These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13513#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1153 fasta sequence [TTATGCACATTCGAATTGCTAGCTAGCTCGTCGAAGAAACCAAAGTGCGAGCGATCGGCTAGCTGCTGCAAGAAGCCTTGACCATGGAGGCCAGACACCGTGTGATGTCGCTGCTGCTGGTGCTGGTGATCGGCTGCTGCGCCTGGGGCTGCCGCCCTGGCGCGGCGCAGGTGCCCGTCCCGGCGAGGACGGACGGGTTCGTGTACGGTGGGAAGGCGCCGGCGCTGGGGGAGACGGTGGTGGTGGAGGCGTACTTCGACCCCGTCTGCCCGGACAGCCGCGACGCG-TGGCC-GGAGCTGAAGAAGGCGGTCGAGCACTACGCCTCGCGGGTGACCGTCGTCGTGCACCTCTTCCCACTACCTTATCACAGCAATGCCTTCATTTCCTGCCGGTCAATTCATGCCGTGAACAAGATAAATCCGTCGTTTGTGTATCCCCTGCTCGAGAGATTCTTCAAGTACCAGGAGGGTTATTACAACCAGCCAACGTATGGGAAAACAAGAGCTACAGTGGATGCAGAGGTAGCTAAAAACCTTGTTGCCCCCGTCATTGGGGAAGCCAATTTGGCAGCATACAAAGCAGGTTTCAATGATTCAAAATCA-GATCAAGCCACACGAATTTCTTTCAAGTATGGTTGCGCACGAGGTGTTACGGGAACACCGTACTTCTTTGTGAATGGCATCCCCCTTATTAGTGACTCTGGTTCCCCACTGGAATACAACAAGTGGAAATCAATCCTTGATCCATTGGTTGGCAAGATGTAGAGAGTGTTTCAACTAAAGTCCTCTGCCTGGTGTTAAATACAAGACTCAAG-ACAAATAAGCTTGGCGCAA-AAACAGTATGATTTCGCCAAGATATAGATGGAACGATATTGATCACAAAGATCAAGTTTAGTTAGGCAAATAAAAGGGCAACCCTACTCTAATGACATATATTGTCTTTACCTTGTATTATGAGACAGAAAAGAATTTCTATAATACAAAAGAGATGTAGCTCTCACATACAATGGTATCCCAGTGTGCTACCAACAAGACTTGTATGAAATATAGTATGCATTTTAAGATTTCGGATGTTATGCCAAACTACATTGATAAGGAAGCAGTGTTACATTCCTTGGTTTTCATTAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK060052 [TTATGCACATTCGAATTGCTAGCTAGCTCGTCGAAGAAACCAAAGTGCGAGCGATCGGCTAGCTGCTGCAAGAAGCCTTGACCATGGAGGCCAGACACCGTGTGATGTCGCTGCTGCTGGTGCTGGTGATCGGCTGCTGCGCCTGGGGCTGCCGCCCTGGCGCGGCGCAGGTGCCCGTCCCGGCGAGGACGGACGGGTTCGTGTACGGTGGGAAGGCGCCGGCGCTGGGGGAGACGGTGGTGGTGGAGGCGTACTTCGACCCCGTCTGCCCGGACAGCCGCGACGCG TGGCC GGAGCTGAAGAAGGCGGTCGAGCACTACGCCTCGCGGGTGACCGTCGTCGTGCACCTCTTCCCACTACCTTATCACAGCAATGCCTTCATTTCCTGCCGGTCAATTCATGCCGTGAACAAGATAAATCCGTCGTTTGTGTATCCCCTGCTCGAGAGATTCTTCAAGTACCAGGAGGGTTATTACAACCAGCCAACGTATGGGAAAACAAGAGCTACAGTGGATGCAGAGGTAGCTAAAAACCTTGTTGCCCCCGTCATTGGGGAAGCCAATTTGGCAGCATACAAAGCAGGTTTCAATGATTCAAAATCA GATCAAGCCACACGAATTTCTTTCAAGTATGGTTGCGCACGAGGTGTTACGGGAACACCGTACTTCTTTGTGAATGGCATCCCCCTTATTAGTGACTCTGGTTCCCCACTGGAATACAACAAGTGGAAATCAATCCTTGATCCATTGGTTGGCAAGATGTAGAGAGTGTTTCAACTAAAGTCCTCTGCCTGGTGTTAAATACAAGACTCAAG