These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13496#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1319 fasta sequence [TGGAGTTCGGCGAGCCGTTCCGCTTCGGCCTGGAGGCGGCTCCAAGCCCGAGCTGCTGCTCGCCATGAGCTGCCTCGCCGCGCGCGGCAACCCGGACGCCCTGCTCATCTGCAACGGCTACAAGGACGACGAGTACGTCTCGCTCGCGCTCATCGCGCGCACCATGGGGCTCAACACGGTCATCGTGCTCGAGCAGGAGGAGGAGCTCGACATTGTGGTCGACGCTAGCCGCCGCCTCGGCGTGCGCCCGGTGGTCGGCATGCGCGCCAAGCTGCGCACCAAGCACGCCGGCCACNTCGGCTCCACGTCCGGGGAGAAGGGCAAGTTCGGCCTCAACGCCGCGCAGATTCTCTCCGTCGTCGCCAAGCTCAAGACCCTTGGTATG-CTCGACTGCCTCCAGCTCCTGCAC-TTCCACATTGGCTCCCAGATCCCGACCACTGCTCTGCTCGGCGATGGCGTCGGGGAGGCCGCGCAGATCTACTGCGAGCTCGCCCGCCTGGGCGCGGCCATGCGCGTCATCGACGTTGGTGGAGGCCTCGGCATTGACTACGACGGGAGTCACTCGGCGCAGACCGACATGTCCGTGGCATACAGCTTGGAGGAGTACGCGGCGGCCGTGGTGGCCGCCGTCGGCCGCGTCTGTGACCGCAAGGGCGTCGCGCATCCCATCATCTGCAGCGAGAGCGGCCGCGCGCTGGTGTCGCACCACTCTGTCCT-GGTGTTCGAGGCCTTCTCGGCTTCGGCGCCCGGCCGCATTGACCCGGCCACGGGCTACCTGCTCGACGAGCTCACCGACGACTGCCACGCCGACTACCGCAACCTCATGGCCGCCGCGGTGCGCGGCGAC-TTCGACACCTGCGCTCTGTACGCCGACCAGCTGAAGCGGCGCTGCGCCGATCAGTTCAAGGACGGCGTTCTTGGCCTGGAGCACCTCGCCGCGGTGGACAGCCTCTGCG-AGATCGTCGCCCGCGGCATGGGCGCCGCCGAGCCGCCGCGCACGTACCACATCAACCTGTCCGTGTTCACCTCCCTGCCGGACATGTGGGCGATCGGGCAGATGTTCCCGATCATCCCAATCCAGCGCCTCGGTGAGCGCCCTGCGGTC-GACGGC-GTCCTCTCCGACCTCACCTGCGACAGCGACGGCAAGGTCGACCACTTCATCGGCGGGAGGCACAGCCTGCCGCTGCACGAGCTCCCCGTCCACGGCACCGCGGCTACTNCCTCGGCATGTTCCTCGGCGGCGCCTACCANGANGCCTCGGGGGCCTCCACAACCTGTTCGGCNGGCCNAACGTNGTNCGCGTGTCCANAACGACGGGC] [+] EMBL AU078261 [TGGAGTTCGGCGAGCCGTTCCGCTTCGGCCTGGAGGCGGCTCCAAGCCCGAGCTGCTGCTCGCCATGAGCTGCCTCGCCGCGCGCGGCAACCCGGACGCCCTGCTCATCTGCAACGGCTACAAGGACGACGAGTACGTCTCGCTCGCGCTCATCGCGCGCACCATGGGGCTCAACACGGTCATCGTGCTCGAGCAGGAGGAGGAGCTCGACATTGTGGTCGACGCTAGCCGCCGCCTCGGCGTGCGCCCGGTGGTCGGCATGCGCGCCAAGCTGCGCACCAAGCACGCCGGCCACNTCGGCTCCACGTCCGGGGAGAAGGGCAAGTTCGGCCTCAACGCCGCGCAGATTCTCTCCGTCGTCGCCAAGCTCAAGACCCTTGGTATGACTCGACTGCCTCCAGCTCCTGCACTTTCCACATTGGCTCCCAGATCCCGACCACNGCTCTGCTtcg ] [+] EMBL CA754598 [ GCTCGAGCAGGAGGAGGAGCTCGACATTGTGGTCGACGCTAGCCGCCGCCTCGGCGTGCGCCCGGTGGTCGGCATGCGCGCCAAGCTGCGCACCAAGCACGCCGGCCACTTCGGCTCCACGTCCGGGGAGAAGGGCAAGTTCGGCCTCAACGCCGCGCAGATTCTCTCCGTCGTCGCCNAGCTCAAGACCCTTGGTATG CTCGACTGCCTCCAGCTCCTGCAC