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Oryza sativa
cluster # 13504 cluster # 13504       Sequences # 13       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13504#0 length = 1186 sequences # 7  
consensus_13504#1 length = 720 sequences # 2  
consensus_13504#2 length = 432 sequences # 1  
consensus_13504#3 length = 373 sequences # 3  

consensusID : consensus_13504#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1186
fasta sequence
                              [AGCGCGCTAGTGGTTGAGCTCAATGGCTCGCCGCGACGGCGTCGGCGGCGACGGCGGCGCGTCGGCGGCGGAGCAGCAGCGGAGAGTAGCGCTGCGTGTGCTGCTGTCCCGTGCGGAGGCTTCCTCGCCGCCGCCGGCGACGGTGGAGGAGGAGGCGCAGCGGGGGAGGAGCGGTGGTGGTAACAAGGGGCTCGCGTCGGCGGCGCTGCGCGGGCTCGGGTGCACGTCGACGGCGGCGCTGCGTGCCCACGCGCCGGCTTCGGCGGTGGAGGTGGCGAGTAGCTCGGAGCGGTGGCACGGGAGGCGGCGGCGGAGGAAGGTGCAGGAGAGCCGGCCGCTCCTCGAGCTCGAAGGGTGACCATGCGTGAGCACATATCCTCGTCGCTCATGGACTCGCCGCCGTTCCCCGACATGCCGCTCCTCAACGCCGACCTGCTACCACCACCACCCTCCGGCCGCCACCGCCATGGATACCGCCACCCCCACGTCGGCGCCGCCGAGGAAGAGATCATGATGTTAAGAACACGGCTATTATGGGGAAGATTCGGTATGCATGATCAGCACCAGGATTGGCGACTCGACGTTGACAACATGACATATGAGGAGCTGCTGGATCTTGAAGACAGAATTGGGTATGTAAGCACAGGGTTGCATGACGATGAAATCGCTCGCAGCCTTAGGATGGTCAAGTATTCAGCATTCAACCCCAAGCATTTTGCAACAGAAGTAGAAAGGAATTGCAGTATTTGTCAGGAAGAATTTGAAGCAAATGAGGAAACAGGGAGGCTGATCTGTGGCCACAGCTATCATGTGCAATGCATAAAGCAGTGGCTTTCTAGGAAGAACACCTGCCCTGTCTGCAAAACTGTTGTATCGAAGACATGAAATCCAATCAGTCCCTAAGCACACTTGAACTGAAAATTGTGAAAAGGACTTACTCTTTCACAGTGTTTGTTTGTGATTGTACAGCTCTGTTTGTACATGATGCTTTGTGTAAGCACAAGCCTGAAGCAAACCATCTCATTTGCATATAGAAATTTACATGTTTTCAGTTTTCCCAGTGTCTACTGAGTGTTAAGCATTTGCTTGTAGAAACTTACATGTTTTCAGTTTTCCCAGTGTGTACTGAATATTAATTC-AGGTGAAAG-AAAAAAAATAAGAAGAGAGATTTTTTTTAAAAAAAGAG]

