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Oryza sativa
cluster # 13475 cluster # 13475       Sequences # 13       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13475#0 length = 1745 sequences # 12  
consensus_13475#1 length = 663 sequences # 1  

consensusID : consensus_13475#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 1745
fasta sequence
                              [CTCGTCGCCACCGCGGTCACCGCCCCTCTCCTCTATTGTTTTCTCGATTCTTCGCAGGGAAGGGGATACGCGCAAGAAACCGCGAGCCATTCCGCGCAGGTCGTCGCCGCGGTCAAATCCGGCGGCGGCGGCGGCGGCGGAGGCCGGAGGGCTAAACGGGCCGCCCCCGTCCGGTGAGATCCTTGAGGGGGTCCTCCGCCCCCCTTGTGTGGCTTGGGGGGGGGGGGGGGGGCGATTCTTCGCGCGGGTGGGTGCTCGATTTGGATGAGAGGAGCGCGACGGCGGGATGGGCACCCCCTCGCAGGGCTCGGCGGCCGTGGCAGCGGCTGGGGTCGACCTCTGCGTGCTCGACCTGGTGCCCGTCTTCGCCAAGGAGATGATCGCCGGGGGCGTCGCCGGCGCCTTCTCCAAGACCGCCATCGCGCCGCTCGAGCGCCTCAAGATATTGCTACAGACTAGGACAAATGAATTCAGTTCTCTTGGCGTCCTCAAATCATTGAAGAAATTAAAACAACATGATGGAATTTTGGGCTTTTACAAGGGAAATGGTGCTAGTGTATTAAGAATTGTTCCTTATGCTGCATTACATTATATGGCGTATGAACGATACAGGTGTTGGATCTTGAATAACTGCCCCTCACTTGGGACAGGACCCTTAGTAGACCTTTTAGCTGGTTCAGCATCTGGAGGAACCGCAGTGTTGTGTACTTATCCCTTGGATCTGGCTAGGACTAAACTTGCCTTCCAGGTCAATAGTTCAGACCAAATCAGTAGTGGTTTGAAGAGGACAAACTTTCAACCAAAATATGGAGGAATAAAGGATGTTTTTCGAGGTGTTTATTCAGAAGGTGGAGTGCGAGCTCTCTATCGTGGAGTAGGTCCAACGCTCATGGGAATACTTCCTTATGCTGGTCTTAAATTCTACATATACGAAGGACTGAAGGCACATGTACCTGAAGATTACAAAAATTCTGTCACATTGAAGTTGTCCTGTGGTGCTGCTGCTGGATTATTTGGGCAGACTCTAACTTACCCACTAGATGTTGTAAGAAGGCAGATGCAGGTTCAGAGTCAACAATATCACGATAAATTTGGTGGGCCACAGATAAGGGGAACA-TTCCA-AGGTCTTATGATCAT-CAAACAAACGCA-GGGATGGAGGCAATTGTTTGCTGGCTTGAGCCTCAATTACATCAAGGTGGTACCCTCTGTGGCTATTGGTTTTACCGCATATGACACGATGAAGAGTTTACTGAAGATACCTCCCAGAGAGAAGAAAATGTCAGGTCATGGTTCTAATTGAAGTTTCTATCCATCCGTAAGAAACAT-GGAGCAGGGCAAGGTTCTCTTTCAAGATTTTATCAAGT-GCCTTTTGTGAAGTCACAATTGTATAAAGCCTCTGAGGTTCAATCTTGTCAAGTAGTAATTGTGTTAACTAACAAGCTTACATATTCTTCCGATTCATTATTTTCATTCATTACATCCACCAGATGTGGAACGTTGTAAATTTGTAGGGTGCTACCACA-ACTTTTAGGATGCTACAAAAGGTTT-CAAAATTCCATACGGGTTTTCCCATAAAAAATGACCTACTCCTCCAGAGCTGTTTATTGCTAAAAATATTTTATGCATAGGGTTTTAGTTCTTCCTCGCCAAGGATTTGGATTAATACGAATGTATATTAGCATGTGTAAAACTATTAATATTGTTTACCATCCAAACTATAAGCTGTTTGGAGGATTTTTAAAAAA]

