These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13639#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1203 fasta sequence [TCCGAACGCTCTAGATCTTATCAAGTGGCGTCGGCGGCGATGTGCGAGGAGGCGACGCGGAGCAGG-GTGCTGGTGGTCGGCGCCACCGGGCGGCTCGGGGGATGCCTCGTGCGCGCCAGCCTCGCCGCCGGCCACCCCACCTTCGCGCTCGTCCGCCCCCACCACCTCGCTGTCCCCGACTCCGCCCCACTCACGTCGCTCGCCGGCGCCACGGTCGTGAAGGGATCGCTCGAAGATTACCCGAGCCTGCTGGAAGCGGTGCGGCAGGTGGATGTCGTCATCTGCGCCGTGCCCACGAAGCAAGCGCTCGAGCAGAAGC-TTCTGATTCGGGCTATTAA-GGATGCT--GGG-TG-CG-TGAA---GA-GA-TTTA--TTCC-AGC--GGAATA-TGGAC-TTGA-TCCCAC-AAAGGTTCAAA--TTTG-TGGC-ATGGACC-ATGGCTTCTATGAGAAGAAAATTGAAATACGCCATTTAATAGAGAGCGAATGCATTCCTCACACCTACATCTGCTGCAACTTCTTGATGCGTTATTTGCTTCCGTCACTTGTTCAGCCAGGACTCGATGCTCCTCCAAGAGATGAAGTTAAGATATTTGGTGATGGAAACACTAGAGGAGTTTTTGTTGAAGAGACTGATGTTGCTAAATTCACGATCTGCACCATAGATGATCCCAGGACATTAAACAATACGCTGTATCTGAGACCCTCGGGAAATGTCTACTCAATGAACAAATTGGTTGACCTCTGGGAGAAAAAAATAAATAAATTCCTGAACAAGATATATATCACAGAAGAACAACTCCTGAAAAACATTGAAGATGCACCATTGCCCTTGAAGATGGATTTGATATTTATATATTCAACATTTATTAAGGGTGACCAAACATATTTTGAAATTGACTCGAGAAAGGAAGGAACTCAATTGTATCCTCATGTAAATTATACCACAGTGGATGGTTATTTAGATAAATTGGTTTAGAATATTAAATATTTGTTTTTTCCTGTACTAGTACCATTCCTACCTCTATTAGTTATATTACCTTTCATCTCTAGCCTACCTCAACTTGCTAGGGACTTAAGGTTATTATTCTTGTATCTTGCCCATAAACAATACCCTTCTGTTAAATGGTATTTTGAAAGAATTGCAAAATGACAATCAAGTCTTAGTTTGTATGTTCAATTAATCTCATTCAATAATATGATCTTTTTTGGGTGTTCCCTG] [+] EMBL AK106021 [TCCGAACGCTCTAGATCTTATCAAGTGGCGTCGGCGGCGATGTGCGAGGAGGCGACGCGGAGCAGG GTGCTGGTGGTCGGCGCCACCGGGCGGCTCGGGGGATGCCTCGTGCGCGCCAGCCTCGCCGCCGGCCACCCCACCTTCGCGCTCGTCCGCCCCCACCACCTCGCTGTCCCCGACTCCGCCCCACTCACGTCGCTCGCCGGCGCCACGGTCGTGAAGGGATCGCTCGAAGATTACCCGAGCCTGCTGGAAGCGGTGCGGCAGGTGGATGTCGTCATCTGCGCCGTGCCCACGAAGCAAGCGCTCGAGCAGAAGC TTCTGATTCGGGCTATTAA GGATGCT GGG TG CG TGAA GA GA TTTA TTCC AGC GGAATA TGGAC TTGA TCCCAC AAAGGTTCAAA TTTG TGGC ATGGACC ATGGCTTCTATGAGAAGAAAATTGAAATACGCCATTTAATAGAGAGCGAATGCATTCCTCACACCTACATCTGCTGCAACTTCTTGATGCGTTATTTGCTTCCGTCACTTGTTCAGCCAGGACTCGATGCTCCTCCAAGAGATGAAGTTAAGATATTTGGTGATGGAAACACTAGAGGAGTTTTTGTTGAAGAGACTGATGTTGCTAAATTCACGATCTGCACCATAGATGATCCCAGGACATTAAACAATACGCTGTATCTGAGACCCTCGGGAAATGTCTACTCAATGAACAAATTGGTTGACCTCTGGGAGAAAAAAATAAATAAATTCCTGAACAAGATATATATCACAGAAGAACAACTCCTGAAAAACATTGAAGATGCACCATTGCCCTTGAAGATGGATTTGATATTTATATATTCAACATTTATTAAGGGTGACCAAACATATTTTGAAATTGACTCGAGAAAGGAAGGAACTCAATTGTATCCTCATGTAAATTATACCACAGTGGATGGTTATTTAGATAAATTGGTTTAGAATATTAAATATTTGTTTTTTCCTGTACTAGTACCATTCCTACCTCTATTAGTTATATTACCTTTCATCTCTAGCCTACCTCAACTTGCTAGGGACTTAAGGTTATTATTCTTGTATCTTGCCCATAAACAATACCCTTCTGTTAAATGGTATTTTGAAAGAATT ] [+] EMBL AK068080 [ CGAACGCTCTAGATCTTATCAAGTGGCGTCGGCGGCGATGTGCGAGGAGGCGACGCGGAGCAGG GTGCTGGTGGTCGGCGCCACCGGGCGGCTCGGGGGATGCCTCGTGCGCGCCAGCCTCGCCGCCGGCCACCCCACCTTCGCGCTCGTCCGCCCCCACCACCTCGCTGTCCCCGACTCCGCCCCACTCACGTCGCTCGCCGGCGCCACGGTCGTGAAGGGATCGCTCGAAGATTACCCGAGCCTGCTGGAAGCGGTGCGGCAGGTGGATGTCGTCATCTGCGCCGTGCCCACGAAGCAAGCGCTCGAGCAGAAGC TTCTGATTCGGGCTATTAA GGATGCT GGG TG CG TGAA GA GA TTTA TTCC AGC GGAATA TGGAC TTGA TCCCAC AAAGGTTCAAA TTTG TGGC ATGGACC ATGGCTTCTATGAGAAGAAAATTGAAATACGCCATTTAATAGAGAGCGAATGCATTCCTCACACCTACATCTGCTGCAACTTCTTGATGCGTTATTTGCTTCCGTCACTTGTTCAGCCAGGACTCGATGCTCCTCCAAGAGATGAAGTTAAGATATTTGGTGATGGAAACACTAGAGGAGTTTTTGTTGAAGAGACTGATGTTGCTAAATTCACGATCTGCACCATAGATGATCCCAGGACATTAAACAATACGCTGTATCTGAGACCCTCGGGAAATGTCTACTCAATGAACAAATTGGTTGACCTCTGGGAGAAAAAAATAAATAAATTCCTGGACAAGATATATATCACAGAAGAACAACTCCTGAAAAACATTGAAGATGCACCATTGCCCTTGAAGATGGATTTGATATTTATATATTCAACATTTATTAAGGGTGACCAAACATATTTTGAAATTGACTCGAGAAAGGAAGGAACTCAATTGTATCCTCATGTAAATTATACCACAGTGGATGGTTATTTAGATAAATTGGTTTAGAATATTAAATATTTGTTTTTTCCTGTACTAGTACCATTCCTACCTCTATTAGTTATATTACCTTTCATCTCTAGCCTACCTCAACTTGCTAGGGACTTAAGGTTATTATTCTTGTATCTTGCCCATAAACAATACCCTTCTGTTAAATGGTATTTTGAAAGAATTGCAAAATGACAATCAAGTCTTAGT ] [+] EMBL AK104529 [ CTCTAGATCTTATCAAGTGGCGTCGGCGGCGATGTGCGAGGAGGCGACGCGGAGCAGG GTGCTGGTGGTCGGCGCCACCGGGCGGCTCGGGGGATGCCTCGTGCGCGCCAGCCTCGCCGCCGGCCACCCCACCTTCGCGCTCGTCCGCCCCCACCACCTCGCTGTCCCCGACTCCGCCCCACTCACGTCGCTCGCCGGCGCCACGGTCGTGAAGGGATCGCTCGAAGATTACCCGAGCCTGCTGGAAGCGGTGCGGCAGGTGGATGTCGTCATCTGCGCCGTGCCCACGAAGCAAGCGCTCGAGCAGAAGC TTCTGATTCGGGCTATTAA GGATGCT GGG TG CG TGAA GA GA TTTA TTCC AGC GGAATA TGGAC TTGA TCCCAC AAAGGTTCAAA TTTG TGGC ATGGACC