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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13595#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 862 fasta sequence
[TCTTTTTTTTAAAGATCCAAGGACACTATCAATTAAATTAATGTTCAGGTCCAAACCTGTACACGGGTAATATGATACAAAAGGAGTCAGGCCCATAATTATACATGTAAAAAACCTAGGTGGTGGTTATCATGTCTATTTCAAAGTTCTTTTTCAGCCTTCATTTCGTTCTTTTCCCCC-TG-CTTTATCAACACGAAATACAACCCGCCATGCCTATGCGATGGTGCCTATGTGCAACTTGCAACTCCATTGCATGATTGGGACCTTACTAAATTTGAAATACTGCACAATGGAAGGGAGCAAGAAATCAGGTAATGGGGTCAAAAGAATACCGCGAGACTATGAACAAAAGCCATTAGAAGCCTCTGTCAGTGATGGGATATCATCAAGAACGATATCGGCAGGATCTCCAATCCAAAGCCCATCCCTCCATCTGAACTTGATCCTCAGTTTCCCATTTGCATCAACGCCTACAACCTCACCTTTACTCTCATATGTCTCCTCCCCCCATCCCCAACGTGGGGTTACAAGGCCAGGTCGTATCCGTACTCTGTCCCCTAATCGGAATGGCCTCACCTTCTCCACTTCCCACCTTTTGCACAACCATTGTCTTTCACAGAAACAGAAGGCAACCCAAAGTTCACCATCCTCGGCCCGGTGGACTACCCCTATGCTATTATGGTTCACGTCACCCCACTGATATGTGGGGGTCGCAACACAATCCTTAACCTTTACCCAGTCCCCGACACAGACTTCTTCCTCTTCCTCCACCTTTTCAACCTCCGCTGGGTCTATCAACCAAGCTCTCGCACCAGCGGGTGTATGAATCCTAAGCTTCCCATCAGCATCAATAGATGAGATG]
[+] EMBL CB620783 [TCTTTTTTTTAAAGATCCAAGGACACTATCAATTAAATTAATGTTCAGGTCCAAACCTGTACACGGGTAATATGATACAAAAGGAGTCAGGCCCATAATTATACATGTAAAAAACCTAGGTGGTGGTTATCATGTCTATTTCAAAGTTCTTTTTCAGCCTTCATTTCGTTCTTTTCCCCC TG CTTTATCAACACGAAATACAACCCGCCATGCCTATGCGATGGTGCCTATGTGCAACTTGCAACTCCATTGCATGATTGGGACCTTACTAAATTTGAAATACTGCACAATGGAAGGGAGCAAGAAATCAGGTAATGGGGTCAAAAGAATACCGCGAGACTATGAACAAAAGCCATTAGAAGCCTCTGTCAGTGATGGGATATCATCAAGAACGATATCGGCAGGATCTCCAATCCAAAGCCCATCCCTCCATCTGAACTTGATCCTCAGTTTCCCATTTGCATCAACGCCTACAACCTCACCTTTACTCTCATATGTCTCCTCCCCCCATCCCCAACGTGGGGTTACAAGGCCAGGTCGTATCCGTACTCTGTCCCCTAATCGGAATGGCCTCACCTTCTCCACTTCCCACCTTTTGCACAACCATTGTCTTTCACAGAAACAGAAGGCAACCCAAAGTTCACCATCCTCGGCCCGGTGGACTACCCCTATGCTATTATGGTTCACGTCACCCCACTGATATGTGGGGGTCGCAACACAATCCTTAACCTTTACCCAGTCCCCGACACAGACTTCTTCCTCTTCCTCCACCTTTTCAACCTCCGCTGGGTCTATCAACCAAGCTCTCGCACCAGCGGGTGTATGAATCCTAAGCTTCCCATCAGCATCAATAGATGAGATG]
