These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13576#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1364 fasta sequence [GTTCTCCTC-CCCCAAAACCTCCACTTGTTTCTTCAGACCCCAAGCCGATGGCGGAGGCGTCCTCGTCCTCGGCGGCGGCGGTCCCGCCGCTGGACCCGGAGGCGATTGCCGCCGTGGCGGAGGCAGCGCCACCGGAGGAGATGACGCTGGTGGCGAAGTGGAAAGGGAACGACTACACGGTGCGGGTGGTCGGGGACGACACGCTGGGGGAGCTGAAGCGGCGCATCTGCGAGGTCACGGGGGTTCTCCCTAAACGGCAGAAGCTGCTCTACCCCAAGTTCAAGCTCAACGAGTGCAAGGACTCCGAGCTCATCTCCTCCATCCCCTTCAAGCCCAACGTCAAGATCAACATGATCGGCACTGTTGAAGATGAAATATTTGTGGACCAAGAAGATGATCCAGAGATACTCAATGATTATGAAATAGGCCAGAATGAAGTTACTGCTATCAAGGATAAAGATGTCTACAAGCAAAAACTAAAACGGCGTGCAAGTCAATATAAGATCAAGATATTGAATCCATGCCGCAAAGGGAAAAAACTGCTTGTCTTAGACATTGATTATACTCTATTCGACCATAGGTCCGCTGCTGAGAACCCTATCGAATTGATGCGTCCATATCTACACGAGTTCCTCTCTGCTGCATATTCAGAATATGATATCATGATATGGTCAGCAACTAGCATGAAATGGGTGGGGATGAAGATGGACCAACTTGGAGTTCTTGGCAACCCCAACTACAAAATTACTGCTCTTATGGATCACTTGGCGATGATAACTGTGCAATCTGAAAACCTGTCAGAAAAGAAAACTTTTGATTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCCGAGTACAATGAAACAAACACAATCATGTTTGATGACCTCAGAAGGAACTTTGTCATGAATCCACAGAATGGTCTTGTGATCAAACCATACAAGAGGACCCATTCAAACAGAGGCACTGATCAAGAGCT-GGTGAAGCTTAC-ACAATACCTGCTT-ACCATTGCAGAGCTAGAAGATTTGAGCAAGCTTGACCATAGT-GCATGGGAATCCTTCACAGAAGAAAAT-GCCAAGAGACGCAGACACAGGTAG-TTTTTGCTCAGTGTA-TTGATCAGCAGGAAAGAAAAGTTCGCCCTCCTTTTTGTTCACTGCTATTAACTGCATAGACTAGAATAT-CTTGGA-TTGA-CCATGACAACCACAATGCTACTTAGAATACTCTACATATATCCCTGCGTTCGATCTG-CAC-AAAA-ACA-TTTCCAAACTGCAACAGTTATTTTTTAAAAAAAATGTGTGCATTTCAACGTTAAACCTAGAGGCTTTGCACTATGCTCATTTTTCAAAAAAAAAAAAAAAAGG] [+] EMBL CB673050 [GTTCTCCTC CCCCAAAACCTCCACTTGTTTCTTCAGACCCCAAGCCGATGGCGGAGGCGTCCTCGTCCTCGGCGGCGGCGGTCCCGCCGCTGGACCCGGAGGCGATTGCCGCCGTGGCGGAGGCAGCGCCACCGGAGGAGATGACGCTGGTGGCGAAGTGGAAAGGGAACGACTACACGGTGCGGGTGGTCGGGGACGACACGCTGGGGGAGCTGAAGCGGCGCATCTGCGAGGTCACGGGGGTTCTCCCTAAACGGCAGAAGCTGCTCTACCCCAAGTTCAAGCTCAACGAGTGCAAGGACTCCGAGCTCATCTCCTCCATCCCCTTCAAGCCCAACGTCAAGATCAACATGATCGGCACTGTTGAAGATGAAATATTTGTGGACCAAGAAGATGATCCAGAGATACTCAATGATTATGAAATAGGCCAGAATGAAGTTACTGCTATCAAGGATAAAGATGTCTACAAGCAAAAACTAAAACGGCGTGCAAGTCAATATAAGATCAAGATATTGAATCCATGCCGCAAAGGGAAAAAACTGCTTGTCTTAGACATTGATTATACTCTATTCGACCATAGGTCCGCTGCTGAGAACCCTATCGAATTGATGCGTCCATATCTACACGAGTTCCTCTCTGCTGCATATTCAGAATATGATATCATGATATGGTCAGCAACTAGCATGAAATGGGTGGGGATGAAGATGGACCAACTTGGAGTTCTTGGCAACCCCAACTACAAAATTACTGCTCTTATGGATCACTTGGCGATGATAACTGTGCAA ] [+] EMBL CB681996 [GTTC CCTCTCACCAAAACCTCCACTTGTTTCTTCAGACCCCAAGCCGATGGCGGAGGCGTCCTCGTCCTCGGCGGCGCCGGTCCCGCCGCTGGACCCGGAGGCGATTGCCGCCGTGGCGGAGGCAGCGCCACCGGAGGAGATGACGCTGGTGGCGAAGTGGAAAGGGAACGACTACACGGTGCGGGTGGTCGGGGACGACACGCTGGGGGAGCTGAAGCGGCGCATCTGCGAGGTCACGGGGGTTCTCCCTAAACGGCAGAAGCTGCTCTACCCCAAGTTCAAGCTCAACGAGTGCAAGGACTCCGAGCTCATCTCCTCCATCCCCTTCAAGCCCAACGTCAAGATCAACATGATCGGCACTGTTGAAGATGAAATATTTGTGGACCAAGAAGATGATCCAGAGATACTCAATGATTATGAAATAGGCCAGAATGAAGTTACTGCTATCAAGGATAAAGATGTCTACAAGCAAAAACTAAAACGGCGTGCAAGTCAATATAAGATCAAGATATTGAATCCATGCCGCAAAGGGAAAAAACTGCTTGTCTTAGACATTGATTATACTCTATTCGACCATAGGTCCGCTGCTGAGAACCCTATCGAATTGATGCGTCCATATCTACACGAGTTCCTCTCTGCTGCATATTCAGAATATGATATCATGATATGGTCAGCAACTAGCATGAAATGGGTGGGGATGAAGATGGACCAACTTGGAGTTCTTGGCAACCCCAACTACAAAATTACTGCTCTTATGGATCACTTGGCGATGATAAC ] [+] EMBL AK068371 [ CTTCAGACCCCAAGCCGATGGCGGAGGCGTCCTCGTCCTCGGCGGCGGCGGTCCCGCCGCTGGACCCGGAGGCGATTGCCGCCGTGGCGGAGGCAGCGCCACCGGAGGAGATGACGCTGGTGGCGAAGTGGAAAGGGAACGACTACACGGTGCGGGTGGTCGGGGACGACACGCTGGGGGAGCTGAAGCGGCGCATCTGCGAGGTCACGGGGGTTCTCCCTAAACGGCAGAAGCTGCTCTACCCCAAGTTCAAGCTCAACGAGTGCAAGGACTCCGAGCTCATCTCCTCCATCCCCTTCAAGCCCAACGTCAAGATCAACATGATCGGCACTGTTGAAGATGAAATATTTGTGGACAAAGAAGATGATCCAGAGATACTCAATGATTATGAAATAGGCCAGAATGAAGTTACTGCTATCAAGGATAAAGATGTCTACAAGCAAAAACTAAAACGGCGTGCAAGTCAATATAAGATCAAGATATTGAATCCATGCCGCAAAGGGAAAAAACTGCTTGTCTTAGACATTGATTTTACTCTATTCGACCATAGGTCCGCTGCTGAGAACCCTATCGAATTGATGCGTCCATATCTACACGAGTTCCTCTCTGCTGCATATTCAGAATATGATATCATGATATGGTCAGCAACTAGCATGAAATGGGTGGGGATGAAGATGGACCAACTTGGAGTTCTTGGCAACCCCAACTACAAAATTACTGCTCTTATGGATCACTTGGCGATGATAACTGTGCAATCTGAAAACCTGTCAGAAAAGAAAACTTTTGATTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCCGAGTACAATGAAACAAACACAATCATGTTTGATGACCTCAGAAGGAACTTTGTCATGAATCCACAGAATGGTCTTGTGATCAAACCATACAAGAGGACCCATTCAAACAGAGGCACTGATCAAGAGCT GGTGAAGCTTAC ACAATACCTGCTT ACCATTGCAGAGCTAGAAGATTTGAGCAAGCTTGACCATAGT GCATGGGAATCCTTCACAGAAGAAAAT GCCAAGAGACGCAGACACAGGTAG TTTTTTCTCAGTGTA TTGATCAGCAGGAAAGAAAAGTTCGCCCTCCTTTTTGATCACTGCTATTAACTGCATAGACTAGAATAT CTTGGA TTGA CCATGACAACCACAATGCTACTTAGAATACTCTACATATATCCCTGCGTTCGATCTG CAC AAAA ACA