These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13647#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1910 fasta sequence [AGGGTAACCCACAGCTTAGCTAGCAAGCAGCAGCAAGCCAACATAGTAGCTAGCACGTACAAATGATCGCCATGACTCCTCTTGGACTACTGCTAGTGCTTCTCGTCCTCTGTAGCTCCATTCTTGTTGCCCATGGAGGAGACGCTGCAGCCGGCGCCTATATGGTCATAGCAACCAGCACCATGAAACCGAAAACTTTCTGCTCCGGCCACAAGGTTGCTCCAGGGGACGTGCCGTCGCCGAACAGCACTTGGGCACCGTTGCATCACCTGTATGGGCCATGCTCGCCGGCGCCGTCGTCGGCCAACAGCACCGCCGCCGACGTCGCCGCTTCCATGGCCGACATGGTCGACGACGACCAACGCCGCGCGGACTACATCCAAAAGAGGCTCACCGGCGCCACCGACGACAAGCAGCCGATGGCCTTTTCGAGCAGAACCTCGCAATACGAGAAGAACGGCCAGTACGCCACTAATGGTGGCTTAGGCAGTGTGCCTCACCTCAAAAGTTTATCAACGACGGCGACGACGAATTCGGCGCCGGATGGCACGTCGGCGGTGACCCAGACGGTGATAATCGACTCCGGCAGCGACGTTTCATGGGTGCAATGCAAGCCATGCCCCTTGCCGATGTGCCACCGGCAACGGGACCCCCTGTTCGACCCGGCCATGTCGACCACGTACGCCGCCGTCCCCTGCACCTCCGCCGCCTGCGCGCAGCTCGGCCCCTACCGCCGCGGCTGCTCCGCCAACGCGCAGTGCCAGTTCGGCATCAACTACGGCGACGGGTCGACGGCGACCGGGACGTACAGCTTCGACGACCTCACGCTGGGCCCCTACGACGTCATCAGGGGCTTCCGCTTCGGCTGTGCGCATGCCGATAGGGGGAGTGCGTTCGACTACGACGTCGCCGGGTCACTGGCGCTCGGCGGCGGCTCGCAGTCGCTGGTGCAGCAGACGGCGACGCGGTACGGCAGGGTCTTCTCCTACTGCCTCCCGCCGACGGCGAGCTCCCTCGGCTTCCTCGTTCTCGGCGTGCCGCCGGAACGCGCCCAGCTCATCCCGAGCTTCGTCTCCACGCCACTGCTGAGCAGCAGCATGGCGCCCACGTTCTACAGGGTGCTCCTCCGCGCCATCATCGTGGCGGGGCGCCCACTCGCCGTGCCACCGGCCGTGTTTTCCGCCAGCTCGGTCATCGACTCCTCCACGATCATCTCGCGCCTGCCGCCGACGGCGTACCAGGCGCTGCGCGCGGCGTTCAGGAGCGCCATGACCATGTACCGGGCGGCGCCGCCGGTGTCCATCCTCGACACCTGCTACGACTTCACCGGCGTCCGCAGCATCACCCTGCCCAGCATCGCCCTCGTCTTCGACGGCGGCGCCACCGTCAACCTCGACGCCGCCGGGATCCTGTTAGGCAGCTGCCTCGCCTTCGCGCCCACAGCCAGCGACCGCATGCCCGGCTTCATCGGCAACGTGCAGCAGAAGACGCTGGAGGTGGTGTACGACGTTCCCGCCAAGGCCATGCGATTCAGGACCGCCG-CCTGCTAAGTGCTAATTCAAATTTGCTTGCTTG-CCAAACTAGCGTATTGTTAGCTTATTATTCGAATATAAGCTAGCTAGTTGATGAAATAATTAGTCAAAGTGATTGTTGTTTATGTTTTGATGCCATGTTTATCCTACATGGCGTACTAGTAGAGCATCTATCTCTAT-GGAAAGGGATTAAAGTAGCTAGCTTAATTGCAGCATTGTCTGCTAAAGTTTAGGCTAGCTACTAAAGCTCTTTTATTTATCTTGTCTGCAATAATTTGTTATCTTGATGTGATTTCGGTCGTGTGAGATTGTAATATCGAGTTATGCATCTCCATCTTGCATGTCAAGTGATGTACTACTTTTTCCATATCTAAAAAA] [+] EMBL AK104685 [AGGGTAACCCACAGCTTAGCTAGCAAGCAGCAGCAAGCCAACATAGTAGCTAGCACGTACAAATGATCGCCATGACTCCTCTTGGACTACTGCTAGTGCTTCTCGTCCTCTGTAGCTCCATTCTTGTTGCCCATGGAGGAGACGCTGCAGCCGGCGCCTATATGGTCATAGCAACCAGCACCATGAAACCGAAAACTTTCTGCTCCGGCCACAAGGTTGCTCCAGGGGACGTGCCGTCGCCGAACAGCACTTGGGCACCGTTGCATCACCTGTATGGGCCATGCTCGCCGGCGCCGTCGTCGGCCAACAGCACCGCCGCCGACGTCGCCGCTTCCATGGCCGACATGGTCGACGACGACCAACGCCGCGCGGACTACATCCAAAAGAGGCTCACCGGCGCCACCGACGACAAGCAGCCGATGGCCTTTTCGAGCAGAACCTCGCAATACGAGAAGAACGGCCAGTACGCCACTAATGGTGGCTTAGGCAGTGTGCCTCACCTCAAAAGTTTATCAACGACGGCGACGACGAATTCGGCGCCGGATGGCACGTCGGCGGTGACCCAGACGGTGATAATCGACTCCGGCAGCGACGTTTCATGGGTGCAATGCAAGCCATGCCCCTTGCCGATGTGCCACCGGCAACGGGACCCCCTGTTCGACCCGGCCATGTCGACCACGTACGCCGCCGTCCCCTGCACCTCCGCCGCCTGCGCGCAGCTCGGCCCCTACCGCCGCGGCTGCTCCGCCAACGCGCAGTGCCAGTTCGGCATCAACTACGGCGACGGGTCGACGGCGACCGGGACGTACAGCTTCGACGACCTCACGCTGGGCCCCTACGACGTCATCAGGGGCTTCCGCTTCGGCTGTGCGCATGCCGATAGGGGGAGTGCGTTCGACTACGACGTCGCCGGGTCACTGGCGCTCGGCGGCGGCTCGCAGTCGCTGGTGCAGCAGACGGCGACGCGGTACGGCAGGGTCTTCTCCTACTGCCTCCCGCCGACGGCGAGCTCCCTCGGCTTCCTCGTTCTCGGCGTGCCGCCGGAACGCGCCCAGCTCATCCCGAGCTTCGTCTCCACGCCACTGCTGAGCAGCAGCATGGCGCCCACGTTCTACAGGGTGCTCCTCCGCGCCATCATCGTGGCGGGGCGCCCACTCGCCGTGCCACCGGCCGTGTTTTCCGCCAGCTCGGTCATCGACTCCTCCACGATCATCTCGCGCCTGCCGCCGACGGCGTACCAGGCGCTGCGCGCGGCGTTCAGGAGCGCCATGACCATGTACCGGGCGGCGCCGCCGGTGTCCATCCTCGACACCTGCTACGACTTCACCGGCGTCCGCAGCATCACCCTGCCCAGCATCGCCCTCGTCTTCGACGGCGGCGCCACCGTCAACCTCGACGCCGCCGGGATCCTGTTAGGCAGCTGCCTCGCCTTCGCGCCCACAGCCAGCGACCGCATGCCCGGCTTCATCGGCAACGTGCAGCAGAAGACGCTGGAGGTGGTGTACGACGTTCCCGCCAAGGCCATGCGATTCAGGACCGCCG