[-] EMBL AU069664 [ TTTTTAAAGATCCAAGGACACTATCAATTAAATTAATGTTCAGGTCCAAACCTGTACACGGGTAATATGATACAAAAGGAGTCAGGCCCATAATTATACATGTTAAAAACCTAGGTGGTGGTTATCATGTCTATTTCAAAGTTCTTTTTCAGCCTTCATTTCGTTCTTTTCCCCC TG CTTTATCAACACGAAATACAACCCGCCATGCCTATGCGATGGTGCCTATGTGCAACTTGCAACTCCATTGCATGATTGGGACCTTACTAAATTTGAAATACT ]
[-] EMBL AU181311 [ TTTTTAAAGATCCAAGGACACTATCAATTAAATTAATGTTCAGGTCCAAACCTGTACACGGGTAATATGATACAAAAGGAGTCAGGCCCATAATTATACATGTAAAAAACCTAGGTGGNGGTTATCATGTCTATTTCAAAGTTCTTTTTCAGCCTTCATTTCGTTCTTTTCCCCC TG CTTTATCAACACGAAATACAACCCGCCATGCCTATGCGATGGTGCCTATGTGCAACTTGCAACTCCATTGCATGATTGGGACCTTACTAAATTTGAAATACTGCACAATGGAAGGGAGCAAGAAATCAGGTAATGGGGTCAAAAGAATACCGCGAGACTATGAACAAAAGCCATTAGAAGCCTCTGTCAGTGATGGGATATCATCAAGAACGATATCGGCAGGATCTCCAATCCAAAGCCCATCCCTCCATCTGAACTTGAT ]
[+] EMBL CB620781 [ TCCAAGGACACTATCAATTAAATTAACGCTTAAGTCCAAACCTGTACACGGGTAATATGATACAAAAGGAGTCAGGCCCATAATTATACATGTAAAAAACCTAGGAGGTGGTTATCATGTCTATTTCAAAGATCTTTTTCAGCCTTCATTTCGTTCTTTTCCCCC TG CTTTATCAACACGAAATACAACCCGCCATGCCTATGCGATGGTGCCTATGTGCAACTTGCAACTCCATTGCATGATTGGGACCTTACTAAATTTGAAATACTGCACAATGGAAGGGAGCAAGAAATCAGGTAATGGGGTCAAAAGAATACCGCGAGACTATGAACAAAAGCCATTAGAAGCCTCTGTCAGTGATGGGATATCATCAAGAACGATATCGGCAGGATCTCCAATCCAAAGCCCATCCCTCCATCTGAACTTGATCCTCAGTTTCCCATTTGCATCAACGCCTACAACCTCACCTTTACTCTCATATGTCTCCTCCCCCCATCCCCAACGTGGGGTTACAAGGCCAGGTCGTATCCGTACTCTGTCCCCTAATCGGAATGGCCTCACCTTCTCCACTTCCCACCTTTTGCACAACCATTGTCTTTCACAGAAACAGAAGGCAACCCAAAGTTCACCATCCTCGGCCCGGTGGACTACCCCTATGCTATTATGGTTCACGTCACCCCACTGATATGTGGGGGTCGCAACACAATCCTTAACCTATACCCAGTCCCCGACACAGACTTCTTCCTCTTCCTC ]
[+] EMBL CB620865 [ AGGACACTATCAATTAAATTAATGTTCAGGTCCAAACCTGTACACGGGTAATATGATACAAAAGGAGTCAGGCCCATAATTATACATGTAAAAAACCTAGGTGGTGGTTATCATGTCTATTTCAAAGTTCTTTTTCAGCCTTCATTTCGTTCTTTTCCCCC TG CTTTATCAACACGAAATACAACCCGCCATGCCTATGCGATGGTGCCTATGTGCAACTTGCAACTCCATTGCATGATTGGGACCTTACTAAATTTGAAATACTGCACAATGGAAGGGAGCAAGAAATCAGGTAATGGGGTCAAAAGAATACCGCGAGACTATGAACAAAAGCCATTAGAAGCCTCTGTCAGTGATGGGATATCATCAAGAACGATATCGGCAGGATCTCCAATCCAAAGCCCATCCCTCCATCTGAACTTGATCCTCAGTTTCCCATTTGCATCAACGCCTACAACCTCACCTTTACTCTCATATGTCTCCTCCCCCCATCCCCAACGTGGGGTTACAAGGCCAGGTCGTATCCGTACTCTGTCCCCTAATCGGAATGGCCTCACCTTCTCCACTTCCCACCTTTTGCACAACCATTGTCTTTCACAGAAACAGAAGGCAACCCAAAGTTCACCATCCTCGGCCCGGTGGACTACCCCTATGCTATTATGGTTCACGTCACCCCACTGATATGTGGGGGTCGCAACACAATCCTTAACCTTTACCCAGTCCCCGACACAGACTTCTTCCTCTTCCTCCACCTTTTCAACCTCCGC ]
