These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13462#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1142 fasta sequence [ACACTAGCTCACACAGTGAGGTAGCATAGCTAGCTAAGCCAGCATGGTCTTTAAGAAGAACGCCATGTCTTCCTCGGTTCTCTTCCTCGCCGCGCTGCTGCTGCTCTCGTCCAGCTCCATGAGCAGCGC-GGCAC-GGTGGCTCGAGGAGGAGTACCCGCCGCACCCCACCGTGCCGGAGTTACCCAAGCCGGAGGTGCCGCCGCACCCCGCCGTGCCGGAGCT-GCCCAAGCATGAGGAGCCGCCGCACCCCGTCGTGCCGGAGTTGCCCAAGCACGAAGAGCCGCCTCACCCCGTCGTACCGGAGCTTCCCAAACCTGAGCTGCCGCCACACCCCGTCGTGCCGGAGTTGCCAAAGCACGAAGAGCCACCACACCCCGCCGTCGTGCCGGAGTTGCCCAAGCACGAAGAGCCGCCGCACCCTGCCGTCGTGCCGGAGTTTCCCAAGCACGAGGAGCCACCACACCCTGCCGTGCCGGAGCTGCCACACCCAGCTGTGCCGGAGATACCGCACCCAGCCGTGCCGGAGCTTCCCAAGCACGAGGAGCCGCCACACCCCGTCGTGCCGGAGCTGCCAAAGCCGGAGGTGCCACACGCCGCCGTGCCGGAGTTGCCCAAACCTGAGCTGCCGCCACACCCCGCCGTGCCGGAGCTGCCTAAGCACGAAGAGCCGCCGCACCCTGTCGTGCCGGAGCTGCCCAAGCACGAGGAGCCGCCGCACCCCGTCGTGCCGGAGCTGCC-GAAGCCTGAAGAGCCGCACCACCCCG-AGGTGCCGGAGCATGAACAGCCGCCGAAGCCTGAGAGCCATTACCCCGAGGTGCCGATGGCCAAGCCATGATCGGATGGCGATGCAGAGATTATTGATCGGGCCCATCATATCGCATCCTGAATAATCATGGGTTTATTTGTATATGTGTGTATGATATGATCATGTAAACTGTGGTGTTTGCTAGGAATGTGTGAGTGATGCTT-GATGTTTCAGCCATCCAGTTGTTCTTGTTCTTGGAGGATGTACTTGCGTGTGCTACGCTTATATCTATGCACACATC-ATCTACCCATGTACCATATATGCTTCATTAATTTATGTTTGAATTATGTTTCTAGTATTATATACAT-CAGTAAATAGTTATTTGCCTACAAAAAAA] [+] EMBL AK070771 [ACACTAGCTCACACAGTGAGGTAGCATAGCTAGCTAAGCCAGCATGGTCTTTAAGAAGAACGCCATGTCTTCCTCGGTTCTCTTCCTCGCCGCGCTGCTGCTGCTCTCGTCCAGCTCCATGAGCAGCGC GGCAC GGTGGCTCGAGGAGGAGTACCCGCCGCACCCCACCGTGCCGGAGTTACCCAAGCCGGAGGTGCCGCCGCACCCCGCCGTGCCGGAGCT GCCCAAGCATGAGGAGCCGCCGCACCCCGTCGTGCCGGAGTTGCCCAAGCACGAAGAGCCGCCTCACCCCGTCGTACCGGAGCTTCCCAAACCTGAGCTGCCGCCACACCCCGTCGTGCCGGAGTTGCCAAAGCACGAAGAGCCACCACACCCCGCCGTCGTGCCGGAGTTGCCCAAGCACGAAGAGCCGCCGCACCCTGCCGTCGTGCCGGAGTTTCCCAAGCACGAGGAGCCACCACACCCTGCCGTGCCGGAGCTGCCACACCCAGCTGTGCCGGAGATACCGCAC CCG GCCGGAGCTTCCCAAGCACGAGGAGCCGCCACACCCCGTCGTGCCGGAGCTGCCAAAGCCGGAGGTGCCACACGCCGCCGTGCCGGAGTTGCCCAAACCTGAGCTGCCGCCACACCCCGCCGTGCCGGAGCTGCC AAGCACGAAGAGCCGCCGCACCCTGTCGTGCCGGAGCTGCCCAAGCACGAGGAGCCGCCGCACCCCGTCGTGCCGGAGCTGCC GAAGCCTGAAGAGCCGCACCACCCCG AGGTGCCGGAGCATGAACAGCCGCCGAAGCCTGAGAGCCATTACCCCGAGGTGCCGATGGCCAAGCCATGATCGGATGGCGATGCAGAGATTATTGATCGGGCCCATCATATCGCATCCTGAATAATCATGGGTTTATTTGTATATGTGTGTATGATATGATCATGTAAACTGTGGTGTTTGCTAGGAATGTGTGAGTGATGCTT GATGTT ] [+] EMBL AK106214 [ CACTAGCTCACACAGTGAGGTAGCATAGCTAGCTAAGCCAGCATGGTCTTTAAGAAGAACGCCATGTCTTCCTCGGTTCTCTTCCTCGCCGCGCTGCTGCTGCTCTCGTCCAGCTCCATGAGCAGCGC GGCAC GGTGGCTCGAGGAGGAGTACCCGCCGCACCCCACCGTGCCGGAGTTACCCAAGCCGGAGGTGCCGCCGCACCCCGCCGTGCCGGAGCT