TTCCACATTGGCTCCCAGATCCCGACCACTGCTCTGCTCGGCGATGGCGTCGGGGAGGCCGCGCAGATCTACTGCGAGCTCGCCCGCCTGGGCGCGGCCATGCGCGTCATCGACGTTGGTGGAGGCCTCGGCATTGACTACGACGGGAGTCACTCGGCGCAGACCGACATGTCCGTGGCATACAGCTTGGAGGAGTACGCGGCGGCCGTGGTGGCCGCCGTCGGCCGCGTCTGTGACCGCAAGGGCGTCGCGCATCCCATCATCTGCAGCGAGAGCGGCCGCGCGCTGGTGTCGCACCACTCTGTCCTGGGTG TCGAGGGCTTCTCGGNTTCGGCGCCCGGCCGCATTGACCCGGNCACGGCCTACCTGCTCGACGAGgt ] [+] EMBL AU078262 [ AAGGGCAAGTTCGGCCTCAACGCCGCGCAGATTCTCTCCGTCGTCGCCAAGCTCAAGACCCTTGGTATG CTCGACTGCCTCCAGCTCCTGCAC TTCCACATTGGCTCCCAGATCCCGACCACTGCTCTGCTCGGCGATGGCGTCGGGGAGGCCGCGCAGATCTACTGCGAGCTCGCCCGCTTGGGCGCGGCNATGCGCGTCATCGACGTTGGTGGAGGCCTCGGNATTGACTACGACGGGAGTCACTCGGCGCAGACCGACATGTCCGTGGCATACAGCTTGGAGGNGTACGC GCGGCCGTGGTGGCCGCCGTCGGCCGCGTCTGTGACCGCAAGGGCGTCGCGCATCCCATCATCTGCAGC ] [+] EMBL AU078207 [ TCTCCGTCGTCGCCAAGCTCAAGACCCTTGGTATG CTCGACTGCCTCCAGCTCCTGCAC TTCCACATTGGCTCCCAGATCCCGACCACTGCTCTGCTCGGCGATGGCGTCGGGGAGGCCGCGCAGATCTACTGCGAGCTCGCCCGCCTGGGCGCGGCCATGCGCGTCATCGACGTTGGTGGAGGCCTCGGCATTGACTACGACGGGAGTCACTCGGCGCAGACCGACATGTCCGTGGCATACAGCTTGGAGGAGTACGCGGCGGCCGTGGTGGCCGCCGTCGGCCGCGTCTGTGACCGCAAGGGCGTCGCGCATCCCATCATC ] [+] EMBL AU078208 [ TG CTCGACTGCCTCCAGCTCCTGCAC TTCCACATTGGCTCCCAGATCCCGACCACTGCTCTGCTCGGCGATGGCGTCGGGGAGGCCGCGCAGATCTACTGCGAGCTCGCCCGCCTGGGCGCGGCCATGCGCGTCATCGACGTTGGTGGAGGCCTCGGCATTGACTACGACGGGAGTCACTCGGCGCAGACCGACATGTCCGTGGCATACAGCTTGGAGGAGTACGC GCGGCCGTGGTGGCCGCCGTCGGCCGCGTCTGTGACCGCAAGGGCGTCGCGCATCCCATCATCTGCAGC ] [+] EMBL CB653383 [ nACGGGCGTCTCTCGGCGCAGACCGACATGTCCGTGGCATACAGCTTGGAGGAGTACGCGGCGGCCGTGGTGGCCGCCGTCGGCCGCGTCTGTGACCGCAAGGGCGTCGCGCATCCCATCATCTGCAGCGAGAGCGGCCGCGCGCTGGTGTCGCACCACTCTGTCCT GGTGTTCGAGGCCTTCTCGGCTTCTGCGCCCGGCCGCATTGACCCGGCCACGGGCTACCTGCTCGACGAGCTCACCGACGACTGCCACGCCGACTACCGCAACCTCATGGCCGCCGCGGTGCGCGGCGAC TTCGACACCTGCGCTCTGTACGCCGACCATCTGAAGCGGCGCTGCGCCGATCAGTTCAAGGACGGCGTTCTTGGCCTGGAGCACCTCGCCGCGGTGGACAGCCTCTGCG AGATCGTCGCCCGCGGCATGGGCGCCGCCGAGCCGCCGCGCACGTACCACATCAACCTGTCCGTGTTCACCTCCCTGCCGGACATGTGGGCGATCGGGCAGATGTTCCCGATCATCCCAATCCAGCGCCTCGGTGAGCGCCCTGCGGTC GACGGC GTCCTCTCCGACCTCACCTGCGACAGCGACGGCAAGGTCGACCACTTCATCGGCGGGAGGCACAGCCTGCCGCTG ] [+] EMBL AU056474 [ CTGGTGTCGCACCACTCTGTCCT GGTGTTCGAGGCCTTCTCGGCTTCGGCGCCCGGCCGCATTGACCCGGCCACGGGCTACCTGCTCGACGAGCTCACCGACGACTGCCACGCCGACTACCGCAACCTCATGGCCGCCGCGGTGCGCGG GACTTTCGACACCTGCGCTCTGTACGCCGACCAGCTGAAGCGGCGCTGCGCCGATCAGTTCAAGGACGGCGTTCTTGGCCTGGAGCACCTCGCCGCGGTGGACAGCCTCTGCG