[+] EMBL CB655169             [AGCGCGCTAGTGGTTGAGCTCAATGGCTCGCCGCGACGGCGTCGGCGGCGACGGCGGCGCGTCGGCGGCGGAGCAGCAGCGGAGAGTAGCGCTGCGTGTGCTGCTGTCCCGTGCGGAGGCTTCCTCGCCGCCGCCGGCGACGGTGGAGGAGGAGGCGCAGCGGGGGAGGAGCGGTGGTGGTAACAAGGGGCTCGCGTCGGCGGCGCTGCGCGGGCTCGGGTGCACGTCGACGGCGGCGCTGCGTGCCCACGCGCCGGCTTCGGCGGTGGAGGTGGCGAGTAGCTCGGAGCGGTGGCACGGGAGGCGGCGGCGGAGGAAGGTGCAGGAGAGCCGGCCGCTCCTCGAGCTCGAAGGGTGACCATGCGTGAGCACATATCCTCGTCGCTCATGGACTCGCCGCCGTTCCCCGACATGCCGCTCCTCAACGCCGACCTGCTACCACCACCACCCTCCGGCCGCCACCGCCATGGATACCGCCACCCCCACGTCGGCGCCGCCGAGGAAGAGATCATGATGTTAAGAACACGGCTATTATGGGGAAGATTCGGTATGCATGATCAGCACCAGGATTGGCGACTCGACGTTGACAACATGACATATGAGGAGCTGCTGGATCTTGAAGACAGAATTGGGTATGTAAGCACAGGGTTGCATGACGATGAAATCGCTCGCAGCCTTANGATGGTCAAGTATTCAGCATTCAACCCCAAGCATTTTGCAACAGAAGTAGAAAGGAATTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CB655200             [AGCGCGCGAGTGGTTGAGCTCAATGGCTCGCCGCGACGGCGTCGGCGGCGACGGCGGCGCGTCGGCGGCGGAGCAGCAGCGGAGAGTAGCGCTGCGTGTGCTGCTGTCCCGTGCGGAGGCTTCCTCGCCGCCGCCGGCGACGGTGGAGGAGGAGGCGCAGCGGGGGAGGAGCGGTGGTGGTAACAAGGGGCTCGCGTCGGCGGCGCTGCGCGGGCTCGGGTGCACGTCGACGGCGGCGCTGCGTGCCCACGCGCCGGCTTCGGCGGTGGAGGTGGCGAGTAGCTCGGAGCGGTGGCACGGGAGGCGGCGGCGGAGGAAGGTGCAGGAGAGCCGGCCGCTCCTCGAGCTCGAAGGGTGACCATGCGTGAGCACATATCCTCGTCGCTCATGGACTCGCCGCCGTTCCCCGACATGCCGCTCCTCAACGCCGACCTGCTACCACCACCACCCTCCGGCCGCCACCGCCATGGATACCGCCACCCCCACGTCGGCGCCGCCGAGGAAGAGATCATGATGTTAAGAACACGGCTATTATGGGGAAGATTCGGTATGCATGATCAGCACCAGGATTGGCGACTCGACGTTGACAACATGACATATGAGGAGCTGCTGGATCTTGAAGACAGAATTGGGTATGTAAGCACAGGGTTGCATGACGATGAAATCGCTCGCAGCCTTAAGATGGTCAAGTATTCAGCATTCAACCCCAAGCATTTTGCAACAGAAGTAGAAAGGAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CB655201             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                CCTCCGGCCGCCACCGCCATGGATACCGCCACCCCCACGTCGGCGCCGCCGAGGAAGAGATCATGATGTTAAGAACACGGCTATTATGGGGAAGATTCGGTATGCATGATCAGCACCAGGATTGGCGACTCGACGTTGACAACATGACATATGAGGAGCTGCTGGATCTTGAAGACAGAATTGGGTATGTAAGCACAGGGTTGCATGACGATGAAATCGCTCGCAGCCTTAGGATGGTCAAGTATTCAGCATTCAACCCCAAGCATTTTGCAACAGAAGTAGAAAGGAATTGCAGTATTTGTCAGGAAGAATTTGAAGCAAATGAGGAAACAGGGAGGCTGATCTGTGGCCACAGCTATCATGTGCAATGCATAAAGCAGTGGCTTTCTAGGAAGAACACCTGCCCTGTCTGCAAAACTGTTGTATCGAAGACATGAAATCCAATCAGTCCCTAAGCACACTTGAACTGAAAATTGTGAAAAGGACTTACTCTTTCACAGTGTTTGTTTGTGATTGTACAGCTCTGTTTGTACATGATGCTTTGTGTAAGCACAAGCCTGAAGCAAACCATCTCATTTGCATATAGAAATTTACATGTTTTCAGTTTTCCCAGTGTCTACTGAGTGTTAAGCATTTGCTTGTAGAAACTTACATGTTTTCAGTTTTCCCAGTGTGTACTGAATATTAATTC AGGTGAAAG AAAAAAAATAAGAAGAGAGATTTTTTTTAAAAAAAGA ]
[-] EMBL CB655170             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CCATGGATACCGCCACCCCCACGTCGGCGCCGCCGAGGAAGAGATCATGATGTTAAGAACACGGCTATTATGGGGAAGATTCGGTATGCATGATCAGCACCAGGATTGGCGACTCGACGTTGACAACATGACATATGAGGAGCTGCTGGATCTTGAAGACAGAATTGGGTATGTAAGCACAGGGTTGCATGACGATGAAATCGCTCGCAGCCTTAGGATGGTCAAGTATTCAGCATTCAACCCCAAGCATTTTGCAACAGAAGTAGAAAGGAATTGCAGTATTTGTCAGGAAGAATTTGAAGCAAATGAGGAAACAGGGAGGCTGATCTGTGGCCACAGCTATCATGTGCAATGCATAAAGCAGTGGCTTTCTAGGAAGAACACCTGCCCTGTCTGCAAAACTGTTGTATCGAAGACATGAAATCCAATCAGTCCCTAAGCACACTTGAACTGAAAATTGTGAAAAGGACTTACTCTTTCACAGTGTTTGTTTGTGATTGTACAGCTCTGTTTGTACATGATGCTTTGTGTAAGCACAAGCTTGAAGCAAACCATCTCATTTGCATATAGAAATTTACATGTTTTCAGTTTTCCCAGTGTCTACTGAGTGTTAAGCATTTGCTTGTAGAAACTTACATGTTTTCAGTTTTCCCAGTGTGTACTGAATATTAATTCTAGGAGGGGG AAAAAAAATAAGAAGAGAGATTTTTTTTAAATAAAAAG]
[-] EMBL CB658845             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CACGTCGGCGCCGCCGAGGAAGAGATCATGATGTTAAGAACACGGCTATTATGGGGAAGATTCGGTATGCATGATCAGCACCAGGATTGGCGACTCGACGTTGACAACATGACATATGAGGAGCTGCTGGATCTTGAAGACAGAATTGGGTATGTAAGCACAGGGTTGCATGACGATGAAATCGCTCGCAGCCTTAGGATGGTCAAGTATTCAGCATTCAACCCCAAGCATTTTGCAACAGAAGTAGAAAGGAATTGCAGTATTTGTCAGGAAGAATTTGAAGCAAATGAGGAAACAGGGAGGCTGATCTGTGGCCACAGCTATCATGTGCAATGCATAAAGCAGTGGCTTTCTAGGAAGAACACCTGCCCTGTCTGCAAAACTGTTGTATCGAAGACATGAAATCCAATCAGTCCCTAAGCACACTTGAACTGAAAATTGTGAAAAGGACTTACTCTTTCACAGTGTTTGTTTGTGATTGTACAGCTCTGTTTGTACATGATGCTTTGTGTAAGCACAAGCCTGAAGCAAACCATCTCATTTGCATATAGAAATTTACATGTTTTCAGTTTTCCCAGTGTCTACTGAGTGTTAAGCATTTGCTTGTAGAAACTTACATGTTTTCAGTTTTCCCAGTGTGTACTGAATATTAATTC AGGTGAAAG AAGAAAAATAAGAAGAGAGATTTTTTTTt         ]
[+] EMBL CA764245             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      aggggGATCAGCACCAGGATTGGCGACTCGACGCTGACAACATGACATATGAGGAGCTGCTGGATCTTGAAGACAGAATTGGGTATGTAAGCACAGGGTTGCATGACGATGAAATCGCTCGCAGCCTTAGGATGGTCAAGTATTCAGCATTCAACCCCAAGCATTTTGCAACAGAAGTAGAAAGGAATTGCAGTATTTGTCAGGAGGAATTTGAAGCAAATGAGGAAACAGGGAGGCTGATCTGTGGCCACAGCTATCATGTGCAATGCATAAAGCAGTGGCTTTCTAGGAAGAACACCTGCCCTGTCTGCAAAACTGTTGTATCGAAGACATGAAATCCAATCAGTCCCTAAGCACACTTGAACTGAAAATTGTGAAAAGGACTTACTCTTTCACAGTGTTTGTTTGTGATTGTACAGCTCTGTTTGTACATGATGCTTTGTGTAAGCACAAGCCTGAGGCAAACCATCTCATTTGCATATAGAAATTTACATGTTTTCAGTTTTCCCAGTGTCTACTGAGTGTTAAGCATTTGCTTGTAGAAACTTACATGTTTTCAGTTTTCCCAGTGTCTACTGAATAT                                                       ]
[+] EMBL CA764117             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     aggggGAAGACAGAATTGGGTATGTAAGCACAGGGTTGCATGACGATGAAATCGCTCGCAGCCTTAGGATGGTCAAGTATTCAGCATTCAACCCCAAGCATTTTGCAACAGAAGTAGAAAGGAATTGCAGTATTTGTCAGGAAGAATTTGAAGCAAATGAGGAAACAGGGAGGCTGATCTGTGGCCACAGCTATCATGTGCAATGCATAAAGCAGTGGCTTTCTAGGAAGAACACCTGCCCTGTCTGCAAAACTGTTGTATCGAAGACATGAAATCCAATCAGTCCCTAAGCACACTTGAACTGAAAATTGTGAAAAGGACTTACTCTTTCACAGTGTTTGTTTGTGATTGTACAGCTCTGTTTGTACATGATGCTTTGTGTAAGCACAAGCCTGAAGCAAACCATCTCATTTGCATATAGAAATTTACATGTCTTCAGTTTTCCCAGTGTCTACTGAGTGTTAAGCATTTGCTTGTAGAAACTTGCATGTTTTCAGTTTTCCCAGTGTCTACTGAATATTAATAC AGGTGAAAGAAAAAAAAATAAGAAGAGAGATTTT              ]