GCCCAAGCATGAGGAGCCGCCGCACCCCGTCGTGCCGGAGTTGCCCAAGCACGAAGAGCCGCCTCACCCCGTCGTACCGGAGCTTCCCAAACCTGAGCTGCCGCCACACCCCGTCGTGCCGGAGTTGCCAAAGCACGAAGAGCCACCACACCCCGCCGTCGTGCCGGAGTTGCCCAAGCACGAAGAGCCGCCGCACCCTGCCGTCGTGCCGGAGTTTCCCAAGCACGAGGAGCCACCACACCCTGCCGTGCCGGAGCTGCCACACCCAGCTGTGCCGGAGATACCGCACCCAGCCGTGCCGGAGCTTCCCAAGCACGAGGAGCCGCCACACCCCGTCGTGCCGGAGCTGCCAAAGCCGGAGGTGCCACACGCCGCCGTGCCGGAGTTGCCCAAACCTGAGCTGCCGCCACACCCCGCCGTGCCGGAGCTGCCTAAGCACGAAGAGCCGCCGCACCCTGTCGTGCCGGAGCTGCCCAAGCACGAGGAGCCGCCGCACCCCGTCGTGCCGGAGCTGCC GAAGCCTGAAGAGCCGCACCACCCCG AGGTGCCGGAGCATGAACAGCCGCCGAAGCCTGAGAGCCATTACCCCGAGGTGCCGATGGCCAAGCCATGATCGGATGGCGATGCAGAGATTATTGATCGGGCCCATCATATCGCATCCTGAATAATCATGGGTTTATTTGTATATGTGTGTATGATATGATCATGTAAACTGTGGTGTTTGCTAGGAATGTGTGAGTGATGCTT GATGTTTCAGCCATCCAGTTGTTCTTGTTCTTGGAGGATGTACTTGCGTGTGCTACGCTTATATCTATGCACACATC ATCTACC ] [+] EMBL AK105918 [ CACTAGCTCACACAGTGAGGTAGCATAGCTAGCTAAGCCAGCATGGTCTTTAAGAAGAACGCCATGTCTTCCTCGGTTCTCTTCCTCGCCGCGCTGCTGCTGCTCTCGTCCAGCTCCATGAGCAGCGC GGCAC GGTGGCTCGAGGAGGAGTACCCGCCGCACCCCACCGTGCCGGAGTTACCCAAGCCGGAGGTGCCGCCGCACCCCGCCGTGCCGGAGCT GCCCAAGCATGAGGAGCCGCCGCACCCCGTCGTGCCGGAGTTGCCCAAGCACGAAGAGCCGCCTCACCCCGTCGTACCGGAGCTTCCCAAACCTGAGCTGCCGCCACACCCCGTCGTGCCGGAGTTGCCAAAGCACGAAGAGCCACCACACCCCGCCGTCGTGCCGGAGTTGCCCAAGCACGAAGAGCCGCCGCACCCTGCCGTCGTGCCGGAGTTTCCCAAGCACGAGGAGCCACCACACCCTGCCGTGCCGGAGCTGCCACACCCAGCTGTGCCGGAGATACCGCACCCAGCCGTGCCGGAGCTTCCCAAGCACGAGGAGCCGCCACACCCCGTCGTGCCGGAGCTGCCAAAGCCGGAGGTGCCACACGCCGCCGTGCCGGAGTTGCCCAAACCTGAGCTGCCGCCACACCCCGCCGTGCCGGAGCTGCCTAAGCACGAAGAGCCGCCGCACCCTGTCGTGCCGGAGCTGCCCAAGCACGAGGAGCCGCCGCACCCCGTCGTGCCGGAGCTGCC GAAGCCTGAAGAGCCGCACCACCCCG AGGTGCCGGAGCATGAACAGCCGCCGAAGCCTGAGAGCCATTACCCCGAGGTGCCGATGGCCAAGCCATGATCGGATGGCGATGCAGAGATTATTGATCGGGCCCATCATATCGCATCCTGAATAATCATGGGTTTATTTGTATATGTGTGTATGATATGATCATGTAAACTGTGGTGTTTGCTAGGAATGTGTGAGTGATGCTT GATGTTTCAGCCATCCAGTTGTTCTTGTTCTTGGAGGATGTACTTGCGTGTGCTACGCTTATATCTATGCACACATC ATCTACC ] [+] EMBL AU182462 [ ACACAGTGAGGTAGCATAGCTAGCTAAGCCAGCATGGTCTTTAAGAAGAACGCCATGTCTTCCTCGGTTCTCTTCCTCGCCGCGCTGCTGCTGCTCTCGTCCAGCTCCATGAGCAGCGCAGGCACAGGTGGCTCGAGGNNTTTTNCCCGCCGTACCCCACCGTGCCGGAGTTACCCAAGCCGGAGGTGCCGCCGCACCCCGCCGTGCCGGAGCTAGCCCAAGCATGAGGAGCCGNCGCACCCCGTCGTGCCGGAGTTGCCCAAGCACGAAGAGCCGCCTCACCCCGTCGNACCGGAGCTTACCAAACCTGAGCTGCC ] [+] EMBL AU182463 [ CCCCGTCGTNCCGGAGCTGCCNAAAGCCTGAAGAGCCGCACCACCCCGAAGGTGCCGGAGCATGAACANCCNCCGAAGCCTGAGAGCCATTACCCCGAGGTGCCGATGGCCAAGCCATGATCGGATGGCTATTCAGAGATTATTGATCGGGCCCATCATATCGCATCCTGAATAATCATGGGTTTATTTGTATATGTGTGTATGATATGATCATGTAAACTGTGGTGTTTGCTANAAANGTGTGAGTGATGCTT GATGTTTCAGCCATCCAGTTGTTCTTGTTCTTGGAGGATGTACTTGCGTGTGCTACGCTTATATCTATGCACACATC ATCTACCCATGTACCATATATGCTTCATTAATaaaaaaaaa ] [+] EMBL BI803316 [ ACTGTGGTGTTTGCTAGGAATGTGTGAGTGATGCTTCGATGTTTCAGCCATCCAGTTGTTCTTGTTCTTGGAGGATGTACTTGCGTGTGCTACGCTTATATCTATGCACACATCTATCTACCCATGTACCATATATGCTTCATTAATTTATGTTTGAATTATGTTTCTAGTATTATATACATCCAGTAAATAGTTATTTGCCTACAAAAAA ] [+] EMBL BI799984 [ ACTGTGGTGTTTGCTAGGAATGTGTGAGTGATGCTT