These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13593#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 2209 fasta sequence [CAAGTCCCTCAACAAACGAACGCTGCTTTTCGACGAAGAAAAGGAGGGTTCCTCGCTCTGACGCCTTGCGCAGTTGTACCGTACATTCGTACTACCACACAGCTTGAAGAAGAAGAGGGAATTCGACGAGAAATAGTAGAAGCTTGGCGTTCGTGCGAGGAATTCTCGGTGGTTGATCGATCCGTGTTTCGCGGCGGATGGGGCAGGCGTTCCGCAAGCTGTTCGATGCCTTCTTCGGCACCA-GCGAGATGAGGGTCGTGATGCTTGGGCTGGATGCCGCGGGCAAAACCACCATCCTGTACAAGCTGCACATCGGGGAGGTCCTTTCGACTGTTCCTACGATTGGGTTCAATGTTGAGAAAGTACAGTACAAGAACGTGATGTTTACAGTATGGGATGTCGGTGGCCAAGAGAAGTTGAGGCCTCTGTGGAGGCATTACTTCAATAATACGGATGGTTTGGTATGTTTTGTTTCCTTTGTGGTTATCTTTTTGGGAATACGTGAAAGATTTGTGCATCGTTGCATTAAAGAAGGAAAGAAGTGGTTATTTGATTTTGACAGACTTGTGTAATGATATAGTATTATATAGCCATTCTGCATAGGTTATTGTGGTTGACTTTGAGACAAATATTTCTTAGTTTGACTTATTGGTTAAAGTTGTATGGCATGTATGCAATTGTTTTATCCAAAGTATCCATAAGGCTGGTGAGGTTGCTAGATGATCCTTTGAACATTTTTAATTAAAAAATTAAATGCATACCAATATTGATACCGCAAATATGTGTGTTTAAAATCTATGGTAATTCGATTTGAATTTATGTGGAGTTATAGAACTCATTTATTTAAACAATTATGATAGTGAGATAACCCAAATGAGTGGTATAGAATTTCCCAGTTCTCTTTTAATTAACATGAAAACTTACGGATCTAGAAGTACCCTGTGCTTGGCATACTATCTATTTTCATGTAATGGTATTGTAATATAATATAATCATGCTTAATTATCCAGTTAATGGATAATGTTGTCGAGTTTGTCAGATCTTTCACTGTATGAGATTATAGCAATGTTTCTACTAATTCAACACTTAATGAATTGCTCTTTTGTTGATACTGTAAATGATATCTTTGCTTGATTTGATTTGGTTTGATTTATTACAGCTGAACAGAGCCATCTTTCCAGATATAAGCTCATTCTGGATTATTTTGTGCTATATTACCTAATGAAGTTACTAATTAGCTAATGTTATGTCTATAATGTAAACCATACTACTCTTCAGTTACTAATTAGATGATGCTCGTCAGTAAAACTTTATTCTATTTTCTTGTTGATTTGTTTTCCTTGAGAGATCGGCGTGATACTGAAATTCGGATGTATTCATGAGCATACCCAACTACATTTATAAATTGTAATAGCAACTTATTCCTATATGTTATTTTTGCACGTTCTGATTTGCAGATCTATGTAGTTGATTCATTGGATAGAGAGAGAATCGGAAAAGCGAAAGCGGAGTTTCAGGCAATCGTTAATGATCCTTTGATGCTTAACAGTGTAATATTGGTATTTGCCAATAAACAAGATATGAAAGGGGCAATGACGCCGTTGGAGGTGTGCGAAGGCCTTGGCCTCTATGATTTAAAGAATCGCATCTGGCATATCCAAGGCTCTTGTGCCCTCAAAGGTGATGGTCTTTATGAGGGCTTGGACTGGTTGGCAAGTACTCTGAAGGGACTGGAAGCCTCAGGTCGCCTCCCCTCAGGAGGGACCTCATTGTTCTAAGTAGCAGGTCTGCCTGTAAGATTCTTCCGTTGACACTAACAATCTTTGCATCAAAGATGATCATGGGAACAAATTATCTTGGTGTGGAAGGCCTTACATGGTCACACCTTACATTGCTCAGGCGAT-ATGCTTCGCGGTGTCGATTCTACTGAAGGCAAAAGATGCATGAGAGCCTGACTACTTGAAACATTACCACTGCAGTTTTGTCATGGGTAGTAGTGTAGTAGTACCCATCGAGTCTTGTGAATTTCCTTGAATGTTACAGCTAACTATCGGATGCATTTGTTCACATGTGATGAGTGAAACGCATGTTGATGTAAAAAGTTTGTGTAAAGTTATGTTTGGCAAATGCAATTTGTATCAACAAAATCTGATCCCATGAAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGAGTACGTAGCGTATC] [+] EMBL AK067761 [CAAGTCCCTCAACAAACGAACGCTGCTTTTCGACGAAGAAAAGGAGGGTTCCTCGCTCTGACGCCTTGCGCAGTTGTACCGTACATTCGTACTACCACACAGCTTGAAGAAGAAGAGGGAATTCGACGAGAAATAGTAGAAGCTTGGCGTTCGTGCGAGGAATTCTCGGTGGTTGATCGATCCGTGTTTCGCGGCGGATGGGGCAGGCGTTCCGCAAGCTGTTCGATGCCTTCTTCGGCACCA GCGAGATGAGGGTCGTGATGCTTGGGCTGGATGCCGCGGGCAAAACCACCATCCTGTACAAGCTGCACATCGGGGAGGTCCTTTCGACTGTTCCTACGATTGGGTTCAATGTTGAGAAAGTACAGTACAAGAACGTGATGTTTACAGTATGGGATGTCGGTGGCCAAGAGAAGTTGAGGCCTCTGTGGAGGCATTACTTCAATAATACGGATGGTTTGGTATGTTTTGTTTCCTTTGTGGTTATCTTTTTGGGAATACGTGAAAGATTTGTGCATCGTTGCATTAAAGAAGGAAAGAAGTGGTTATTTGATTTTGACAGACTTGTGTAATGATATAGTATTATATAGCCATTCTGCATAGGTTATTGTGGTTGACTTTGAGACAAATATTTCTTAGTTTGACTTATTGGTTAAAGTTGTATGGCATGTATGCAATTGTTTTATCCAAAGTATCCATAAGGCTGGTGAGGTTGCTAGATGATCCTTTGAACATTTTTAATTAAAAAATTAAATGCATACCAATATTGATACCGCAAATATGTGTGTTTAAAATCTATGGTAATTCGATTTGAATTTATGTGGAGTTATAGAACTCATTTATTTAAACAATTATGATAGTGAGATAACCCAAATGAGTGGTATAGAATTTCCCAGTTCTCTTTTAATTAACATGAAAACTTACGGATCTAGAAGTACCCTGTGCTTGGCATACTATCTATTTTCATGTAATGGTATTGTAATATAATATAATCATGCTTAATTATCCAGTTAATGGATAATGTTGTCGAGTTTGTCAGATCTTTCACTGTATGAGATTATAGCAATGTTTCTACTAATTCAACACTTAATGAATTGCTCTTTTGTTGATACTGTAAATGATATCTTTGCTTGATTTGATTTGGTTTGATTTATTACAGCTGAACAGAGCCATCTTTCCAGATATAAGCTCATTCTGGATTATTTTGTGCTATATTACCTAATGAAGTTACTAATTAGCTAATGTTATGTCTATAATGTAAACCATACTACTCTTCAGTTACTAATTAGATGATGCTCGTCAGTAAAACTTTATTCTATTTTCTTGTTGATTTGTTTTCCTTGAGAGATCGGCGTGATACTGAAATTCGGATGTATTCATGAGCATACCCAACTACATTTATAAATTGTAATAGCAACTTATTCCTATATGTTATTTTTGCACGTTCTGATTTGCAGATCTATGTAGTTGATTCATTGGATAGAGAGAGAATCGGAAAAGCGAAAGCGGAGTTTCAGGCAATCGTTAATGATCCTTTGATGCTTAACAGTGTAATATTGGTATTTGCCAATAAACAAGATATGAAAGGGGCAATGACGCCGTTGGAGGTGTGCGAAGGCCTTGGCCTCTATGATTTAAAGAATCGCATCTGGCATATCCAAGGCTCTTGTGCCCTCAAAGGTGATGGTCTTTATGAGGGCTTGGACTGGTTGGCAAGTACTCTGAAGGGACTGGAAGCCTCAGGTCGCCTCCCCTCAGGAGGGACCTCATTGTTCTAAGTAGCAGGTCTGCCTGTAAGATTCTTCCGTTGACACTAACAATCTTTGCATCAAAGATGATCATGGGAACAAATTATCTTGGTGTGGAAGGCCTTACATGGTCACACCTTACATTGCTCAGGCGAT ATGCTTCGCGGTGTCGATTCTACTGAAGGCAAAAGATGCATGAGAGCCTGACTACTTGAAACATTACCACTGCAGTTTTGTCATGGGTAGTAGTGTAGTAGTACCCATCGAGTCTTGTGAATTTCCTTGAATGTTACAGCTAACTATCGGATGCATTTGTTCACATGTGATGAGTGAAACGCATGTTGATGTAAAAAGTTTGTGTAAA ] [+] EMBL CF306024 [ cacgAGGAGAAGAGGGAACTCGACGAGAAATAGTAGAAGCTTGGCGTTCGTGCGAGGAATTCTCGGTGGTTGATCGATCCGTGTTTCGCGGCGGATGGGGCAGGCGTTCCGCAAGCTGTTCGATGCCTTCTTCGGCACCATTCGATANTAGGGTCGTGATGCTTGGGCTGGATGCCGCGGGCAAATTTTTTTTCCTGTACAAGCTGCACATCGGGGAGGTCCTTTCGACTGTTCCTACGATTGGGTTCAATGTTGAGAAAGTACAGTACAAGAACGTGATGTTTACAGTATGGGATGTCGGTGGCCAAGAGAAGTTGAGGCCTCTGTGGAGGCATTACTTCAATAATACGGATGGTTTGGTATGTTTTGTTTCCTTTGTGGTTATCTTTTTGGGAATACGTGAAAGATTTGTGCATCGTTGCATTAAAGAAGGAAAGAAGTGGTTATTTGATTTTGACAGACTTGTGTAATGATATAGTATTATATAGCCATTCTGCATAGGTTAT ] [+] EMBL AU092332 [ TGTAGTTGATNCATTGGATAGAGAGAGANTCGGAAAAGCGAAAGCGGAGTTNCAGGCAATCGTTAATGATCCTTTGATGCTTNACAGTGTAATATTGGTATTTGCCAATAAACAAGATATGAAAGGGGCAATGACGCCGTTGGAGGTGTGCGAAGGCCTTGGCCTCTATGATTTAAAGAATCGCATCTGGCATATCCAAGGCTCTTGTGCCCTCAAAGGTGATGGTCTTTATGAGGGCTTGGACTGGTTGGCAAGTACTCTGAAGGGACTGGAAGCCTCAGGTCGCCTCCCCTCAGGAGGGACCTCATTGTTCTAAGTAGCAGGTCTGCCTGTAAGATTCTTCCGTTGACACTAACAATCTTTGCATCAAAGATGATCATGGGAACAAATTATCTTGGTGTGGAAGGCCTTACATGGTCACACCTTACATTGCTCAGGCGATCAT NTTCGCGGTGTCGATTCTACTGAAGGCAAAAGATGCATGAGAGCCTGACTACTTGAAACATTACCACTGCAGTTTTGTCATGGGTAGTAGTGTAGTAGTACCCATCGAGTCTTGTGAATTTCCTTGAATGTTACAGCTAACTATCGGATGCATTTGTTCACATGTGATGAGTGAAACGCATGTTGATGTAAAAAGTTTGTGTAAAGTTATGTTTGGCAAATGCAATTTGTATCAACAAAAaaaaaaaa ] [-] EMBL CF331071 [ ATGGTCTTTATGAGGGCTTGGACTGGTTGGCAAGTACTCTGAAGGGACTGGAAGCCTCAGGTCGCCTCCCCTCAGGAGGGCCCTCATTGTTTTAAGTAGCAGGTCTGCCTGTAAGATTCTTCCGTTGACACTACCAATCTTTGCATCAAAGATGATCATGGGACCAAATTATTTTGGTGTGGAAGGCCTTACAGGGTCACCCCTTACATTGCTCAGGCGAT ATGCTTCGCGGTGTCGATTCTACTGAAGGCAAAAGATGCATGAGAGCCTGACTACTTGAAACATTACCACTGCAGTTTTGTCATGGGTAGTAGTGTAGTAGTACCCATCGAGTCTTGTGAATTTCCTTGAATGTTACAGCTAACTATCGGATGCATTTGTTCACATGTGATGAGTGAAACGCATGTTGATGTAAAAAGTTTGTGTAAAGTTATGTTTGGCAAATGCAATTTGTATCACCAAAA A A AAAAAAAAAAAAA ] [+] EMBL CF335037 [ CCTTGAATGTTACAGCTAACTATCGGATGCATTTGTTCACATGTGATGAGTGAAACGCATGTTGATGTAAAAAGTTTGTGTAAAGTTATGTTTGGCAAATGCAATTTGTATCAACAAAATCTGATCCCATGAAAAAAAAA ] [-] EMBL CF335038 [ CTTGAATGTTACAGCTAACTATCGGATGCATTTGTTCACATGTGATGAGTGAAACGCATGTTGATGTAAAAAGTTTGTGTAAAGTTATGTTTGGCAAATGCAATTTGTATCAACAAAATCTGATCCCATGAAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGAGTACGTAGCGTATC] consensusID : consensus_13593#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 932 fasta sequence [CAACAAACGAACGCTGCTTTTCGACGAAGAAAAGGAGGGTTCCTCGCTCTGACGCCTTGCGCAGTTGTACCGTACATTCGTACTACCACACAGCTTGAAGAAGAAGAGGGAATTCGACGAGAAATAGTAGAAGCTTGGCGTTCGTGCGAGGAATTCTCGGTGGTTGATCGATCCGTGTTTCGCGGCGGATGGGGCAGGCGTTCCGCAAGCTGTTCGATGCCTTCTTCGGCACCAGCGAGATGAGGGTCGTGATGCTTGGGCTGGATGCCGCGGGCAAAACCACCATCCTGTACAAGCTGCACATCGGGGAGGTCCTTTCGACTGTTCCTACGATTGGGTTCAATGTTGAGAAAGTACAGTACAAGAACGTGATGTTTACAGTATGGGATGTCGGTGGCCAAGAGAAGTTG-AGGCCTCTG-TGGAGGCATTACTTCAATAATACGGATGGTTTGATCTATGTAGTTGATTCATTGGATAGA-GAGAGAATCGGAAAAGCGAAAGCGG-AGTTTCAGGCAATCGTTAATGATCCTTTGATGCTTAACAGTGTAATATTGGTATTTGCCAATAAACAAGATATGAAAGGGGCAATGACGCCGTTGGAGGTGTGCGAAGGCCTTGGCCTCTATGATTTAAAGAATCGCATCCGGCATATCCAAGGCTCTTGTGCCCTCAAAGGTGATGGTCTTTATGANGGCTTGGACTGGTTGGCAAGTACTCTGAANGGACTGGAAGCCTCANGTCGCCTCCCCTCAGGANGGACCTCATTGNTCTAAGTAGCAGGTCTGNCTGTAAGATTCTTNCGNTGACACTAACAATCTTTGCATCAAAGATGATCATGGGAACAAATATCNTGGGGNGGNAAGNCTTACATGGTCACACCTTACATTGCTCAGGCGATATGCTTTCNGGGGNCCGATTNTACTGGAGGCNAA] [+] EMBL CF320641 [CAACAAACGAACGCTGCTTTTCGACGAAGAAAAGGAGGGTTCCTCGCTCTGACGCCTTGCGCAGTTGTACCGTACATTCGTACTACCACACAGCTTGAAGAAGAAGAGGGAATTCGACGAGAAATAGTAGAAGCTTGGCGTTCGTGCGAGGAATTCTCGGTGGTTGATCGATCCGTGTTTCGCGGCGGATGGGGCAGGCGTTCCGCAAGCTGTTCGATGCCTTCTTCGGCACCAGCGAGATGAGGGTCGTGATGCTTGGGCTGGATGCCGCGGGCAAAACCACCATCCTGTACAAGCTGCACATCGGGGAGGTCCTTTCGACTGTTCCTACGATTGGGTTCAATGTTGAGAAAGTACAGTACAAGAACGTGATGTTTACAGTATGGGATGTCGGTGGCCAAGAGAAGTTG AGGCCTCTG TGGAGGCATTACTTCAATAATACGGATGGTTTGATCTATGTAGTTGATTCATTGGATAGA GAGAGAATCGGAAAAGCGAAAGCGG AGTTTCAGGCAATCGTTAATGATCCTTTGATGCTTAACAGTGTAATATTGGTATTTGCCAATAAACAAGATATGAAAGGGGCAAT ] [+] EMBL C26537 [ GAGGGTTCCTCGCTCTGACGCCTTGCGCAGTTGTACCGTACATTCGTACTACCACACAGCTTGAAGAAGAAGAGGGAATTCGACGAGAAATAGTAGAAGCTTGGCGTTCGTGCGAGGAATTCTCGGTGGTTGATCGATCCGTGTTTCGCGGCGGATGGGGCAGGCGTTCCGCAAGCTGTTCGATGCCTTCTTCGGCACCAGCGAGATGAGGGTCGTGATGCTTGGGCTGGATGCCGCGGGCAAAACCACCATCCTGTACAAGCTGCACATCGGGGAGGTCCTTTCGACTGTTCCTACGATTGGGTTCAATGTTGAGAAAGTACAGTACAAGAACGTGATGTTTACAGTATGGGATGTCGGTGGCCAAGAGAAGTTGAAGGCCTCTGTTGGAGGCATTACTTCAATAATACGGATGGTTTNATCTATGTAG ] [+] EMBL CA766031 [ TACCGTACATTCGTACTACCACACAGCTTGAAGAAGAAGAGGGAATTCGACGAGAAGTAGTAGAAGCTTGGCGTTCGTGCGAGGAATTCTCGGTGGTTGATCGATCCGTGTTTCGCGGCGGATGGGGCAGGCGTTCCGCAAGCTGTTCGATGCCTTCTTCGGCACCAGCGAGATGAGGGTCGTGATGCTTGGGCTGGATGCCGCGGGCAAAACCACCATCCTGTACAAGCTGCACATCGGGGAGGTCCTTTCGACTGTTCCTACGATTGGGTTCAATGTTGAGAAAGTACAGTACAAGAACGTGATGTTTACAGTATGGGATGTCGGTGGCCAAGAGAAGTTG AGGCCTCTG TGGAGGCATTACTTCAATAATACGGATGGTTTGATCTATGTAGTTGATTCATTGGATAGA GAGAGAATCGGAAAAGCGAAAGCGG AGTTTCAGGCAATCGTTAATGATCCTTTGATGCTTAACAGTGTAATATTGGTATTTGCCAATAAACAAGATACGAAAGGGGCAATGACGCCGTTGGAGGTGTGCGAAGGCCTTGGCCTCTATGATTTAAAGAATCGCATCCGGCATATCCAAGGCTCTTGTGCCCTCAAAGGTGATGGTCTTTATGANGGCTTGGACTGGTTGGCAAGTACTCTGAANGGACTGGAAGCCTCANGTCGCCTCCCCTCAGGANGGACCTCATTGNTCTAAGTAGCAGGTCTGNCTGTAAGATTCTTNCGNTGACACTAACAATCTTTGCATCAAAGATGATCATGGGAACAAATATCNTGGGGNGGNAAGNCTTACATGGTCACACCTTACATTGCTCAGGCGATATGCTTTCNGGGGNCCGATTNTACTGGAGGCNAA] [+] EMBL C26582 [ TACTACCACACAGCTTGAAGAAGAAGAGGGAATTCGACGAGAAATAGTAGAAGCTTGGCGTTCGTGCGAGGAATTCTCGGTGGTTGATCGATCCGTGTTTCGCGGCGGATGGGGCAGGCGTTCCGCAAGCTGTTCGATGCCTTCTTCGGCACCAGCGAGATGAGGGTCGTGATGCTTGGGCTGGATGCCGCGGGCAAAACCACCATCCTGTACAAGCTGCACATCGGGGAGGTCCTTTCGACTGTTCCTACGATTGGGTTCAATGTTGAGAAAGTACAGTACAAGAACGTGATGTTTACAGTATGGGATGTCGGTGGCCAAGAGAAGTTG AGGCCTCTG TGGAGGCATTACTTCAATAATACGGATGGTTTGATCTATGTAGTTGATTCATTGGNTAGAGGAGAGAATCGGAAAAGCGAAA CGGNAGTTTCAGGCA ] [+] EMBL C26654 [ ACCACACAGCTTGAAGAAGAAGAGGGAATTCGACGAGAAATAGTAGAAGCTTGGCTNTCGTGCGAGGAATTCTCGGTGGTTGATCGATCCGTGTTTCGCGGCGGATGGGGCAGGCGTTCC CAAGCTGTTCGATGCCTTCTTCGGCACCAGCGAGATGAGGGTCGTGATGCTTGGGCTNGATGCCGCGGNAAAAACCACCATCCTGTACAAGCTGCACATCGGGGAGGTCCTTTCGACTNTTCCTACGATTGGGTTCAATGTTGAGAAAGTACAGTACAAGAACGTGATGTTTACAGTATGGGATGTCGGTGGCCAAGAGAAGTTG AGGCCTCTG TGGANGATTTACTTCAATAATACGGATGGTTTGATCTATGTAGTTGATTCATTGGATAGA ] consensusID : consensus_13593#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence [AATGATCCTTTGATGCTTAACAGTGTAATATTGGTATTTGCCCAATAAACAAGATATGAAAGGGNCAATGACGCCGTTGGAGGTGTGCGAAGGCCTTGGCCTCTATGATTTAAAGAATCGCATCTGGCATATCCAAGGCTCTTGTGCCCTCAAAGGTGATGGTCTTTATGAGGGCTTGGACTGGTTGGCAAGTACTCTGAAGGGACTGGAAGCCTCAGGTCGCCTCCCCTCAGGAGGGACCTCATTGTTCTAAGTAGCAGGTCTGCCTGTAAGATTCTTCCCGTTGACACTAACAATCTTTGCATCAAAGATGATCATGGGAACAAATTATCTTGGTGTGGAAGGCCTTACATGGTCACACCTTACATTGCTCAGGCGATATNTTCGCGGTGTCGATTCTACTGAAGGCAAAAGATGCATGAGAGCCTGACTACTTGAAACATTACCACTGCAGTTTTGTCATGGGTAGTAGTGTAGTAGTACCCATCGAGTCTTGTGAATTTCCTTGAATGTTACAGCTAACTATCGGATGCATTTGTTCACATGTGATGAGTGAAACGCATGTTGATGTAAAAAGTTTGTGTAAAGTTATGTTTGGCAAATGCAATTTGTATCAACAAAATCTGATCCCATGACACATTTCTCTGACGGTCCTACATCAGAACCGGAGACAAAAAAAAAA] [+] EMBL AU108595 [AATGATCCTTTGATGCTTAACAGTGTAATATTGGTATTTGCCCAATAAACAAGATATGAAAGGGNCAATGACGCCGTTGGAGGTGTGCGAAGGCCTTGGCCTCTATGATTTAAAGAATCGCATCTGGCATATCCAAGGCTCTTGTGCCCTCAAAGGTGATGGTCTTTATGAGGGCTTGGACTGGTTGGCAAGTACTCTGAAGGGACTGGAAGCCTCAGGTCGCCTCCCCTCAGGAGGGACCTCATTGTTCTAAGTAGCAGGTCTGCCTGTAAGATTCTTCCCGTTGACACTAACAATCTTTGCATCAAAGATGATCATGGGAACAAATTATCTTGGTGTGGAAGGCCTTACATGGTCACACCTTACATTGCTCAGGCGATATNTTCGCGGTGTCGATTCTACTGAAGGCAAAAGATGCATGAGAGCCTGACTACTTGAAACATTACCACTGCAGTTTTGTCATGGGTAGTAGTGTAGTAGTACCCATCGAGTCTTGTGAATTTCCTTGAATGTTACAGCTAACTATCGGATGCATTTGTTCACATGTGATGAGTGAAACGCATGTTGATGTAAAAAGTTTGTGTAAAGTTATGTTTGGCAAATGCAATTTGTATCAACAAAATCTGATCCCATGACACATTTCTCTGACGGTCCTACATCAGAACCGGAGACAAAAAAAAAA] consensusID : consensus_13593#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 678 fasta sequence [AATTGGGAAAAAGCGGAAAGGGGGAGGTTTCAGGGCAATCCGTTAAAGATCCCTTTGAGGCTTACCAGTGTAATATTGGTATTGGCCAATAACCAAGATATGAAAGGGGCAATGCCCTCGTNGGAGGTGTTCGAAGGCCTTGGCCTCTATGATTTAAAGAATCGCATGTGGAATATCCAAGGCTCTTGTGCCCTTAAAGGTGATGGTCTTTATGAGGGCTTGGACTGGCTGGCAAGTCCTATGAAGGGACTGGTAGTCTCAGGTGGCCTCCCCTCAGGAGGGGCCTCATTGTTTTAAGTAGCAGGTTTGCCTGTAAGATTTTTCCGTTGACTCTAACAATCTGTGCATCAAAGATGATTGTGGGAACAGAATATTTTGGTGTGGAAGGCCTTACATGGTCACTCCGTTCAGTGGTCGGGCCATTTGCTTCGCGGTGTCGATTATACTGAAGGCAAAAGATGCATGAGATCCTGTTTACTTGAAACATTACCATTGCAGTTTTGTCATGGGTAGTGGTGTAGTAGTACCCATCGAGTCTTGTGAATTTCCATGAATGTTACAGCTAGCTATGGGATGCATTTGTTCACATGTGGTGAGTGAAACGCATGTTGATGTAAAAAGTTTGTGTAAAGTTATGTTTGGCAAAAGCAGTTTGTTTCCCCAAAAAAAAAAAAAAAA] [-] EMBL CA762376 [AATTGGGAAAAAGCGGAAAGGGGGAGGTTTCAGGGCAATCCGTTAAAGATCCCTTTGAGGCTTACCAGTGTAATATTGGTATTGGCCAATAACCAAGATATGAAAGGGGCAATGCCCTCGTNGGAGGTGTTCGAAGGCCTTGGCCTCTATGATTTAAAGAATCGCATGTGGAATATCCAAGGCTCTTGTGCCCTTAAAGGTGATGGTCTTTATGAGGGCTTGGACTGGCTGGCAAGTCCTATGAAGGGACTGGTAGTCTCAGGTGGCCTCCCCTCAGGAGGGGCCTCATTGTTTTAAGTAGCAGGTTTGCCTGTAAGATTTTTCCGTTGACTCTAACAATCTGTGCATCAAAGATGATTGTGGGAACAGAATATTTTGGTGTGGAAGGCCTTACATGGTCACTCCGTTCAGTGGTCGGGCCATTTGCTTCGCGGTGTCGATTATACTGAAGGCAAAAGATGCATGAGATCCTGTTTACTTGAAACATTACCATTGCAGTTTTGTCATGGGTAGTGGTGTAGTAGTACCCATCGAGTCTTGTGAATTTCCATGAATGTTACAGCTAGCTATGGGATGCATTTGTTCACATGTGGTGAGTGAAACGCATGTTGATGTAAAAAGTTTGTGTAAAGTTATGTTTGGCAAAAGCAGTTTGTTTCCCCAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13593#0 CAAGTCCCTCAACAAACGAACGCTGCTTTTCGACGAAGAAAAGGAGGGTTCCTCGCTCTG 60 consensus_13593#2 ------------------------------------------------------------ consensus_13593#3 ------------------------------------------------------------ consensus_13593#1 ------------------------------------------------------------ consensus_13593#0 ACGCCTTGCGCAGTTGTACCGTACATTCGTACTACCACACAGCTTGAAGAAGAAGAGGGA 120 consensus_13593#2 ------------------------------------------------------------ consensus_13593#3 ------------------------------------------------------------ consensus_13593#1 ------------------------------------------------------------ consensus_13593#0 ATTCGACGAGAAATAGTAGAAGCTTGGCGTTCGTGCGAGGAATTCTCGGTGGTTGATCGA 180 consensus_13593#2 ------------------------------------------------------------ consensus_13593#3 ------------------------------------------------------------ consensus_13593#1 ------------------------------------------------------------ consensus_13593#0 TCCGTGTTTCGCGGCGGATGGGGCAGGCGTTCCGCAAGCTGTTCGATGCCTTCTTCGGCA 240 consensus_13593#2 ------------------------------------------------------------ consensus_13593#3 ------------------------------------------------------------ consensus_13593#1 ------------------------------------------------------------ consensus_13593#0 CCAGCGAGATGAGGGTCGTGATGCTTGGGCTGGATGCCGCGGGCAAAACCACCATCCTGT 300 consensus_13593#2 ------------------------------------------------------------ consensus_13593#3 ------------------------------------------------------------ consensus_13593#1 ------------------------------------------------------------ consensus_13593#0 ACAAGCTGCACATCGGGGAGGTCCTTTCGACTGTTCCTACGATTGGGTTCAATGTTGAGA 360 consensus_13593#2 ------------------------------------------------------------ consensus_13593#3 ------------------------------------------------------------ consensus_13593#1 ------------------------------------------------------------ consensus_13593#0 AAGTACAGTACAAGAACGTGATGTTTACAGTATGGGATGTCGGTGGCCAAGAGAAGTTGA 420 consensus_13593#2 ------------------------------------------------------------ consensus_13593#3 ------------------------------------------------------------ consensus_13593#1 ------------------------------------------------------------ consensus_13593#0 GGCCTCTGTGGAGGCATTACTTCAATAATACGGATGGTTTGGTATGTTTTGTTTCCTTTG 480 consensus_13593#2 ------------------------------------------------------------ consensus_13593#3 ------------------------------------------------------------ consensus_13593#1 ------------------------------------------------------------ consensus_13593#0 TGGTTATCTTTTTGGGAATACGTGAAAGATTTGTGCATCGTTGCATTAAAGAAGGAAAGA 540 consensus_13593#2 ------------------------------------------------------------ consensus_13593#3 ------------------------------------------------------------ consensus_13593#1 ------------------------------------------------------------ consensus_13593#0 AGTGGTTATTTGATTTTGACAGACTTGTGTAATGATATAGTATTATATAGCCATTCTGCA 600 consensus_13593#2 ------------------------------------------------------------ consensus_13593#3 ------------------------------------------------------------ consensus_13593#1 ------------------------------------------------------------ consensus_13593#0 TAGGTTATTGTGGTTGACTTTGAGACAAATATTTCTTAGTTTGACTTATTGGTTAAAGTT 660 consensus_13593#2 ------------------------------------------------------------ consensus_13593#3 ------------------------------------------------------------ consensus_13593#1 ------------------------------------------------------------ consensus_13593#0 GTATGGCATGTATGCAATTGTTTTATCCAAAGTATCCATAAGGCTGGTGAGGTTGCTAGA 720 consensus_13593#2 ------------------------------------------------------------ consensus_13593#3 ------------------------------------------------------------ consensus_13593#1 ------------------------------------------------------------ consensus_13593#0 TGATCCTTTGAACATTTTTAATTAAAAAATTAAATGCATACCAATATTGATACCGCAAAT 780 consensus_13593#2 ------------------------------------------------------------ consensus_13593#3 ------------------------------------------------------------ consensus_13593#1 ------------------------------------------------------------ consensus_13593#0 ATGTGTGTTTAAAATCTATGGTAATTCGATTTGAATTTATGTGGAGTTATAGAACTCATT 840 consensus_13593#2 ------------------------------------------------------------ consensus_13593#3 ------------------------------------------------------------ consensus_13593#1 ------------------------------------------------------------ consensus_13593#0 TATTTAAACAATTATGATAGTGAGATAACCCAAATGAGTGGTATAGAATTTCCCAGTTCT 900 consensus_13593#2 ------------------------------------------------------------ consensus_13593#3 ------------------------------------------------------------ consensus_13593#1 ------------------------------------------------------------ consensus_13593#0 CTTTTAATTAACATGAAAACTTACGGATCTAGAAGTACCCTGTGCTTGGCATACTATCTA 960 consensus_13593#2 ------------------------------------------------------------ consensus_13593#3 ------------------------------------------------------------ consensus_13593#1 ------------------------------------------------------------ consensus_13593#0 TTTTCATGTAATGGTATTGTAATATAATATAATCATGCTTAATTATCCAGTTAATGGATA 1020 consensus_13593#2 ------------------------------------------------------------ consensus_13593#3 ------------------------------------------------------------ consensus_13593#1 ---------------------------------CAACAAACGAACGCTGCTTTTCGACGA 27 consensus_13593#0 ATGTTGTCGAGTTTGTCAGATCTTTCACTGTATGAGATTATAGCA-ATGTTTCTACTAAT 1079 consensus_13593#2 ------------------------------------------------------------ consensus_13593#3 ------------------------------------------------------------ consensus_13593#1 AGAAAAGGAGGGTTCCTCGCTCTGACGCCTTGCGCAGTTGTACCGTACATTCGTACTACC 87 consensus_13593#0 TCAACACTTAATGAATTGCTCTTTTGTTGATACTGTAAATGATATCTTTGCTTGATTTGA 1139 consensus_13593#2 ------------------------------------------------------------ consensus_13593#3 ------------------------------------------------------------ consensus_13593#1 ACACAGCTTGAAGAAGAAGAGGGAATTCGACGAGAAATAGTAGAAGCTTGGCGTTCGTGC 147 consensus_13593#0 TTTGGTTTGATTTATTACAGCTGAACAGAGCCATCTTTCCAGATATAAGCTCATTCTGGA 1199 consensus_13593#2 ------------------------------------------------------------ consensus_13593#3 ------------------------------------------------------------ consensus_13593#1 GAGGAATTCTCGGTGGTTGATCGATCCG---TGTTTCGCGGCGGATGGGGCAGGCGTTCC 204 consensus_13593#0 TTATTTTGTGCTATATTACCTAATGAAGTTACTAATTAGCTAATGTTATGTCTATAATGT 1259 consensus_13593#2 ------------------------------------------------------------ consensus_13593#3 ------------------------------------------------------------ consensus_13593#1 GCAAGCTGTTCGATGCCTTCTTCGGCACCAGCGAGATGAGGGTCGTGATGCTTGGGCTGG 264 consensus_13593#0 AAACCATACTACTCTTCAGTTACTAATTAGATGATGCTCGTCAGTAAAACTTTATTCTAT 1319 consensus_13593#2 ------------------------------------------------------------ consensus_13593#3 ------------------------------------------------------------ consensus_13593#1 ATGCCGCGG-GCAAAACCACCATCCTGTACAAGCTGCACATCGGGGAGGTCCTTTCGACT 323 consensus_13593#0 TTTCTTGTTGATTTGTTTTCCTTGAGAGATCGGCGTGATACTGAAATTCGGATGTATTCA 1379 consensus_13593#2 ------------------------------------------------------------ consensus_13593#3 ------------------------------------------------------------ consensus_13593#1 GTTCCTACGATTGGGTTCAATGTTGAGAAAGTACAGTACAA--------GAACGTGATGT 375 consensus_13593#0 TGAGCATACCCAACTACATTTATAAATTGTAATAGCAACTTATTCCTATATGTTATTTTT 1439 consensus_13593#2 ------------------------------------------------------------ consensus_13593#3 ------------------------------------------------------------ consensus_13593#1 TTACAGTATGGGATGTCGGTGGCCAAGAGAAGTTGAGGCCTCTGTGGAGGCATTACTTCA 435 consensus_13593#0 GCACGTTCTGATTTGCAGATCTATGTAGTTGATTCATTGGATAGAGAGAGAATCGGAAAA 1499 consensus_13593#2 ------------------------------------------------------------ consensus_13593#3 -------------------------------------------AATTGGGAAAAAGCGGA 17 consensus_13593#1 ATA-ATACGGATGGTTTGATCTATGTAGTTGATTCATTGGATAGAGAGAGAATCGGAAAA 494 consensus_13593#0 GCGAAAGCGGAGTTTCAGGCAATCGTTAATGATCC-TTTGATGCTTAACAGTGTAATATT 1558 consensus_13593#2 ---------------------------AATGATCC-TTTGATGCTTAACAGTGTAATATT 32 consensus_13593#3 AAGGGGGAGGTTTCAGGGCAATCCGTTAAAGATCCCTTTGAGGCTTACCAGTGTAATATT 77 consensus_13593#1 GCGAAAGCGGAGTTTCAGGCAATCGTTAATGATCC-TTTGATGCTTAACAGTGTAATATT 553 ** ***** ***** ***** ************ consensus_13593#0 GGTATTTGCC-AATAAACAAGATATGAAAGGGGCAATGACGCCGTTGGAGGTGTGCGAAG 1617 consensus_13593#2 GGTATTTGCCCAATAAACAAGATATGAAAGGGNCAATGACGCCGTTGGAGGTGTGCGAAG 92 consensus_13593#3 GGTATTGGCC-AATAACCAAGATATGAAAGGGGCAATGCCCTCGTNGGAGGTGTTCGAAG 136 consensus_13593#1 GGTATTTGCC-AATAAACAAGATATGAAAGGGGCAATGACGCCGTTGGAGGTGTGCGAAG 612 ****** *** ***** *************** ***** * *** ******** ***** consensus_13593#0 GCCTTGGCCTCTATGATTTAAAGAATCGCATCTGGCATATCCAAGGCTCTTGTGCCCTCA 1677 consensus_13593#2 GCCTTGGCCTCTATGATTTAAAGAATCGCATCTGGCATATCCAAGGCTCTTGTGCCCTCA 152 consensus_13593#3 GCCTTGGCCTCTATGATTTAAAGAATCGCATGTGGAATATCCAAGGCTCTTGTGCCCTTA 196 consensus_13593#1 GCCTTGGCCTCTATGATTTAAAGAATCGCATCCGGCATATCCAAGGCTCTTGTGCCCTCA 672 ******************************* ** ********************** * consensus_13593#0 