>consensus_13504#0 AGCGCGCTAGTGGTTGAGCTCAATGGCTCGCCGCGACGGCGTCGGCGGCGACGGCGGCGC GTCGGCGGCGGAGCAGCAGCGGAGAGTAGCGCTGCGTGTGCTGCTGTCCCGTGCGGAGGC TTCCTCGCCGCCGCCGGCGACGGTGGAGGAGGAGGCGCAGCGGGGGAGGAGCGGTGGTGG TAACAAGGGGCTCGCGTCGGCGGCGCTGCGCGGGCTCGGGTGCACGTCGACGGCGGCGCT GCGTGCCCACGCGCCGGCTTCGGCGGTGGAGGTGGCGAGTAGCTCGGAGCGGTGGCACGG GAGGCGGCGGCGGAGGAAGGTGCAGGAGAGCCGGCCGCTCCTCGAGCTCGAAGGGTGACC ATGCGTGAGCACATATCCTCGTCGCTCATGGACTCGCCGCCGTTCCCCGACATGCCGCTC CTCAACGCCGACCTGCTACCACCACCACCCTCCGGCCGCCACCGCCATGGATACCGCCAC CCCCACGTCGGCGCCGCCGAGGAAGAGATCATGATGTTAAGAACACGGCTATTATGGGGA AGATTCGGTATGCATGATCAGCACCAGGATTGGCGACTCGACGTTGACAACATGACATAT GAGGAGCTGCTGGATCTTGAAGACAGAATTGGGTATGTAAGCACAGGGTTGCATGACGAT GAAATCGCTCGCAGCCTTAGGATGGTCAAGTATTCAGCATTCAACCCCAAGCATTTTGCA ACAGAAGTAGAAAGGAATTGCAGTATTTGTCAGGAAGAATTTGAAGCAAATGAGGAAACA GGGAGGCTGATCTGTGGCCACAGCTATCATGTGCAATGCATAAAGCAGTGGCTTTCTAGG AAGAACACCTGCCCTGTCTGCAAAACTGTTGTATCGAAGACATGAAATCCAATCAGTCCC TAAGCACACTTGAACTGAAAATTGTGAAAAGGACTTACTCTTTCACAGTGTTTGTTTGTG ATTGTACAGCTCTGTTTGTACATGATGCTTTGTGTAAGCACAAGCCTGAAGCAAACCATC TCATTTGCATATAGAAATTTACATGTTTTCAGTTTTCCCAGTGTCTACTGAGTGTTAAGC ATTTGCTTGTAGAAACTTACATGTTTTCAGTTTTCCCAGTGTGTACTGAATATTAATTCA GGTGAAAGAAAAAAAATAAGAAGAGAGATTTTTTTTAAAAAAAGAG