AGATCGTCGCCCGCGGCATGGGCGCCGCCGAGCCGCCGCGCACGTACCACATCAACCTGTCCGTGTTCACCTCCCTGCCGGACATGTGGGCGATCGGGCAGATGTTCCCGATCATCCCAATCCAGCGCCTCGGTGA ] [+] EMBL C99671 [ GTGTCGCACCACTCTGTCCT GGTGTTCGAGGCCTTCTCGGCTTCGGCGCCCGGCCGCATTGACCCGGNCACGGGCTACCTGCTCGACGAGCTCACCGACGACTGCCACGCCGACTACCGCAACCTCATGGCCGCCGCGGTGCGCGG GACNTTCGACACCTGCGCTCTGTACGCCGACCAGCTGAAGCGGCGCTGCGCCGATCAGTTCAAGGACGGCGTTCTTGGCCTGGAGCACCTCGCCGCGGTGGACAGCCTCTGCG AGATCGTCGCCCGCGGCATGGGCGCCGCCGAGCCGCCGCGCACGTACCACATCAACCTGTCCGTGTTCACCTCCCTGCCGGACATGTGGGCGATCGGGCAGATGTTCCCGATCATCCCAATCCAGCGCCTCGGTGAGCGCCCTGCGGTC GACGGC GTCCTCTCCGACCTCACC ] [+] EMBL AU078278 [ TGTCGCA CACTCTGTCCT GGTGTTCGAGGCCTTCTCGGCTTCGGCGCCCGGCCGCATTGACCCGGCCAC GCTACCTGCTCGACGAGCTCACCGACGACTGCCACGCCGACTACCGCAACCTCATGGCCGCCGCGGTGCGC GANCT TTCGACACCTGCGCTCTGTACGCCGACCAGCTGAAGCGGCGCTGCGCCGATCAGTTCAAGGACGGCGTTCTTGGCCTGGAGCACCTCGCCGCGGTGGACAGCCTCTGCG AGATCGTCGCCCGCGGCATGGGCGCCGCCGAGCCGCCGCGCACGTACCACATCAACCTGTCCGTGTTCACCTCCCTGCCGGACATGTGGGCGATCGGGCAGATGTTCCCGATCATCCCAATCCAGCGCCTCGGTGAGCGCCCTGCGGTCGGACGGCAGTCCTCTCC ] [+] EMBL AU078180 [ TCGCACCACTCTGTCCT GGTGTTCGAGGCCTTCTCGGCTTCGGCGCCCGGCCGCATTGACCCGGCCACGGGCTACCTGCTCGACGAGCTCACCGACGACTGCCACGCCGACTACCGCAACCTCATGGCCGCCGCGGTGCGCGGCGAC TTCGACACCTGCGCTCTGTACGCCGACCAGCTGAAGCGGCGCTGCGCCGATCAGTTCAAGGACGGCGTTCTTGGCCTGGAGCACCTCGCCGCGGTGGACAGCCTCTGCG AGATCGTCGCCCGCGGCATGGGCGCCGCCGAGCCGCCGCGCACGTACCACATCAACCTGTCCGTGTTCACCTCCCTGCCGGACATGTGGGCGATCGGGCAGATGTTCCCGATCATCCCAATCCAGCGCCTCGGTGAGCGCCCTGCGGTC G ] [-] EMBL AU078181 [ CGCACCACTCTGTCCT GGTGTTCGAGGCCTTCTCGGCTTCGGCGCCCGGCCGCATTGACCCGGCCACGGGCTACCTGCTCGACGAGCTCACCGACGACTGCCACGCCGACTACCGCAACCTCATGGCCGCCGCGGTGCGCGGCGAC TTCGACACCTGCGCTCTGTACGCCGACCAGCTGAAGCGGCGCTGCGCCGATCAGTTCAAGGACGGCGTTCTTGGCCTGGAGCACCTCGCCGCGGTGGACAGCCTCTGCG AGATCGTCGCCCGCGGCATGGGCGCCGCCGAGCCGCCGCGCACGTACCACATCAACCTGTCCGTGTTCACCTCCCTGCCGGACATGTGGGCGATCGGGCAGATGTTCCCGATCATCCCAATCCAGCGCCTCGGTGAGCGCCCTGCGGTC GACGGC GTCCTCTCCGACCTCACCTGCGACAGCGACGGCAAGGTCGACCACTTCATCGGCGGGAGGCACAGCCTGCCGCTGCACGAGCTCCCCGTCCACG ] [+] EMBL BE228623 [ GACCAGCTGAAGCGGCGCTGCGCCGATCAGTTCAAGGACGGNGTTCTTGGCCTGGAGCACCTCGCCGCGGTGGACAGCCTCTGCGAAGATCGTCGCCCGCGGCATGGGCGCCGCCGAGCCGCCGCGCACGTACCACATCAACCTGTCCGTGTTCACCTCCCTGCCGGACATGTGGGCGATCGGGCAGATNTTCCCGATCATCCCAATCCAGCGCCTCGGTGAGCGCCCTGCGGTC NACGGC