ATGGCTTCTATGAGAAGAAAATTGAAATACGCCATTTAATAGAGAGCGAATGCATTCCTCACACCTACATCTGCTGCAACTTCTTGATGCGTTATTTGCTTCCGTCACTTGTTCAGCCAGGACTCGATGCTCCTCCAAGAGATGAAGTTAAGATATTTGGTGATGGAAACACTAGAGGAGTTTTTGTTGAAGAGACTGATGTTGCTAAATTCACGATCTGCACCATAGATGATCCCAGGACATTAAACAATACGCTGTATCTGAGACCCTCGGGAAATGTCTACTCAATGAACAAATTGGTTGACCTCTGGGAGAAAAAAATAAATAAATTCCTGAACAAGATATATATCACAGAAGAACAACTCCTGAAAAACATTGAAGATGCACCATTGCCCTTGAAGATGGATTTGATATTTATATATTCAACATTTATTAAGGGTGACCAAACATATTTTGAAATTGACTCGAGAAAGGAAGGAACTCAATTGTATCCTCATGTAAATTATACCACAGTGGATGGTTATTTAGATAAATTGGTTTAGAATATTAAATATTTGTTTTTTCCTGTACTAGTACCATTCCTACCTCTATTAGTTATATTACCTTTCATCTCTAGCCTACCTCAACTTGCTAGGGACTTAAGGTTATTATTCTTGTATCTTGCCCATAAACAATACCCTTCTGTTAAATGGTATTTTG ] [+] EMBL AU164170 [ CTCTAGATCTTATCAAGTGGCGTCGGCGGCGATGTGCGAGGAGGCGACGCGGA CAGGNGTGCTGGTGGTCGGCGCCACCGGGNGCATCGGGGGATGCCTCGTGCGCGCCA CCTCGCCGCCGG CACCCCACCTTCGCGCTCGTCCGCCCCCACCACCTCGCTGTCCCCGACTCCGCCCCACTCACGTCGCTCGCCGGCGCCACGGTCGTGAAGGGATCGCTCGAAGATTACCCGAGCCTGCTGGAA CGGTGCGGCAGGTGGATGTCGTCATCTGCGCCGTGCCCACGAAGCAAGCGCTCGAGCAGAAGC TTCTGATTCGGGCTATTAA GGATGCT GGG TG CG TGAA GA GA TTTA TTCC AGC GGAATA TGGAC TTGA TCCCAC AAAGGTTCAAA TTTGTTGGC ATGGACC ATGGCTTCTATGAGAAGAAAATTGAAATACGCC ] [+] EMBL AU064287 [ CTCTAGATCTTATCAAGTGGCGTCGGCGGCGATGTGCGAGGAGGCGACGCGGA NAGG GTGCTGGTGGTCGGCGCCACCGGGCGGCTCGGGGGATGCCTCGTGCGCGCCAG CTCGCCGCCGGCCACCCCACCTTCGCGCTCGTCCGCCCCCACCACCTCGCTGTCCCCGACTCCGCCCCACTCACGTCGCTCGCCGGCGCCACGGTCGTGAAGGGATCGCTCGAAGATTACCCGAGCCTGCTGGAAGCGGTGCGGCAGGTGGATGTCGTCATCTGCGCCGTGCCCACGAAGCAAGCGCTCGAGCAGAAGCTTTCTGATTCGGGCTATTAAGGGATGCTTGGGGTTGCCGTTGAAAAGGAGGATTTTANTTTCCAAGCCGGGAATATTGGACTTTGATTCCCACAAAAGGTTCAAAATTTTT TGGCAATNGACCAATGGgntttct ] [+] EMBL OSC103461 [ ccgcccacGCGTC CGGCGATGTGCGAGGAGGCGACGCGGA NAGG GTGCTGGTGGTCGGCGCCACCGGGCGGCTCGGGGGATGCCTCGTGCGCGCCA CCTCGCCGCCGGCCACCCCACCTTCGCGCTCGTCCGCCCCCACCACCTCGCTGTCCCCGACTCCGCCCCACTCACGTCGCTCGNCGGCGCCACGGTCGTNAAGGGATCGCTCGAAGATTACCCGAGCCTGCTGGAAGCGGTGCGGCAGG ] [+] EMBL CF325852 [ GTGCGAGGAGGCGACGCGGAGCAGG GTGCTGGTGGTCGGCGCCACCGGGCGGCTCGGGGGATGCCTCGTGCGCGCCAGCCTCGCCGCCGGCCACCCCACCTTCGCGCTCGTCCGCCCCCACCACCTCGCTGTCCCCGACTCCGCCCCACTCACGTCGCTCGCCGGCGCCACGGTCGTGAAGGGATCGCTCGAAGATTACCCGAGCCTGCTGGAAGCGGTGCGGCAGGTGGATGTCGTCATCTGCGCCGTGCCCACGAAGCAAGCGCTCGAGCAGAAGC TTCTGATTCGGGCTATTAA GGATGCT GGG TG CG TGAA GA GA TTTA TTCC AGC