TTTCCAAACTGCAACAGTTATTTTTTAACCTTCCTGTGTGCATTTCAA ] [-] EMBL CB681997 [ CTCTATTCGACCATAGGTCCGCTGCTGAGAACCCTATCGAATTGATGCGTCCATATCTACACGAGTTCCTCTCTGCTGCATATTCAGAATATGATATCATGATATGGTCAGCAACTAGCATGAAATGGGTGGGGATGAAGATGGACCAACTTGGAGTTCTTGGCAACCCCAACTACAAAATTACTGCTCTTATGGATCACTTGGCGATGATAACTGTGCAATCTGAAAACCTGTCAGAAAAGAAAACTTTTGATTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCCGAGTACAATGAAACAAACACAATCATGTTTGATGACCTCAGAAGGAACTTTGTCATGAATCCACAGAATGGTCTTGTGATCAAACCATACAAGAGGACCCATTCAAACAGAGGCACTGATCAAGAGCT GGTGAAGCTTAC ACAATACCTGCTT ACCATTGCAGAGCTAGAAGATTTGAGCAAGCTTGACCATAGT GCATGGGAATCCTTCACAGAAGAAAAT GCCAAGAGACGCAGACACAGGTAG TTTTTTCTCAGTGTA TTGATCAGCAGGAAAGAAAAGTTCGCCCTCCTTTTTGATCACTGCTATTAACTGCATAGACTAGAATAT CTTGGA TTGA CCATGACAACCACAATGCTACTTAGAATACTCTACATATATCCCTGCGTTCGATCTG CAC AAAA ACA TTTCCAAACTGCAACAGTTATTTTTTAACCTTCCTGTGTGCAT ] [-] EMBL CB673051 [ CACGAGTTCCTCTCTGCTGCATATTCAGAATATGATATCATGATATGGTCAGCAACTAGCATGAAATGGGTGGGGATGAAGATGGACCAACTTGGAGTTCTTGGCAACCCCAACTACAAAATTACTGCTCTTATGGATCACTTGGCGATGATAACTGTGCAATCTGAAAACCTGTCAGAAAAGAAAACTTTTGATTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCCGAGTACAATGAAACAAACACAATCATGTTTGATGACCTCAGAAGGAACTTTGTCATGAATCCACAGAATGGTCTTGTGATCAAACCATACAAGAGGACCCATTCAAACAGAGGCACTGATCAAGAGCT GGTGAAGCTTAC ACAATACCTGCTT ACCATTGCAGAGCTAGAAGATTTGAGCAAGCTTGACCATAGT GCATGGGAATCCTTCACAGAAGAAAAT GCCAAGAGACGCAGACACAGGTAGTTTTTTTCTCAGTGTA TTGATCAGCAGGAAAGAAAAGTTCGCCCTCCTTTTTGATCACTGCTATTAACTGCATAGACTAGAATAT CTTGGA TTGA CCATGACAACCACAATGCTACTTAGAATACTCTACATATATCCCTGCGTTCGATCTG CAC AAAA ACA TTTCCAAACTGCAACAGTTATTTTTTAACCTTCCTGTGTGCATTTCAACGTTAAACCTAGAGGCTTTGCACTATGCTCATTTTTCAAAAAAAAAAAAAAAAGG] [-] EMBL CF335480 [ CGATGATAACTGTGCAATCTGAAAACCTGTCAGAAAAGAAAACTTTTGATTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCCGAGTACAATGAAACAAACACAATCATGTTTGATGACCTCAGAAGGAACTTTGTCATGAATCCACAGAATGGTCTTGTGATCAAACCATACAAGAGGACCCATTCAAACAGAGGCACTGATCAAGAGCT GGTGAAGCTTAC ACAATACCTGCTT ACCATTGCAGAGCTAGAAGATTTGAGCAAGCTTGACCATAGT GCATGGGAATCCTTCACAGAAGAAAAT GCCAAGAGACGCAGACACAGGTAG TTTTTTCTCAGTGTA TTGATCAGCAGGAAAGAAAAGTTCGCCCTCCTTTTTGATCACTGCTATTAACTGCATAGACTAGAATAT CTTGGA TTGA CCATGACAACCACAATGCTACTTAGAATACTCTACATATATCCCTGCGTTCGATCTG CAC AAAA ACA