[+] EMBL AK066220             [CTCGTCGCCACCGCGGTCACCGCCCCTCTCCTCTATTGTTTTCTCGATTCTTCGCAGGGAAGGGGATACGCGCAAGAAACCGCGAGCCATTCCGCGCAGGTCGTCGCCGCGGTCAAATCCGGCGGCGGCGGCGGCGGCGGAGGCCGGAGGGCTAAACGGGCCGCCCCCGTCCGGTGAGATCCTTGAGGGGGTCCTCCGCCCCCCTTGTGTGGCTTGGGGGGGGGGGGGGGGGCGATTCTTCGCGCGGGTGGGTGCTCGATTTGGATGAGAGGAGCGCGACGGCGGGATGGGCACCCCCTCGCAGGGCTCGGCGGCCGTGGCAGCGGCTGGGGTCGACCTCTGCGTGCTCGACCTGGTGCCCGTCTTCGCCAAGGAGATGATCGCCGGGGGCGTCGCCGGCGCCTTCTCCAAGACCGCCATCGCGCCGCTCGAGCGCCTCAAGATATTGCTACAGACTAGGACAAATGAATTCAGTTCTCTTGGCGTCCTCAAATCATTGAAGAAATTAAAACAACATGATGGAATTTTGGGCTTTTACAAGGGAAATGGTGCTAGTGTATTAAGAATTGTTCCTTATGCTGCATTACATTATATGGCGTATGAACGATACAGGTGTTGGATCTTGAATAACTGCCCCTCACTTGGGACAGGACCCTTAGTAGACCTTTTAGCTGGTTCAGCATCTGGAGGAACCGCAGTGTTGTGTACTTATCCCTTGGATCTGGCTAGGACTAAACTTGCCTTCCAGGTCAATAGTTCAGACCAAATCAGTAGTGGTTTGAAGAGGACAAACTTTCAACCAAAATATGGAGGAATAAAGGATGTTTTTCGAGGTGTTTATTCAGAAGGTGGAGTGCGAGCTCTCTATCGTGGAGTAGGTCCAACGCTCATGGGAATACTTCCTTATGCTGGTCTTAAATTCTACATATACGAAGGACTGAAGGCACATGTACCTGAAGATTACAAAAATTCTGTCACATTGAAGTTGTCCTGTGGTGCTGCTGCTGGATTATTTGGGCAGACTCTAACTTACCCACTAGATGTTGTAAGAAGGCAGATGCAGGTTCAGAGTCAACAATATCACGATAAATTTGGTGGGCCACAGATAAGGGGAACA TTCCA AGGTCTTATGATCAT CAAACAAACGCA GGGATGGAGGCAATTGTTTGCTGGCTTGAGCCTCAATTACATCAAGGTGGTACCCTCTGTGGCTATTGGTTTTACCGCATATGACACGATGAAGAGTTTACTGAAGATACCTCCCAGAGAGAAGAAAATGTCAGGTCATGGTTCTAATTGAAGTTTCTATCCATCCGTAAGAAACAT GGAGCAGGGCAAGGTTCTCTTTCAAGATTTTATCAAGT GCCTTTTGTGAAGTCACAATTGTATAAAGCCTCTGAGGTTCAATCTTGTCAAGTAGTAATTGTGTTAACTAACAAGCTTACATATTCTTCCGATTCATTATTTTCATTCATTACATCCACCAGATGTGGAACGTTGTAAATTTGTAGGGTGCTACCACA ACTTTTAGGATGCTACAAAAGGTTT CAAAATTCCATAC                                                                                                                                                                                        ]
[+] EMBL AU068047             [                                              ATTCTTCGCAGGGAAGGGGATACGCGCAAGAAACCGCGAGCCATTCCGCGCAGGTCGTCGCCGCGGTCAAATCCGGCGGCGGCGGCGGCGGCGGAGGCCGGAGGGCTAAACGGGCCGCCCCCGTCCGGTGAGATCCTTGAGGGGGTCCTCCGCCCCCCTTGTGTGGCTTGGGGGGGGGGGGGGGGcantt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CF311809             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TCTTGAATAACTGCCCCTCGCTTGGGACAGGACCCTTAGTAGACCTTTTAGCTGGTTCAGCATCTGGAGGAACCGCAGTGTTGTGTACTTATCCCTTGGATCTGGCTAGGACTAAACTTGCCTTCCAGGTCAATAGTTCAGACCAAATCAGTAGTGGTTTGAAGAGGACAAACTTTCAACCAAAATATGGAGGAATAAAGGATGTTTTTCGAGGTGTTTATTCAGAAGGTGGAGTGCGAGCTCTCTATCGTGGAGTAGGTCCAACGCTCATGGGAATACTTCCTTATGCTGGTCTTAAATTCTACATATACGAAGGACTGAAGGCACATGTACCTGAAGATTACAAAAATTCTGTCACATTGAAGTTGTCCTGTGGTGCTGCTGCTGGATTATTTGGGCAGACTCTAACTTACCCACTAGATGTTGTAAGAAGGCAGATGCAGGTTCAGAGTCAACAATATCACGATAAATTTGGTGGGCCACAGATAAGGGGAACA TTCCA AGGTCTTATGATCAT C                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CB671113             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ATAACTGCCCCTCACTTGGGACAGGACCCTTAGTAGACCTTTTAGCTGGTTCAGCATCTGGAGGAACCGCAGTGTTGTGTACTTATCCCTTGGATCTGGCTAGGACTAAACTTGCCTTCCAGGTCAATAGTTCAGACCAAATCAGTAGTGGTTTGAAGAGGACAAACTTTCAACCAAAATATGGAGGAATAAAGGATGTTTTTCGAGGTGTTTATTCAGAAGGTGGAGTGCGAGCTCTCTATCGTGGAGTAGGTCCAACGCTCATGGGAATACTTCCTTATGCTGGTCTTAAATTCTACATATACGAAGGACTGAAGGCACATGTACCTGAAGATTACAAAAATTCTGTCACATTGAAGTTGTCCTGTGGTGCTGCTGCTGGATTATTTGGGCAGACTCTAACTTACCCACTAGATGTTGTAAGAAGGCAGATGCAGGTTCAGAGTCAACAATATCACGATAAATTTGGTGGGCCACAGATAAGGGGAACA TTCCA AGGTCTTATGATCAT CAAACAAACGCA GGGATGGAGGCAATTGTTTGCTGGCTTGAGCCTCAATTACATCAAGGTGGTACCCTCTGTGGCTATTGGTTTTACCGCATATGACACGATGAAGAGTTTACTGAAGATACCTCCCAGAGAGAAGAAAATGTCAGGTCATGGTTCTAATTGAAGTTTCTATCCATCCGTAAGAAACAT GGAGCAGGGCAAGGTTCTCTTTNCAGATTTTATCAAGT GCCTTTTGTGAAGTCACAATTGTATAAAGCCTCTGAGGGTCAATCTTGTCAAGTAGTAATTGTGTTAACTAACAAagc                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CF196315             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CCTTTTAGCTGGTTCAGCATCTGGAGGAACCGCAGTGTTGTGTACTTATCCCTTGGATCTGGCTAGGACTAAACTTGCCTTCC        AGTTCAGACCAAATCAGTAGTGGTTTGAAGAGGACAAACTTTCAACCAAAATATGGAGGAATAAAGGATGTTTTTCGAGGTGTTTATTCAGAAGGTGGAGTGCGAGCTCTCTATCGTGGAGTAGGTCCAACGCTCATGGGAATACTTCCTTATGCTGGTCTTAAATTCTACATATACGAAGGACTGAAGGCACATGTACCTGAAGATTACAAAAATTCTGTCACATTGAAGTTGTCCTGTGGTGCTGCTGCTGGATTATTTGGGCAGACTCTANCNTACCCACTAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CB671114             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GACCAAATCAGTAGTGGTTGNAAGAGGACAAACTTTCAACCAAAATATGGAGGAATAAAGGATGTTTTTCGAGGTGTTTATTCAGAAGGTGGAGTGCGAGCTCTCTATCGTGGAGTAGGTCCAACGCTCATGGGAATACTTCCTTATGCTGGTCTTAAATTCTACATATACGAAGGACTGAAGGCACATGTACCTGAAGATTACAAAAATTCTGTCACATTGAAGTTGTCCTGTGGTGCTGCTGCTGGATTATTTGGGCAGACTCTAACTTACCCACTAGATGTTGTAAGAAGGCAGATGCAGGTTCAGAGTCAACAATATCACGATAAATTTGGTGGGCCACAGATAAGGGGAACA TTCCA AGGTCTTATGATCAT CAAACAAACGCA GGGATGGAGGCAATTGTTTGCTGGCTTGAGCCTCAATTACATCAAGGTGGTACCCTCTGTGGCTATTGGTTTTACCGCATATGACACGATGAAGAGTTTACTGAAGATACCTCCCAGAGAGAAGAAAATGTCAGGTCATGGTTCTAATTGAAGTTTCTATCCATCCGTAAGAAACAT GGAGCAGGGCAAGGTTCTCTTTCAAGATTTTATCAAGT GCCTTTTGTGAAGTCACAATTGTATAAAGCCTCTGAGGTTCAATCTTGTCAAGTAGTAATTGTGTTAACTAACAAGCTTACATATTCTTCCGATTCATTATTTTCATTCATTACATCCACCAGATGTGGAACGTTGTAAATTTGTAGGGTGCTACCACA ACTTTTAGGATGCTACAAAAGGTTT CAAAATTCCATACGGGTTTTCCCA                                                                                                                                                                             ]
[-] EMBL CB662851             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ACCAAATCAGTAGTGGTTTGAAGAGGACAAACTTTCAACCAAAATATGGAGGAATAAAGGATGTTTTTCGAGGTGTTTATTCAGAAGGTGGAGTGCGAGCTCTCTATCGTGGAGTAGGTCCAACGCTCATGGGAATACTTCCTTATGCTGGTCTTAAATTCTACATATACGAAGGACTGAAGGCACATGTACCTGAAGATTACAAAAATTCTGTCACATTGAAGTTGTCCTGTGGTGCTGCTGCTGGATTATTTGGGCAGACTCTAACTTACCCACTAGATGTTGTAAGAAGGCAGATGCAGGTTCAGAGTCAACAATATCACGATAAATTTGGTGGGCCACAGATAAGGGGAACA TTCCA AGGTCTTATGATCAT CAAACAAACGCA GGGATGGAGGCAATTGTTTGCTGGCTTGAGCCTCAATTACATCAAGGTGGTACCCTCTGTGGCTATTGGTTTTACCGCATATGACACGATGAAGAGTTTACTGAAGATACCTCCCAGAGAGAAGAAAATGTCAGGTCATGGTTCTAATTGAAGTTTCTATCCATCCGTAAGAAACAT GGAGCAGGGCAAGGTTCTCTTTCAAGATTTTATCAAGT GCCTTTTGTGAAGTCACAATTGTATAAAGCCTCTGAGGTTCAATCTTGTCAAGTAGTAATTGTGTTAACTAACAAGCTTACATATTCTTCCGATTCATTATTTTCATTCATTACATCCACCAGATGTGGAACGTTGTAAATTTGTAGGGTGCTACCACA ACTTTTAGGATGCTACAAAAGGTTT CAAAATTCCATACGGG                                                                                                                                                                                     ]
[+] EMBL BI807837             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  cccATATCACGAT AATTTGGTGGGCCACAGATAAGGGGAACACTTCCACAGGTCTTATGATCATCCAGACCAACGCACGGGATGGAGGCCATTGTTTGCTGGATTGAGCCTCAATTACATCAAGGTGGTACCCTCTGTGGCTATTGGTTTTACCGCATATGACACGATGAAGAGTTTACTGAAGATACCTCCCCGAGAGAAGAAAATGTCAGGTCATGGTTCTAATTGAAGTTTCTATCCATCCGTAAGAAACAT GGAGCA GGCAAGGTTCTCTTTCAAGATTTTATCAAGTCGCCTTTTGTGAAGTCACCATTGTATAAAGCCTCTGAGGTTCAATCTTGTCAAGTAGTAATTGTGTTAACTAACAAGCTTACATATTCTTCCGATTCATTATTTTCATTCATTACATCCCCCAGATGTGGAACGTTGTAAACTTGTAGGGTGCTACCACACACTTTTAGGATGCTACCAAAGGTTTCCAAAATTCCATACGGGTTTTCCCATAAAAAAaaaa                                                                                                                                                                  ]
[+] EMBL AU068046             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TCAT CAAACAAACGCA GGGATGGAGGCAATTGTTTGCTGGCTTGAGCCTCAATTACATCAAGGTGGTACCCTCTGTGGCTATTGGTTTTACCGCATATGACACGATGAAGAGTTTACTGAAGATACCTCCCAGAGAGAAGAAAATGTCAGGTCATGGTTCTAATTGAAGTTTCTATCCATCCGTAAGAAACAT GGAGCAGGGCAAGGTTCTCTTTCAAGATTTTATCAAGT GCCTTTTGTGAAGTCACAATTGTATAAAGCCTCTGAGGTTCAATCTTGTCAAGTAGTAATTGTGTTAACTAACAAGCTTACATATTCTTCCGATTCATTATTTTCATTCATTACATCCACCAGATGTGGAACGTTGTAAATTTGTAGGGTGCTACCACA ACTTTTAGGATGCTACAAAAGGTTT CAAAATTCCATACGGGTTTTCCNATAAAAAA                                                                                                                                                                      ]
[+] EMBL AU165146             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CCGCATATGACACGATGAAGAGTTTACTGAAGATACCTCCCAGAGAGAAGAAAATGTCAGGTCATGGTTCTAATTGAAGTTTCTATCCATCCGTAAGAAACAT GGAGCAGGGCAAGGTTCTCTTTCAAGATTTTATCAAGT GCCTTTTGTGAAGTCACAATTGTATAAAGCCTCTGAGGTTCAATCTTGTCAAGTAGTAATTGTGTTAACTAACAAGCTTACATATTCTTCCGATTCATTATTTTCATTCATTACATCCACCAGATGTGGAACGTTGTAAATTTGTAGGGTGCTACCACA ACTTTTAGGATGCTACAAAAGGTTT CAAAATTCCATACGGGTTTTCCCATAAATCTTGACCTACTCCTCCAGAGCTGTTTATTGCTAAAAA                                                                                                                                   ]
[+] EMBL AU165017             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CCGCATATGACACGATGAAGAGTTTACTGAAGATACCTCCCAGAGAGAAGAAAATGTCAGGTCATGGTTCTAATTGAAGTTTCTATCCATCCGTAAGAAACATGGGAGCAGGGCAAGGTTCTCTTTCAAGATTTTATCAAGT GCCTTTTGTGAAGTCACAATTGTATAAAGCCTCTGAGGTTCAATCTTGTCAAGTAGTAATTGTGTTAACTAACAAGCTTACATATTCTTCCGATTCATTATTTTCATTCATTACATCCACCAGATGTGGAACGTTGTAAACTTGTAGGGTGCTACCACA ACTTTTAGGATGCTACAAAAGGTTT CAAAATTCCATAaaaa                                                                                                                                                                                     ]
[-] EMBL CF311810             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GCAGGGCAAGGTTCTCTTTCAAGATTTTATCAAGT GCCTTTTGTGAAGTCACAATTGTATAAAGCCTCTGAGGTTCAATCTTGTCAAGTAGTAATTGTGTTAACTAACAAGCTTACATATTCTTCCGATTCATTATTTTCATTCATTACATCCACCAGATGTGGAACGTTGTAAATTTGTAGGGTGCTACCACA ACTTTTAGGATGCTACAAAAGGTTT CAAAATTCCATACGGGTTTTCCCATAAATCTTGACCTACTCCTCCAGAGCTGTTTATTGCTATTGTTATTTTATGCATAGGGTTTTAGTTCTTCCTCGCCAAGGATTTGGATTAATACGAATGTATATTAGCATGTGTAAAACTATTAATATTGTTTACCATCCAAACTATAAGCTGTTTGGAGGATTTTTAAAAAA]