ACAAATAAGCTTGGCGCAA AAACAGTATGATTTCGCCAAGATATAGATGGAACGATATTGATCACAAAGATCAAGTTTAGTTAGGCAAATAAAAGGGCAACCCTACTCTAATGACATATATTGTCTTTACCTTGTATTATGAGACAGAAAAGAATTTCTATAATACAAAAGAGATGTAGCTCTCACATACAATGGTATCCCAGTGTGCTACCAACAAGACTTGTATGAAATATAGTATGCATTTTAAGATTTCGG ] [+] EMBL AK104227 [TTATGCACATTCGAATTGCTAGCTAGCTCGTCGAAGAAACCAAAGTGCGAGCGATCGGCTAGCTGCTGCAAGAAGCCTTGACCATGGAGGCCAGACACCGTGTGATGTCGCTGCTGCTGGTGCTGGTGATCGGCTGCTGCGCCTGGGGCTGCCGCCCTGGCGCGGCGCAGGTGCCCGTCCCGGCGAGGACGGACGGGTTCGTGTACGGTGGGAAGGCGCCGGCGCTGGGGGAGACGGTGGTGGTGGAGGCGTACTTCGACCCCGTCTGCCCGGACAGCCGCGACGCG TGGCC GGAGCTGAAGAAGGCGGTCGAGCACTACGCCTCGCGGGTGACCGTCGTCGTGCACCTCTTCCCACTACCTTATCACAGCAATGCCTTCATTTCCTGCCGGTCAATTCATGCCGTGAACAAGATAAATCCGTCGTTTGTGTATCCCCTGCTCGAGAGATTCTTCAAGTACCAGGAGGGTTATTACAACCAGCCAACGTATGGGAAAACAAGAGCTACAGTGGATGCAGAGGTAGCTAAAAACCTTGTTGCCCCCGTCATTGGGGAAGCCAATTTGGCAGCATACAAAGCAGGTTTCAATGATTCAAAATCA GATCAAGCCACACGAATTTCTTTCAAGTATGGTTGCGCACGAGGTGTTACGGGAACACCGTACTTCTTTGTGAATGGCATCCCCCTTATTAGTGACTCTGGTTCCCCACTGGAATACAACAAGTGGAAATCAATCCTTGATCCATTGGTTGGCAAGATGTAGAGAGTGTTTCAACTAAAGTCCTCTGCCTGGTGTTAAATACAAGACTCAAG ACAAATAAGCTTGGCGCAA AAACAGTATGATTTCGCCAAGATATAGATGGAACGATATTGATCACAAAGATCAAGTTTAGTTAGGCAAATAAAAGGGCAACCCTACTCTAATGACATATATTGTCTTTACCTTGTATTATGAGACAGAAAAGAATTTCTATAATACAAAAGAGATGTAGCTCTCACATACAATGGTATCCCAGTGTGCTACCAACAAGACTTGTATGAAATATAGTATGCATTTTAAGATTTCGG ] [+] EMBL AK059943 [ ATGCACATTCGAATTGCTAGCTAGCTCGTCGAAGAAACCAAAGTGCGAGCGATCGGCTAGCTGCTGCAAGAAGCCTTGACCATGGAGGCCAGACACCGTGTGATGTCGCTGCTGCTGGTGCTGGTGATCGGCTGCTGCGCCTGGGGCTGCCGCCCTGGCGCGGCGCAGGTGCCCGTCCCGGCGAGGACGGACGGGTTCGTGTACGGTGGGAAGGCGCCGGCGCTGGAGGAGACGGTGGTGGTGGAGGCGTACTTCGACCCCGTCTGCCCGGACAGCCGCGACGCG TGGCC GGAGCTGAAGAAGGCGGTCGAGCACTACGCCTCGCGGGTGACCGTCGTCGTGCACCTCTTCCCACTACCTTATCACAGCAATGCCTTCATTTCCTGCCGGTCAATTCATGCCGTGAACAAGATAAATCCGTCGTTTGTGTATCCCCTGCTCGAGAGATTCTTCAAGTACCAGGAGGGTTATTACAACCAGCCAACGTATGGGAAAACAAGAGCTACAGTGGATGCAGAGGTAGCTAAAAACCTTGTTGCCCCCGTCATTGGGGAAGCCAATTTGGCAGCATACAAAGCAGGTTTCAATGATTCAAAATCA