TTTCCAAACTGCAACAGTTATTTTTTAACCTTCCTGTGTGCATTTCAACGTTAAACCTAGAAGCTTTGCACTATGCTCAaaaa ] [+] EMBL BQ907962 [ ctAAGAGCTGGGTGAAGCTTACTACAATACCTGCTTGACCATTGCAGAGCTAGAAGATTTGAGCAAGCTTGACCATAGTGGCATGGGAATCCTTCACAGAAGAAAATNGCCCAGAGACGCAGACACAGGTAG TTTTTGCTCAGTGTA TTGATCANCAGGAAAGAAAAGTTCCCCCTCCGTTTTGTTCACTGCTATTAACTGCATAGACTAGAATAT CTTGGA TTGA CCATGACNACCNCAATGNTACTTAGGATACTCTACATATATCCCNGCGTTCGATCTG CAA AAAA Aaa a ] [+] EMBL BI804160 [ AGCAAGCTTGACCATAGT GCATGGGAATCCTTCACAGAAGAAAAT GCCAAGAGACGCAGACACAGGTAG TTTTTGCTCAGTGTA TTGATCAGCAGGAAAGAAAAGTTCGCCCTCCTTTTTGTTCACTGCTATTAACTGCATAGACTAGAATAT CTTGGA TTGA CCATGACAACCACAATGCTACTTAGAATACTCTACATATATCCCTGCGTTCGATCTG CAC AAAA ACACTTTCCAAACTGCAACAGTTATTTTTTAAAAAAAA ] [+] EMBL BI803240 [ AGC AGCTTGACCATAGT GCATGGGAATCCTTCACAGAAGAAAAT GCCAAGAGACGCAGACACAGGTAG TTTTTGCTCAGTGTACTTGATCAGCAGGAAAGAAAAGTTCGCCCTCCTTTTTGTTCACTGCTATTAACTGCATAGACTAGAATAT CTTGGA TTGA CCATGACAACCACAATGCTACTTAGAATACTCTACATATATCCCTGCGTTCGATCTGCCAC AAAACAC TTTCC AACTGCCACAGTTATTTTTTAAAAAAAA ] [+] EMBL BI803766 [ AGCAAGCTTGACCATAGT GCATGGGAATCCTTCACAGAAGAAAAT GCCAAGAGACGCAGACACAGGTAG TTTTTGCTCAGTGTA TTGATCAGCAGGAAAGAAAAGTTCGCCCTCCTTTTTGTTCACTGCTATTAACTGCATAGACTAGAATAT CTTGGA TTGA CCATGACAACCACAATGCTACTTAGAATACTCTACATATATCCCTGCGTTCGATCTG CAC AAAA CCT CTTCC AACTGCCACAGTTATTTTTTAAAAAAAA ] [+] EMBL BI804093 [ AGCAAGCTTGACCATAGT GCATGGGAATCCTTCACAGAAGAAAAT GCCAAGAGACGCAGACACAGGTAG TTTTTGCTCAGTGTA TTGATCAGCAGGAAAGAAAAGTTCGCCCTCCTTTTTGTTCACTGCTATTAACTGCATAGACTAGAATATCCTTGGATTTGACCCATGACAACCAC ATGCTACTTAGAATACTCTACATATATCCCTGCGTTCGATCTG CAC AAA ACA TTTCC AACTGC ACAGTTATTTTTTAAAAAAAA ] [+] EMBL BI801302 [ AGCAAGC TGACCATAGT GCATGGGAATCCTTCACAGAAGAAAAT GCC AGAGACGCAGACACAGGTAG TTTTTGCTCAGTGTA TTGATCAGCAGGAAAGAAAAGTTCGCCCTCCTTTTTGTTCACTGCTATTAACTGCATAGACTAGAATAT CTTGGA TTGA CCATGAC ACCAC ATGCTACTTAGAATACTCTACATATATCCCTGCGTTCGATCTG CACGAAAA ACA TTTCCCAACTGC ACAGTTATTTTTTAAAAAAAA ] consensusID : consensus_13576#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 326 fasta sequence [CTGCTTACCATTGCAGAGCTAGAAGATTTGAGCAAGCTTGACCATAGTGCATGGGAATCCTTCACAGAAGAAAATGCCAAGAGACGCAGACACAGGTAGTTTTTTCTCAGTGTATTGATCAGCAGGAAAGAAAAGTTCGCCCTCCTTTTTGATCACTGCTATTAACTGCATAGACTAGAATATCTTGGATTGACCATGACAACCACAATGCTACTTAGAATACTCTACATATATCCCTGCGTTCGATCTGCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF310630 [CTGCTTACCATTGCAGAGCTAGAAGATTTGAGCAAGCTTGACCATAGTGCATGGGAATCCTTCACAGAAGAAAATGCCAAGAGACGCAGACACAGGTAGTTTTTTCTCAGTGTATTGATCAGCAGGAAAGAAAAGTTCGCCCTCCTTTTTGATCACTGCTATTAACTGCATAGACTAGAATATCTTGGATTGACCATGACAACCACAATGCTACTTAGAATACTCTACATATATCCCTGCGTTCGATCTGCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13576#0 GTTCTCCTCCCCCAAAACCTCCACTTGTTTCTTCAGACCCCAAGCCGATGGCGGAGGCGT 60 consensus_13576#1 ------------------------------------------------------------ consensus_13576#0 CCTCGTCCTCGGCGGCGGCGGTCCCGCCGCTGGACCCGGAGGCGATTGCCGCCGTGGCGG 120 consensus_13576#1 ------------------------------------------------------------ consensus_13576#0 AGGCAGCGCCACCGGAGGAGATGACGCTGGTGGCGAAGTGGAAAGGGAACGACTACACGG 180 consensus_13576#1 ------------------------------------------------------------ consensus_13576#0 TGCGGGTGGTCGGGGACGACACGCTGGGGGAGCTGAAGCGGCGCATCTGCGAGGTCACGG 240 consensus_13576#1 ------------------------------------------------------------ consensus_13576#0 GGGTTCTCCCTAAACGGCAGAAGCTGCTCTACCCCAAGTTCAAGCTCAACGAGTGCAAGG 300 consensus_13576#1 ------------------------------------------------------------ consensus_13576#0 ACTCCGAGCTCATCTCCTCCATCCCCTTCAAGCCCAACGTCAAGATCAACATGATCGGCA 360 consensus_13576#1 ------------------------------------------------------------ consensus_13576#0 CTGTTGAAGATGAAATATTTGTGGACCAAGAAGATGATCCAGAGATACTCAATGATTATG 420 consensus_13576#1 ------------------------------------------------------------ consensus_13576#0 AAATAGGCCAGAATGAAGTTACTGCTATCAAGGATAAAGATGTCTACAAGCAAAAACTAA 480 consensus_13576#1 ------------------------------------------------------------ consensus_13576#0 AACGGCGTGCAAGTCAATATAAGATCAAGATATTGAATCCATGCCGCAAAGGGAAAAAAC 540 consensus_13576#1 ------------------------------------------------------------ consensus_13576#0 TGCTTGTCTTAGACATTGATTATACTCTATTCGACCATAGGTCCGCTGCTGAGAACCCTA 600 consensus_13576#1 ------------------------------------------------------------ consensus_13576#0 TCGAATTGATGCGTCCATATCTACACGAGTTCCTCTCTGCTGCATATTCAGAATATGATA 660 consensus_13576#1 ------------------------------------------------------------ consensus_13576#0 TCATGATATGGTCAGCAACTAGCATGAAATGGGTGGGGATGAAGATGGACCAACTTGGAG 