consensusID : consensus_13504#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 720
fasta sequence
                              [GCGTGAGCACATATCCTCGTCGCTCATGGACTCGCCGCCGTTCCCCGACATGCCGCTCCTCAACGCCGACCTGTTACCACCACCACCCTCCGGCCGCCACCGCCATGAGATACCGCCACCCCCACGTCGGCGCCGCCGAGGAAGAGATCATGATGTTAAGAACACGGCTATTATGGGGAAGATTCGGTATGCATGATCAGCACCAGGATTGGCGACTCGACGTTGACAACATGACATATGAGGAGCTGCTGGATCTTGAAGACAGAATTGGGTATGTAAGCA-CA-GGGTTGCATGACGATGAAATCGCTCGCAG-CCTTAGGATGGTCAAGTATTCAGCATTCAACCCCAAGCATTTTGCAACAGAAGTAGAAAGGAATTGCAGTATTTGTCAGGAAGAATTTGAAGCA-AATGAGGAAA-CA-GGGAGGCTGATCTGTGGCCA-CAGCTATCATGTGCAATGCATAAAGCAGTGGCTTTCTAGGAAGAACACCTGCCCTGTCTGCAAAACTGTTGTATCGAAGACATGAAATCCAATCAGTCCCTAAGCACACTTGAACTGAAAATTGTGAAAAGGACTTACTCTTTCACAGTGTTTGTTTGTGATTGTACAGCTCTGTTTGTACATGATGCTTTGTGTAAGCACAAGCCTGAAGCAAACCATCTCATTTGCATATAGAAATTTACATGTTTTCAGTTTTCCCAGTGTCAAAAAAAAAAAAAAGA]

[-] EMBL CB656034             [GCGTGAGCACATATCCTCGTCGCTCATGGACTCGCCGCCGTTCCCCGACATGCCGCTCCTCAACGCCGACCTGTTACCACCACCACCCTCCGGCCGCCACCGCCATGAGATACCGCCACCCCCACGTCGGCGCCGCCGAGGAAGAGATCATGATGTTAAGAACACGGCTATTATGGGGAAGATTCGGTATGCATGATCAGCACCAGGATTGGCGACTCGACGTTGACAACATGACATATGAGGAGCTGCTGGATCTTGAAGACAGAATTGGGTATGTAAGCA CA GGGTTGCATGACGATGAAATCGCTCGCAG CCTTAGGATGGTCAAGTATTCAGCATTCAACCCCAAGCATTTTGCAACAGAAGTAGAAAGGAATTGCAGTATTTGTCAGGAAGAATTTGAAGCA AATGAGGAAA CA GGGAGGCTGATCTGTGGCCA CAGCTATCATGTGCAATGCATAAAGCAGTGGCTTTCTAGGAAGAACACCTGCCCTGTCTGCAAAACTGTTGTATCGAAGACATGAAATCCAATCAGTCCCTAAGCACACTTGAACTGAAAATTGTGAAAAGGACTTACTCTTTCACAGTGTTTGTTTGTGATTGTACAGCTCTGTTTGTACATGATGCTTTGTGTAAGCACAAGCCTGAAGCAAACCATCTCATTTGCATATAGAAATTTACATGTTTTCAGTTTTCCCAGTGTCAAAAAAAAAAAAAAGA]
[+] EMBL BQ906267             [                                                                                                                                                AGATCATGATGTTAAGAACACGGCTATTATGGGGAAGATTCGGTATGCATGATCAGCACCAGGATTGGCGACTCGACGTTGAC ACATGACATATGAGGAGCTGCTGGATCTTGAAGACAGAATTGGGTATGTAAGCACCACGGGTTGCATGACGATGAAATCGCTCGCAGCCCTTAGGATGGTCAAGTATTCAGCATTCAACCCCAAGCATTTTGCCACAGAAGTAGAAAGGAATTCCAGTATTTGTCAGGAAGAATTTGAAGCACAATGAGGAAACCACGGGAGGCTGATCTGTGGCCACCAGCTATCATGTGCAATGCATAAAGCAGTGGCTTTCTAGGAAGAACNCCTGCCCTGTCTGCAAAACTGTTGTATCGAAGACATGAAATCC ATCAGTCCCTAAGCACACNGGAACTGAAAATTGTGAAAAGGACTTACTCTTTCNCAGTGTTTGTTTGTGATTGTACAGCTCTGTTTGTACATGATGCTTTGTGTAAGCACAAGCCTGAANC AACCATCTCATTGGCATATAGAAATTTACANGTTTTCA                              ]