GATGTTTCAGCCATCCAGTTGTTCTTGTTCTTGGAGGATGTACTTGCGTGTGCTACGCTTATATCTATGCACACATC ATCTACCCATGTACCATATATGCTTCATTAATTTATGTTTGAATTATGTTTCTAGTATTATATAAAT CAGTAAATAGTTATTTGCCTACAAAAAAA] consensusID : consensus_13462#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 989 fasta sequence [AGAGTGCTTAGCTAGCTCACACTAAAAGATATAGAGATAGAAGCCACTGAGAGCTTGAGAACACCATGTCTTCCTCGGTTCTTCTCTTCCTCGTGGCGCTGCTGCTCTCGTGCAGCACCATGGGCAACGCTGCACGACGCCTGGAGGTGGAGTACCCGGCGGCGCACCCCGCCGTGCCGGAGCTTCCCAAGCCTGAGCTGCCGCCGCACCCCGTCGTGCCGGAGCTGCCAAAGCACGAAGAACCACCGCCACACCCACACCCCGCCGTGCCGGAGCTTCCGAAGCCTGAACTGCCGCCGCCGCACCCCGCCGTGCCGGAGCTGCCCAAGCACGAAGAGCCACCGCACCCCGTCGTGCCGGAGCTGCCAAAGCCCGAGGTGCCTCACCCTGCCGTGCCGGAGTTGCCGAAACACGAAGAGCCACCACACCCCGTCGTGCCGGAGTTGCCGAAACACGAAGAGCCACCGCACCCCGTCGTGCCGGAGCTGCCGAAGCCCGAGGTGCCTCACCCTGCTGTGCCGGAGTTGCCGAAACACGAAGAGCCACCACACCCCGTCGTGCCGGAGTTGCCAAAGCCTGAGGTGCCACACCCTGTGGTGCCGGAGTTGCCGAAGCCCGAGGTGCCGCATCCCACCGTGCCAGAGCATGAACAGCCGCCCAAGCCTGAGAGCCATTATCCCGAGAAGCCATGATCGATCCAGAGATCGATCGATCGGCCGGTCGTATCGTATCCTGAAATTACTACGTGTTGCTGTATGTGTGTATGTTCATGTGTAAGCTTTGATCGATGTTTGCCTAAGATATTTTCAGTGATGATCTAGCTAGCTGTGTGAGTGTGTGAGATGATGTACGTTGTTGTTGTGTTTTGTTTTGTGGCAGCTTTCTTTGTTCTTGGATGAGTTATTGTGTTATCGTATGTGCTGATTTATGTGTGTGCACACACGATCTACACTTGTATCATACATGCTTCATAAATCAATAAAATAGCT] [+] EMBL AK068696 [AGAGTGCTTAGCTAGCTCACACTAAAAGATATAGAGATAGAAGCCACTGAGAGCTTGAGAACACCATGTCTTCCTCGGTTCTTCTCTTCCTCGTGGCGCTGCTGCTCTCGTGCAGCACCATGGGCAACGCTGCACGACGCCTGGAGGTGGAGTACCCGGCGGCGCACCCCGCCATGCCGGAGCTTCCCAAGCCTGAGCTGCCGCCGCACCCCGTCGTGCCGGAGCTGCCAAAGCACGAAGAACCACCGCCACACCCACACCCCGCCGTGCCGGAGCTTCCGAAGCCTGAACTGCCGCCGCCGCACCCCGCCGTGCCGGAGCTGCCCAAGCACGAAGAGCCACCGCACCCCGTCGTGCCGGAGCTGCCAAAGCCCGAGGTGCCTCACCCTGCCGTGCCGGAGTTGCCGAAACACGAAGAGCCACCACACCCCGTCGTGCCGGAGTTGCCGAAACACGAAGAGCCACCGCACCCCGTCGTGCCGGAGCTGCCGAAGCCCGAGGTGCCTCACCCTGCTGTGCCGGAGTTGCCGAAACACGAAGAGCCACCACACCCCGTCGTGCCGGAGTTGCCAAAGCCTGAGGTGCCACACCCTGTGGTGCCGGAGTTGCCGAAGCCCGAGGTGCCGCATCCCACCGTGCCAGAGCATGAACAGCCGCCCAAGCCTGAGAGCCATTATCCCGAGAAGCCATGATCGATCCAGAGATCGATCGATCGGCCGGTCGTATCGTATCCTGAAATTACTACGTGTTGCTGTATGTGTGTATGTTCATGTGTAAGCTTTGATCGATGTTTGCCTAAGATATTTTCAGTGATGATCTAGCTAGCTGTGTGAGTGTGTGAGATGATGTACGTTGTTGTTGTGTTTTGTTTTGTGGCAGCTTTCTTTGTTCTTGGATGAGTTATTGTGTTATCGTATGTGCTGATTTATGTGTGTGCACACACGATCTACACTTGTATCATACATGCTTCATAAATCAATAAAATAG ] [+] EMBL AK106010 [ GTGCTTAGCTAGCTCACACTAAAAGATATAGAGATAGAAGCCACTGAGAGCTTGAGAACACCATGTCTTCCTCGGTTCTTCTCTTCCTCGTGGCGCTGCTGCTCTCGTGCAGCACCATGGGCAACGCTGCACGACGCCTGGAGGTGGAGTACCCGGCGGCGCACCCCGCCGTGCCGGAGCTTCCCAAGCCTGAGCTGCCGCCGCACCCCGTCGTGCCGGAGCTGCCAAAGCACGAAGAACCACCGCCACACCCACACCCCGCCGTGCCGGAGCTTCCGAAGCCTGAACTGCCGCCGCCGCACCCCGCCGTGCCGGAGCTGCCCAAGCACGAAGAGCCACCGCACCCCGTCGTGCCGGAGCTGCCAAAGCCCGAGGTGCCTCACCCTGCCGTGCCGGAGTTGCCGAAACACGAAGAGCCACCACACCCCGTCGTGCCGGAGTTGCCGAAACACGAAGAGCCACCGCACCCCGTCGTGCCGGAGCTGCCGAAGCCCGAGGTGCCTCACCCTGCTGTGCCGGAGTTGCCGAAACACGAAGAGCCACCACACCCCGTCGTGCCGGAGTTGCCAAAGCCTGAGGTGCCACACCCTGTGGTGCCGGAGTTGCCGAAGCCCGAGGTGCCGCATCCCACCGTGCCAGAGCATGAACAGCCGCCCAAGCCTGAGAGCCATTATCCCGAGAAGCCATGATCGATCCAGAGATCGATCGATCGGCCGGTCGTATCGTATCCTGAAATTACTACGTGTTGCTGTATGTGTGTATGTTCATGTGTAAGCTTTGATCGATGTTTGCCTAAGATATTTTCAGTGATGATCTAGCTAGCTGTGTGAGTGTGTGAGATGATGTACGTTGTTGTTGTGTTTTGTTTTGTGGCAGCTTTCTTTGTTCTTGGATGAGTTATTGTGTTATCGTATGTGCTGATTTATGTGTGTGCACACACGATCTACACTTGTATCATACATGCTTCATAAATCAATAAAATAGCT] [+] EMBL AU095580 [ TAGCTAGCTCACACTAAAAGATATAGAGATAGAAGCCACTGAGAGCTTGAGAACACCATGTCTTCCTCGGTTCTTCTCTTCCTCGTGGCGCTGCTGCTCTCGTGCAGCACCATGGGCAACGCTGCACGACGCCTGGAGGTGGAGTACCCGGCGGCGCACCCCGCCGTGCCGGAGCTTCCCAAGCCTGAGCTGCCGCCGCACCCCGTCGTGCCGGAGCTGCCAAAGCACGAAGAACCACCGCCACACCCACACCCCGCCGTGCCGGAGCTTCCGAAGCCTGAACTGCCGCCGCCGCACNCCGCCGTGCCGGAGCTGCCCAAGCACGAAGAGCCACCGCACNCCGTCGTGCCGGAGCTGCCAAAGCCCGAGGTGCCTCACCCTGCCGTGCCGGAGTTGCNGAAACACGA ] consensusID : consensus_13462#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 587 fasta sequence [GCTCACACTGAGATCCAGAGATAGAGATCAGAAAGACAGAAAAGTAGAAGCCATATTGAGAGTTTGAGACAGCATGATCTCCAAGAACACCATGGCTTCCTCGGTTCTCTTGCTTGTGGCGCTGCTGCTCTCGTGCAGCTCCATGAGCAGCGAGGCACGACGCCTGGAGGAGGCGTACCCGGCGCACCCCGCCGTGCCGGAGCTTCCGAAGCCTGAGCTGCCGCCGCACCCCGTCGCGCCGGAGGTGGCAAAGCACGAAGAACCACCGCCACACCCCGCCGTGCCGGAGCTTCCGAAGCCTGAGCTGCCGCCGCACCCCGTCGCGGCGGAGCTGCTCAAGCACGAAGAAACACCGCCCACCCACACCCCGCCGTGGCGGAGCTTCCGAAGCCTGAAATGTCGCCGCCGCAACCCGCCGTGGCGGGGGTGCCGAAGCACAAAAAAAGGCGCTCCCTACCCCCCCTGGCGGAGTTCCGAAACTGGACTGCGCCCCACCCGCCGTGCCGGACTGCCCAGCACAAAAACCCCCCCCCCCCGTCTGGCGGACGCTGGTGGCGAATCCGACGTGCGTCCCCTGCCCGGCCGGA] [+] EMBL CA755349 [GCTCACACTGAGATCCAGAGATAGAGATCAGAAAGACAGAAAAGTAGAAGCCATATTGAGAGTTTGAGACAGCATGATCTCCAAGAACACCATGGCTTCCTCGGTTCTCTTGCTTGTGGCGCTGCTGCTCTCGTGCAGCTCCATGAGCAGCGAGGCACGACGCCTGGAGGAGGCGTACCCGGCGCACCCCGCCGTGCCGGAGCTTCCGAAGCCTGAGCTGCCGCCGCACCCCGTCGCGCCGGAGGTGGCAAAGCACGAAGAACCACCGCCACACCCCGCCGTGCCGGAGCTTCCGAAGCCTGAGCTGCCGCCGCACCCCGTCGCGGCGGAGCTGCTCAAGCACGAAGAAACACCGCCCACCCACACCCCGCCGTGGCGGAGCTTCCGAAGCCTGAAATGTCGCCGCCGCAACCCGCCGTGGCGGGGGTGCCGAAGCACAAAAAAAGGCGCTCCCTACCCCCCCTGGCGGAGTTCCGAAACTGGACTGCGCCCCACCCGCCGTGCCGGACTGCCCAGCACAAAAACCCCCCCCCCCCGTCTGGCGGACGCTGGTGGCGAATCCGACGTGCGTCCCCTGCCCGGCCGGA] consensusID : consensus_13462#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 576 fasta sequence [CCGCGTNCCGGAGCTTCCGAAGCCTGAANTGCCGCCGCCGCACCCCGCCGTNCCGGAGCTGCCCAAGCACGAAGAGCCACCGCACCCCGTCGTGCCGGAGCTGCCAAAGCCCGAGGTGCCTCACCCTGCCGTGCCGGAGTTGCCGAAACACGAAGAGCCACCACACCCCGTCGTGCCGGAGTTGCCGAAACACGAAGAGCCACCGCACCCCGTCGTGCCGGAGCTGCCGAAGCCCGAGGTGCCTCACCCTGCTGTGCCGGAGTTGCCGAAACACGAAGAGCCACCACACCCCGTCGTGCCGGAGTTGCCAAAGCCTGAGGTGCCACACCCTGTGGTGCCGGAGTTGCCGAAGCCCGAGGTGCCGCATCCCACCGTGCCAGAGCATGAACAGCCGCCCAAGCCTGAGAGCCATTATCCCGAGAAGCCATGATCGATCCAGAGATCGATCGATCGGCCGGTCGTATCGTATCCTGAAATTACTACGTGTTGCTGTATGTGTGTATGTTCATGTGTAAGCTTTGATCGATGTTTGCCTAAGATATTTTCAGTGATGATCTAGCTAAAAAAAAAAAAAAA] [+] EMBL AU070894 [CCGCGTNCCGGAGCTTCCGAAGCCTGAANTGCCGCCGCCGCACCCCGCCGTNCCGGAGCTGCCCAAGCACGAAGAGCCACCGCACCCCGTCGTGCCGGAGCTGCCAAAGCCCGAGGTGCCTCACCCTGCCGTGCCGGAGTTGCCGAAACACGAAGAGCCACCACACCCCGTCGTGCCGGAGTTGCCGAAACACGAAGAGCCACCGCACCCCGTCGTGCCGGAGCTGCCGAAGCCCGAGGTGCCTCACCCTGCTGTGCCGGAGTTGCCGAAACACGAAGAGCCACCACACCCCGTCGTGCCGGAGTTGCCAAAGCCTGAGGTGCCACACCCTGTGGTGCCGGAGTTGCCGAAGCCCGAGGTGCCGCATCCCACCGTGCCAGAGCATGAACAGCCGCCCAAGCCTGAGAGCCATTATCCCGAGAAGCCATGATCGATCCAGAGATCGATCGATCGGCCGGTCGTATCGTATCCTGAAATTACTACGTGTTGCTGTATGTGTGTATGTTCATGTGTAAGCTTTGATCGATGTTTGCCTAAGATATTTTCAGTGATGATCTAGCTAAAAAAAAAAAAAAA] consensusID : consensus_13462#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 483 fasta sequence [NAGGGNTGCCTGAGTCTANTCGGCNGGNGGTGCCNCCGCACCCCGCCTGTGCCGGANCTGCCCANGNNTGAGGAGCCGCCGCTCCCCGTCNTGCNGGAGTTGCCCNAGCNCGAANAGCCGCCTCACCCCGTCGTACCGGAGCTTCCCNGNNCTGAGCTGCCGCCACACCCCGTCGTGCCGGNGTTGCCAAAGCNCGANGAGCCNCCACNCCCCGCCGTCGTGCCGGAGTTGCCCAAGCACNAAGAGCCGCCGCACCCTGCCGTCGTGCCGGAGTTTCCCANNCACGAGGAGCCACCACACCCTGCCGTGCCGGNGCTGCCNCACCCAGCTGTGCCGGAGATACCGCNCCCNGCCGTGCCGGAGCTTCCCAAGCACGAGGAGCCGCCACACCCCGTCGTGCCNGGAGCTGCCNAAGCCGGAGGTGCCACNCGCCGCCGTGCCGGAGTTGCCCTANCCTGAGCTGCCGCCACACCCCGNCGTGGC] [+] EMBL BE228395 [NAGGGNTGCCTGAGTCTANTCGGCNGGNGGTGCCNCCGCACCCCGCCTGTGCCGGANCTGCCCANGNNTGAGGAGCCGCCGCTCCCCGTCNTGCNGGAGTTGCCCNAGCNCGAANAGCCGCCTCACCCCGTCGTACCGGAGCTTCCCNGNNCTGAGCTGCCGCCACACCCCGTCGTGCCGGNGTTGCCAAAGCNCGANGAGCCNCCACNCCCCGCCGTCGTGCCGGAGTTGCCCAAGCACNAAGAGCCGCCGCACCCTGCCGTCGTGCCGGAGTTTCCCANNCACGAGGAGCCACCACACCCTGCCGTGCCGGNGCTGCCNCACCCAGCTGTGCCGGAGATACCGCNCCCNGCCGTGCCGGAGCTTCCCAAGCACGAGGAGCCGCCACACCCCGTCGTGCCNGGAGCTGCCNAAGCCGGAGGTGCCACNCGCCGCCGTGCCGGAGTTGCCCTANCCTGAGCTGCCGCCACACCCCGNCGTGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13462#1 AGAGTGCTTAGCTAGCTCACACTAAAAGATATAGAGATAGAAGCCACTGAGAGCTTGAGA 60 consensus_13462#3 ------------------------------------------------------------ consensus_13462#0 ------------------------------------------------------------ consensus_13462#4 ------------------------------------------------------------ consensus_13462#2 ------------------------------------------------------------ consensus_13462#1 ACACCATGTCTTCCTCGGTTCTTCTCTTCCTCGTGGCGCTGCTGCTCTCGTGCAGCACCA 120 consensus_13462#3 ------------------------------------------------------------ consensus_13462#0 -------------------------------------ACACTAGCTCACACAGTGAGGTA 23 consensus_13462#4 ------------------------------------------------------------ consensus_13462#2 ------------------------------------------------------------ consensus_13462#1 