CCTGCTAAGTGCTAATTCAAATTTGCTTGCTTG CCAAACTAGCGTATTGTTAGCTTATTATTCGAATATAAGCTAGCTAGTTGATGAAATAATTAGTCAAAGTGATTGTTGTTTATGTTTTGATGCCATGTTTATCCTACATGGCGTACTAGTAGAGCATCTATCTCTAT GGAAAGGGATTAAAGTAGCTAGCTTAATTGCAGCATTGTCTGCTAAAGTTTAGGCTAGCTACTAAAGCTCTTTTATTTATCTTGTCTGCAATAATTTGTTATCTTGATGTGATTTCGGTCGTGTGAGATTGTAATATCGGGTTATGCATCTCCAT ] [+] EMBL AK066409 [ CCACAGCTTAGCTAGCAAGCAGCAGCAAGCCAACATAGTAGCTAGCACGTACAAATGATCGCCATGACTCCTCTTGGACTACTGCTAGTGCTTCTCGTCCTCTGTAGCTCCATTCTTGTTGCCCATGGAGGAGACGCTGCAGCCGGCGCCTATATGGTCATAGCAACCAGCACCATGAAACCGAAAACTTTCTGCTCCGGCCACAAGGTTGCTCCAGGGGACGTGCCGTCGCCGAACAGCACTTGGGCACCGTTGCATCACCTGTATGGGCCATGCTCGCCGGCGCCGTCGTCGGCCAACAGCACCGCCGCCGACGTCGCCGCTTCCATGGCCGACATGGTCGACGACGACCAACGCCGCGCGGACTACATCCAAAAGAGGCTCACCGGCGCCACCGACGACAAGCAGCCGATGGCCTTTTCGAGCAGAACCTCGCAATACGAGAAGAACGGCCAGTACGCCACTAATGGTGGCTTAGGCAGTGTGCCTCACCTCAAAAGTTTATCAACGACGGCGACGACGAATTCGGCGCCGGATGGCACGTCGGCGGTGACCCAGACGGTGATAATCGACTCCGGCAGCGACGTTTCATGGGTGCAATGCAAGCCATGCCCCTTGCCGATGTGCCACCGGCAACGGGACCCCCTGTTCGACCCGGCCATGTCGACCACGTACGCCGCCGTCCCCTGCACCTCCGCCGCCTGCGCGCAGCTCGGCCCCTACCGCCGCGGCTGCTCCGCCAACGCGCAGTGCCAGTTCGGCATCAACTACGGCGACGGGTCGACGGCGACCGGGACGTACAGCTTCGACGACCTCACGCTGGGCCCCTACGACGTCATCAGGGGCTTCCGCTTCGGCTGTGCGCATGCCGATAGGGGGAGTGCGTTCGACTACGACGTCGCCGGGTCACTGGCGCTCGGCGGCGGCTCGCAGTCGCTGGTGCAGCAGACGGCGACGCGGTACGGCAGGGTCTTCTCCTACTGCCTCCCGCCGACGGCGAGCTCCCTCGGCTTCCTCGTTCTCGGCGTGCCGCCGGAACGCGCCCAGCTCATCCCGAGCTTCGTCTCCACGCCACTGCTGAGCAGCAGCATGGCGCCCACGTTCTACAGGGTGCTCCTCCGCGCCATCATCGTGGCGGGGCGCCCACTCGCCGTGCCACCGGCCGTGTTTTCCGCCAGCTCGGTCATCGACTCCTCCACGATCATCTCGCGCCTGCCGCCGACGGCGTACCAGGCGCTGCGCGCGGCGTTCAGGAGCGCCATGACCATGTACCGGGCGGCGCCGCCGGTGTCCATCCTCGACACCTGCTACGACTTCACCGGCGTCCGCAGCATCACCCTGCCCAGCATCGCCCTCGTCTTCGACGGCGGCGCCACCGTCAACCTCGACGCCGCCGGGATCCTGTTAGGCAGCTGCCTCGCCTTCGCGCCCACAGCCAGCGACCGCATGCCCGGCTTCATCGGCAACGTGCAGCAGAAGACGCTGGAGGTGGTGTACGACGTTCCCGCCAAGGCCATGCGATTCAGGACCGCCG CCTGCTAAGTGCTAATTCAAATTTGCTTGCTTG CCAAACTAGCGTATTGTTAGCTTATTATTCGAATATAAGCTAGCTAGTTGATGAAATAATTAGTCAAAGTGATTGTTGTTTATGTTTTGATGCCATGTTTATCCTACATGGCGTACTAGTAGAGCATCTATCTCTAT GGAAAGGGATTAAAGTAGCTAGCTTAATTGCAGCATTGTCTGCTAAAGTTTAGGCTAGCTACTAAAGCTCTTTTATTTATCTTGTCTGCAATAATTTGTTATCTTGATGTGATTTCGGTCGTGTGAGATTGTAATATCGAGTTATGCATCTCCATCTTGCATGTCAAGTGATGTACT ] [+] EMBL AU162268 [ GCTAGCAAGCAGCAGCAAGCCAACATAGTAGCTAGCACGTACAAATGATCGCCATGACTCCTCTTGGACTACTGCTAGTGCTTCTCGTCCTCTGTAGCTCCATTCTTGTTGCCCATGGAGGAGACGCTGCAGCCGGCGCCTATATGGTCATAGCAACCAGCACCATGAAACCGAAAACTTTCTGCTCCGGCCACAAGGTTGCTCCAGGGGACGTGCCGTCGCCGAACAGCACTTGGGCACCGTTGCATCACCTGTATGGGCCATGCTCGCCGGCGCCGTCGTCGGCCAACAGCACCGCCGCCGACGTCGCCGCTTCCATGGCCGACATGGTCGACGACGACCAACGCCGCGCGGACTACATCCAAAAGAGGCTCACCGGCGCCACCGACGACAAGC ] [+] EMBL OSS10731A [ GCTAGCAAGCAGCAGCAAGCCAACATAGTAGCTAGCACGTACAAATGATCGCCATGACTCCTCTTGGNCTACTGCTAGTGCTTCTCGTCCTCTGTAGCTCCATTCTTGTTGCCCATGGAGGAGACGCTGCAGCCGGCGCCTATATGGTCATAGCAACCATCACCATNAANCCGANAACTTTCTGCTCCGGCCACAAGGTTGCTNCAGGGGACGTGCCGTCGNCGAACAGCACTTGGGCACCGTTGCA ] [+] EMBL CB653657 [ AGCAAGCAGCAGCAAGCCAACATAGTAGCTAGCACGTACAAATGATCGCCATGACTCCTCTTGGACTACTGCTAGTGCTTCTCGTCCTCTGTAGCTCCATTCTTGTTGCCCATGGAGGAGACGCTGCAGCCGGCGCCTATATGGTCATAGCAACCAGCACCATGAAACCGAAAACTTTCTGCTCCGGCCACAAGGTTGCTCCAGGGGACGTGCCGTCGCCAAACAGCACTTGGGCACCGTTGCATCACCTGTATGGGCCATGCTCGCCGGCGCCGTCGTCGGCCAACAGCACCGCCGCCGACGTCGCCGCTTCCATGGCCGACATGGTCGACGACGACCAACGCCGCGCGGACTACATCCAAAAGAGGCTCACCGGCGCCACCGACGACAAGCAGCCGATGGCCTTTTCGAGCAGAACCTCGCAATACGAGAAGAACGGCCAGTACGCCACTAATGGTGGCTTAGGCAGTGTGCCTCACCTCAAAAGTTTATCAACGACGGCGACGACGAATTCGGCGCCGGATGGCACGTCGGCGGTGACCCAGACGGTGATAATCGACTCCGGCAGCGACGTTTCATGGGTGCAATGCAAGCCATGCCCCTTGCCGATGTGCCACCGGCAACGGGACCCCCTGTTCGACCCGGCCATGTCGACCACGTACGCCGCCGTCCCCTGCACCTCCGCCGCCTGCGCGCAGCTCGGCCCCTACCG ] [-] EMBL CB653658 [ GGGGGAGTGCGTTCGACTACGACGTCGCCGGGTCACTGGCGCTCGGCGGCGGCTCGCAGTCGCTGGTGCAGCAGACGGCGACGCGGTACGGCAGGGTCTTCTCCTACTGCCTCCCGCCGACGGCGAGCTCCCTCGGCTTCCTCGTTCTCGGCGTGCCGCCGGAACGCGCCCAGCTCATCCCGAGCTTCGTCTCCACGCCACTGCTGAGCAGCAGCATGGCGCCCACGTTCTACAGGGTGCTCCTCCGCGCCATCATCGTGGCGGGGCGCCCACTCGCCGTGCCACCGGCCGTGTTTTCCGCCAGCTCGGTCATCGACTCCTCCACGATCATCTCGCGCCTGCCGCCGACGGCGTACCAGGCGCTGCGCGCGGCGTTCAGGAGCGCCATGACCATGTACCGGGCGGCGCCGCCGGTGTCCATCCTCGACACCTGCTACGACTTCACCGGCGTCCGCAGCATCACCCTGCCCAGCATCGCCCTCGTCTTCGACGGCGGCGCCACCGTCAACCTCGACGCCGCCGGGATCCTGTTAGGCAGCTGCCTCGCCTTCGCGCCCACAGCCAGCGACCGCATGCCCGGCTTCATCGGCAACGTGCAGCAGAAGACGCTGGAGGTGGTGTACGACGTTCCCGCCAAGGCCATGCGATTCAGGACCGCCG CCTGCTAAGTGCTAATTCAAATTTGCTTGCTTG CCAAACTAGCGTATTGTTAGCTTATTATTCGAATATAAGCTAGCTAGTGGATGAAATAATTAGTCAAAGTGATTGTTGTTT ] [+] EMBL AU030068 [ cgCGACGCCGCCGGGATCCTGTTAGGCAGCTGCCTCGCCTTCGCGCCCACAGCCAGCGACCGCATGCCCGGCTTCATCGGCAACGTGCAGCAGAAGACGCTGGAGGTGGTGTACGACGTTCCCGCCAAGGCCATGCGATTCAGGACCGCCG CCTGCTAAGTGCTAATTCAAATTTGCTTGCTTG CCAAACTAGCGTATTGTTAGCTTATTATTCGAATATAAGCTAGCTAGTTGATGAAATAATTAGTCAAAGTGATTGTTGTTTATGTTTTGATGCCATGTTTATCCTACATGGCGTACTAGTAGAGCATCTATCTCTAT GGAAAGGGATTAAAGTAGCTAGCTTAATTGCAGCATTGTCTGCTAAAGTTTAGGCTAGCTACTAAAGCTCTTTTATTTATCTTGTCTGCAATAATTTGTTATCTTGATGTGATTTCGGTCGTGTGAGATTGTAATATCGAGTTATGCATCTCCAaaaa ] [+] EMBL AU030067 [ GGGATCCTGTTAGGCAGCTGCCTCGCCTTCGCGCCCACAGCCAGCGACCGCATGCCCGGCTTCATCGGCAACGTGCAGCAGAAGACGCTGGAGGTGGTGTACGACGTTCCCGCCAAGGCCATGCGATTCAGGACCGCCG CCTGCTAAGTGCTAATTCAAATTTGCTTGCTTG CCAAACTAGCGTATTGTTAGCTTATTATTCGAATATAAGCTAGCTAGTTGATGAAATAATTAGTCAAAGTGATTGTTGTTTATGTTTTGATGCCATGTTTATCCTACATGGCGTACTAGTAGAGCATCTATCTCTATGGGAANGGGATTAAAGTAGCTAGCTTAATTGCAGCATTGTCTGCT AAGTTTAGGCTAGCTACTAAAGCn ] [+] EMBL AU032552 [ GGAGGTGGTGTACGACGTTCCCGCCAAGGCCATGCGATTCAGGACCGCCGNCCTGCTAAGTGCTAATTCAAATTTGCTTGCTTGACCAAACTAGCGTATTGTTAGCTTATTATTCGAATATAAGCTAGCTAGTTGATGAAATAATTAGTCAAAGTGATTGTTGTTTATGTTTTGATGCCATGTTTATCCTACATGGCGTACTAGTAGAGCATCTATCTCTAT GGAAAGGGATTAAAGTAGCTAGCTTAATTGCAGCATTGTCTGCTAAAGTTTAGGCTAGCTACTAAAGCTCTTTTATTTATCTTGTCTGCAATAATTTGTTATCTTGATGTGATTTCGGTCGTGTGAGATTGTAATATCGAGTTATGCATCTCCATCTTGCATGTCAAGTGATGTACTACTTTTTCCATATCTAAAAAA] consensusID : consensus_13647#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1113 fasta sequence [CCAACGGCGCGACGGCGACCGGGACGTATAGCTCCGACGACCTCACACTGGGCCCCTACGACGTCGTCAGGGGCTTCCTCTTCGGCTGCGCGCACGCCGACCAGGGAAGCACCTTCAGCTACGACGTCGCCGGAACCCTGGCTCTCGGCGGCGGCTCACAGTCTTTCGTGCAGCAGACGGCGAGTCAGTACAGCAGGGTGTTCTCGTACTGCGTCCCGCCGTCGACGAGCTCCTTCGGGTTCATCATGTTCGGCGTGCCGCCGCAGCGCGCCGCGCTCGTCCCGACCTTCGTCTCCACGCCGTTGCTGAGCAGCAGCACCATGTCGCCGACGTTCTACAGGGTGCTCCTCCGCTCCATCATCGTGGCGGGACGCCCGCTCCCCGTGCCGCCCACTGTCTTCTCCGCCAGCTCTGTGATCGACTCCGCCACCGTCATCTCGCGGATTCCGCCGACGGCGTACCAGGCGCTGCGCGCGGCGTTTAGGAGCGCGATGACCATGTACCGGCCGGCGCCGCCGGTGTCCATCCTCGACACGTGCTACGACTTTTCTGGCGTCCGCAGCATCACCCTGCCCAGCATCGCCCTGGTGTTCGACGGCGGGGCCACCGTCAACCTCGACGCGGCGGGGATCCTGCTCCAAGGCTGCCTCGCCTTCGCGCCCACCGCCAGCGACCGCATGCCAGGGTTCATCGGTAACGTTCAGCAGCGCACGCTCGAGGTGGTGTACGACGTCCCCGGCAAGGCCATTCGATTCCGGAGCGCCGCCTGCTAAATTAATTTGCTTGCTTGCCAAACTAGCTTGGTTTATTAATTAGCTTGGTTGATGAAATAATTAGTCAATTTAATCGCTGTTTATCTTCTCATGACATGTTTATCCTACAGTACTAGTAGAGCATCTATGATCTCTATGGAAAGGGATTAAAGTAGCTGGCTTGCAGCATGCATTGTCTGCTAAAGTTTAGGCTAGCTAGCAAAGCTCTTTTGTTTATGTTGTCTGCAATAATTAGTTAATTATCTTGATGTCATTTGTGCTCGTGTGAGATTGTAATATCGAGTTATGTCCATCTTATCAAGTCATGTACTACTTTTCCCATATCTATAGCCTTTTTACA] [+] EMBL AK061513 [CCAACGGCGCGACGGCGACCGGGACGTATAGCTCCGACGACCTCACACTGGGCCCCTACGACGTCGTCAGGGGCTTCCTCTTCGGCTGCGCGCACGCCGACCAGGGAAGCACCTTCAGCTACGACGTCGCCGGAACCCTGGCTCTCGGCGGCGGCTCACAGTCTTTCGTGCAGCAGACGGCGAGTCAGTACAGCAGGGTGTTCTCGTACTGCGTCCCGCCGTCGACGAGCTCCTTCGGGTTCATCATGTTCGGCGTGCCGCCGCAGCGCGCCGCGCTCGTCCCGACCTTCGTCTCCACGCCGTTGCTGAGCAGCAGCACCATGTCGCCGACGTTCTACAGGGTGCTCCTCCGCTCCATCATCGTGGCGGGACGCCCGCTCCCCGTGCCGCCCACTGTCTTCTCCGCCAGCTCTGTGATCGACTCCGCCACCGTCATCTCGCGGATTCCGCCGACGGCGTACCAGGCGCTGCGCGCGGCGTTTAGGAGCGCGATGACCATGTACCGGCCGGCGCCGCCGGTGTCCATCCTCGACACGTGCTACGACTTTTCTGGCGTCCGCAGCATCACCCTGCCCAGCATCGCCCTGGTGTTCGACGGCGGGGCCACCGTCAACCTCGACGCGGCGGGGATCCTGCTCCAAGGCTGCCTCGCCTTCGCGCCCACCGCCAGCGACCGCATGCCAGGGTTCATCGGTAACGTTCAGCAGCGCACGCTCGAGGTGGTGTACGACGTCCCCGGCAAGGCCATTCGATTCCGGAGCGCCGCCTGCTAAATTAATTTGCTTGCTTGCCAAACTAGCTTGGTTTATTAATTAGCTTGGTTGATGAAATAATTAGTCAATTTAATCGCTGTTTATCTTCTCATGACATGTTTATCCTACAGTACTAGTAGAGCATCTATGATCTCTATGGAAAGGGATTAAAGTAGCTGGCTTGCAGCATGCATTGTCTGCTAAAGTTTAGGCTAGCTAGCAAAGCTCTTTTGTTTATGTTGTCTGCAATAATTAGTTAATTATCTTGATGTCATTTGTGCTCGTGTGAGATTGTAATATCGAGTTATGTCCATCTTATCAAGTCATGTACTACTTTTCCCATATCTATAGCCTTTTTACA] consensusID : consensus_13647#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 637 fasta sequence [ACCGGCGTCCGCAGCATCACCCTTCCCAGCATCGCCCTCGTCTTCGACATGGGCGCCACCGTCAACCTCGACGCGTCCGGGATCCTCCTCGGCAGCTGCCTCGCCTTCGCGCCAACCGCCAGCGACCGCATGCCAGGGTTCATCGGCAACGTGCAGCAGCGCACGCTGGAGGTGGTGTACGACGTCCCCGGCAAGGCCATGCGATTCCGGAGCGCCGCCTGCTAATTAATTTGCTTCTAATTATCTGCCTCTATAATTGCTTGCTTGCCAATTAAACTAGCTTAGTTTATTAGCTTACTGGAATATAAGCTAGCTAGCTAGTTGATGAAATAAATTTAGTCAAATTAAGGAGTATCTACCAGTGATTAAGCTGAACCTACCCATCACTGTTTATCTTTTTGAATCTATGTTTATCCTACAGTATTAGAGCATCTCTATGAGAGGGATTAAAGTAGTTAGCTTGCATTGTCTGCTAAAGTTATGCTAGCTGGCTATCAAAGCTCTTTGTCTGTAATAATTAGTTATCTTGATGTGATATATTTGTGATCGTGTGAGATTGTAATGCAGTCATGTACTGCGTCCATCTATTGTTTGTCAAGGGACTGATTTTTCCAAACCTTACCTTTATGGCTTTAAT] [+] EMBL CA765197 [ACCGGCGTCCGCAGCATCACCCTTCCCAGCATCGCCCTCGTCTTCGACATGGGCGCCACCGTCAACCTCGACGCGTCCGGGATCCTCCTCGGCAGCTGCCTCGCCTTCGCGCCAACCGCCAGCGACCGCATGCCAGGGTTCATCGGCAACGTGCAGCAGCGCACGCTGGAGGTGGTGTACGACGTCCCCGGCAAGGCCATGCGATTCCGGAGCGCCGCCTGCTAATTAATTTGCTTCTAATTATCTGCCTCTATAATTGCTTGCTTGCCAATTAAACTAGCTTAGTTTATTAGCTTACTGGAATATAAGCTAGCTAGCTAGTTGATGAAATAAATTTAGTCAAATTAAGGAGTATCTACCAGTGATTAAGCTGAACCTACCCATCACTGTTTATCTTTTTGAATCTATGTTTATCCTACAGTATTAGAGCATCTCTATGAGAGGGATTAAAGTAGTTAGCTTGCATTGTCTGCTAAAGTTATGCTAGCTGGCTATCAAAGCTCTTTGTCTGTAATAATTAGTTATCTTGATGTGATATATTTGTGATCGTGTGAGATTGTAATGCAGTCATGTACTGCGTCCATCTATTGTTTGTCAAGGGACTGATTTTTCCAAACCTTACCTTTATGGCTTTAAT] consensusID : consensus_13647#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 541 fasta sequence [CCCAGCTATCGCCCTCGTCTTGCGACGGCGGCGCCACCGTCAACCTCGACGCCGCCGGGATCCTGTTAGGCAGCTGCCTCGCCTTCGCGCCCACAGCCAGCGACCGCATGCCCGGCTTCATCGGCAACGTGCAGCCAGAAGACGCCTGGAGGTGGTGTACGACGTT-CCCGCCAAGGCCATGCGATT-CAGGACCGCCCGCCTGCTAAGTGCTAATTCAAATTTGCTTGCTTGCC-AACTAGCGTATTGTTAGCTTATTATTCGAATATAAGCTAGCTAGTTGATGAAATAATTAGTCAAAGTGATTGTTGTTTATGTTTTGATGCCATGTTTATCCTACCTGGCGTACTAGTAGAGCATCTATCTCTATGGAAAGGGATTAAAGTAGCTAGCTTAATTGCAGCCTTGTCTGCTAAAGTTTAGGCTAGCTACTAAAGCTCTTTTATTTATCTTGTCTGCAATAATTTGTTATCTTGATGTGATTTCGGTCGTGTGAGATTGTAATATCGAGTTATGC----CAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BI805342 [CCCAGCTATCGCCCTCGTCTTGCGACGGCGGCGCCACCGTCAACCTCGACGCCGCCGGGATCCTGTTAGGCAGCTGCCTCGCCTTCGCGCCCACAGCCAGCGACCGCATGCCCGGCTTCATCGGCAACGTGCAGCCAGAAGACGCCTGGAGGTGGTGTACGACGTT CCCGCCAAGGCCATGCGATT CAGGACCGCCCGCCTGCTAAGTGCTAATTCAAATTTGCTTGCTTGCC AACTAGCGTATTGTTAGCTTATTATTCGAATATAAGCTAGCTAGTTGATGAAATAATTAGTCAAAGTGATTGTTGTTTATGTTTTGATGCCATGTTTATCCTACCTGGCGTACTAGTAGAGCATCTATCTCTATGGAAAGGGATTAAAGTAGCTAGCTTAATTGCAGCCTTGTCTGCTAAAGTTTAGGCTAGCTACTAAAGCTCTTTTATTTATCTTGTCTGCAATAATTTGTTATCTTGATGTGATTTCGGTCGTGTGAGATTGTAATATCGAGTTATGC CAAAAAAAAAA ] [+] EMBL AU029542 [ GCGGCNCCACCGTCAACCTNGACGCCGCCGGGATCCTGTTNGGCAGCTGCCTCGCCTTCGCGCCCACAGCCAGCGACCGCATGCCCGGCTTCATCGGCAACGTGCNG CAGAAGACG CTGGAGGTGGTGTACGACGTTCCCCGCCAAGGCCATGCGATTGCAGGACCG CCGCCTGCTAAGTGCTAATTCAAATTTGCTTGCTTGCCAAACTAGCGTATTGTTAGCTTATTATTCGAATATAAGCTAGCTAGTTGATGAAATAATTAGTCAAAGTGATTGTTGTTTATGTTTTGATGCCATGTTTATCCTACATGGCGTACTAGTAGAGCATCTATCTCTATGGAAAGGGATTAAAGTAGCTAGCTTAATTGCAGCATTGTCTGCTAAAGTTTAGGCTAGCTACTAAAGCTCTTTTATTTATCTTGTCTGCAATAATTTGTTATCTTGATGTGATTTCGGTCGTGTGAGATTGTAATATCGAGTTATGCATCTCAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13647#0 AGGGTAACCCACAGCTTAGCTAGCAAGCAGCAGCAAGCCAACATAGTAGCTAGCACGTAC 60 consensus_13647#3 ------------------------------------------------------------ consensus_13647#1 ------------------------------------------------------------ consensus_13647#2 ------------------------------------------------------------ consensus_13647#0 AAATGATCGCCATGACTCCTCTTGGACTACTGCTAGTGCTTCTCGTCCTCTGTAGCTCCA 120 consensus_13647#3 ------------------------------------------------------------ consensus_13647#1 ------------------------------------------------------------ consensus_13647#2 ------------------------------------------------------------ consensus_13647#0 TTCTTGTTGCCCATGGAGGAGACGCTGCAGCCGGCGCCTATATGGTCATAGCAACCAGCA 180 consensus_13647#3 ------------------------------------------------------------ consensus_13647#1 ------------------------------------------------------------ consensus_13647#2 ------------------------------------------------------------ consensus_13647#0 CCATGAAACCGAAAACTTTCTGCTCCGGCCACAAGGTTGCTCCAGGGGACGTGCCGTCGC 240 consensus_13647#3 ------------------------------------------------------------ consensus_13647#1 ------------------------------------------------------------ consensus_13647#2 ------------------------------------------------------------ consensus_13647#0 CGAACAGCACTTGGGCACCGTTGCATCACCTGTATGGGCCATGCTCGCCGGCGCCGTCGT 300 consensus_13647#3 ------------------------------------------------------------ consensus_13647#1 ------------------------------------------------------------ consensus_13647#2 ------------------------------------------------------------ consensus_13647#0 CGGCCAACAGCACCGCCGCCGACGTCGCCGCTTCCATGGCCGACATGGTCGACGACGACC 360 consensus_13647#3 ------------------------------------------------------------ consensus_13647#1 ------------------------------------------------------------ consensus_13647#2 ------------------------------------------------------------ consensus_13647#0 AACGCCGCGCGGACTACATCCAAAAGAGGCTCACCGGCGCCACCGACGACAAGCAGCCGA 420 consensus_13647#3 ------------------------------------------------------------ consensus_13647#1 ------------------------------------------------------------ consensus_13647#2 ------------------------------------------------------------ consensus_13647#0 TGGCCTTTTCGAGCAGAACCTCGCAATACGAGAAGAACGGCCAGTACGCCACTAATGGTG 480 consensus_13647#3 ------------------------------------------------------------ consensus_13647#1 ------------------------------------------------------------ consensus_13647#2 ------------------------------------------------------------ consensus_13647#0 GCTTAGGCAGTGTGCCTCACCTCAAAAGTTTATCAACGACGGCGACGACGAATTCGGCGC 540 consensus_13647#3 ------------------------------------------------------------ consensus_13647#1 ------------------------------------------------------------ consensus_13647#2 ------------------------------------------------------------ consensus_13647#0 CGGATGGCACGTCGGCGGTGACCCAGACGGTGATAATCGACTCCGGCAGCGACGTTTCAT 600 consensus_13647#3 ------------------------------------------------------------ consensus_13647#1 ------------------------------------------------------------ consensus_13647#2 ------------------------------------------------------------ consensus_13647#0 GGGTGCAATGCAAGCCATGCCCCTTGCCGATGTGCCACCGGCAACGGGACCCCCTGTTCG 660 consensus_13647#3 ------------------------------------------------------------ consensus_13647#1 ------------------------------------------------------------ consensus_13647#2 ------------------------------------------------------------ consensus_13647#0 ACCCGGCCATGTCGACCACGTACGCCGCCGTCCCCTGCACCTCCGCCGCCTGCGCGCAGC 720 consensus_13647#3 ------------------------------------------------------------ consensus_13647#1 ------------------------------------------------------------ consensus_13647#2 ------------------------------------------------------------ consensus_13647#0 TCGGCCCCTACCGCCGCGGCTGCTCCGCCAACGCGCAGTGCCAGTTCGGCATCAACTACG 780 consensus_13647#3 ------------------------------------------------------------ consensus_13647#1 ------------------------------------------------------------ consensus_13647#2 ------------------------------------------------------------ consensus_13647#0 GCGACGGGTCGACGGCGACCGGGACGTACAGCTTCGACGACCTCACGCTGGGCCCCTACG 840 consensus_13647#3 ------------------------------------------------------------ consensus_13647#1 CCAACGGCGCGACGGCGACCGGGACGTATAGCTCCGACGACCTCACACTGGGCCCCTACG 60 consensus_13647#2 ------------------------------------------------------------ consensus_13647#0 ACGTCATCAGGGGCTTCCGCTTCGGCTGTGCGCATGCCGATAGGGGGAGTGCGTTCGACT 900 consensus_13647#3 ------------------------------------------------------------ consensus_13647#1 ACGTCGTCAGGGGCTTCCTCTTCGGCTGCGCGCACGCCGACCAGGGAAGCACCTTCAGCT 120 consensus_13647#2 ------------------------------------------------------------ consensus_13647#0 ACGACGTCGCCGGGTCACTGGCGCTCGGCGGCGGCTCGCAGTCGCTGGTGCAGCAGACGG 960 consensus_13647#3 ------------------------------------------------------------ consensus_13647#1 ACGACGTCGCCGGAACCCTGGCTCTCGGCGGCGGCTCACAGTCTTTCGTGCAGCAGACGG 180 consensus_13647#2 ------------------------------------------------------------ consensus_13647#0 CGACGCGGTACGGCAGGGTCTTCTCCTACTGCCTCCCGCCGACGGCGAGCTCCCTCGGCT 1020 consensus_13647#3 ------------------------------------------------------------ consensus_13647#1 CGAGTCAGTACAGCAGGGTGTTCTCGTACTGCGTCCCGCCGTCGACGAGCTCCTTCGGGT 240 consensus_13647#2 ------------------------------------------------------------ consensus_13647#0 TCCTCGTTCTCGGCGTGCCGCCGGAACGCGCCCAGCTCATCCCGAGCTTCGTCTCCACGC 1080 consensus_13647#3 ------------------------------------------------------------ consensus_13647#1 TCATCATGTTCGGCGTGCCGCCGCAGCGCGCCGCGCTCGTCCCGACCTTCGTCTCCACGC 300 consensus_13647#2 ------------------------------------------------------------ consensus_13647#0 CACTGCTGAGCAGCAGCA---TGGCGCCCACGTTCTACAGGGTGCTCCTCCGCGCCATCA 1137 consensus_13647#3 ------------------------------------------------------------ consensus_13647#1 CGTTGCTGAGCAGCAGCACCATGTCGCCGACGTTCTACAGGGTGCTCCTCCGCTCCATCA 360 consensus_13647#2 ------------------------------------------------------------ consensus_13647#0 TCGTGGCGGGGCGCCCACTCGCCGTGCCACCGGCCGTGTTTTCCGCCAGCTCGGTCATCG 1197 consensus_13647#3 ------------------------------------------------------------ consensus_13647#1 TCGTGGCGGGACGCCCGCTCCCCGTGCCGCCCACTGTCTTCTCCGCCAGCTCTGTGATCG 420 consensus_13647#2 ------------------------------------------------------------ consensus_13647#0 ACTCCTCCACGATCATCTCGCGCCTGCCGCCGACGGCGTACCAGGCGCTGCGCGCGGCGT 1257 consensus_13647#3 ------------------------------------------------------------ consensus_13647#1 ACTCCGCCACCGTCATCTCGCGGATTCCGCCGACGGCGTACCAGGCGCTGCGCGCGGCGT 480 consensus_13647#2 ------------------------------------------------------------ consensus_13647#0 TCAGGAGCGCCATGACCATGTACCGGGCGGCGCCGCCGGTGTCCATCCTCGACACCTGCT 1317 consensus_13647#3 ------------------------------------------------------------ consensus_13647#1 TTAGGAGCGCGATGACCATGTACCGGCCGGCGCCGCCGGTGTCCATCCTCGACACGTGCT 540 consensus_13647#2 ------------------------------------------------------------ consensus_13647#0 ACGACTTCACCGGCGTCCGCAGCATCACCCTGCCCAGC-ATCGCCCTCGTCTT-CGACGG 1375 consensus_13647#3 --------------------------------CCCAGCTATCGCCCTCGTCTTGCGACGG 28 consensus_13647#1 ACGACTTTTCTGGCGTCCGCAGCATCACCCTGCCCAGC-ATCGCCCTGGTGTT-CGACGG 598 consensus_13647#2 --------ACCGGCGTCCGCAGCATCACCCTTCCCAGC-ATCGCCCTCGTCTT-CGACAT 50 ****** ******** ** ** **** consensus_13647#0 CGGCGCCACCGTCAACCTCGACGCCGCCGGGATCCTGTTAGGCAGCTGCCTCGCCTTCGC 1435 consensus_13647#3 CGGCGCCACCGTCAACCTCGACGCCGCCGGGATCCTGTTAGGCAGCTGCCTCGCCTTCGC 88 consensus_13647#1 CGGGGCCACCGTCAACCTCGACGCGGCGGGGATCCTGCTCCAAGGCTGCCTCGCCTTCGC 658 consensus_13647#2 GGGCGCCACCGTCAACCTCGACGCGTCCGGGATCCTCCTCGGCAGCTGCCTCGCCTTCGC 110 ** ******************** * ******** * **************** consensus_13647#0 GCCCACAGCCAGCGACCGCATGCCCGGCTTCATCGGCAACGTGCAGC-AGAAGACGC-TG 1493 consensus_13647#3 GCCCACAGCCAGCGACCGCATGCCCGGCTTCATCGGCAACGTGCAGCCAGAAGACGCCTG 148 consensus_13647#1 GCCCACCGCCAGCGACCGCATGCCAGGGTTCATCGGTAACGTTCAGC-AGCGCACGC-TC 716 consensus_13647#2 