>consensus_13504#1 GCGTGAGCACATATCCTCGTCGCTCATGGACTCGCCGCCGTTCCCCGACATGCCGCTCCT CAACGCCGACCTGTTACCACCACCACCCTCCGGCCGCCACCGCCATGAGATACCGCCACC CCCACGTCGGCGCCGCCGAGGAAGAGATCATGATGTTAAGAACACGGCTATTATGGGGAA GATTCGGTATGCATGATCAGCACCAGGATTGGCGACTCGACGTTGACAACATGACATATG AGGAGCTGCTGGATCTTGAAGACAGAATTGGGTATGTAAGCACAGGGTTGCATGACGATG AAATCGCTCGCAGCCTTAGGATGGTCAAGTATTCAGCATTCAACCCCAAGCATTTTGCAA CAGAAGTAGAAAGGAATTGCAGTATTTGTCAGGAAGAATTTGAAGCAAATGAGGAAACAG GGAGGCTGATCTGTGGCCACAGCTATCATGTGCAATGCATAAAGCAGTGGCTTTCTAGGA AGAACACCTGCCCTGTCTGCAAAACTGTTGTATCGAAGACATGAAATCCAATCAGTCCCT AAGCACACTTGAACTGAAAATTGTGAAAAGGACTTACTCTTTCACAGTGTTTGTTTGTGA TTGTACAGCTCTGTTTGTACATGATGCTTTGTGTAAGCACAAGCCTGAAGCAAACCATCT CATTTGCATATAGAAATTTACATGTTTTCAGTTTTCCCAGTGTCAAAAAAAAAAAAAAGA



consensusID : consensus_13504#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 432
fasta sequence
                              [AGCATAGTNGGTTTNTGTGCGCGNGGTCGTCTTACTANGANGCNGCTCAGGANCCATATCGATGGTCCAGTNTTCCGCATNCAACCACCAGAGCATTTTGNGCACNAANTNNANNGGAATTGCAGTATTTGTCAGGAAGAATTTGAAGCNAATGAGGAAACAGGGAGGCTGATCTGTGGCCACAGCTATCATGTGCAATGCATAAAGCAGTGGCTTTCTANGAAGAACACCTGCCCTGTCTGCNAAACTGTTGTATCGAAGACATGAAATCCAATCAGTCCCTAAGCACACTTGAACTGAAAATTGTGAAAAGGACTTACTCTTTCNCAGTGTTTGTTTGTGATTGTACAGCTCTGTTTGTACATGATGCTTTGTGTAAGCACAANCCTGAANCAAACCATCTCATTTGCATATAGAAATTTACATGTTTTC]

[+] EMBL BE228912             [AGCATAGTNGGTTTNTGTGCGCGNGGTCGTCTTACTANGANGCNGCTCAGGANCCATATCGATGGTCCAGTNTTCCGCATNCAACCACCAGAGCATTTTGNGCACNAANTNNANNGGAATTGCAGTATTTGTCAGGAAGAATTTGAAGCNAATGAGGAAACAGGGAGGCTGATCTGTGGCCACAGCTATCATGTGCAATGCATAAAGCAGTGGCTTTCTANGAAGAACACCTGCCCTGTCTGCNAAACTGTTGTATCGAAGACATGAAATCCAATCAGTCCCTAAGCACACTTGAACTGAAAATTGTGAAAAGGACTTACTCTTTCNCAGTGTTTGTTTGTGATTGTACAGCTCTGTTTGTACATGATGCTTTGTGTAAGCACAANCCTGAANCAAACCATCTCATTTGCATATAGAAATTTACATGTTTTC]