GATCAAGCCACACGAATTTCTTTCAAGTATGGTTGCGCACGAGGTGTTACGGGAACACCGTACTTCTTTGTGAATGGCATCCCCCTTATTAGTGACTCTGGTTCCCCACTGGAATACAACAAGTGGAAATCAATCCTTGATCCATTGGTTGGCAAGATGTAGAGAGTGTTTCAACTAAAGTCCTCTGCCTGGTGTTAAATACAAGACTCAAG ACAAATAAGCTTGGCGCAA AAACAGTATGATTTCGCCAAGATATAGATGGAACGATATTGATCACAAAGATCAAGTTTAGTTAGGCAAATAAAAGGGCAACCCTACTCTAATGACATATATTGTCTTTACCTTGTATTATGAGACAGAAAAGAATTTCTATAATACAAAAGAGATGTAGCTCTCACATACAATGGTATCCCAGTGTGCTACCAACAAGACTTGTATGAAATATAGTATGCATTTTAAGATTTCGGATGTTATGCCAAACTACATTGATAAGGAAGCAGTGTTACATTC ] [+] EMBL AU032398 [ TCGAATTGCTAGCTAGCTCGTCGAAGAAACCAAAGTGCGAGCGATCGGCTAGCTGCTGCAAGAAGCCTTGACCATGGAGGCCAGACACCGTGTGATGTCGCTGCTGCTGGTGCTGGTGATCGGCTGCTGCGCCTGGGGCTGCCGCCCTGGCGCGGCGCAGGTGCCCGTCCCGGCGAGGACGGACGGGTTCGTGTACGGTGGGAAGGCGCCGGCGCTGGGGGAGACGGTGGTGGTGGAGGCGTACTTCGANCCCGTCTGCCCGGACANCCGCNACGCG TGGCC GGAGCTGAAGAAGGCGGTCGAGCACTACGCCTCGCGGGTaa ] [+] EMBL OSS14650A [ tagATTGCNAGCTAGCTCGTCGAAGAAACCAAAGTGCGAGCNATCGGCTAGCTGCTGCAAGAAGCCTTGACCATGGAGGCCAGACACCGTGTGATGTCGCTGCTGCTGGTGCTGGTGATCGGNTGNNGNGCCTGGGGCTGCCGCCCTGGNGCGGCGCAGGTNGCCGTNCCGGCGAGGACGGACGGNTTCGTNTACGGTGGGAAGACGCCGGCGCTGGGGGAGACGGTGGTGGTGGAGGCGTACTTCGACCCCGTCTGCCCGGACAGCCGCGACGNGTTGGCC GGAGCTGAAGAAGGCGGTCGAGCACTACGGCTCGNGGGTGACCGTCGTCGTGCACCTCTTCCCACTANCT ] [+] EMBL CB627688 [ AGTGCGAGCGATCGGCTAGCTGCTGCAAGAAGCCTTGACCATGGAGGCCAGACACCGTGTGATGTCGCTGCTGCTGGTGCTGGTGATCGGCTGCTGCGCCTGGGGCTGCCGCCCTGGCGCGGCGCAGGTGCCCGTCCCGGCGAGGACGGACGGGTTCGTGTACGGTGGGAAGGCGCCGGCGCTGGGGGAGACGGTGGTGGTGGAGGCGTACTTCGACCCCGTCTGCCCGGACAGCCGCGACGCG TGGCC GGAGCTGAAGAAGGCGGTCGAGCACTACGCCTCGCGGGTGACCGTCGTCGTGCACCTCTTCCCACTACCTTATCACAGCAATGCCTTCATTTCCTGCCGGTCAATTCATGCCGTGAACAAGATAAATCCGTCGTTTGTGTATCCCCTGCTCGAGAGATTCTTCAAGTACCAGGAGGGTTATTACAACCAGCCAACGTATGGGAAAACAAGAGCTACAGTGGATGCAGAGGTAGCTAAAAACCTTGTTGCCCCCGTCATTGGGGAAGCCAATTTGGCAGCATACAAAGCAGGTTTCAATGATTCAAAATCA GATCAAGCCACACGAATTTCTTTCAAGTATGGTTGCGCACGAGGTGTTACGGGAACACCGTACTTCTTTGTGAATGGCATCCCCCTTATTAGTGACTCTGGTTCCCCACTGGAATACAACAAGTGGAAATCAATCCTTGATCCATTGGTTGGCAAGATGTAGAGAGTGTTTCAACTAAAGTCCTCTGCCTGGTGTTAAATACAAGACTCAAG ACAA ] [+] EMBL CF311228 [ GGTGGTGGTGGAGGCGTACTTCGACCCCGTCTGCCCGGACAGCCGCGACGCG TGGCC GGAGCTGAAGAAGGCGGTCGAGCACTACGCCTCGCGGGTGACCGTCGTCGTGCACCTCTTCCCACTACCTTATCACAGCAATGCCTTCATTTCCTGCCGGTCAATTCATGCCGTGAACAAGATAAATCCGTCGTTTGTGTATCCCCTGCTCGAGAGATTCTTCAAGTACCAGGAGGGTTATTACAACCAGCCAACGTATGGGAAAACAAGAGCTACAGTGGATGCAGAGGTAGCTAAAAACCTTGTTGCCCCCGTCATTGGGGAAGCCAATTTGGCAGCATACAAAGCAGGTTTCAATGATTCAAAATCA GATCAAGCCACACGAATTTCTTTCAAGTATGGTTGCGCACGAGGTGTTACGGGAACACCGTACTTCTTTGTGAATGGCATCCCCCTTATTAGTGACTCTGGTTCCCCACTGGAATACAACAAGTGGAAATCAATCCTTGATCCATTGGTTGGCAAGATGTAGAGAGTGTTTCAACTAAAGTCCTCTGCCTGGTGTTAAATACAAGACTCAAG ACAAATA ] [-] EMBL CB627689 [ TGCCCGGACAGCCGCGACGCG TGGCCNGGAGCTGAAGAAGGCGGTCGAGCACTACGCCTCGCGGGTGACCGTCGTCGTGCACCTCTTCCCACTACCTTATCACAGCAATGCCTTCATTTCCTGCCGGTCAATTCATGCCGTGAACAAGATAAATCCGTCGTTTGTGTATCCCCTGCTCGAGAGATTCTTCAAGTACCAGGAGGGTTATTACAACCAGCCAACGTATGGGAAAACAAGAGCTACAGTGGATGCAGAGGTAGCTAAAAACCTTGTTGCCCCCGTCATTGGGGAAGCCAATTTGGCAGCATACAAAGCAGGTTTCAATGATTCAAAATCA GATCAAGCCACACGAATTTCTTTCAAGTATGGTTGCGCACGAGGTGTTACGGGAACACCGTACTTCTTTGTGAATGGCATCCCCCTTATTAGTGACTCTGGTTCCCCACTGGAATACAACAAGTGGAAATCAATCCTTGATCCATTGGTTGGCAAGATGTAGAGAGTGTTTCAACTAAAGTCCTCTGCCTGGTGTTAAATACAAGACTCAAG ACAAATAAGCTTGACGCAA AAACAGTATGATTTCGCCAAGATATAGATGGAACGATATTGATCACAAAGATCAAGTTTAGTTAGGCAAATAAAAGGGCAACCCTACTCTAATGACATATATTGTCTTTACCTTGTATTATGAGACAGAAAAGAATTTCTATAATACAAAAGAGATGTAGCTCTCACATACAATGGTATCCCAGTGTGCTACCAACAAGAGTTGTATGAAATATAGTATGCATT ] [-] EMBL CB682717 [ ACTACGCCTCGCGGGTGACCGTCGTCGTGCACCTCTTCCCACTACCTTATCACAGCAATGCCTTCATTTCCTGCCGGTCAATTCATGCCGTGAACAAGATAAATCCGTCGTTTGTGTATCCCCTGCTCGAGAGATTCTTCAAGTACCAGGAGGGTTATTACAACCAGCCAACGTATGGGAAAACAAGAGCTACAGTGGATGCAGAGGTAGCTAAAAACCTTGTTGCCCCCGTCATTGGGGAAGCCAATTTGGCAGCATACAAAGCAGGTTTCAATGATTCAAAATCA GATCAAGCCACACGAATTTCTTTCAAGTATGGTTGCGCACGAGGTGTTACGGGAACACCGTACTTCTTTGTGAATGGCATCCCCCTTATTAGTGACTCTGGTTCCCCACTGGAATACAACAAGTGGAAATCAATCCTTGATCCATTGGTTGGCAAGATGTAGAGAGTGTTTCAACTAAAGTCCTCTGCCTGGTGTTAAATACAAGACTCAAG ACAAATAAGCTTGGCGCAA AAACAGTATGATTTCGCCAAGATATAGATGGAACGATATTGATCACAAAGATCAAGTTTAGTTAGGCAAATAAAAGGGCAACCCTACTCTAATGACATATATTGTCTTTACCTTGTATTATGAGACAGAAAAGAATTTCTATAATACAAAAGAGATGTAGCTCTCACATACAATGGTATCCCAGTGTGCTACCAAGAAGACTTGTATGAAATATAGTATGCATTTTAAaaaaaaaga ] [-] EMBL CA762116 [ agccaagggGTACCAGGAGGGTTATTACAACCAGCCAANGTATGGGAAAACAAGAGCTACAGTGGATGCAGAGGTAGCTAAAAACCTTGTTGCCCCCGTCATTGGGGAAGCCAATTTGGCAGCATACAAAGCAGGTTTCAATGATTCAAAATCA GATCAAGCCACACGAATTTCTTTCAAGTATGGTTACGCACGAGGTGTTACGGGAACACCGTACTTCTTTGTGAATGGCATCCCCCTTATTAGTGACTCTGGTTCCCCACTGGAATACAACAAGTGGAAATCAATCCTTGATCCATTGGTTGGCAAGATGTAGAGAGTGTTTCAACTAAAGTCCTCTGCCTGGTGTTAAATACAAGACTCAAG ACAAATAAGCTTGACGCAA AAACAGTATGATTTCGCCAAGATATAGATGGAACGATATTGATCACAAAGATCAAGTTTAGTTAGGCAAATAAAAGGGCAACCCTACTCTAATGACATATATTGTCTTTACCTTGTATTATGAGACAGAAGAGAATTTCTATAATACAAAAGAGATGTGGCTCTCTCATACAATGGTATCCCAGTGTGCTACCAACAAGACTTGTATGAAATATAGTATGCATTTTAAGATTTCGGATGTTATGCCAAAaaaaaaaaa ] [+] EMBL BI794939 [ CATACAAA CA GTTTCAATGATTC AAATCACGATCAA CCACACGAATTTCTTTCAAGTAT GTTGCGCACGAGGTGTTACGGGAACACCGTACTTCTTTGTGAAT GCATCCCCCTTATTAGTGACTCTGGTTCCCCACTGGAATAC ACAAGTGGAAATCAATCCTTGATCCATTGGTTGGCAAGATGTAGAGAGTGTTTCAACTAAAGTCCTCTGCCTGGTGTTAAATACAAGACTCAAG AC AATAAGCTTGACGC A AAAC GTATGATTTCGCCAAGATATAGATGGAACGATATTGATCACAAAGATCAAGTTTAGTTAGGCAAATAAAAGGGCAACCCTACTCTAATGACATATATTGTCTTTACCTTGTATTATGAGACAGAAAAGAATTTCTATAATAC AAAGAGATGTAGCTCTCAAAAAAAAa ] [+] EMBL AU032401 [ CCCTTATTAGTGACNCTGGTTCCCCACTGGAATACAANAAGTGGCAATCAATCCTTGANCCATTGGTTGGCAAGATGTAGNGAGTNTTTCAACTAAAGTCCTCTGCCTGGTGTTAAATACAAGACTCAAGAACAAATAAGTTTGGCGCAACACTCAGTATGATTTCGCCAAGATATAGATGGANCGATATNGATCACAAAGATCAAGTTTAGTTAGGCAAATAAAAGGGCAACCCTACTCTAATGNCATATATTGTCTTTACCTTGTATTATGAGACAGAAAAGAATTTCTATAATACAAAAGAGATGTAGCTCTCACATAAAAaa ] [+] EMBL AU096660 [ ATCAATCCTTGATCCATTGGTTGGCAAGATGTAGAGAGTGTTTCAACTAAAGTCCTCTGCCTGGTGTTAAATNCAAGACTCAAG NCAAATAAGCTTGGCGCAA AAACAGTATGATTTCNCCAAGATATAGATGGAACGATATTGATCNCAAAGATCAAGTTTAGTTAGGCAAATAAANGGGCAACCCTACTCTAATGACATATATTGTCTTTNCCTTGTATTATGAGACAGAAAAGAATTTCTATAATACAAAAGAGATGTAGCTCTCACATACAATGGTATCCCAGTGTGCTACCAACAAGACTTGTATGAAATATAGTATGCATTTTAAGATTTCGGATGTTATGCCAAACTACATTGATAAGGAAGCAGTGTTACATTCCTTGGTTTTCATTAAAAAAAAAAAAAAAAAAAAAAAAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||