GTCCTCTCCGAACTCACCTGCGACAGC ACGGCAA GTCGACCACTTCATCGGCGGGAGGCACAGCCTGCCGCTGCACGAGCT CCCGTCCACGGCACCGCGGCTACTNCCTCGGCATGTTCCTCGGCGGCGCCTACCANGANGCCTCGGGGGCCTCCACAACCTGTTCGGCNGGCCNAACGTNGTNCGCGTGTCCANAACGACGGGC] consensusID : consensus_13496#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 202 fasta sequence [TCGCACCACTCTGTCCTGGTGTTCGAGGCCTNNNNGGCTTCGGCGCCCGNCNGCATTGACCCGGCCACGGCTACCTANTCGACGAGCTCACCGACGACTGCNACGCCGACTACCGCAACCTCATGGCCGCCGCGGTGCNCGCGANCTTCNACACNTGCNCTCTGTACGCCGACCAGCTGAAGCGGCGCTGCGCCGATCAGTT] [+] EMBL AU078730 [TCGCACCACTCTGTCCTGGTGTTCGAGGCCTNNNNGGCTTCGGCGCCCGNCNGCATTGACCCGGCCACGGCTACCTANTCGACGAGCTCACCGACGACTGCNACGCCGACTACCGCAACCTCATGGCCGCCGCGGTGCNCGCGANCTTCNACACNTGCNCTCTGTACGCCGACCAGCTGAAGCGGCGCTGCGCCGATCAGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13496#0 TGGAGTTCGGCGAGCCGTTCCGCTTCGGCCTGGAGGCGGCTCCAAGCCCGAGCTGCTGCT 60 consensus_13496#1 ------------------------------------------------------------ consensus_13496#0 CGCCATGAGCTGCCTCGCCGCGCGCGGCAACCCGGACGCCCTGCTCATCTGCAACGGCTA 120 consensus_13496#1 ------------------------------------------------------------ consensus_13496#0 CAAGGACGACGAGTACGTCTCGCTCGCGCTCATCGCGCGCACCATGGGGCTCAACACGGT 180 consensus_13496#1 ------------------------------------------------------------ consensus_13496#0 CATCGTGCTCGAGCAGGAGGAGGAGCTCGACATTGTGGTCGACGCTAGCCGCCGCCTCGG 240 consensus_13496#1 ------------------------------------------------------------ consensus_13496#0 CGTGCGCCCGGTGGTCGGCATGCGCGCCAAGCTGCGCACCAAGCACGCCGGCCACNTCGG 300 consensus_13496#1 ------------------------------------------------------------ consensus_13496#0 CTCCACGTCCGGGGAGAAGGGCAAGTTCGGCCTCAACGCCGCGCAGATTCTCTCCGTCGT 360 consensus_13496#1 ------------------------------------------------------------ consensus_13496#0 CGCCAAGCTCAAGACCCTTGGTATGCTCGACTGCCTCCAGCTCCTGCACTTCCACATTGG 420 consensus_13496#1 ------------------------------------------------------------ consensus_13496#0 CTCCCAGATCCCGACCACTGCTCTGCTCGGCGATGGCGTCGGGGAGGCCGCGCAGATCTA 480 consensus_13496#1 ------------------------------------------------------------ consensus_13496#0 CTGCGAGCTCGCCCGCCTGGGCGCGGCCATGCGCGTCATCGACGTTGGTGGAGGCCTCGG 540 consensus_13496#1 ------------------------------------------------------------ consensus_13496#0 CATTGACTACGACGGGAGTCACTCGGCGCAGACCGACATGTCCGTGGCATACAGCTTGGA 