GCCAACCGCCAGCGACCGCATGCCAGGGTTCATCGGCAACGTGCAGC-AGCGCACGC-TG 168 *** ** ***************** ** ******** ***** **** ** **** * consensus_13647#0 GAGGTGGTGTACGACGTTCCCGCCAAGGCCATGCGATTCAGGACCGCC-GCCTGCTAAGT 1552 consensus_13647#3 GAGGTGGTGTACGACGTTCCCGCCAAGGCCATGCGATTCAGGACCGCCCGCCTGCTAAGT 208 consensus_13647#1 GAGGTGGTGTACGACGTCCCCGGCAAGGCCATTCGATTCCGGAGCGCC-GCCTGCTAAAT 775 consensus_13647#2 GAGGTGGTGTACGACGTCCCCGGCAAGGCCATGCGATTCCGGAGCGCC-GCCTGCTAATT 227 ***************** **** ********* ****** *** **** ********* * consensus_13647#0 --GCTAATTCAAATT---------------TGCTTGCTTGCCAA----ACTAGCGTA--T 1589 consensus_13647#3 --GCTAATTCAAATT---------------TGCTTGCTTGCCAA-----CTAGCGTA--T 244 consensus_13647#1 --T--------AATT---------------TGCTTGCTTGCCAA----ACTAGC------ 800 consensus_13647#2 AATTTGCTTCTAATTATCTGCCTCTATAATTGCTTGCTTGCCAATTAAACTAGCTTAGTT 287 **** ************** ***** consensus_13647#0 TGTTAGCTTATTATTCGA-ATATAAGCTAGCTAGTTGATGAAATAA--TTAGTCAAAGTG 1646 consensus_13647#3 TGTTAGCTTATTATTCGA-ATATAAGCTAGCTAGTTGATGAAATAA--TTAGTCAAAGTG 301 consensus_13647#1 --TTGGTTTATTA--------ATTAGCT---TGGTTGATGAAATAA--TTAGTCAATTTA 845 consensus_13647#2 TATTAGCTTACTGGAATATAAGCTAGCTAGCTAGTTGATGAAATAAATTTAGTCAAATTA 347 ** * *** * **** * ************* ******** * consensus_13647#0 ATTGTTGTTTATG--TTTTGATGCCATGTTTATCCTACATGGCGTA-CTAGTAGAGCATC 1703 consensus_13647#3 ATTGTTGTTTATG--TTTTGATGCCATGTTTATCCTACCTGGCGTA-CTAGTAGAGCATC 358 consensus_13647#1 ATCGCTGTTTATC--TTCTCATGACATGTTTATCCTACA----GTA-CTAGTAGAGCATC 898 consensus_13647#2 AGGAGTATCTACCAGTGATTAAGCTGAACCTACCCATCACTGTTTATCTTTTTGAATCTA 407 * * * ** * * * * ** ** * ** ** * ** * consensus_13647#0 TAT---CTCTATGG------------------AAAGGGATTAAAGTAGCTAGCTTAATTG 1742 consensus_13647#3 TAT---CTCTATGG------------------AAAGGGATTAAAGTAGCTAGCTTAATTG 397 consensus_13647#1 TATGATCTCTATGG------------------AAAGGGATTAAAGTAGCTGGCTTGCAGC 940 consensus_13647#2 TGTTTATCCTACAGTATTAGAGCATCTCTATGAGAGGGATTAAAGTAGTTAGCTT----- 462 * * *** * * ************** * **** consensus_13647#0 CAGCATTGTCTGCTAAAGTTTAG---GCTAGCTACTAAAGCTCTTTTATTTATCTTGTCT 1799 consensus_13647#3 CAGCCTTGTCTGCTAAAGTTTAG---GCTAGCTACTAAAGCTCTTTTATTTATCTTGTCT 454 consensus_13647#1 ATGCATTGTCTGCTAAAGTTTAG---GCTAGCTAGCAAAGCTCTTTTGTTTATGTTGTCT 997 consensus_13647#2 --GCATTGTCTGCTAAAGTTATGCTAGCTGGCTATCAAAGCTCTTT----------GTCT 510 ** *************** * *** **** ********** **** consensus_13647#0 GCAATAATTTGTTA----TCTTGATGTGAT----TT-CGGTCGTGTGAGATTGTAATATC 1850 consensus_13647#3 GCAATAATTTGTTA----TCTTGATGTGAT----TT-CGGTCGTGTGAGATTGTAATATC 505 consensus_13647#1 GCAATAATTAGTTAATTATCTTGATGTCAT----TTGTGCTCGTGTGAGATTGTAATATC 1053 consensus_13647#2 GTAATAATTAGTTA----TCTTGATGTGATATATTTGTGATCGTGTGAGATTGTAATGCA 566 * ******* **** ********* ** ** * ***************** consensus_13647#0 GAGTTATGCATCTCCATCTTGCATGTCAAGTGATGTACTACTTTTTCCATATCTAAAAAA 1910 consensus_13647#3 GAGTTATGC----CAAAAAAAAAAAAAAAAAAAAAAAAAA-------------------- 541 consensus_13647#1 GAGTTATGT----CCATCTTA----TCAAGTCATGTACTACTTTTCCCATATCTATAGCC 1105 consensus_13647#2 GTCATGTACTGCGTCCATCTAT-TGTTTGTCAAGGGACTGATTTTTCCAAACCT-TACCT 624 * * * * * consensus_13647#0 ------------- consensus_13647#3 ------------- consensus_13647#1 TTTTTACA----- 1113 consensus_13647#2 TTATGGCTTTAAT 637 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||