>consensus_13475#0 CTCGTCGCCACCGCGGTCACCGCCCCTCTCCTCTATTGTTTTCTCGATTCTTCGCAGGGA AGGGGATACGCGCAAGAAACCGCGAGCCATTCCGCGCAGGTCGTCGCCGCGGTCAAATCC GGCGGCGGCGGCGGCGGCGGAGGCCGGAGGGCTAAACGGGCCGCCCCCGTCCGGTGAGAT CCTTGAGGGGGTCCTCCGCCCCCCTTGTGTGGCTTGGGGGGGGGGGGGGGGGCGATTCTT CGCGCGGGTGGGTGCTCGATTTGGATGAGAGGAGCGCGACGGCGGGATGGGCACCCCCTC GCAGGGCTCGGCGGCCGTGGCAGCGGCTGGGGTCGACCTCTGCGTGCTCGACCTGGTGCC CGTCTTCGCCAAGGAGATGATCGCCGGGGGCGTCGCCGGCGCCTTCTCCAAGACCGCCAT CGCGCCGCTCGAGCGCCTCAAGATATTGCTACAGACTAGGACAAATGAATTCAGTTCTCT TGGCGTCCTCAAATCATTGAAGAAATTAAAACAACATGATGGAATTTTGGGCTTTTACAA GGGAAATGGTGCTAGTGTATTAAGAATTGTTCCTTATGCTGCATTACATTATATGGCGTA TGAACGATACAGGTGTTGGATCTTGAATAACTGCCCCTCACTTGGGACAGGACCCTTAGT AGACCTTTTAGCTGGTTCAGCATCTGGAGGAACCGCAGTGTTGTGTACTTATCCCTTGGA TCTGGCTAGGACTAAACTTGCCTTCCAGGTCAATAGTTCAGACCAAATCAGTAGTGGTTT GAAGAGGACAAACTTTCAACCAAAATATGGAGGAATAAAGGATGTTTTTCGAGGTGTTTA TTCAGAAGGTGGAGTGCGAGCTCTCTATCGTGGAGTAGGTCCAACGCTCATGGGAATACT TCCTTATGCTGGTCTTAAATTCTACATATACGAAGGACTGAAGGCACATGTACCTGAAGA TTACAAAAATTCTGTCACATTGAAGTTGTCCTGTGGTGCTGCTGCTGGATTATTTGGGCA GACTCTAACTTACCCACTAGATGTTGTAAGAAGGCAGATGCAGGTTCAGAGTCAACAATA TCACGATAAATTTGGTGGGCCACAGATAAGGGGAACATTCCAAGGTCTTATGATCATCAA ACAAACGCAGGGATGGAGGCAATTGTTTGCTGGCTTGAGCCTCAATTACATCAAGGTGGT ACCCTCTGTGGCTATTGGTTTTACCGCATATGACACGATGAAGAGTTTACTGAAGATACC TCCCAGAGAGAAGAAAATGTCAGGTCATGGTTCTAATTGAAGTTTCTATCCATCCGTAAG AAACATGGAGCAGGGCAAGGTTCTCTTTCAAGATTTTATCAAGTGCCTTTTGTGAAGTCA CAATTGTATAAAGCCTCTGAGGTTCAATCTTGTCAAGTAGTAATTGTGTTAACTAACAAG CTTACATATTCTTCCGATTCATTATTTTCATTCATTACATCCACCAGATGTGGAACGTTG TAAATTTGTAGGGTGCTACCACAACTTTTAGGATGCTACAAAAGGTTTCAAAATTCCATA CGGGTTTTCCCATAAAAAATGACCTACTCCTCCAGAGCTGTTTATTGCTAAAAATATTTT ATGCATAGGGTTTTAGTTCTTCCTCGCCAAGGATTTGGATTAATACGAATGTATATTAGC ATGTGTAAAACTATTAATATTGTTTACCATCCAAACTATAAGCTGTTTGGAGGATTTTTA AAAAA