600 consensus_13496#1 ------------------------------------------------------------ consensus_13496#0 GGAGTACGCGGCGGCCGTGGTGGCCGCCGTCGGCCGCGTCTGTGACCGCAAGGGCGTCGC 660 consensus_13496#1 ------------------------------------------------------------ consensus_13496#0 GCATCCCATCATCTGCAGCGAGAGCGGCCGCGCGCTGGTGTCGCACCACTCTGTCCTGGT 720 consensus_13496#1 ----------------------------------------TCGCACCACTCTGTCCTGGT 20 ******************** consensus_13496#0 GTTCGAGGCCTTCTCGGCTTCGGCGCCCGGCCGCATTGACCCGGCCACGGGCTACCTGCT 780 consensus_13496#1 GTTCGAGGCCTNNNNGGCTTCGGCGCCCGNCNGCATTGACCCGGCCACGG-CTACCTANT 79 *********** ************** * ****************** ****** * consensus_13496#0 CGACGAGCTCACCGACGACTGCCACGCCGACTACCGCAACCTCATGGCCGCCGCGGTGCG 840 consensus_13496#1 CGACGAGCTCACCGACGACTGCNACGCCGACTACCGCAACCTCATGGCCGCCGCGGTGCN 139 ********************** ************************************ consensus_13496#0 CGGCGACTTCGACACCTGCGCTCTGTACGCCGACCAGCTGAAGCGGCGCTGCGCCGATCA 900 consensus_13496#1 CGCGANCTTCNACACNTGCNCTCTGTACGCCGACCAGCTGAAGCGGCGCTGCGCCGATCA 199 ** **** **** *** **************************************** consensus_13496#0 GTTCAAGGACGGCGTTCTTGGCCTGGAGCACCTCGCCGCGGTGGACAGCCTCTGCGAGAT 960 consensus_13496#1 GTT--------------------------------------------------------- 202 *** consensus_13496#0 CGTCGCCCGCGGCATGGGCGCCGCCGAGCCGCCGCGCACGTACCACATCAACCTGTCCGT 1020 consensus_13496#1 ------------------------------------------------------------ consensus_13496#0 GTTCACCTCCCTGCCGGACATGTGGGCGATCGGGCAGATGTTCCCGATCATCCCAATCCA 1080 consensus_13496#1 ------------------------------------------------------------ consensus_13496#0 GCGCCTCGGTGAGCGCCCTGCGGTCGACGGCGTCCTCTCCGACCTCACCTGCGACAGCGA 1140 consensus_13496#1 ------------------------------------------------------------ consensus_13496#0 CGGCAAGGTCGACCACTTCATCGGCGGGAGGCACAGCCTGCCGCTGCACGAGCTCCCCGT 1200 consensus_13496#1 ------------------------------------------------------------ consensus_13496#0 CCACGGCACCGCGGCTACTNCCTCGGCATGTTCCTCGGCGGCGCCTACCANGANGCCTCG 1260 consensus_13496#1 ------------------------------------------------------------ consensus_13496#0 GGGGCCTCCACAACCTGTTCGGCNGGCCNAACGTNGTNCGCGTGTCCANAACGACGGGC 1319 consensus_13496#1 ----------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||