TGGGCAACGCTGCACGACGCCTGGAGGTGGAGTACCCGGCGGCGCACCCCGCCGTGCCGG 180 consensus_13462#3 ------------------------------------------------------------ consensus_13462#0 GCATAGCTAGCTAAGCCAGCATGGTCTTTAAGAAGAACGCCATGTCTTCCTCGGTTCTCT 83 consensus_13462#4 ------------------------------------------------------------ consensus_13462#2 ------------------------------------------------------------ consensus_13462#1 AGCTTCCCAAGCCTGAGCTGCCGCCGCACCCCGTCGTGCCGGAGCTGCCAAAGCACGAAG 240 consensus_13462#3 ------------------------------------------------------------ consensus_13462#0 TCCTCGCCGCGCTGCTGCTGCTCTCGTCCAGCTCCATGAGCAGCGCGGCACGGTGGCTCG 143 consensus_13462#4 ------------------------------------------------------------ consensus_13462#2 ------------------GCTCACACTGAGATCCAGAGATAGAGATCAGAAAGACAGAAA 42 consensus_13462#1 AACCACCGCCACACCCACACCCCGCCGTGCCGGAGCTTCCGAAGCCTGAACTGCCGCCGC 300 consensus_13462#3 ---------------------CCGC-GTNCCGGAGCTTCCGAAGCCTGAANTGCCGCCGC 38 consensus_13462#0 AGGAGGAGTACCCGCCGCACCCCACCGTGCCGGAGTTACCCAAGCCGGAGGTGCCGCCGC 203 consensus_13462#4 ---------------------NAGGGNTGCCTGAGTCTANTCGGCNGGNGGTGCCNCCGC 39 consensus_13462#2 AGTAGAAGCCATATTGAGAGTTTGAGACAGCATGATCTCCAAGAACACCATGGCTTCCTC 102 * ** ** * consensus_13462#1 CGCACCCC-GCC-GTGCCGGAGCTGCCCAAGCACGAAGAGCCACCGCACCCCGTCGTGCC 358 consensus_13462#3 CGCACCCC-GCC-GTNCCGGAGCTGCCCAAGCACGAAGAGCCACCGCACCCCGTCGTGCC 96 consensus_13462#0 ---ACCCC-GCC-GTGCCGGAGCTGCCCAAGCATGAGGAGCCGCCGCACCCCGTCGTGCC 258 consensus_13462#4 ---ACCCC-GCCTGTGCCGGANCTGCCCANGNNTGAGGAGCCGCCGCTCCCCGTCNTGCN 95 consensus_13462#2 GGTTCTCTTGCTTGTGGCGCTGCTGCTCTCGTGCAG-----CTCCATGAGCAGCGAGGCA 157 * * ** ** ** **** * * * ** * * ** consensus_13462#1 GGAGCTGCCAAAGCCCGAGG---TGCCTCACCCTGCCGTGCCGGAGTTGCCGAAACACGA 415 consensus_13462#3 GGAGCTGCCAAAGCCCGAGG---TGCCTCACCCTGCCGTGCCGGAGTTGCCGAAACACGA 153 consensus_13462#0 GGAGTTGCCCAAGCACGAAGAGCCGCCTCACCCCGTCGTACCGGAGCTTCCCAAACCTGA 318 consensus_13462#4 GGAGTTGCCCNAGCNCGAANAGCCGCCTCACCCCGTCGTACCGGAGCTTCCCNGNNCTGA 155 consensus_13462#2 CGA-CGCCTGGAGGAGGCGTACCCGGCGCACCCCGCCGTGCCGGAGCTTCCGAAGCCTGA 216 ** * ** * * * ***** * *** ****** * ** ** consensus_13462#1 AGAGCCACCACACCCCGTCGTGCCGGAGTTGCCGAAACACGAAGAGCCACCGCACCCCG- 474 consensus_13462#3 AGAGCCACCACACCCCGTCGTGCCGGAGTTGCCGAAACACGAAGAGCCACCGCACCCCG- 212 consensus_13462#0 GCTGCCGCCACACCCCGTCGTGCCGGAGTTGCCAAAGCACGAAGAGCCACCACACCCCGC 378 consensus_13462#4 GCTGCCGCCACACCCCGTCGTGCCGGNGTTGCCAAAGCNCGANGAGCCNCCACNCCCCGC 215 consensus_13462#2 GCTGCCGCCGCACCCCGTCGCGCCGGAGGTGGCAAAGCACGAAGAACCACCGCCACACCC 276 *** ** ********** ***** * ** * ** * *** ** ** ** * * * consensus_13462#1 --TCGTGCCGGAGCTGCCGAAGCCCGAGG---TGCCTCACCCTGCTGT---GCCGGAGTT 526 consensus_13462#3 --TCGTGCCGGAGCTGCCGAAGCCCGAGG---TGCCTCACCCTGCTGT---GCCGGAGTT 264 