCATTCAAATCATTTGACCCNATTGCAACTGGNAAGGCTTACTAACGGAGGAGCNAACAACACGGATTTTGGCTGGTTGAATTCCGGACTTCNTTTTCAGGAACATGTATAGAGGCAAGCAGTGTTCTGCCTG ACTCTCTAACATATACTCTAACAAGAACATTTCGTTTGGAATAATTGCTCTTGGNCATTTTCCAAATGCTGCAGCAAAGTTTGGAATATCCATGTGGGATCATCTTCCCACTTATATACTCTTTGACAAGGCCACTGAAGTNGCACGATTCCCAGAAATCATGAATGAATCAAAAGTATTTGTGCCAAAAATTACAAAGAAACTTCTCTGCCAGCACTTC GACCTTGA CAGGCGACT GATTGAATACCT AT CTAGATGACCCA TCATCTATCCCAGCTGTCT CAAAAAG AAAGCG CCAATTCCCTTTTGTCGACGAACCAGATGAATGAACCGGACAGTTGTGCGGCAGCAATCACTTCAGGGGGTATCTTCAAGCTTGTTTTATTCTATGAGTTTACTTGTACCCATCCAATCAAGGACAGTATACTTTAGGGTAGGGTGGGGGTGGGCAGGATTATGATTTGCATCTTACTACCATATGTCACCTCTTGAATTACGGAATGTTACCACACCTGTGGAGATCTTGCAATGATATGCCAACTATGTTTTCCACTGCAAAAAAAAA ] [+] EMBL AU197539 [ TTGACAAGGCCACTGAAGTTGCACGATTCCCAGAAATCATGAATGAATCAAAAGTATTTGTGCCAAAAATTACAAAGAAACTTCTCTGCCAGCACTTC GACCTTGA CAGGCGACT GATTGAATACCT AT CTAGATGACCCA TCATCTATCCCAGCTGTCT CAAAAAG AAAGCG CCAATTCCCTTTTGTCGACGAACCAGATGAATGAACCGGACAGTTGTGCGGCAGCAATCACTTCAGGGGGTATCTTCAAGCTTGTTTTATTCTATGAGTTTACTTGTACCCATCCAATCAAGGACAGTATACTTTAGGGTAGGGTGGGGGTGGGCAGGATTATGATTTGCATCTTACTACCATATGTCACCTCTTGAATTACGGAATGTTACCACACCTGTGGAGATCTTGCAATGATATGCCAAaaaaaa ] [+] EMBL OSS3602A [ AAGGCCACTGAAGTTGCACGATTCCCAGAAATCATGAATGANTCAAAAGTATTTGTGCCAAAAATTACAAAGAAACTTCTCTGCCAGCACTTC GACCTTGA CAGGCGACT GATTGANTACCT AT CTAGATGACCCA TCATCTATCCCAGCTGTCT CAAAAAG AAAGCG CCAATTCCCTTTTGTCGACGAACCAGATGAATGAACCGGACAGTTGTGCGGCAG AATCACTTCAGGGGGTATCTTCAAGCTTGTTTTATTCTATGAGTTTACTTGTACCCATCCAATCAAGGACAGTATACTTTAGGGTAGGGTGGGGGTGGGCAGGATTATGATTTGCATCTTACTACCATATGTCACCTCTTGAATTACGGAATGTTACCACACCTGTGGAGATCTTGCAATGATATGCCAACTATGNTTTCCACTGCAAAAAAAAAaaaa ] [+] EMBL OSS3088A [ AAGGCCACTGAAGTTGCACGATTCCCAGAAATCATGAATGAATCAAAAGTATTTGTGCCAAAAATTACAAAGAAACTTCTCTGCCAGCACTTC GACCTTGA CAGGCGACT GATTGAATACCT AT CTAGATGACCCA TCATCTATCCCAGCTGTCT CAAAAAG AAAGCG CCAATTCCCTTTTGTCGACGAACCAGATGAATGAACCGGACAGTTGTGCGGCAG AATCACTTCAGGGGGTATCTTCAAGCTTGTTTTATTCTATGAGTTTACTTGTACCCATCCAATCAAGGACAGTATACTTTAGGGTAGGGTGGGG ] [+] EMBL OSS4218A [ AAGGCCACTGAAGTTGCACGATTCCCAGAAATCATGAATGAATCAAAAGTATTTGTGCCAAAAATTACAAAGAAACTTCTCTGCCAGCACTTC GACCTTGA CAGGCGACT GATTGAATACCT AT CTAGATGACCCA TCATCTATCCCAGCTGTCT CAAAAAG AAAGCG CCAATTCCCTTTTGTCGACGAACCAGATGAATGAACCGGACAGTTGTGCGGCAG AATCACTTCAGGGGGTATCTTCAAGCTTGTTTTATTCTATGAGTTTACTTGTACCCATCCAATCAAGGACAGTATACTTTAGGGTAGGGTGGGGGTGGGCAGGATTATGATTTGCATCTTACTACCATATGTCACCTCTTGNATTACGGGATGTTACCACACCTGTGGAGNTCTTGCAATGNTATGCCAACTATG ] [+] EMBL AU108355 [ CTTCGGACCTGGACCAGGCGACTGGATTGAATACCTNATCCTAGATGACCCATTCATCTATCCCAGCTGTCTCCAAAAAGNAAAGCGCCCAATTCCCCTTTGTCGACGAACCAGATGAATGAACCGGACAGTTGTGCGGCAGCAATCACTTCAGGGGGTATCTTCAAGCTTGTTTTATTCTATGAGTTTACTTGTACCCATCCAATCAAGGACAGTATACTTTAGGGTAGGGTGGGGGTGGGCAGGATTATGATTTGCATCTTACTACCATATGTCACCTCTTGAATTACGGAATGTTACCACACCTGTGGAGATCTTGCAATGATATGCCAACTATGTTTTCCACTGCAAAAAAAA ] consensusID : consensus_13432#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 431 fasta sequence [TTGGCCACCTGAAGNTGCNCGATNNCCATAAATCATGAATGAATNAANAGNATTTAGTGCCANAAATTNCAAAGAAACTTGTCTGGCAGCACTTACGACCTTGACAGGCCGANTGATTGAATACCTATNTAGATGACCCATNATCTATCCAAGCTGTCTCAAAAAGAAAGCGCCAATTCCCTTTTGTCGACGAACCANATGAATGAACCGGACAGTTGAGCGGGAGCAATCACTTTAGGGGGTATCTTCAAGCTNGNTTTATTCTATGAGTTTACTTGNACCCATCCAATNAAGGACAGTATACTTTAGGGTAGGGTGGGGGTGGGCAGGATTATGATTTGCATCTTACTACCATATGTCACCTCTTGAATTACGGAATGTTACCACACCTGTGGAGATCTTGNAATGATAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU223011 [TTGGCCACCTGAAGNTGCNCGATNNCCATAAATCATGAATGAATNAANAGNATTTAGTGCCANAAATTNCAAAGAAACTTGTCTGGCAGCACTTACGACCTTGACAGGCCGANTGATTGAATACCTATNTAGATGACCCATNATCTATCCAAGCTGTCTCAAAAAGAAAGCGCCAATTCCCTTTTGTCGACGAACCANATGAATGAACCGGACAGTTGAGCGGGAGCAATCACTTTAGGGGGTATCTTCAAGCTNGNTTTATTCTATGAGTTTACTTGNACCCATCCAATNAAGGACAGTATA ] [+] EMBL AU166113 [ AGCTGTNTCAAAAAGAAAGCGCNAATTCCCTTTTGTCGACGAACCAGATGAATGAACCGGACAGTTGTGCGGCAGCAATCACTTCAGGGGGTATCTTCAAGCTTGTTTTATTCTATGAGTTTACTTGTACCCATCCAATCAAGGACAGTATACTTTAGGGTAGGGTGGGGGTGGGCAGGATTATGATTTGCATCTTACTACCATATGTCACCTCTTGAATTACGGAATGTTACCACACCTGTGGAGATCTTGNAATGATAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13432#0 AGTTCAAACTGACAGCGGAGCGGAGAAGCGTCGGAGGAGATGGAGGTTGCGACGGCGACG 60 consensus_13432#1 ------------------------------------------------------------ consensus_13432#0 GAGGCGTCGGCGCCGGCGGCGAGCAGGCGGAGCCACCCGTTCCCGTGGCTAGACCTGGCC 120 consensus_13432#1 ------------------------------------------------------------ consensus_13432#0 ATCTCCGAGCCCTACTACTTCCTCCACCTCGTCGCCTTCTTCTCCTACTTCGCGGCCCGC 180 consensus_13432#1 ------------------------------------------------------------ consensus_13432#0 AGCACGGTGCCCTCGGCCGACGACGGCCTCCTCCTCCGCCGGGAGATCCAGGCGGTGCTC 240 consensus_13432#1 ------------------------------------------------------------ consensus_13432#0 ACGTTCCTCGTGCTCTTCGTCGTGAAGATCGTGAAAGAGGAAAACTGGGAAACATGCATT 300 consensus_13432#1 ------------------------------------------------------------ consensus_13432#0 GCTGATTCACTGCTCTATGCTAAGGGATTATTGCTGGCAGTTACTTTGGTTATCGATTAT 360 consensus_13432#1 ------------------------------------------------------------ consensus_13432#0 TGGCTGACTGTCTCCTACTTACTGGGATTTGTTGTTATATATGCTGTTGCTCAACAGCCA 420 consensus_13432#1 ------------------------------------------------------------ consensus_13432#0 CCTTATGATGGTCTTGGTCATTCAAATCATTTGACTCCATTGCAACTGGAAGGCCTACTA 480 consensus_13432#1 ------------------------------------------------------------ consensus_13432#0 ACGGAGGAGCCAACAACACGATTTTGGCTGGTTGAATTCCGGACTTCCTTTTCAGGAACA 540 consensus_13432#1 ------------------------------------------------------------ consensus_13432#0 TGTATAGAAGCAAGCAGTGTTCTGCCTGAACTCTCTAACATATACTCTAACAAGAACATT 600 consensus_13432#1 ------------------------------------------------------------ consensus_13432#0 TCGTTTGGAATAATTGATCTTGGGCATTTTCCAAATGCTGCAGCAAAGTTTGGAATATCC 660 consensus_13432#1 ------------------------------------------------------------ consensus_13432#0 ATGTGGGATCATCTTCCCACTTATATACTCTTTGACAAGGCCAC-TGAAGTTGCACGATT 719 consensus_13432#1 ------------------------------------TTGGCCACCTGAAGNTGCNCGATN 24 ****** ***** *** **** consensus_13432#0 CCCAGAAATCATGAATGAATCAAAAGTATTT-GTGCCAAAAATTACAAAGAAACTTCTCT 778 consensus_13432#1 NCCATAAATCATGAATGAATNAANAGNATTTAGTGCCANAAATTNCAAAGAAACTTGTCT 84 *** *************** ** ** **** ****** ***** *********** *** consensus_13432#0 GCCAGCACTT-CGACCTTGACAGGC-GACTGATTGAATACCTATCTAGATGACCCATCAT 836 consensus_13432#1 GGCAGCACTTACGACCTTGACAGGCCGANTGATTGAATACCTATNTAGATGACCCATNAT 144 * ******** ************** ** *************** ************ ** consensus_13432#0 CTATCCCAGCTGTCTCAAAAAGAAAGCGCCAATTCCCTTTTGTCGACGAACCAGATGAAT 896 consensus_13432#1 CTATCCAAGCTGTCTCAAAAAGAAAGCGCCAATTCCCTTTTGTCGACGAACCANATGAAT 204 ****** ********************************************** ****** consensus_13432#0 GAACCGGACAGTTGTGCGGCAGCAATCACTTCAGGGGGTATCTTCAAGCTTGTTTTATTC 956 consensus_13432#1 GAACCGGACAGTTGAGCGGGAGCAATCACTTTAGGGGGTATCTTCAAGCTNGNTTTATTC 264 ************** **** *********** ****************** * ******* consensus_13432#0 TATGAGTTTACTTGTACCCATCCAATCAAGGACAGTATACTTTAGGGTAGGGTGGGGGTG 1016 consensus_13432#1 TATGAGTTTACTTGNACCCATCCAATNAAGGACAGTATACTTTAGGGTAGGGTGGGGGTG 324 ************** *********** ********************************* consensus_13432#0 GGCAGGATTATGATTTGCATCTTACTACCATATGTCACCTCTTGAATTACGGAATGTTAC 1076 consensus_13432#1 GGCAGGATTATGATTTGCATCTTACTACCATATGTCACCTCTTGAATTACGGAATGTTAC 384 ************************************************************ consensus_13432#0 CACACCTGTGGAGATCTTGCAATGATATGCCAACTATGTTTTCCACTGCAAAAAAAAATC 1136 consensus_13432#1 CACACCTGTGGAGATCTTGNAATGATAAAAAAAAAAAA-----------AAAAAAAAA-- 431 ******************* ******* ** * ********* consensus_13432#0 AATTCAGACACC 1148 consensus_13432#1 ------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||