AAGGTGATGGTCTTTATGAGGGCTTGGACTGGTTGGCAAGTACTCTGAAGGGACTGGAAG 1737 consensus_13593#2 AAGGTGATGGTCTTTATGAGGGCTTGGACTGGTTGGCAAGTACTCTGAAGGGACTGGAAG 212 consensus_13593#3 AAGGTGATGGTCTTTATGAGGGCTTGGACTGGCTGGCAAGTCCTATGAAGGGACTGGTAG 256 consensus_13593#1 AAGGTGATGGTCTTTATGANGGCTTGGACTGGTTGGCAAGTACTCTGAANGGACTGGAAG 732 ******************* ************ ******** ** **** ******* ** consensus_13593#0 CCTCAGGTCGCCTCCCCTCAGGAGGGACCTCATTGTTCTAAGTAGCAGGTCTGCCTGTAA 1797 consensus_13593#2 CCTCAGGTCGCCTCCCCTCAGGAGGGACCTCATTGTTCTAAGTAGCAGGTCTGCCTGTAA 272 consensus_13593#3 TCTCAGGTGGCCTCCCCTCAGGAGGGGCCTCATTGTTTTAAGTAGCAGGTTTGCCTGTAA 316 consensus_13593#1 CCTCANGTCGCCTCCCCTCAGGANGGACCTCATTGNTCTAAGTAGCAGGTCTGNCTGTAA 792 **** ** ************** ** ******** * ************ ** ****** consensus_13593#0 GATTCTTCC-GTTGACACTAACAATCTTTGCATCAAAGATGATCATGGGAACAAATTATC 1856 consensus_13593#2 GATTCTTCCCGTTGACACTAACAATCTTTGCATCAAAGATGATCATGGGAACAAATTATC 332 consensus_13593#3 GATTTTTCC-GTTGACTCTAACAATCTGTGCATCAAAGATGATTGTGGGAACAGAATATT 375 consensus_13593#1 GATTCTTNC-GNTGACACTAACAATCTTTGCATCAAAGATGATCATGGGAACAAA-TATC 850 **** ** * * **** ********** *************** ******** * *** consensus_13593#0 TTGGTGTGGAAGGCCTTACATGGTCACACCTTACATTGCTCAGGCGATATGC-TTCGCGG 1915 consensus_13593#2 TTGGTGTGGAAGGCCTTACATGGTCACACCTTACATTGCTCAGGCGATATN--TTCGCGG 390 consensus_13593#3 TTGGTGTGGAAGGCCTTACATGGTCACTCCGTTCAGTGGTCGGGCCATTTGC-TTCGCGG 434 consensus_13593#1 NTGGGGNGGNAAGNCTTACATGGTCACACCTTACATTGCTCAGGCGATATGCTTTCNGGG 910 *** * ** * * ************* ** * ** ** ** *** ** * *** ** consensus_13593#0 TGTCGATTCTACTGAAGGCAAAAGATGCATGAGAGCCTGACTACTTGAAACATTACCACT 1975 consensus_13593#2 TGTCGATTCTACTGAAGGCAAAAGATGCATGAGAGCCTGACTACTTGAAACATTACCACT 450 consensus_13593#3 TGTCGATTATACTGAAGGCAAAAGATGCATGAGATCCTGTTTACTTGAAACATTACCATT 494 consensus_13593#1 GNCCGATTNTACTGGAGGCNAA-------------------------------------- 932 ***** ***** **** ** consensus_13593#0 GCAGTTTTGTCATGGGTAGTAGTGTAGTAGTACCCATCGAGTCTTGTGAATTTCCTTGAA 2035 consensus_13593#2 GCAGTTTTGTCATGGGTAGTAGTGTAGTAGTACCCATCGAGTCTTGTGAATTTCCTTGAA 510 consensus_13593#3 GCAGTTTTGTCATGGGTAGTGGTGTAGTAGTACCCATCGAGTCTTGTGAATTTCCATGAA 554 consensus_13593#1 ------------------------------------------------------------ consensus_13593#0 TGTTACAGCTAACTATCGGATGCATTTGTTCACATGTGATGAGTGAAACGCATGTTGATG 2095 consensus_13593#2 TGTTACAGCTAACTATCGGATGCATTTGTTCACATGTGATGAGTGAAACGCATGTTGATG 570 consensus_13593#3 TGTTACAGCTAGCTATGGGATGCATTTGTTCACATGTGGTGAGTGAAACGCATGTTGATG 614 consensus_13593#1 ------------------------------------------------------------ consensus_13593#0 TAAAAAGTTTGTGTAAAGTTATGTTTGGCAAATGCAATTTGTATCAACAAAATCTGATCC 2155 consensus_13593#2 TAAAAAGTTTGTGTAAAGTTATGTTTGGCAAATGCAATTTGTATCAACAAAATCTGATCC 630 consensus_13593#3 TAAAAAGTTTGTGTAAAGTTATGTTTGGCAAAAGCAGTTTGTTTCCCCAAAAAAAAA--- 671 consensus_13593#1 ------------------------------------------------------------ consensus_13593#0 CATGAAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGAGTACGTAGCGTATC 2209 consensus_13593#2 CATGACACATTTCTCTGACGGTCCTACATCA--GAACCGGAGACAAAAAAAAAA 682 consensus_13593#3 -AAAAAAA---------------------------------------------- 678 consensus_13593#1 ------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||