consensus_13462#0 CGTCGTGCCGGAGTTGCCCAAGCACGAAGAGCCGCCGCACCCTGCCGTCGTGCCGGAGTT 438 consensus_13462#4 CGTCGTGCCGGAGTTGCCCAAGCACNAAGAGCCGCCGCACCCTGCCGTCGTGCCGGAGTT 275 consensus_13462#2 CGCCGTGCCGGAGCTTCCGAAGCCTGAGCTGCCGCCGCACCCCGTCGC---GGCGGAGCT 333 ********** * ** **** * *** ***** * * * ***** * consensus_13462#1 GCCGAAACACGAAGAGCCACC--------ACACCCCGTCGTGCCGGAGTTGCCAAA---- 574 consensus_13462#3 GCCGAAACACGAAGAGCCACC--------ACACCCCGTCGTGCCGGAGTTGCCAAA---- 312 consensus_13462#0 TCCCAAGCACGAGGAGCCACC--------ACACCCTGCCGTGCCGGAGCTGCCACACCCA 490 consensus_13462#4 TCCCANNCACGAGGAGCCACC--------ACACCCTGCCGTGCCGGNGCTGCCNCACCCA 327 consensus_13462#2 GCTCAAGCACGAAGAAACACCGCCCACCCACACCCCGCCGTGGCGGAGCTTCCGAAGCCT 393 * * ***** ** **** ****** * **** *** * * ** * consensus_13462#1 -----GCCTGAGGTGCCACACCCTGTGGTGCCGGAGTTGCCGAAGCCCGAGGTGCCGC-- 627 consensus_13462#3 -----GCCTGAGGTGCCACACCCTGTGGTGCCGGAGTTGCCGAAGCCCGAGGTGCCGC-- 365 consensus_13462#0 GCTGTGCCGGAGATACCGCACCCAGCCGTGCCGGAGCTTCCCAAGCACGAGGAGCCGCCA 550 consensus_13462#4 GCTGTGCCGGAGATACCGCNCCCNGCCGTGCCGGAGCTTCCCAAGCACGAGGAGCCGCCA 387 consensus_13462#2 GAAATGTC---GCCGCCGCAACCCGCCGTGGCGGGGGTGCCGAAGCACAAAAAAAGGC-G 449 * * * ** * ** * *** *** * * ** **** * * ** consensus_13462#1 -ATCCCACCGTGCCAGAGCATGAACAGCCGCCCAAGCCTGAGAGCCATTATCCCGAGAAG 686 consensus_13462#3 -ATCCCACCGTGCCAGAGCATGAACAGCCGCCCAAGCCTGAGAGCCATTATCCCGAGAAG 424 consensus_13462#0 CACCCCGTCGTGCCGG---------AGCTGCCAAAGCCGGAGGTGCCACACGCCGCCGTG 601 consensus_13462#4 CACCCCGTCGTGCCNGG--------AGCTGCCNAAGCCGGAGGTGCCACNCGCCGCCGTG 439 consensus_13462#2 CTCCCTACCCCCCCTGGC------GGAGTTCCGAAACTGGACTGCGCCCCACCCGCCGTG 503 ** * ** * ** ** * ** *** * consensus_13462#1 CCATGATCGATCCAGAGATCGATCGATCGGCCGGTCGTATCGTATCCTGAAATTACTACG 746 consensus_13462#3 CCATGATCGATCCAGAGATCGATCGATCGGCCGGTCGTATCGTATCCTGAAATTACTACG 484 consensus_13462#0 CCGGAGTTG--CCCAAACCTGAGCTGCCGCCACACCCCGCCGTGCCGGAGCTGCCTAAGC 659 consensus_13462#4 CCGGAGTTG--CCCTANCCTGAGCTGCCGCCACACCCCGNCGTGGC-------------- 483 consensus_13462#2 CCG-GACTG---CCCAGCACAAA-AACCCCCCCCCCCCGTC-TGGCG-GACGCTGGTGGC 556 ** * * * * * * * * * * consensus_13462#1 TGTTGCTGTATGTGTGTATGTTCATGTGTAAGCTTTGATCGATGTTTGCCTAAGATATTT 806 consensus_13462#3 TGTTGCTGTATGTGTGTATGTTCATGTGTAAGCTTTGATCGATGTTTGCCTAAGATATTT 544 consensus_13462#0 ACGAAGAGCCGCCGCACCCTGTCGTGCCGGAGCTGCC-CAAGCACGAGGAGCCGCCGCAC 718 consensus_13462#4 ------------------------------------------------------------ consensus_13462#2 GAATCCGACGTGCGTCCCCTGCCCGGCCGGA----------------------------- 587 consensus_13462#1 TCAGTGATGATCTAGCTAGCTGTGTGAGTGTGTGAGATGATGTACGTTGTTGTTGTGTTT 866 consensus_13462#3 TCAGTGATGATCTAGCTAAAAAAAAAAAAAAA---------------------------- 576 consensus_13462#0 CCCGTCGTGCCGGAGCTGCCGAAGCCTGAAGAGCCGCACCACCCCGAGGTGCCGGAGCAT 