consensusID : consensus_13475#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 663
fasta sequence
                              [GTGGAGTGCGAGCTCTTTATCGTGGAGTAGGTCCAACGCTCATGGGAATACTTCCTTATGCTGGTCTTAAATTCTACATATACGAAGGACTGAAGGCACATGTACCTGAAGATTACAAAAATTCTGTCACATTGAAGTTGTCCTGTGGTGCTGCTGCTGGATTATTTGGGCAGACTCTAACTTACCCACTAGATGTTGTAAGAAGGCAGATGCAGGTTCAGAGTCAACAATATCACGATAAATTTGGTGGGCCACAGATAAGGGGAACATTCCAAGGTCTTATGATCATCAAACAACCGCAGGGATGGAGGCAATTGTTTGTTGGCTTGAGCCTCAATTACATCAAGGTGGTACCCTCTGTGGTTATTGGTTTTACCGCACATGACACGATGAAGAGTTTACTGAAGATCCCTCCCAGAGAGAAGAAAATGCCAGGTCATGGTTATAAAAGAAGCCCCCCCCCCCCCCCAAGCCACACAAGGGGGGCGGAGGACCCCCTCAAGGATCTCACCGGACGGGGGCGGCCCGTTTAGCCCTCCGGCCTCCGCCGCCGCCGCCGCCGCCGGATTTGACCGCGGCGACGACCTGCGCGGAATGGCTCGCGGTTTCTTGCGCGTATCCCCTTCCCTGCGAAGAATCGAGAAAACAATAGAGGAGAGGGGC]