GGAATA TGGAC TTGA TCCCAC AAAGGTTCAAA TTTG TGGC ATGGACC ATGGCTTCTATGAGAAGAAAATTGAAATACGCCATTTAATAGAGAGCGAATGCATTCCTCACACCTACATCTGCTGCA ] [+] EMBL OS38082 [ CTCAATGAACGAATTGGTTGACCTCTNGGAGAAAANNATAAATAAATTCCTGAACAAGATATATATCACAGAAGAA NACTCCTGAAAAACATTGAAGATGCACCATTGCCCTTGAAGATGGATTTGATATTTATATATTCAACATTTATTAAGGGTGACCAAACATATTTTGAAATTGACTCGAGAAAGGAAGG ACTCAATTGTATCCTCATGTAAATTATACCACAGTTGATTGTTATTTAGATAAAATGG CTAGAAgta ] [+] EMBL BI805185 [ GCACC TTGCCCTTGAAGATGGATTTGATATTTATATATTCAACATTTATTAAGGGTGACC AACATATTTTGAAATTGACTCGAGAAAGGAAGGAACTCAATTGTATCCTCATGTAAATTATACCCCAGTGGATGGTTATTTAGATAAATTGGTTTAGAATATTAAATATTTGTTTTTTCCTGTACTAGTACCATTCCTACCTCTATTAGTTATATTACCTGTCATCTCTAGCCTACCTCAACTTGCTAGGGACTTAAGGTTATTATTCTTGTATCTTGCCCATAAAC ATACCCTTCTGTTAAATGGTATTTTGAAAGAATTGC AAATGAC ATCAAaa ] [+] EMBL AU092057 [ AAGATGGATTTGATATTTCTATATTCAACATTTATTAAGGGTGACCACACATATTTTGANNTTGACTCGAGANAGGACGGAACTNAATTGTNTCCTCATGTNAATTATACCACAGTGGATGGTTATTTNGATAAATTGGTTTAGAATATTAAATATTTGTTTTTTCCTGTANTAGTACCATTCCTACCTCTATTAGTTATATTACCTTTCATCTCTAGCCTACCTCAACTTGNTAGGGACTTAAGGTTATTATTCTTGTATCTTGCCNATAAACAATACCCTTCTGTTAAATGGTATTTTGAAAGAATTGCAAAAa ] [+] EMBL AU165475 [ TTGACTCGAGAAAGGAAGGAACTCAATTGTATCCTCATGTAAATTATACCACAGTGGATGGTTATTTAGATAAATTGGTTTAGAATATTAAATATTTGTTTTTTCCTGTACTAGTACCATTCCTACCTCTATTAGTTATATTACCTTTCATCTCTAGCCTACCTCAACTTGCTAGGGACTTAAGGTTATTATTCTTGTATCTTGCCCATAAACAATACCCTTCTGTTAAATGGTATTTTGAAAGAATTGCAAAATGACANTCAAGTCTTAGTTTGTATGTTCAATTAATCTCATTCAATAATATGATCTTTTTTGGGTGTTCCCTG] consensusID : consensus_13639#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 373 fasta sequence [AAACATTGGNAGATGCACCATTNCCCTTTGAAGNTGGATTTGATATTTATATATTCAACATTTATTAAGGGTGNCCAAACATATTTTGAAATTGACTCGAGAAAGGAAGGAACTCAATTGTANCCTCATGTAAATTATNCCACAGTGGATGGTTATTTAGATAAATTGGTTTAGAATATTAAATATTTGTTTTTTCCTGTACTAGTACCATTCCTACCTCTATTAGTTATATTACCTTTCATCTCTAGCCTACCTCAACTTGCTAGGGACTTAAGGTTATTATTCTTGTATCTTGCCCATAAACAATACCCTTCTGTTAAATGGTATTTTGAAAGAATTGCAAAATGACAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C99550 [AAACATTGGNAGATGCACCATTNCCCTTTGAAGNTGGATTTGATATTTATATATTCAACATTTATTAAGGGTGNCCAAACATATTTTGAAATTGACTCGAGAAAGGAAGGAACTCAATTGTANCCTCATGTAAATTATNCCACAGTGGATGGTTATTTAGATAAATTGGTTTAGAATATTAAATATTTGTTTTTTCCTGTACTAGTACCATTCCTACCTCTATTAGTTATATTACCTTTCATCTCTAGCCTACCTCAACTTGCTAGGGACTTAAGGTTATTATTCTTGTATCTTGCCCATAAACAATACCCTTCTGTTAAATGGTATTTTGAAAGAATTGCAAAATGACAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU094680 [ aacCATTTATNAAGGGTGACCAAACATATTTTGAAATTGACTCGAGAAAGGAAGGAACTCAATTGTATCCTCATGTAAATTATACCACAGTGGATGGTTATTTAGATAAATTGGTTTAGAATATTAAATATTTGTTTTTTCCTGTACTAGTACCATTCCTACCTCTATTAGTTATATTACCTTTCATCTCTAGCCTACCTCAACTTGCTAGGGACTTAAGGTTATTATTCTTGTATCTTGCCCATAAACAATACCCTTCTGTTAAATGGTATTTTGAAAGAATTGCAAAATGACAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13639#0 TCCGAACGCTCTAGATCTTATCAAGTGGCGTCGGCGGCGATGTGCGAGGAGGCGACGCGG 60 consensus_13639#1 ------------------------------------------------------------ consensus_13639#0 AGCAGGGTGCTGGTGGTCGGCGCCACCGGGCGGCTCGGGGGATGCCTCGTGCGCGCCAGC 120 consensus_13639#1 ------------------------------------------------------------ consensus_13639#0 CTCGCCGCCGGCCACCCCACCTTCGCGCTCGTCCGCCCCCACCACCTCGCTGTCCCCGAC 180 consensus_13639#1 ------------------------------------------------------------ consensus_13639#0 TCCGCCCCACTCACGTCGCTCGCCGGCGCCACGGTCGTGAAGGGATCGCTCGAAGATTAC 240 consensus_13639#1 ------------------------------------------------------------ consensus_13639#0 CCGAGCCTGCTGGAAGCGGTGCGGCAGGTGGATGTCGTCATCTGCGCCGTGCCCACGAAG 300 consensus_13639#1 ------------------------------------------------------------ consensus_13639#0 CAAGCGCTCGAGCAGAAGCTTCTGATTCGGGCTATTAAGGATGCTGGGTGCGTGAAGAGA 360 consensus_13639#1 ------------------------------------------------------------ consensus_13639#0 TTTATTCCAGCGGAATATGGACTTGATCCCACAAAGGTTCAAATTTGTGGCATGGACCAT 420 consensus_13639#1 ------------------------------------------------------------ consensus_13639#0 GGCTTCTATGAGAAGAAAATTGAAATACGCCATTTAATAGAGAGCGAATGCATTCCTCAC 480 consensus_13639#1 ------------------------------------------------------------ consensus_13639#0 ACCTACATCTGCTGCAACTTCTTGATGCGTTATTTGCTTCCGTCACTTGTTCAGCCAGGA 540 consensus_13639#1 ------------------------------------------------------------ consensus_13639#0 CTCGATGCTCCTCCAAGAGATGAAGTTAAGATATTTGGTGATGGAAACACTAGAGGAGTT 600 consensus_13639#1 ------------------------------------------------------------ consensus_13639#0 TTTGTTGAAGAGACTGATGTTGCTAAATTCACGATCTGCACCATAGATGATCCCAGGACA 660 consensus_13639#1 ------------------------------------------------------------ consensus_13639#0 TTAAACAATACGCTGTATCTGAGACCCTCGGGAAATGTCTACTCAATGAACAAATTGGTT 720 consensus_13639#1 ------------------------------------------------------------ consensus_13639#0 GACCTCTGGGAGAAAAAAATAAATAAATTCCTGAACAAGATATATATCACAGAAGAACAA 780 consensus_13639#1 ------------------------------------------------------------ consensus_13639#0 CTCCTGAAAAACATTG-AAGATGCACCATTGCCCTT-GAAGATGGATTTGATATTTATAT 838 consensus_13639#1 --------AAACATTGGNAGATGCACCATTNCCCTTTGAAGNTGGATTTGATATTTATAT 52 ******** ************ ***** **** ****************** consensus_13639#0 ATTCAACATTTATTAAGGGTGACCAAACATATTTTGAAATTGACTCGAGAAAGGAAGGAA 898 consensus_13639#1 ATTCAACATTTATTAAGGGTGNCCAAACATATTTTGAAATTGACTCGAGAAAGGAAGGAA 112 ********************* ************************************** consensus_13639#0 CTCAATTGTATCCTCATGTAAATTATACCACAGTGGATGGTTATTTAGATAAATTGGTTT 958 consensus_13639#1 CTCAATTGTANCCTCATGTAAATTATNCCACAGTGGATGGTTATTTAGATAAATTGGTTT 172 ********** *************** ********************************* consensus_13639#0 AGAATATTAAATATTTGTTTTTTCCTGTACTAGTACCATTCCTACCTCTATTAGTTATAT 1018 consensus_13639#1 AGAATATTAAATATTTGTTTTTTCCTGTACTAGTACCATTCCTACCTCTATTAGTTATAT 232 ************************************************************ consensus_13639#0 TACCTTTCATCTCTAGCCTACCTCAACTTGCTAGGGACTTAAGGTTATTATTCTTGTATC 1078 consensus_13639#1 TACCTTTCATCTCTAGCCTACCTCAACTTGCTAGGGACTTAAGGTTATTATTCTTGTATC 292 ************************************************************ consensus_13639#0 TTGCCCATAAACAATACCCTTCTGTTAAATGGTATTTTGAAAGAATTGCAAAATGACAAT 1138 consensus_13639#1 TTGCCCATAAACAATACCCTTCTGTTAAATGGTATTTTGAAAGAATTGCAAAATGACAAA 352 *********************************************************** consensus_13639#0 CAAGTCTTAGTTTGTATGTTCAATTAATCTCATTCAATAATATGATCTTTTTTGGGTGTT 1198 consensus_13639#1 AAAAAAAAAAAAAAAAAAAAA--------------------------------------- 373 ** * * consensus_13639#0 CCCTG 1203 consensus_13639#1 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||