778 consensus_13462#4 ------------------------------------------------------------ consensus_13462#2 ------------------------------------------------------------ consensus_13462#1 TGTTTTGTGGCAGCTTTCTTTGTTCTTGGATGAGTTATTGTGTTATCGTATGTGCTGATT 926 consensus_13462#3 ------------------------------------------------------------ consensus_13462#0 GAACAGCCGCCGAAGCCTGAGAGCCATTACCCCGAGGTGCCGATGGCCAAGCCATGATCG 838 consensus_13462#4 ------------------------------------------------------------ consensus_13462#2 ------------------------------------------------------------ consensus_13462#1 TATGTGTGTGCACACACGATCTACACTTGTATCATACATGCTTCATAAATCAATAAAATA 986 consensus_13462#3 ------------------------------------------------------------ consensus_13462#0 GATGGCGATGCAGAGATTATTGATCGGGCCCATCATATCGCATCCTGAATAATCATGGGT 898 consensus_13462#4 ------------------------------------------------------------ consensus_13462#2 ------------------------------------------------------------ consensus_13462#1 GCT--------------------------------------------------------- 989 consensus_13462#3 ------------------------------------------------------------ consensus_13462#0 TTATTTGTATATGTGTGTATGATATGATCATGTAAACTGTGGTGTTTGCTAGGAATGTGT 958 consensus_13462#4 ------------------------------------------------------------ consensus_13462#2 ------------------------------------------------------------ consensus_13462#1 ------------------------------------------------------------ consensus_13462#3 ------------------------------------------------------------ consensus_13462#0 GAGTGATGCTTGATGTTTCAGCCATCCAGTTGTTCTTGTTCTTGGAGGATGTACTTGCGT 1018 consensus_13462#4 ------------------------------------------------------------ consensus_13462#2 ------------------------------------------------------------ consensus_13462#1 ------------------------------------------------------------ consensus_13462#3 ------------------------------------------------------------ consensus_13462#0 GTGCTACGCTTATATCTATGCACACATCATCTACCCATGTACCATATATGCTTCATTAAT 1078 consensus_13462#4 ------------------------------------------------------------ consensus_13462#2 ------------------------------------------------------------ consensus_13462#1 ------------------------------------------------------------ consensus_13462#3 ------------------------------------------------------------ consensus_13462#0 TTATGTTTGAATTATGTTTCTAGTATTATATACATCAGTAAATAGTTATTTGCCTACAAA 1138 consensus_13462#4 ------------------------------------------------------------ consensus_13462#2 ------------------------------------------------------------ consensus_13462#1 ---- consensus_13462#3 ---- consensus_13462#0 AAAA 1142 consensus_13462#4 ---- consensus_13462#2 ---- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||