[+] EMBL CB664259 [ AGGACACTATCAATTAAATTAATGTTCAGGTCCAAACCTGTACACGGGTAATATGATACAAAAGGAGTCAGGCCCATAATTATACATGTAAAAAACCTAGGGGGGGGTTATCATGTCTATTTCAAAGTTCTTTTTCAGCCTTCATTTCGTTCTTTTCCCCC TG CTTTATCAACACGAAATACAACCCGCCATGCCTATGCGATGGTGCCTATGTGCAACTTGCAACTCCATTGCATGATTGGGACCTTACTAAATTTGAAATACTGCACAATGGAAGGGAGCAAAAAATCAGGTAATGGGGTCAAAAGAATACCGCGAGACTATGAACAAAAGCCATTAAAAGCCTCTGTCAGTGATGGGATATCATCAAGAACGATATCGGCAGGATCTCCAATCCAAAGCCCATCCCTCCATCTGAACTTGATCCTCAGTTTCCCATTTGCATCAACGCCTACAACCTCACCTTTACTCTCATATGTCTCCTCCCCCCATCCCCAACGTGGGGTTACAAGGCCAGGTCGTATCCGTACTCTGTCCCCTAATCGGAATGGCCTCACCTTCTCCACTTCCCACCTTTTGCACAACCATTGTCTTTCACAGAAACAGAAGGCAACCCAAAGTTCACCATCCTCGGCCCGGTGGATTACCCCTATGCTATTATGGTTCACGTCACCCCACTGATATGTGGGGGTCGCAACACAATCCTTAACCTTT ]
[-] EMBL AK060457 [ GGACACTATCAATTAAATTAATGTTCAGGTCCAAACCTGTACACGGGTAATATGATACAAAAGGAGTCAGGCCCATAATTATACATGTAAAAAACCTAGGTGGTGGTTATCATGTCTATTTCAAAGTTCTTTTTCAGCCTTCATTTCGTTCTTTTCCCCC TG CTTTATCAACACGAAATACAACCCGCCATGCCTATGCGATGGTGCCTATGTGCAACTTGCAACTCCATTGCATGATTGGGACCTTACTAAATTTGAAATACTGCACAATGGAAGGGAGCAAGAAATCAGGTAATGGGGTCAAAAGAATACCGCGAGACTATGAACAAAAGCCATTAGAAGCCTCTGTCAGTGATGGGATATCATCAAGAACGATATCGGCAGGATCTCCAATCCAAAGCCCATCCCTCCATCTGAACTTGATCCTCAGTTTCCCATTTGCATCAACGCCTACAACCTCACCTTTACTCTCATATGTCTCCTCCCCCCATCCCCAACGTGGGGTTACAAGGCCAGGTCGTATCCGTACTCTGTCCCCTAATCGGAATGGCCTCACCTTCTCCACTTCCCACCTTTTGCACAACCATTGTCTTTCACAGAAACAGAAGGCAACCCAAAGTTCACCATCCTCGGCCCGGTGGATTACC ]
[+] EMBL CB621003 [ GACACTATCAATTAAATCAATCTTTAGGGCCAAACCTGTACACGGGTAATATGATACAAAAGGAGTCAGGCCCATAATTATACATGTAAAAAACCTAGGGGGGGGTTATCATGTCTATTTCAAAGTTCTTTTTCAGCCTTCATTTCGTTCTTTTCCCCCTTG