>consensus_13504#2 AGCATAGTNGGTTTNTGTGCGCGNGGTCGTCTTACTANGANGCNGCTCAGGANCCATATC GATGGTCCAGTNTTCCGCATNCAACCACCAGAGCATTTTGNGCACNAANTNNANNGGAAT TGCAGTATTTGTCAGGAAGAATTTGAAGCNAATGAGGAAACAGGGAGGCTGATCTGTGGC CACAGCTATCATGTGCAATGCATAAAGCAGTGGCTTTCTANGAAGAACACCTGCCCTGTC TGCNAAACTGTTGTATCGAAGACATGAAATCCAATCAGTCCCTAAGCACACTTGAACTGA AAATTGTGAAAAGGACTTACTCTTTCNCAGTGTTTGTTTGTGATTGTACAGCTCTGTTTG TACATGATGCTTTGTGTAAGCACAANCCTGAANCAAACCATCTCATTTGCATATAGAAAT TTACATGTTTTC



consensusID : consensus_13504#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 373
fasta sequence
                              [AAGCACACGAGCGCGCGAGTGGTTGAGCTCAATGGCTCGCCGCGACGGCGTCGGCGGCGACGGCGGCGCGTCGGCGGCGGAGCAGCAGCGGAGAGTAGCGCTGCGTGTGCTGCTGTCCCGTGCGGAGGCTTCCTCGCCGCCGCCGGCGACGGTGGAGGAGGAGGCGCAGCGGGGGAGGAGCGGTGGTGGTAACAAGGGGCTCGCGTCGGCGGCGCTGCGCGGGCTCGGGTGCACGTCGACGGCGGCGCTGCGTGCCCACGCGCCGGCTTCGGCGGTGGAGGTGGCGAGTAGCTCGGAGCGGTGGCACGGGAGGCGGCGGCGGAGGAAGGTGCAGGAGAGGCGGAGCGCGAGGGGCGGCGGCGGAGGAGGAGGA]

[+] EMBL CB656033             [AAGCACACGAGCGCGCGAGTGGTTGAGCTCAATGGCTCGCCGCGACGGCGTCGGCGGCGACGGCGGCGCGTCGGCGGCGGAGCAGCAGCGGAGAGTAGCGCTGCGTGTGCTGCTGTCCCGTGCGGAGGCTTCCTCGCCGCCGCCGGCGACGGTGGAGGAGGAGGCGCAGCGGGGGAGGAGCGGTGGTGGTAACAAGGGGCTCGCGTCGGCGGCGCTGCGCGGGCTCGGGTGCACGTCGACGGCGGCGCTGCGTGCCCACGCGCCGGCTTCGGCGGTGGAGGTGGCGAGTAGCTCGGAGCGGTGGCACGGGAGGCGGCGGCGGAGGAAGGTGCAGGAGAGGCGGAGCGCGAGGGGCGGCGGCGGAGGAGGAGGA]
[+] EMBL CB658844             [AAGCACTTTAGCGCGCGAGTGGTTGAGCTCAATGGCTCGCCGCGACGGCGTCGGCGGCGACGGCGGCGCGTCGGCGGCGGAGCAGCAGCGGAGAGTAGCGCTGCGTGTGCTGCTGTCCCGTGCGGAGGCTTCCTCGCCGCCGCCGGCGACGGTGGAGGAGGAGGCGCAGCGGGGGAGGAGCGGTGGTGGTAACAAGGGGCTCGCGTCGGCGGCGCTGCGCGGGCTCGGGTGCACGTCGACGGCGGCGCTGCGTGCCCACGCGCCGGCTTCGGCGGTGGAGGTGGCGAGTAGCTCGGAGCGGTGGCACGGGAGGCCGCCGCAGAGGAAGGCGCATGAAAGGCTGACCCCTAGGGGCGG                ]
[+] EMBL CB668068             [               CGAGTGGTTGAGCTCAATGGCTCGCCGCGACGGCGTCGGCGGCGACGGCGGCGCGTCGGCGGCGGAGCAGCAGCGGAGAGTAGCGCTGCGTGTGCTGCTGTCCCGTGCGGAGGCTTCCTCGCCGCCGCCGGCGACGGTGGAGGAGGAGGCGCAGCGGGGGAGGAGCGGTGGTGGTAACAAGGGGCTCGCGTCGGCGGCGCTGCGCGGGCTCGGGTGCACGTCGACGGCGGCGCTGCGTGCCCACGCGCCGGCTTCGGCGGTGGAGGTGGCGAGTAGCTCGGAGCGGTGGCACGGGAGGCGGCGGCGGAGGAAGGTGCAGGAGAGGCGGAGCGCGAGGGGCGGCGGCGGAGGAGGAGG ]


>consensus_13504#3 AAGCACACGAGCGCGCGAGTGGTTGAGCTCAATGGCTCGCCGCGACGGCGTCGGCGGCGA CGGCGGCGCGTCGGCGGCGGAGCAGCAGCGGAGAGTAGCGCTGCGTGTGCTGCTGTCCCG TGCGGAGGCTTCCTCGCCGCCGCCGGCGACGGTGGAGGAGGAGGCGCAGCGGGGGAGGAG CGGTGGTGGTAACAAGGGGCTCGCGTCGGCGGCGCTGCGCGGGCTCGGGTGCACGTCGAC GGCGGCGCTGCGTGCCCACGCGCCGGCTTCGGCGGTGGAGGTGGCGAGTAGCTCGGAGCG GTGGCACGGGAGGCGGCGGCGGAGGAAGGTGCAGGAGAGGCGGAGCGCGAGGGGCGGCGG CGGAGGAGGAGGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13504#1      ------------------------------------------------------------
consensus_13504#2      ------------------------------------------------------------
consensus_13504#0      AGCGCGCTAGTGGTTGAGCTCAATGGCTCGCCGCGACGGCGTCGGCGGCGACGGCGGCGC 60
consensus_13504#3      ------------------------------------------------------------
                                                                                   

