These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13663#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1225 fasta sequence [CAACCATTTCTCCTGGGCCTTGCTCCGCTCCACCTCCCACCAAACCCTAACCCTAACCCTAACGCGCCTACCACGCGAGGCGCGGCGGCGGCGGCGG-GCACCATGTCCGCGGCGGTGTGCGGCAAACGGGCCTCCTCCTTCTTCGAGGACCTCCCCCATTCGCCGTCCTCCCCGCCCTCCAAGCGCGCCTGCTTCCGTGGAGGTTCCTCGCCCTCCCGCCCGCTCGCCGACCCGGCCCTCGTCGCCCAGATCCGCCCGCGGTTCCCCTCCGTCGGCCTCGAGGTTATTGAGAACGCGTTGGAGGAATGTGAAAACGATTTTGATTCAGCAATAAAGTTC-TTGTTCAATTTGCATGTAGGACCCACAGAATGTAATGTGGATCCTATTTATCAATCTCCATCAGGAATGTCT-ACTGA-GCTTCAAGTGGCTGATGAAGGTATTTTGGCTGGTAATGAAGCTGCTGTACCTATAGGAAATGCTCCCTGCGCTGATAACTTT--CCATC-AAGCAGCACCCAGT-GGGTTGAGATTCTTGTGAACGAGATGACTAATGCCTCTAACATGGATGATGCAAAGGCTCGTGCCTCTAGAGTATTGGAGGTGTTTGAGAAGTCCATGACCGCTCATGTTGGTGC-A-ATGGGGAGCTTTCAGAAGGAAAGCTCTGTGTATAAGGA-ACAGTTTGAAGCAATAACCAGGGAAAATACTATTCTAAAGAAAGCCGTTGCA-ATTCAGCACGAGCGCCAAAAGGAGCA-TGA-TGGGAG-AAACCAGGAGATTCAGCAACTCAAGCAGCTGGTTGCTCAG-TACCA-AGAGCA-AAT-TAGAAGCCTGGAGGTAAACA-ACTATGCACTGTCCATGCATCTTAGGCAAGCTCAGCAAGCCA-ACTCGATTCCA-GGGCACTTCCA-TCGGGAC-ATCTTCTGAATAACTTCATACCTAAACCGGAGGTTTCCATAGAATGAGATATCGTTCACCCAACAATTAAGGGCAGAGTTCTTGTTCTTGGCTTATATCCAATATATTGCCAAGTTATAAACATAGTTTAATGTATGTTGTAGACCTGTGTGTACATGCTTGTCTTGCGT-TGTGCTGT-TGGCCCCCTAAGATGGGATTGTGTGCGAGCAAGCGCAAAGAAAGCTTAGTTCATTCGAACGGCAGACAGAATATGATCAAGTTAGAAAAGAAAAAAAGAAAAGAAAAGAAAAGCGAAAGAGCCTTTAAAATTATTCTCCAAAAA] [+] EMBL AU094752 [CAACCATTTCTCCTGGGCCTTGCTCCGCTCCACCTCCCACCAAACCCTAACCCTAACCCTAACGCGCCTACCACGCGAGGCGCGGCGGCGGCGGCGG GCACCATGTCCGCGGCGGTGTGCGGCAAACGGGCCTCCTCCTTCTTCGAGGACCTCCCCCATTCGCCGTCCTCCCCGCCCTCCAAGCGCGCCTGCTTCCGTGGAGGTTCCTCGCCCTCCCGCCCGCTCGCCGACCCGGCCCTCGTCGCCCAGATCCGCCCGCGGTTCCCCTCCGTCGGCCTCGAGGTTATTGAGAACGCGTTGGAGGAATGTGAAAACGATTTTGATTCAGCAATAAAGTTC TTGTTCAATTTGCATGTAGGACCCACAGAATGTAATGTGGATCCTATTTATCAATCTCCATCAGGAATGTCT ACTGA GCTTCAAGTGGCTGATGAAGGTATTTTGGCT ] [+] EMBL C28239 [CAACCATTTCTCCTGGGCCTTGCTCCGCTCCACCTCCCACCAAACCCTAACCCTAACCCTAACGCGCCTACCACGCGAGGCGCGGCGGCGGCGGCGG