CTTTATCAACACGAAATACAACCCGCCATGCCTATGCGATGGTGCCTATGTGCAACTTGCAACTCCATTGCATGATTGGGACCTTACTAAATTTGAAATACTGCACAATGGAAGGGAGCAAGAAATCAGGTAATGGGGTCAAAAGAATACCGCGAGACTATGAACAAAAGCCATTAAAAGCCTCTGTCAGTGATGGGATATCATCAAGAACGATATCGGCAGGATCTCCAATCCAAAGCCCATCCCTCCATCTGAACTTGATCCTCAGTTTCCCATTTGCATCAACGCCTACAACCTCACCTTTACTCTCATATGTCTCCTCCCCCCATCCCCAACGTGGGGTTACAAGGCCAGGTCGTATCCGTACTCTGTCCCCTAATCGGAATGGCCTCACCTTCTCCACTTCCCACCTTTTGCACAACCATTGTCTTTCACAGAAACAGAAGGCAACCCAAAGTTCACCATCCTCGGCCCGGTGGACTACCCCTATGCTATTATGGTTCACGTCACCCCACTGATATGTGGGGGTCGCAACACAATCCTTAACCTTTACCCAGTCCCCGACACAGACTTCTTCCTCTTCCTCCACCTTTTCAACCTCCGCTGGGTCTATCAACCAAGCTC ]
[+] EMBL CB620895 [ ACACTATCAATTAAATTAATGCTTAGGTCCAAACCTGTACACGGGTAATATGATACAAAAGGAGTCAGGCCCATAATTATACATGTAAAAAACCTAGGTGGTGGTTATCATGTCTATTTCAAAGTTCTTTTTCAGCCTTCATTTCGTTCTTTTCCCCC TG CTTTATCAACACGAAATACAACCCGCCATGCCTATGCGATGGTGCCTATGTGCAACTTGCAACTCCATTGCATGATTGGGACCTTACTAAATTTGAAATACTGCACAATGGAAGGGAGCAAGAAATCAGGTAATGGGGTCAAAAGAATACCGCGAGACTATGAACAAAAGCCATTAAAAGCCTCTGTCAGTGATGGGATATCATCAAGAACGATATCGGCAGGATCTCCAATCCAAAGCCCATCCCTCCATCTGAACTTGATCCTCAGTTTCCCATTTGCATCAACGCCTACAACCTCACCTTTACTCTCATATGTCTCCTCCCCCCATCCCCAACGTGGGGTTACAAGGCCAGGTCGTATCCGTACTCTGTCCCCTAATCGGAATGGCCTCACCTTCTCCACTTCCCACCTTTTGCACAACCATTGTCTTTCACAGAAACAGAAGGCAACCCAAAGTTCACCATCCTCGGCCCGGTGGACTACCCCTATGCTATTATGGTTCACGTCACCCCACTGATATGTGGGGGTCGCAACACAATCCTTAACCTTTACCCAGTCCCCGACACAGACTTCTTCCTCTTCCTCCACCTTTTCAACCTCCG ]
[+] EMBL CB620866 [ ATCAATTAAATTAGTCTTCAGGGACAAACCTGTACACGGGTAATATGATACAAAAGGAGACACGCCCATAATTATACATGAAAAAAACCTAGGAGGCGGTTATCATGTCTATTTCAAAATTCTTTTTCAGCCTTCATTTCTTTCTTTTCCCCCATG CTTTATCAACACGAAATACAACCCGCCATGCCTATGCGATGGTGCCTATGTGCAACTTGCAACTCCATTGCATGATTGGGACCTTACTAAATTTGAAATACTGCACAATGGAAGGGAGCAAGAAATCAGGTAATGGGGTCAAAATAATACCGCGAGACTATGAACAAAAGCCATTAAAAGCCTCTGTCAGTGATGGGATATCATCAATAACGATATCGGCAGGATCTCCAATCCAAAGCCCATCCCTCCATCTGAACTTGATCCTCAGTTTCCCATTTGCATCAACGCCTACAACCTCACCTTTACTCTCATATGTCTCCTCCCCCCATCCCCAACGTGGGGTTACAAGGCCAGGTCGTATCCGTACTCTGTCCCCTAATCGGAATGGCCTCACCTTCTCCACTTCCCACCTTTTGCACAACCATTGTCTTTCACAGAAACAGAAGGCAACCCAAAGTTCACCATCCTCGGCCCGGTGGACTACCCCTATGCTATTATGGTTCACGTCACCCCACTGATATGTGGGGGTCGCAACACAATCCTTAACCTTTACCCAGACCCCGACACAGACTTCTTCCTCTTCCTCCACCTTATC ]
