These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13580#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1160 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGAGAACTGTCCTGCAAACATGCATTTATATTGCAAAGAGGACTCTTTTTTTTTTGTCTCAGACAAAGGATGAATTGGCTTTGCCATACTATCAAAGTTTCATGTTCAATGCTGGTACATTTCATTGATTATAATGACCAAAAAGAATGGTCAACAATATGATTCTTTTATTTCAGTTTTATTTCTCATAGCAGTCAACTCTTGTAATTCCCTTTGGATGAATTTTCCACTGCATCTAGGGTGGCATTAGGTGGTCTACTGGTCTTTACATCGATTGTGACCTTCGCTGGGCTTCTCTTGAATGAGACTAAAATCCTTAGAAATGAGTATTCGAATGCAAATGATTGATTCCCGTCAAGGTTGAGGGATCTTGCTATATCGTTCCTTCGCAAACGTCGCGAAACGTTCTAAACCTTGCATAAGCAGCCCTTCCAGAAATGGCTTCAGTGCTGACGCAACAGGTGCCAAAATTTCAGGAACTTCATAAGCCACCGTCAGTTGTACTCTGCAAGAGGATGA-GCTTTTAGGAAAGAAACGAACAGCACCCCTATTTTGAAGACCTTCAAGAGATCGCCAATGGATCTTTTGGTTTTTAGTAGGTGTCATGTTTCGAGCTAGCCACGAAAATTCTACATCTCGACCAAGTATCTCATACTTCAAAGTCCAACGTGATTGATCTGGTTTATCTTCAAGGATCTTGACAGATGAGATAAATGGCATCCATTGAGGAATGGTCTCACGTTCTGAGTAACACTGATAAGCCACTGAACAGGGAACATCGACTTCAATCTCGGTGCTGCACTCCTGCCACTCCATGGCCACAGGGGAGAAGAGCGCAGGTCTCGACATGGGCTTGGCCCTTGCCCTGCTGCTGNTGNTGATTTTCACCTT--CCCCTC-CCCTCTCCTCCTCCTCATCCACCATCTGCTGCTGCTGCTGCTGATAAAGAAGACACCGCTGCTGCTCGGCCTCAACGACGGCGACGAGGTGGCGAAGGCGTCGAGGCTTGCCCTCCCCGCCGCGGCAGGGCGGTAGCAGCAGGCAGCTCCTGCGGCCATGGCGGCTCTTCTTCTTCTTCTCCTCTCCCTCGTGTGAGTCGTGTCCTCGTGTTTGCCTGGTTGTC] [-] EMBL AU057536 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGAGAACTGTCCTGCAAACATGCATTTATATTGCAAAGAGGACTCAGCGCAATTTGTCTCAGACAAAGGATGAATTGGCTTTGCCATACTATCAAAGTTTCATGTTCAATGCTGGTACATTTCATTGATTATAATGACCAAAAAGAATGGTCAACAATATGATTCTTTTATTTCAGTTTTATTTCTCATAGCAGTCAACTCTTGTAATTCCCTTTGGATGAATTTTCCACTGCATCTAGGGTGGCATTAGGNGGNCTACTGGTCTTTACATCGATTGTGACCTTCGCTGGGCTTCTCTTGAATGAGACTAAAATCCTTAGAAATGAGTATTCGAATGCAAATGATTGATTCCCGTCAAGGTTGAGGGATCTTGCTANATCGTTCCTTCGCAAACGTCGCGAAACGTTCTAAACCTTGCATAAGCAGCCCTTCCAGAAATGGNTTCAGTGCTGACGC ] [-] EMBL BM419524 [ TTTTTTTTTTGTCTCAGACAAAGGATGAATTGGCTTTGCCATACTATCAAAGTTTCATGTTCAATGCTGGTACATTTCATTGATTATAATGACCAAAAAGAATGGTCAACAATATGATTCTTTTATTTCAGTTTTATTTCTCATAGCAGTCAACTCTTGTAATTCCCTTTGGATGAATTTTCCACTGCATCTAGGGTGGCATTAGGTGGTCTACTGGTCTTTACATCGATTGTGACCTTCGCTGGGCTTCTCTTGAATGAGACTAAAATCCTTAGAAATGAGTATTTGAATGCAAATGATTGATTCCCGTCAAGGTTGAGGGATCTTGCTATATCGTTCCTTCGCAAACATCGCGAAACGTTCTAAACCTTGCATAAGCAGCCCTTCCAGAAATGGCTTCAGTGCTGACGCAACAGGTGCCAAAATTTCAGGAACTTCATAAGCCACCGTCAGTTGTACTCTGCAAGAGGATGACGCTTTTAGGAAAGAAACGAACAGCACCCCTATTTTGA ] [-] EMBL BI808966 [ TTTTTTTTTTGTCTCAGACAAAGGATGAATTGGCTTTGCCATACTATCAAAGTTTCATGTTCAATGCTGGTACATTTCATTGATTATAATGACCAAAAAGAATGGTCAACAATATGATTCTTTTATTTCAGTTTTATTTCTCATAGCAGTCAACTCTTGTAATTCCCTTTGGATGAATTTTCCACTG ATCTAGGGTGGCATTAGGTGGTCTACTGGTCTTTACATCGATTGTGACCTTCGCTGGGCTTCTCTTGAATGAGACTAAAATCCTTAGAAATGAGTATTTGAATGCAAATGATTGATTCCCGTCAAGGTTGAGGGATCTTGCTATATCGTTCCTTCGCAAACATCGCGAAACGTTCTAAACCTTGCATAAGCAG CCTTCCAGAAATGGCTTCAGTGCTGACGCAACAGGTGC ] [+] EMBL CF294200 [ TTTTTTTTTCAAACAAAGGATGATTTGGCTTTGCCATACTATCAAAGTTTCATGTTCAATGCTGGTACATTTCATTGATTATAATGACCAAAAAGAATGGTCAACAATATGATTCTTTTATTTCAGTTTTATTTCTCATAGCAGTCAACTCTTGTAATTCCCTTTGGATGAATTTTCCACTGCATCTAGGGTGGCATTAGGTGGTCTACTGGTCTTTACATCGATTGTGACCTTCGCTGGGCTTCTCTTGAATGAGACTAAAATCCTTAGAAATGAGTATTCGAATGCAAATGATTGATTCCCGTCAAGGTTGAGGGATCTTGCTATATCGTTCCTTCGCAAACGTCGCGAAACGTTCTAAACCTTGCATAAGCAGCCCTTCCAGAAATGGCTTCAGTGCTGACGCAACAGGTGCCAAAATTTCAGGAACTTCATAA ] [+] EMBL CF304226 [ CAAAGGATGAATTGGCTTTGCCATACTATCAAAGTTTCATGTTCAATGCTGGTACATTTCATTGATTATAATGACCAAAAAGAATGGTCAACAATATGATTCTTTTATTTCAGTTTTATTTCTCATAGCAGTCAACTCTTGTTATTCCCTTTGGATGAATTTTCCACTGCATCTAGGGTGGCATTAGGTGGTCTACTGGTCTTTACATCGATTGTGACCTTCGCTGGGCTTCTCTTGAATGAGACTAAAATCCTTAGAAATGAGTATTCGAATGCAAATGATTGATTCCCGTCAAGGTTGAGGGATCTTGCTATATCGTTCCTTCGCAAACGTCGCGAAACGTTCTAAACCTTGCATAAGCAGCCCTTCCAGAAATGGCTTCAGTGCTGACGCAACAGGTGCCAAAATTTCAGGAACTTCATAAGCCACCGTCAGTTGTACTCTGCAAGAGGATGA GCTTTTAGGAAAGAAACGAACAGCACCCCTATTTTGAAGACCTTCAAGAGATCGCCAATGGATCTT ] [+] EMBL CF304557 [ CAAAGGATGAATTGGCTTTGCCATACTATCAAAGTTTCATGTTCAATGCTGGTACATTTCATTGATTATAATGACCAAAAAGAATGGTCAACAATATGATTCTTTTATTTCAGTTTTATTTCTCATAGCAGTCAACTCTTGTAATTCCCTTTGGATGAATTTTCCACTGCATCTAGGGTGGCATTAGGTGGTCTACTGGTCTTTACATCGATTGTGACCTTCGCTGGGCTTCTCTTGAATGAGACTAAAATCCTTAGAAATGAGTATTCGAATGCAAATGATTGATTCCCGTCAAGGTTGAGGGATCTTGCTATATCGTTCCTTCGCAAACGTCGCGAAACGTTCTAAACCTTGCATAAGCAGCCCTTCCAGAAATGGCTTCAGTGCTGACGCAACAGGTGCCAAAATTTCAGGAACTTCATAAGCCACCGTCAGTTGTACTCTGCAAGAGGATGA GCTTTTANGAAAGAAACGAACAGCACCCCTATTTTGAAGACCTTCAAGAGATCGCCAATGGATCTT ] [+] EMBL CF334318 [ ttttttTGAATTGGCTTTGCCATACTATCAAAGTTTCATGTTCAATGCTGGTACATTTCATTGATTATAATGACCAAAAAGAATGGTCAACAATATGATTCTTTTATTTCAGTTTTATTTCTCATAGCAGTCAACTCTTGTAATTCCCTTTGGATGAATTTTCCACTGCATCTAGGGTGGCATTAGGTGGTCTACTGGTCTTTACATCGATTGTGACCTTCGCTGGGCTTCTCTTGAATGAGACTAAAATCCTTAGAAATGAGTATTCGAATGCAAATGATTGATTCCCGTCAAGGTTGAGGGATCTTGCTATATCGTTCCTTCGCAAACGTCGCGAAACGTTCTAAACCTTGCATAAGCAGCCCTTCCAGAAATGGCTTCAGTGCTGACGCAACAGGTGCCAAAATTTCAGGAACTTCATAAGCCACCGTCAGTTGTACTCTGCAAGAGGATGA GCTTTTAGGAAAGAAACGAACAGCACCCCTATTTTGAAGACCTTCAAGAGATCG ] [+] EMBL CF314140 [ ttttTTTCATGTTCAATGCTGGTACATTTCATTGATTATAATGACCAAAAAGAATGGTCAACAATATGATTCTTTTATTTCAGTTTTATTTCTCATAGCAGTCAACTCTTGTAATTCCCTTTGGATGAATTTTCCACTGCATCTAGGGTGGCATTAGGTGGTCTACTGGTCTTTACATCGATTGTGACCTTCGCTGGGCTTCTCTTGAATGAGACTAAAATCCTTAGAAATGAGTATTCGAATGCAAATGATTGATTCCCGTCAAGGTTGAAGGATCTTGCTATATCGTTCCTTCGCAAACGTCGCGAAACGTTCTAAACCTTGCATAAGCAGCCCTTCCAGAAATGGCTTCAGTGCTGACGCAACAGGTGCCAAAATTTCAGGAACTTCATAAGCCACCGTCAGTTGTACTCTGCAAGAGGATGA GCTTTTAGGAAAGAAACGAACAGCACCCCTATTTTGAAGACCTTCAAGAGATCGCCAATGGATCTTTTGGTTTTTAGTAGGTGTCATGTTTCGAGCTAGCCACGAAAATTCTACATCTCGACCAAGTATCTCATACTTCAAAGTCCAACGTGATTGATCTGGTTTATCTTCAAGGATCTTGACAGATGAGATAAATGGCATCCATTGAGGAATGGTCTCACGTTCTGAGTAACACTGATAAGCCACTGAACAGGGAACATCG ] [-] EMBL AU057535 [ GCTGGTACATTTCATTGATTATAATGACCAAAAAGAATGGTCAACAATATGATTCTTTTATTTCAGTTTTATTTCTCATAGCAGTCAACTCTTGTAATTCCCTTTGGATGAATTTTCCACTGCATCTAGGGTGGCATTAGGTGGTCTACTGGTCTTTACATCGATTGTGACCTTCGCTGGGCTTCTCTTGAATGAGACTAAAATCCTTAGAAATGAGTATTCGAATGCAAATGATTGATTCCCGTCAAGGTTGAGGGATCTTGCTATATCGTTCCTTCGCAAACGTCGCGAAACGTTCTAAACCTTGCATAAGCAGCCCTTCCAGAAATGGCTTCAGT NTGACGCA ] [-] EMBL CF334317 [ tTTCAAGAGATCGCCAAGGGATCTTTTGGTTTTTAGTAGGTGTCATGTTTCGAGCTAGCCACGAAAATTCTACATCTCGACCAAGTATCTCATACTTCAAAGTCCAACGTGATTGATCTGGTTTATCTTCAAGGATCTTGACAGATGAGATAAATGGCATCCATTGAGGAATGGTCTCACGTTCTGAGTAACACTGATAAGCCACTGAACAGGGAACATCGACTTCAATCTCGGTGCTGCACTCCTGCCACTCCATGGCCACAGGGGAGAAGAGCGCAGGTCTCGACATGGGCTTGGCCCTTGCCCTGCTGCTGNTGNTGATTTTCACCTT CCCCTCNCCCTCTCCTCCTCCTCATCCACCATCTGCTGCTGCTGCTGCTGATAAAGAAGACACCGCTGCTGCTCGGCCTCAACGACGGCGACGAGGTGGCGAAGGCGTCGAGGCTTGCCCTCCCCGCCGCGGCAGGGCGGTAGCAGCAGGCAGCTCCTGCGGCCATGGCGGCTCTTCTTCTTCTTCTC ] [-] EMBL CF314139 [ AGATCGCCAATGGATCTTTTGGTTTTTAGTAGGTGTCATGTTTCGAGCTAGCCACGAAAATTCTACATCTCGACCAAGTATCTCATACTTCAAAGTCCAACGTGATTGATCTGGTTTATCTTCAAGGATCTTGACAGATGAGATAAATGGCATCCATTGAGGAATGGTCTCACGTTCTGAGTAACACTGATAAGCCACTGAACAGGGAACATCGACTTCAATCTCGGTGCTGCACTCCTGCCACTCCATGGCCACAGGGGAGAAGAGCGCAGGTCTCGACATGGGCTTGGCTCTTGCCCTGCTGCTGCTGNTGATTTTNACCTTTCCCCCTC CCCTCTCCTCCTCCTCATCCACCATCTGCTGCTGCTGCTGCTGATAAAGAAGACACCGCTGCTGCTCGGCCTCAACGACGGCGACGAGGTGGCGAAGGCGTCGAGGCTTGCCCTCCCCGCCGCGGCAGGGCGGTAGCAGCAGGCAGCTCCTGCGGCCATGGCGGCTCTTCTTCTTCTTCTCCTCTCCCTCGTGTGAGTCGTGTCCTCGTGTTTGCCTGGTTGTC] [-] EMBL CF294199 [ TCTCCTCCTCCTCATCCACCATCTGCTGCTGCTGCTGCTGATAAAGAAGACACCGCTGCTGCTCGGCCTCAACGACGGCGACGAGGTGGCGAAGGCGTCGAGGCTTGCCCTCCCCGCCGCGGCAGGGCGGTAGCAGCAGGCAGCTCCTGCGGCCATGGCGGCTCTTCTTCTTCTTCTCCTCTCCCTCGTGTGAGTCGTGTCCTCGTGTT ] consensusID : consensus_13580#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 161 fasta sequence [TTCATAATCCAATATGCCAGTTAATTGAATTTTTATAACCCTTGAAAGTTAAGGTAACCTATACTTTACTTCTTGTAGGGGTGTGTTCGTTTCTTTCCTAAAAGCTCATCCTCTTGCAGAGTACAAGTGAGAATTCAGACATGTGAATCTGTGACACTCCT] [+] EMBL AB048719 [TTCATAATCCAATATGCCAGTTAATTGAATTTTTATAACCCTTGAAAGTTAAGGTAACCTATACTTTACTTCTTGTAGGGGTGTGTTCGTTTCTTTCCTAAAAGCTCATCCTCTTGCAGAGTACAAGTGAGAATTCAGACATGTGAATCTGTGACACTCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13580#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGAGAACTGTCCTGCAAACAT 60 consensus_13580#1 ------------------------------------------------------------ consensus_13580#0 GCATTTATATTGCAAAGAGGACTCTTTTTTTTTTGTCTCAGACAAAGGATGAATTGGCTT 120 consensus_13580#1 ------------------------------------------------------------ consensus_13580#0 TGCCATACTATCAAAGTTTCATGTTCAATGCTGGTACATTTCATTGATTATAATGACCAA 180 consensus_13580#1 ------------------------------------------------------------ consensus_13580#0 AAAGAATGGTCAACAATATGATTCTTTTATTTCAGTTTTATTTCTCATAGCAGTCAACTC 240 consensus_13580#1 ------------------------------------------------------------ consensus_13580#0 TTGTAATTCCCTTTGGATGAATTTTCCACTGCATCTAGGGTGGCATTAGGTGGTCTACTG 300 consensus_13580#1 ------------------------------------------------------------ consensus_13580#0 GTCTTTACATCGATTGTGACCTTCGCTGGGCTTCTCTTGAATGAGACTAAAATCCTTAGA 360 consensus_13580#1 ------------------------------------------------------------ consensus_13580#0 AATGAGTATTCGAATGCAAATGATTGATTCCCGTCAAGGTTGAGGGATCTTGCTATATCG 420 consensus_13580#1 ------------------------------------------------------------ consensus_13580#0 TTCCTTCGCAAACGTCGCGAAACGTTCTAAACCTTGCATAAGCAGCCCTTCCAGAAATGG 480 consensus_13580#1 ------------------------------------------------------------ consensus_13580#0 CTTCAGTGCTGACGCAACAGGTGCCAAAATTTCAGGAACTTCATAAGCCACCGTCAGTTG 540 consensus_13580#1 ------------------------------------------------------------ consensus_13580#0 TACTCTGCAAGAGGATGAGCTTTTAGGAAAGAAACGAACAGCACCCCTATTTTGAAGACC 600 consensus_13580#1 ------------------------------------------------------------ consensus_13580#0 TTCAAGAGATCGCCAATGGATCTTTTGGTTTTTAGTAGGTGTCATGTTTCGAGCTAGCCA 660 consensus_13580#1 ------------------------------------------------------------ consensus_13580#0 CGAAAATTCTACATCTCGACCAAGTATCTCATACTTCAAAGTCCAACGTGATTGATCTGG 720 consensus_13580#1 ---------------------------TTCATAATCCAATATGCCAGTTAATTGAATTTT 33 ***** * *** * * * * ***** * consensus_13580#0 TTTATCTTCAAGGATCTTGACAGATGAGATAAATGGCATCCATTG-AGGAATGGTCTCAC 779 consensus_13580#1 TATAACCCTTGAAAGTTA---AGGTAACCTATACTTTACTTCTTGTAGGGGTGTGTTCGT 90 * ** * * * ** * * ** * * *** *** ** ** consensus_13580#0 GTTCTGAGTAACACTGATAAGCCACTGAACAGGGAACATCGACTTCAATCTCGGTGC-TG 838 consensus_13580#1 TTCTTTCCTAAAA--GCTCATCCTCTTG-CAGAGTACA--AGTGAGAATTCAGACATGTG 145 * * *** * * * * ** ** *** * *** *** * ** consensus_13580#0 CACTCCTGCCACTCCATGGCCACAGGGGAGAAGAGCGCAGGTCTCGACATGGGCTTGGCC 898 consensus_13580#1 AATCTGTGACACTCCT-------------------------------------------- 161 * ** ****** consensus_13580#0 CTTGCCCTGCTGCTGNTGNTGATTTTCACCTTCCCCTCCCCTCTCCTCCTCCTCATCCAC 958 consensus_13580#1 ------------------------------------------------------------ consensus_13580#0 CATCTGCTGCTGCTGCTGCTGATAAAGAAGACACCGCTGCTGCTCGGCCTCAACGACGGC 1018 consensus_13580#1 ------------------------------------------------------------ consensus_13580#0 GACGAGGTGGCGAAGGCGTCGAGGCTTGCCCTCCCCGCCGCGGCAGGGCGGTAGCAGCAG 1078 consensus_13580#1 ------------------------------------------------------------ consensus_13580#0 GCAGCTCCTGCGGCCATGGCGGCTCTTCTTCTTCTTCTCCTCTCCCTCGTGTGAGTCGTG 1138 consensus_13580#1 ------------------------------------------------------------ consensus_13580#0 TCCTCGTGTTTGCCTGGTTGTC 1160 consensus_13580#1 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||