consensus_13504#1      ------------------------------------------------------------
consensus_13504#2      ------------------------------------------------------------
consensus_13504#0      GTCGGCGGCGGAGCAGCAGCGGAGAGTAGCGCTGCGTGTGCTGCTGTCCCGTGCGGAGGC 120
consensus_13504#3      ------------------------------------------------------------
                                                                                   

consensus_13504#1      ------------------------------------------------------------
consensus_13504#2      ------------------------------------------------------------
consensus_13504#0      TTCCTCGCCGCCGCCGGCGACGGTGGAGGAGGAGGCGCAGCGGGGGAGGAGCGGTGGTGG 180
consensus_13504#3      ------------------------------------------------------------
                                                                                   

consensus_13504#1      ------------------------------------------------------------
consensus_13504#2      ------------------------------------------------------------
consensus_13504#0      TAACAAGGGGCTCGCGTCGGCGGCGCTGCGCGGGCTCGGGTGCACGTCGACGGCGGCGCT 240
consensus_13504#3      ------------------------------------------------------------
                                                                                   

consensus_13504#1      ------------------------------------------------------------
consensus_13504#2      ------------------------------------------------------------
consensus_13504#0      GCGTGCCCACGCGCCGGCTTCGGCGGTGGAGGTGGCGAGTAGCTCGGAGCGGTGGCACGG 300
consensus_13504#3      ------------------------------------------------------------
                                                                                   

consensus_13504#1      ------------------------------------------------------------
consensus_13504#2      ------------------------------------------------------------
consensus_13504#0      GAGGCGGCGGCGGAGGAAGGTGCAGGAGAGCCGGCCGCTCCTCGAGCTCGAAGGGTGACC 360
consensus_13504#3      ------------------------------------------------------------
                                                                                   

consensus_13504#1      --GCGTGAGCACATATCCTCGTCGCTCATGGACTCGCCGCCGTTCCCCGACATGCCGCTC 58
consensus_13504#2      ------------------------------------------------------------
consensus_13504#0      ATGCGTGAGCACATATCCTCGTCGCTCATGGACTCGCCGCCGTTCCCCGACATGCCGCTC 420
consensus_13504#3      ------------------------------------------------------------
                                                                                   

consensus_13504#1      CTCAACGCCGACCTGTTACCACCACCACCCTCCGGCCGCCACCGCCATGAGATACCGCCA 118
consensus_13504#2      ------------------------------------------------------------
consensus_13504#0      CTCAACGCCGACCTGCTACCACCACCACCCTCCGGCCGCCACCGCCATG-GATACCGCCA 479
consensus_13504#3      ------------------------------------------------------------
                                                                                   

consensus_13504#1      CCCCCACGTCGGCGCCGCCGAGGAAGAGATCATGATGTTAAGAACACGGCTATTATGGGG 178
consensus_13504#2      ------------------------------------------------------------
consensus_13504#0      CCCCCACGTCGGCGCCGCCGAGGAAGAGATCATGATGTTAAGAACACGGCTATTATGGGG 539
consensus_13504#3      ------------------------------------------------------------
                                                                                   

consensus_13504#1      AAGATTCGGTATGCATGATCAGCACCAGGATTGGCGACTCGACGTTGACAACATGACATA 238
consensus_13504#2      ------------------------------------------------------------
consensus_13504#0      AAGATTCGGTATGCATGATCAGCACCAGGATTGGCGACTCGACGTTGACAACATGACATA 599
consensus_13504#3      ------------------------------------------------------------
                                                                                   

consensus_13504#1      TGAGGAGCTGCTGGATCTTGAAGACAGAATTGGGTATGTAAGCACAGGGTTGCATGACGA 298
consensus_13504#2      ----------------------AGCATAGTNGG-TTTNTGTGCGCGNGGTCGTCTTACTA 37
consensus_13504#0      TGAGGAGCTGCTGGATCTTGAAGACAGAATTGGGTATGTAAGCACAGGGTTGCATGACGA 659
consensus_13504#3      -------------------------------AAGCACACGAGCGCGCGAGTGGTTGA--G 27
                                                                ** *  *   *  * *   

consensus_13504#1      TGAAATCGCTC-GCAGCCTTAG-GATGGTCAAGTATTCAGCATTCAACCCC--AAGCATT 354
consensus_13504#2      NGANGCNGCTCAGGANCCATATCGATGGTCCAGTNTTCCGCATNCAACCACCAGAGCATT 97
consensus_13504#0      TGAAATCGCTC-GCAGCCTTAG-GATGGTCAAGTATTCAGCATTCAACCCC--AAGCATT 715
consensus_13504#3      CTCAATGGCTC-GCCGCGACGGCGTCGGCGGCGACGGCGGCGCGTCGGCGGCGGAGCAGC 86
                              **** *   *      *  **    *    * **       *     ****  