[+] EMBL CB620968 [ ATACAAAAGGAGTCAGGCCCATAATTATACATGTAAAAACCCCAGGGGGTGGTTATCATGTCTATTTCAAAGTTCTTTTTCAGCCTTCATTTCGTTCTTTTCCCCC TG CTTTATCAACACGAAATACAACCCGCCATGCCTATGCGATGGTGCCTATGTGCAACTTGCAACTCCATTGCATGATTGGGACCTTACTAAATTTGAAATACTGCACAATGGAAGGGAGCAAGAAATCAGGTAATGGGGTCAAAAGAATACCGCGAGACTATGAACAAAAGCCATTAGAAGCCTCTGTCAGTGATGGGATATCATCAAGAACGATATCGGCAGGATCTCCAATCCAAAGCCCATCCCTCCATCTGAACTTGATCCTCAGTTTCCCATTTGCATCAACGCCTACAACCTCACCTTTACTCTCATATGTCTCCTCCCCCCATCCCCAACGTGGGGTTACAAGGCCAGGTCGTATCCGTACTCTGTCCCCTAATCGGAATGGCCTCACCTTCTCCACTTCCCACCTTTTGCACAACCATTGTCTTTCACAGAAACAGAAGGCAACCCAAAGTTCACCATCCTCGGCCCGGTGGACTACCCCTATGCTATTATGGTTCACGTCACCCCACTGATATGTGGGGGTCGCAACACAATCCT ]
[+] EMBL CB620822 [ ACAAAAGGAGTCAGGCCCATAATTATACATGTAAAAAACCTAGGAGGCGGTTATCATGTCTATTTCAAAATTCTTTTTCAGCCTTCATTTCGTGCTTTTCCCCC TGTATTTATCAACACGAAATACAACCCGCCATGCCTATGCGATGGTGCCTATGTGCAACTTGCAACTCCATTGCATGATTGGGACCTTACTAAATTTGAAATACTGCCCAATGGAAGGGAGCAAGAAATCAGGTAATGGGGTCAAAAGAATACCGCGAGACTATGAACAAAAGCCATTAAAAGCCTCTGGCAGTGATGGGATATCATCAATAACGATATCGGCAGGATCTCCAATCCAAAGCCCATCCCTCCATCTGAACTTGATCCTCAGTTTCCCATTTGCATCAACGCCTACAACCTCACCTTTACTCTCATATGTCTCCTCCCCCCATCCCCAAAATGGGGTTACAAGGCCAGGTCGTATCCGTA ]
consensusID : consensus_13595#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 130 fasta sequence
[ACTGAAGAGTAGAAAGGCCTGACTCCTTTTGTATCATATTACCCGTGTACAGGTTTGGACCTGAACATTAATTTAATTGATAGTGTCCTTGGATCTTTACTCTTCAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF330788 [ACTGAAGAGTAGAAAGGCCTGACTCCTTTTGTATCATATTACCCGTGTACAGGTTTGGACCTGAACATTAATTTAATTGATAGTGTCCTTGGATCTTTACTCTTCAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13595#0 TCTTTTTTTTAAAGATCCAAGGACACTATCAATTAAATTAATGTTCAGGTCCAAACCTGT 60
consensus_13595#1 ------------------------------------------------------------
consensus_13595#0 ACACGGGTAATATGATACAAAAGGAGTCAGGCCCATAATTATACATGTAAAAAACCTAGG 120
consensus_13595#1 ------------------------------------------------------------
consensus_13595#0 TGGTGGTTATCATGTCTATTTCAAAGTTCTTTTTCAGCCTTCATTTCGTTCTTTTCCCCC 180
consensus_13595#1 ------------------------------------------------------------