[-] EMBL CB662850             [GTGGAGTGCGAGCTCTTTATCGTGGAGTAGGTCCAACGCTCATGGGAATACTTCCTTATGCTGGTCTTAAATTCTACATATACGAAGGACTGAAGGCACATGTACCTGAAGATTACAAAAATTCTGTCACATTGAAGTTGTCCTGTGGTGCTGCTGCTGGATTATTTGGGCAGACTCTAACTTACCCACTAGATGTTGTAAGAAGGCAGATGCAGGTTCAGAGTCAACAATATCACGATAAATTTGGTGGGCCACAGATAAGGGGAACATTCCAAGGTCTTATGATCATCAAACAACCGCAGGGATGGAGGCAATTGTTTGTTGGCTTGAGCCTCAATTACATCAAGGTGGTACCCTCTGTGGTTATTGGTTTTACCGCACATGACACGATGAAGAGTTTACTGAAGATCCCTCCCAGAGAGAAGAAAATGCCAGGTCATGGTTATAAAAGAAGCCCCCCCCCCCCCCCAAGCCACACAAGGGGGGCGGAGGACCCCCTCAAGGATCTCACCGGACGGGGGCGGCCCGTTTAGCCCTCCGGCCTCCGCCGCCGCCGCCGCCGCCGGATTTGACCGCGGCGACGACCTGCGCGGAATGGCTCGCGGTTTCTTGCGCGTATCCCCTTCCCTGCGAAGAATCGAGAAAACAATAGAGGAGAGGGGC]


