These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1351#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1081 fasta sequence [ATCGCAGCTCACTCCTCTGCTTCCTTCCTCGCTGTTTGCTTCTGGTTTGATTGATCGACGATGGAGCACAAGGACAGGCAGCGGCATGCAGCGGCGGCGGTGGCTAAGCCGCGGCAGCGGTCGGCGTCGTTCCACGGGCGCGGCGAGGCGGAGCAGCGACACTCGCTGCTGAAGCAGCGGCCGCGGACGCAGCCCGACCTGCTTGCCGGCCTCAGGGGGCAGAGCTTCCGGCGAGGCGGCGGCGAGGGGCGGGCGCCGGCGGGGCCGAGCAGGGTGCTGCTGACCGTGGCGGTGCGGCAGAGCATGTGGCCGCTGCACGTGATGGCGCGCGCGGAGTGGAGCGTGGCCGACCTGGTCGCCGCCGCCGTGGAGCTCTACATCCGGGAGGGGCGCCGGCCGCTGCTGCCGTCCGCCGACCCCGCCGCCTTCGGACTCCACTTCTCCCAGTTCAGCTTGCAGAGTTTGAACCCGGAGGAGAAGCTCATGGAGCTCGGCAGCAGGAGCTTCTTCCTCTGCCCCAAGGCCGCCGCCGCCGCCGTGGCTGCCGTCTCGTCGGGCGAAGACACCGGCGGCTTGTCCGGGGAAGACGAGGCCAACTCTGCCAAGAAGCCCAGCGTGTTGGCTCCATGGCTAGGGTTCCTTCACTTCTGGCCGCTGCTGTAGGTTATAGTACTAGTTAATACTGCCATTTGTGTAGGTCACAGTAAGCTGCATGTATCACCTGTTTTTTTTGGATAATGGTATGCAGCATCTGTGAACTATGGTAATCTTAGTTTCTTTTTTCTACTAAATGTATATATACATTAGTGTTTACTAAGTGAAATTATACTGTTACAGTTTTGGAGATCCGATTTGTTGTGGCTCATAATTGGCATACAAAGTCGAATTGTTCATTTGGATGTAGCTGCAAATTGTACAATGCGAACTTAGATTCTGTATGAGATTGAACATATACTGCCCGCATGCAAAAGTCAGACGCTTCAATCTCCTTCTCTGGGGAATCCAATTCTATTTTTCTACAAAACTGTCAATTCTCAGAAGAGTACTTTTATTGGTCCAGAATAGTTATTGGTCCTAATAA] [+] EMBL AK058851 [ATCGCAGCTCACTCCTCTGCTTCCTTCCTCGCTGTTTGCTTCTGGTTTGATTGATCGACGATGGAGCACAAGGACAGGCAGCGGCATGCAGCGGCGGCGGTGGCTAAGCCGCGGCAGCGGTCGGCGTCGTTCCACGGGCGCGGCGAGGCGGAGCAGCGACACTCGCTGCTGAAGCAGCGGCCGCGGACGCAGCCCGACCTGCTTGCCGGCCTCAGGGGGCAGAGCTTCCGGCGAGGCGGCGGCGAGGGGCGGGCGCCGGCGGGGCCGAGCAGGGTGCTGCTGACCGTGGCGGTGCGGCAGAGCATGTGGCCGCTGCACGTGATGGCGCGCGCGGAGTGGAGCGTGGCCGACCTGGTCGCCGCCGCCGTGGAGCTCTACATCCGGGAGGGGCGCCGGCCGCTGCTGCCGTCCGCCGACCCCGCCGCCTTCGGACTCCACTTCTCCCAGTTCAGCTTGCAGAGTTTGAACCCGGAGGAGAAGCTCATGGAGCTCGGCAGCAGGAGCTTCTTCCTCTGCCCCAAGGCCGCCGCCGCCGCCGTGGCTGCCGTCTCGTCGGGCGAAGACACCGGCGGCTTGTCCGGGGAAGACGAGGCCAACTCTGCCAAGAAGCCCAGCGTGTTGGCTCCATGGCTAGGGTTCCTTCACTTCTGGCCGCTGCTGTAGGTTATAGTACTAGTTAATACTGCCATTTGTGTAGGTCACAGTAAGCTGCATGTATCACCTGTTTTTTTTGGATAATGGTATGCAGCATCTGTGAACTATGGTAATCTTAGTTTCTTTTTTCTACTAAATGTATATATACATTAGTGTTTACTAAGTGAAATTATACTGTTACAGTTTTGGAGATCCGATTTGTTGTGGCTCATAATTGGCATACAAAGTCGAATTGTTCATTTGGATGTAGCTGCAAATTGTACAATGCGAACTTAGATTCTGTATGAGATTGAACATATACTGCCCGCATGCAAAAGTCAGACGCTTCAATCTCCTTCTCTGGGGAATCCAATTCTATTTTTCTACAAAACTGTCAATTCTCAGAAGAGTACTTTTATTGGTCCAGAATAGTTATTGGTCCTAATAA] consensusID : consensus_1351#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 610 fasta sequence [CTTCCTCGCTGTTTGCTTCTGGTTTGATTGATCGACGATGGAGCACAAGGACAGGCAGCGGCATGCAGCGGCGGCGGTGGCTAAGCCGCGGCAGCGGTCGGCGTCGTTCCACGGGCGCGGCGAGGCGGAGCAGCGACACTCGCTGCTGAAGCAGCGGCCGCGGACGCAGCCCGACCTGCTTGCCGGCCTCAGGGGGCAGAGCTTCCGGCGAGGCGGCGGCGAGGGGCGGGCGCCGGCGGGGCCGAGCAGGGTGCTGCTGACCGTGGCGGTGCGGCAGAGCATGTGGCCGCTGCACGTGATGGCGCGCGCGGAGTGGAGCGTGGCCCACCTGGTCGCCCCCGCCGTGGAGGTCTACCTCCCGGGAAGGGNGCCCGGCCGCTGCTGTCGTTCCGCCGAACCCCCCCGCCTCCGGATCCACTTCTCCCCAGATCAACTTGCAGAAAACGTGACGCGGGGACGCCTCCCTTCCACTGGCTATAATTTTAACACCTTCCTTGCCGGGGCCCGCGGACGGCAAGAGCTCCTCCCCTGATCCGGAAAGGCTGTCGGGTTTTTTTGTACGAGAGGTTGTACCCGGAGGAGAACTCCTGGAGCTCGCCGCCAGGGCTTC] [+] EMBL CA754079 [CTTCCTCGCTGTTTGCTTCTGGTTTGATTGATCGACGATGGAGCACAAGGACAGGCAGCGGCATGCAGCGGCGGCGGTGGCTAAGCCGCGGCAGCGGTCGGCGTCGTTCCACGGGCGCGGCGAGGCGGAGCAGCGACACTCGCTGCTGAAGCAGCGGCCGCGGACGCAGCCCGACCTGCTTGCCGGCCTCAGGGGGCAGAGCTTCCGGCGAGGCGGCGGCGAGGGGCGGGCGCCGGCGGGGCCGAGCAGGGTGCTGCTGACCGTGGCGGTGCGGCAGAGCATGTGGCCGCTGCACGTGATGGCGCGCGCGGAGTGGAGCGTGGCCCACCTGGTCGCCCCCGCCGTGGAGGTCTACCTCCCGGGAAGGGNGCCCGGCCGCTGCTGTCGTTCCGCCGAACCCCCCCGCCTCCGGATCCACTTCTCCCCAGATCAACTTGCAGAAAACGTGACGCGGGGACGCCTCCCTTCCACTGGCTATAATTTTAACACCTTCCTTGCCGGGGCCCGCGGACGGCAAGAGCTCCTCCCCTGATCCGGAAAGGCTGTCGGGTTTTTTTGTACGAGAGGTTGTACCCGGAGGAGAACTCCTGGAGCTCGCCGCCAGGGCTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1351#0 ATCGCAGCTCACTCCTCTGCTTCCTTCCTCGCTGTTTGCTTCTGGTTTGATTGATCGACG 60 consensus_1351#1 -----------------------CTTCCTCGCTGTTTGCTTCTGGTTTGATTGATCGACG 37 ************************************* consensus_1351#0 ATGGAGCACAAGGACAGGCAGCGGCATGCAGCGGCGGCGGTGGCTAAGCCGCGGCAGCGG 120 consensus_1351#1 ATGGAGCACAAGGACAGGCAGCGGCATGCAGCGGCGGCGGTGGCTAAGCCGCGGCAGCGG 97 ************************************************************ consensus_1351#0 TCGGCGTCGTTCCACGGGCGCGGCGAGGCGGAGCAGCGACACTCGCTGCTGAAGCAGCGG 180 consensus_1351#1 TCGGCGTCGTTCCACGGGCGCGGCGAGGCGGAGCAGCGACACTCGCTGCTGAAGCAGCGG 157 ************************************************************ consensus_1351#0 CCGCGGACGCAGCCCGACCTGCTTGCCGGCCTCAGGGGGCAGAGCTTCCGGCGAGGCGGC 240 consensus_1351#1 CCGCGGACGCAGCCCGACCTGCTTGCCGGCCTCAGGGGGCAGAGCTTCCGGCGAGGCGGC 217 ************************************************************ consensus_1351#0 GGCGAGGGGCGGGCGCCGGCGGGGCCGAGCAGGGTGCTGCTGACCGTGGCGGTGCGGCAG 300 consensus_1351#1 GGCGAGGGGCGGGCGCCGGCGGGGCCGAGCAGGGTGCTGCTGACCGTGGCGGTGCGGCAG 277 ************************************************************ consensus_1351#0 AGCATGTGGCCGCTGCACGTGATGGCGCGCGCGGAGTGGAGCGTGGCCGACCTGGTCGCC 