720 consensus_13576#1 ------------------------------------------------------------ consensus_13576#0 TTCTTGGCAACCCCAACTACAAAATTACTGCTCTTATGGATCACTTGGCGATGATAACTG 780 consensus_13576#1 ------------------------------------------------------------ consensus_13576#0 TGCAATCTGAAAACCTGTCAGAAAAGAAAACTTTTGATTGCAAGCCTCTTGGTGTCATTT 840 consensus_13576#1 ------------------------------------------------------------ consensus_13576#0 GGGCTCAGTTCCCCGAGTACAATGAAACAAACACAATCATGTTTGATGACCTCAGAAGGA 900 consensus_13576#1 ------------------------------------------------------------ consensus_13576#0 ACTTTGTCATGAATCCACAGAATGGTCTTGTGATCAAACCATACAAGAGGACCCATTCAA 960 consensus_13576#1 ------------------------------------------------------------ consensus_13576#0 ACAGAGGCACTGATCAAGAGCTGGTGAAGCTTACACAATACCTGCTTACCATTGCAGAGC 1020 consensus_13576#1 -----------------------------------------CTGCTTACCATTGCAGAGC 19 ******************* consensus_13576#0 TAGAAGATTTGAGCAAGCTTGACCATAGTGCATGGGAATCCTTCACAGAAGAAAATGCCA 1080 consensus_13576#1 TAGAAGATTTGAGCAAGCTTGACCATAGTGCATGGGAATCCTTCACAGAAGAAAATGCCA 79 ************************************************************ consensus_13576#0 AGAGACGCAGACACAGGTAGTTTTTGCTCAGTGTATTGATCAGCAGGAAAGAAAAGTTCG 1140 consensus_13576#1 AGAGACGCAGACACAGGTAGTTTTTTCTCAGTGTATTGATCAGCAGGAAAGAAAAGTTCG 139 ************************* ********************************** consensus_13576#0 CCCTCCTTTTTGTTCACTGCTATTAACTGCATAGACTAGAATATCTTGGATTGACCATGA 1200 consensus_13576#1 CCCTCCTTTTTGATCACTGCTATTAACTGCATAGACTAGAATATCTTGGATTGACCATGA 199 ************ *********************************************** consensus_13576#0 CAACCACAATGCTACTTAGAATACTCTACATATATCCCTGCGTTCGATCTGCACAAAAAC 1260 consensus_13576#1 CAACCACAATGCTACTTAGAATACTCTACATATATCCCTGCGTTCGATCTGCACAAAAAA 259 *********************************************************** consensus_13576#0 ATTTCCAAACTGCAACAGTTATTTTTTAAAAAAAATGTGTGCATTTCAACGTTAAACCTA 1320 consensus_13576#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 319 * *** ** * * ******** * ** *** * consensus_13576#0 GAGGCTTTGCACTATGCTCATTTTTCAAAAAAAAAAAAAAAAGG 1364 consensus_13576#1 AAAAAAA------------------------------------- 326 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||