>consensus_13475#1 GTGGAGTGCGAGCTCTTTATCGTGGAGTAGGTCCAACGCTCATGGGAATACTTCCTTATG CTGGTCTTAAATTCTACATATACGAAGGACTGAAGGCACATGTACCTGAAGATTACAAAA ATTCTGTCACATTGAAGTTGTCCTGTGGTGCTGCTGCTGGATTATTTGGGCAGACTCTAA CTTACCCACTAGATGTTGTAAGAAGGCAGATGCAGGTTCAGAGTCAACAATATCACGATA AATTTGGTGGGCCACAGATAAGGGGAACATTCCAAGGTCTTATGATCATCAAACAACCGC AGGGATGGAGGCAATTGTTTGTTGGCTTGAGCCTCAATTACATCAAGGTGGTACCCTCTG TGGTTATTGGTTTTACCGCACATGACACGATGAAGAGTTTACTGAAGATCCCTCCCAGAG AGAAGAAAATGCCAGGTCATGGTTATAAAAGAAGCCCCCCCCCCCCCCCAAGCCACACAA GGGGGGCGGAGGACCCCCTCAAGGATCTCACCGGACGGGGGCGGCCCGTTTAGCCCTCCG GCCTCCGCCGCCGCCGCCGCCGCCGGATTTGACCGCGGCGACGACCTGCGCGGAATGGCT CGCGGTTTCTTGCGCGTATCCCCTTCCCTGCGAAGAATCGAGAAAACAATAGAGGAGAGG GGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13475#0      CTCGTCGCCACCGCGGTCACCGCCCCTCTCCTCTATTGTTTTCTCGATTCTTCGCAGGGA 60
consensus_13475#1      ------------------------------------------------------------
                                                                                   