360 consensus_1351#1 AGCATGTGGCCGCTGCACGTGATGGCGCGCGCGGAGTGGAGCGTGGCCCACCTGGTCGCC 337 ************************************************ *********** consensus_1351#0 GCCGCCGTGGAGCTCTACATCC-GGGAGGGGCGCC-GGCCGCTGCTGCCGT-CCGCCGA- 416 consensus_1351#1 CCCGCCGTGGAGGTCTACCTCCCGGGAAGGGNGCCCGGCCGCTGCTGTCGTTCCGCCGAA 397 *********** ***** *** **** *** *** *********** *** ******* consensus_1351#0 CCCCGCCGCCTTCGGACTCCACTTCTCCC-AGTTCAGCTTGCAGAGTTTGAACCCGGAGG 475 consensus_1351#1 CCCCCCCGCCTCCGGA-TCCACTTCTCCCCAGATCAACTTGCAGAAAACGTGACGCGGGG 456 **** ****** **** ************ ** *** ******** * * * ** consensus_1351#0 AGAAGCTCATGGAGCTCGGCAGCAGGAGCTTCTTCCTCTGCCCCAAGGCCGCCGCCGCCG 535 consensus_1351#1 ACGCCTCCCTTCCACT-GGCTATAATTTTAACACCTTCCTTGCCGGGGCC--CGCGGACG 513 * * * ** *** * * * ** ** **** *** * ** consensus_1351#0 CCGTGGCTGCCGTCTCGTCGGGCGAAGACACCGGCGGCTTGTCCGGGGAAGACGAGGCCA 595 consensus_1351#1 GCAAGAGCTCC-TCCCCTGATCCGGAAAGGCTGTCGGGTTTTTTTGT-ACGAGAGGTTGT 571 * * ** ** * * ** * * * * *** ** * * * ** * consensus_1351#0 ACTCTGCCAAGAAGCCCAGCGTGTTGGCTCCATGGCTAGGGTTCCTTCACTTCTGGCCGC 655 consensus_1351#1 ACCCGGAGGAGAACTCCTGGAGCTCGCCGCCAGGGCTTC--------------------- 610 ** * * **** ** * * * * *** **** consensus_1351#0 TGCTGTAGGTTATAGTACTAGTTAATACTGCCATTTGTGTAGGTCACAGTAAGCTGCATG 715 consensus_1351#1 ------------------------------------------------------------ consensus_1351#0 TATCACCTGTTTTTTTTGGATAATGGTATGCAGCATCTGTGAACTATGGTAATCTTAGTT 775 consensus_1351#1 ------------------------------------------------------------ consensus_1351#0 TCTTTTTTCTACTAAATGTATATATACATTAGTGTTTACTAAGTGAAATTATACTGTTAC 835 consensus_1351#1 ------------------------------------------------------------ consensus_1351#0 AGTTTTGGAGATCCGATTTGTTGTGGCTCATAATTGGCATACAAAGTCGAATTGTTCATT 895 consensus_1351#1 ------------------------------------------------------------ consensus_1351#0 TGGATGTAGCTGCAAATTGTACAATGCGAACTTAGATTCTGTATGAGATTGAACATATAC 955 consensus_1351#1 ------------------------------------------------------------ consensus_1351#0 TGCCCGCATGCAAAAGTCAGACGCTTCAATCTCCTTCTCTGGGGAATCCAATTCTATTTT 1015 consensus_1351#1 ------------------------------------------------------------ consensus_1351#0 TCTACAAAACTGTCAATTCTCAGAAGAGTACTTTTATTGGTCCAGAATAGTTATTGGTCC 1075 consensus_1351#1 ------------------------------------------------------------ consensus_1351#0 TAATAA 1081 consensus_1351#1 ------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||