consensus_13595#0 TGCTTTATCAACACGAAATACAACCCG-CCATGCCTATGCGATGGTGCCTATGTGCAACT 239
consensus_13595#1 ------ACTGAAGAGTAGAAAGGCCTGACTCCTTTTGTATCATATTACCCGTGTACAGGT 54
* * * * * ** * * * * ** * ** *** ** *
consensus_13595#0 TGCAACTCCATTGCATGATTGGGACCTTACTAAATTTGAAATACTGCACAATGGAAGGGA 299
consensus_13595#1 TTGGACCTGAACAT-TAATTTAATTGATAGTGTCCTTGGATCTTTACTCTTCAAAAAAAA 113
* ** * * *** ** * *** * * * * ** *
consensus_13595#0 GCAAGAAATCAGGTAATGGGGTCAAAAGAATACCGCGAGACTATGAACAAAAGCCATTAG 359
consensus_13595#1 AAAAAAAAAAAAAAAAA------------------------------------------- 130
** *** * **
consensus_13595#0 AAGCCTCTGTCAGTGATGGGATATCATCAAGAACGATATCGGCAGGATCTCCAATCCAAA 419
consensus_13595#1 ------------------------------------------------------------
consensus_13595#0 GCCCATCCCTCCATCTGAACTTGATCCTCAGTTTCCCATTTGCATCAACGCCTACAACCT 479
consensus_13595#1 ------------------------------------------------------------
consensus_13595#0 CACCTTTACTCTCATATGTCTCCTCCCCCCATCCCCAACGTGGGGTTACAAGGCCAGGTC 539
consensus_13595#1 ------------------------------------------------------------
consensus_13595#0 GTATCCGTACTCTGTCCCCTAATCGGAATGGCCTCACCTTCTCCACTTCCCACCTTTTGC 599
consensus_13595#1 ------------------------------------------------------------
consensus_13595#0 ACAACCATTGTCTTTCACAGAAACAGAAGGCAACCCAAAGTTCACCATCCTCGGCCCGGT 659
consensus_13595#1 ------------------------------------------------------------
consensus_13595#0 GGACTACCCCTATGCTATTATGGTTCACGTCACCCCACTGATATGTGGGGGTCGCAACAC 719
consensus_13595#1 ------------------------------------------------------------
consensus_13595#0 AATCCTTAACCTTTACCCAGTCCCCGACACAGACTTCTTCCTCTTCCTCCACCTTTTCAA 779
consensus_13595#1 ------------------------------------------------------------
consensus_13595#0 CCTCCGCTGGGTCTATCAACCAAGCTCTCGCACCAGCGGGTGTATGAATCCTAAGCTTCC 839
consensus_13595#1 ------------------------------------------------------------
consensus_13595#0 CATCAGCATCAATAGATGAGATG 862
consensus_13595#1 -----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||