consensus_13475#0      AGGGGATACGCGCAAGAAACCGCGAGCCATTCCGCGCAGGTCGTCGCCGCGGTCAAATCC 120
consensus_13475#1      ------------------------------------------------------------
                                                                                   

consensus_13475#0      GGCGGCGGCGGCGGCGGCGGAGGCCGGAGGGCTAAACGGGCCGCCCCCGTCCGGTGAGAT 180
consensus_13475#1      ------------------------------------------------------------
                                                                                   

consensus_13475#0      CCTTGAGGGGGTCCTCCGCCCCCCTTGTGTGGCTTGGGGGGGGGGGGGGGGGCGATTCTT 240
consensus_13475#1      ------------------------------------------------------------
                                                                                   

consensus_13475#0      CGCGCGGGTGGGTGCTCGATTTGGATGAGAGGAGCGCGACGGCGGGATGGGCACCCCCTC 300
consensus_13475#1      ------------------------------------------------------------
                                                                                   

consensus_13475#0      GCAGGGCTCGGCGGCCGTGGCAGCGGCTGGGGTCGACCTCTGCGTGCTCGACCTGGTGCC 360
consensus_13475#1      ------------------------------------------------------------
                                                                                   

consensus_13475#0      CGTCTTCGCCAAGGAGATGATCGCCGGGGGCGTCGCCGGCGCCTTCTCCAAGACCGCCAT 420
consensus_13475#1      ------------------------------------------------------------
                                                                                   

consensus_13475#0      CGCGCCGCTCGAGCGCCTCAAGATATTGCTACAGACTAGGACAAATGAATTCAGTTCTCT 480
consensus_13475#1      ------------------------------------------------------------
                                                                                   

consensus_13475#0      TGGCGTCCTCAAATCATTGAAGAAATTAAAACAACATGATGGAATTTTGGGCTTTTACAA 540
consensus_13475#1      ------------------------------------------------------------
                                                                                   

consensus_13475#0      GGGAAATGGTGCTAGTGTATTAAGAATTGTTCCTTATGCTGCATTACATTATATGGCGTA 600
consensus_13475#1      ------------------------------------------------------------
                                                                                   

consensus_13475#0      TGAACGATACAGGTGTTGGATCTTGAATAACTGCCCCTCACTTGGGACAGGACCCTTAGT 660
consensus_13475#1      ------------------------------------------------------------
                                                                                   

consensus_13475#0      AGACCTTTTAGCTGGTTCAGCATCTGGAGGAACCGCAGTGTTGTGTACTTATCCCTTGGA 720
consensus_13475#1      ------------------------------------------------------------
                                                                                   

consensus_13475#0      TCTGGCTAGGACTAAACTTGCCTTCCAGGTCAATAGTTCAGACCAAATCAGTAGTGGTTT 780
consensus_13475#1      ------------------------------------------------------------
                                                                                   

consensus_13475#0      GAAGAGGACAAACTTTCAACCAAAATATGGAGGAATAAAGGATGTTTTTCGAGGTGTTTA 840
consensus_13475#1      ------------------------------------------------------------
                                                                                   

consensus_13475#0      TTCAGAAGGTGGAGTGCGAGCTCTCTATCGTGGAGTAGGTCCAACGCTCATGGGAATACT 900
consensus_13475#1      --------GTGGAGTGCGAGCTCTTTATCGTGGAGTAGGTCCAACGCTCATGGGAATACT 52
                               **************** ***********************************