consensus_13504#1      TTGCAACAGAAGTAGAAAG-GAATTGCAGTATTTGTCAGGAAGAATTTGAAGCAAATGAG 413
consensus_13504#2      TTGNGCACNAANTNNANNG-GAATTGCAGTATTTGTCAGGAAGAATTTGAAGCNAATGAG 156
consensus_13504#0      TTGCAACAGAAGTAGAAAG-GAATTGCAGTATTTGTCAGGAAGAATTTGAAGCAAATGAG 774
consensus_13504#3      AGCGGAGAGTAGCGCTGCGTGTGCTGCTGT-CCCGTGCGGAGGCTTCCTCGCCGCCGCCG 145
                                 *       * *   *** **    **  *** *  *      *      *

consensus_13504#1      GAAACAG-GGAGGCTGATCTGTGGCCACAGCTATCATGTGCAATGCATAAAGCAGTGGCT 472
consensus_13504#2      GAAACAG-GGAGGCTGATCTGTGGCCACAGCTATCATGTGCAATGCATAAAGCAGTGGCT 215
consensus_13504#0      GAAACAG-GGAGGCTGATCTGTGGCCACAGCTATCATGTGCAATGCATAAAGCAGTGGCT 833
consensus_13504#3      GCGACGGTGGAGGAGGAGGCGCAGCGGGGG-----AGGAGCGGTGGTGGTAACAAGGGGC 200
                       *  ** * *****  **   *  **    *     * * **  **     * **  **  

consensus_13504#1      TTCTAGGAAGAACACCTGCCCTGTCTGCAAAACTGTTGTATCGAAGACATGAAATCCAAT 532
consensus_13504#2      TTCTANGAAGAACACCTGCCCTGTCTGCNAAACTGTTGTATCGAAGACATGAAATCCAAT 275
consensus_13504#0      TTCTAGGAAGAACACCTGCCCTGTCTGCAAAACTGTTGTATCGAAGACATGAAATCCAAT 893
consensus_13504#3      TCGCGTCGGCGGCGC-TGCGCGGGCTCGGGTGC----ACGTCGACGGCG----GCGCTGC 251
                       *           * * *** * * **      *       **** * *        *   

consensus_13504#1      CAGTCCCTAAGCACACTTGAAC--TGAAAATTGTGAAAAGGACTTA-CTCTTTCACAGTG 589
consensus_13504#2      CAGTCCCTAAGCACACTTGAAC--TGAAAATTGTGAAAAGGACTTA-CTCTTTCNCAGTG 332
consensus_13504#0      CAGTCCCTAAGCACACTTGAAC--TGAAAATTGTGAAAAGGACTTA-CTCTTTCACAGTG 950
consensus_13504#3      GTGCCCACGCGCCGGCTTCGGCGGTGGAGGTGGCGAGTAGCTCGGAGCGGTGGCACGGGA 311
                         * **    **   ***   *  ** *  * * **  **  *  * *  *  * * *  

consensus_13504#1      TTTGTTTGTGATTGTACAGCTCTGTTTGTACATGATGCTTTGTGTAAGCACAAGCCTGAA 649
consensus_13504#2      TTTGTTTGTGATTGTACAGCTCTGTTTGTACATGATGCTTTGTGTAAGCACAANCCTGAA 392
consensus_13504#0      TTTGTTTGTGATTGTACAGCTCTGTTTGTACATGATGCTTTGTGTAAGCACAAGCCTGAA 1010
consensus_13504#3      GGCGGCGGCGGAGGAA-GGTGCAGGAGAGGCGGAGCGCGAGGGGCGGCGGCGGAGGAGGA 370
                          *   * *   * *  *  * *      *     **   * *      *      * *

consensus_13504#1      GCAAACCATCTCATTTGCATATAGAAATTTACATGTTTTCAGTTTTCCCAGTGTCAAAAA 709
consensus_13504#2      NCAAACCATCTCATTTGCATATAGAAATTTACATGTTTTC-------------------- 432
consensus_13504#0      GCAAACCATCTCATTTGCATATAGAAATTTACATGTTTTCAGTTTTCCCAGTGTCTACTG 1070
consensus_13504#3      GGA--------------------------------------------------------- 373
                         *                                                         

consensus_13504#1      AAAAAAAAAGA------------------------------------------------- 720
consensus_13504#2      ------------------------------------------------------------
consensus_13504#0      AGTGTTAAGCATTTGCTTGTAGAAACTTACATGTTTTCAGTTTTCCCAGTGTGTACTGAA 1130
consensus_13504#3      ------------------------------------------------------------
                                                                                   

consensus_13504#1      --------------------------------------------------------
consensus_13504#2      --------------------------------------------------------
consensus_13504#0      TATTAATTCAGGTGAAAGAAAAAAAATAAGAAGAGAGATTTTTTTTAAAAAAAGAG 1186
consensus_13504#3      --------------------------------------------------------
                                                                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)