consensus_13475#0      TCCTTATGCTGGTCTTAAATTCTACATATACGAAGGACTGAAGGCACATGTACCTGAAGA 960
consensus_13475#1      TCCTTATGCTGGTCTTAAATTCTACATATACGAAGGACTGAAGGCACATGTACCTGAAGA 112
                       ************************************************************

consensus_13475#0      TTACAAAAATTCTGTCACATTGAAGTTGTCCTGTGGTGCTGCTGCTGGATTATTTGGGCA 1020
consensus_13475#1      TTACAAAAATTCTGTCACATTGAAGTTGTCCTGTGGTGCTGCTGCTGGATTATTTGGGCA 172
                       ************************************************************

consensus_13475#0      GACTCTAACTTACCCACTAGATGTTGTAAGAAGGCAGATGCAGGTTCAGAGTCAACAATA 1080
consensus_13475#1      GACTCTAACTTACCCACTAGATGTTGTAAGAAGGCAGATGCAGGTTCAGAGTCAACAATA 232
                       ************************************************************

consensus_13475#0      TCACGATAAATTTGGTGGGCCACAGATAAGGGGAACATTCCAAGGTCTTATGATCATCAA 1140
consensus_13475#1      TCACGATAAATTTGGTGGGCCACAGATAAGGGGAACATTCCAAGGTCTTATGATCATCAA 292
                       ************************************************************

consensus_13475#0      ACAAACGCAGGGATGGAGGCAATTGTTTGCTGGCTTGAGCCTCAATTACATCAAGGTGGT 1200
consensus_13475#1      ACAACCGCAGGGATGGAGGCAATTGTTTGTTGGCTTGAGCCTCAATTACATCAAGGTGGT 352
                       **** ************************ ******************************

consensus_13475#0      ACCCTCTGTGGCTATTGGTTTTACCGCATATGACACGATGAAGAGTTTACTGAAGATACC 1260
consensus_13475#1      ACCCTCTGTGGTTATTGGTTTTACCGCACATGACACGATGAAGAGTTTACTGAAGATCCC 412
                       *********** **************** **************************** **

consensus_13475#0      TCCCAGAGAGAAGAAAATGTCAGGTCATGGTTCTAATTGAAGTTTCTATCCATCCGTAAG 1320
consensus_13475#1      TCCCAGAGAGAAGAAAATGCCAGGTCATGGTTATAAAAGAAGCCCCCCCCCCCCCCCAAG 472
                       ******************* ************ ***  ****   *   **  **  ***

consensus_13475#0      AAACATGGAGCAGGGCAAGGTTCTCTTTCAAGATTTTATCAAGTGCCTTTTGTGAAGTCA 1380
consensus_13475#1      CCACACAAGGGGGGCGGAGGACCCCCTCAAGGATCTCACCGGACG------GGGGCGGCC 526
                         ***    *  **   ***  * * *  * *** * * *    *      * *  * * 

consensus_13475#0      CAATTG--TATAAAGCCTCTGAGGTT-CAATCTTGTCAAGTAGTAATTGTGTTAACTAAC 1437
consensus_13475#1      CGTTTAGCCCTCCGGCCTCCGCCGCCGCCGCCGCCGCCGGATTTGACCGCGGCGAC-GAC 585
                       *  **     *   ***** *  *   *   *    *  *   * *  * *   **  **

consensus_13475#0      AAGCTTACATATTCTTCCGATTCATTATTTTCATTCA-TTACATCCACCAGATGTGGAAC 1496
consensus_13475#1      CTGCGCGGAATGGCTCGCGGTTTCTTGCGCGTATCCCCTTCCCTGCGAAGAATCGAGAAA 645
                         **    *    **  ** **  **      ** *  ** * * *     **   *** 

consensus_13475#0      GTTGTAAATTTGTAGGGTGCTACCACAACTTTTAGGATGCTACAAAAGGTTTCAAAATTC 1556
consensus_13475#1      ACAATAGAGGAGAGGGGC------------------------------------------ 663
                           ** *   *  ***                                           

consensus_13475#0      CATACGGGTTTTCCCATAAAAAATGACCTACTCCTCCAGAGCTGTTTATTGCTAAAAATA 1616
consensus_13475#1      ------------------------------------------------------------
                                                                                   

consensus_13475#0      TTTTATGCATAGGGTTTTAGTTCTTCCTCGCCAAGGATTTGGATTAATACGAATGTATAT 1676
consensus_13475#1      ------------------------------------------------------------
                                                                                   

consensus_13475#0      TAGCATGTGTAAAACTATTAATATTGTTTACCATCCAAACTATAAGCTGTTTGGAGGATT 1736
consensus_13475#1      ------------------------------------------------------------
                                                                                   

consensus_13475#0      TTTAAAAAA 1745
consensus_13475#1      ---------
                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)