GCACCATGTCCGCGGCGGTGTGCGGCAAACGGGCCTCCTCCTTCTTCGAGGACCTCCCCCATTCGCCGTCCTCCCCGCCCTCCAAGCGCGCCTGCTTCCGTGGAGGTTCCTCGCCCTCCCGCCCGCTCGCCGACCCGGCCCTCGTCGCCCAGATCCGCCCGCGGTTCCCCTCCGTCGGCCTCGAGGTTATTGAGAACGCGTTGGAGGAATGTGAAAACGATTTTAATTCAGCAATAAAGTTC TTGTTCAATTTGCATGTAGGACCCACAGAATGTAATGTGGATCCTATTTATNAATCTCCATCAGGAATGTCTAATTGA GCTTCAAGTGGNTTATGAAGGTAT ] [+] EMBL AK102931 [ TTCTCCTGGGCCTTGCTCCGCTCCACCTCCCACCAAACCCTAACCCTAACCCTAACGCGCCTACCACGCGAGGCGCGGCGGCGGCGGCGG GCACCATGTCCGCGGCGGTGTGCGGCAAACGGGCCTCCTCCTTCTTCGAGGACCTCCCCCATTCGCCGTCCTCCCCGCCCTCCAAGCGCGCCTGCTTCCGTGGAGGTTCCTCGCCCTCCCGCCCGCTCGCCGACCCGGCCCTCGTCGCCCAGATCCGCCCGCGGTTCCCCTCCGTCGGCCTCGAGGTTATTGAGAACGCGTTGGAGGAATGTGAAAACGATTTTGATTCAGCAATAAAGTTC TTGTTCAATTTGCATGTAGGACCCACAGAATGTAATGTGGATCCTATTTATCAATCTCCATCAGGAATGTCT ACTGA GCTTCAAGTGGCTGATGAAGGTATTTTGGCTGGTAATGAAGCTGCTGTACCTATAGGAAATGCTCCCTGCGCTGATAACTTT CCATC AAGCAGCACCCAGT GGGTTGAGATTCTTGTGAACGAGATGACTAATGCCTCTAACATGGATGATGCAAAGGCTCGTGCCTCTAGAGTATTGGAGGTGTTTGAGAAGTCCATGACCGCTCATGTTGGTGC A ATGGGGAGCTTTCAGAAGGAAAGCTCTGTGTATAAGGA ACAGTTTGAAGCAATAACCAGGGAAAATACTATTCTAAAGAAAGCCGTTGCA ATTCAGCACGAGCGCCAAAAGGAGCA TGA TGGGAG AAACCAGGAGATTCAGCAACTCAAGCAGCTGGTTGCTCAG TACCA AGAGCA AAT TAGAAGCCTGGAGGTAAACA ACTATGCACTGTCCATGCATCTTAGGCAAGCTCAGCAAGCCA ACTCGATTCCA GGGCACTTCCA TCGGGAC ATCTTCTGAATAACTTCATACCTAAACCGGAGGTTTCCATAGAATGAGATATCGTTCACCCAACAATTAAGGGCAGAGTTCTTGTTCTTGGCTTATATCCAATATATTGCCAAGTTATAAACATAGTTTAATGTATGTTGTAGACCTGTGTGTACATGCTTGTCTTGCGT TGTGCTGT TGGCCCCCTAAGATGGGATTGTGTGCGAGCAAGCGCAAAGAAAGCCTAGTTCATTCGAACGGCAGACAGAATATGATCAAGTTAGAAAAGAAAAAAAGAAAAGAAAAGAAAAGCGAAAGAGCCTTTAAA ] [+] EMBL AU093516 [ CCTTGCTCCGCTCCACCTCCCACCAAACCCTAACCCTAACCCTAACGCGCCTACCACGCGAGGCGCGGCGGCGGCGGCGG GCACCATGTCCGCGGCGGTGTGCGGCAAACGGGCCTCCTCCTTCTTCGAGGACCTCCCCCATTCGCCGTCCTCCCCGCCCTCCAAGCGCGCCTGCTTCCGTGGAGGTTCCTCGCCCTCCCGCCCGCTCGCCGACCCGGCCCTCGTCGCCCAGATCCGCCCGCGGTTCCCCTCCGTCGGCCTCGAGGTTATTGAGAACGCGTTGGAGGAATGTGAAAACGATTTTGATTCAGCAATAAAGTTC TTGTTCAATTTGCATGTAGGACCCACAGAATGT ] [+] EMBL OSC717 [ TGCTCCGCTCCACCTCCCACCAAACCCTAACCCTAACCCTAACGCGCCTACCACGCGAGGCG GCNGGCGGCGGCGGNGCACCATGTCCGCGGCGGTGTGCGGCAAACGGGCCTCCTCCTTCTTCGAGGACCTCCCCCATTCNCCGTCCTCCCCNCCCTCCAAGCGCGCCTGCTTCCGTGGAGGTTCCTCGCCCTCCCGCCCGCTCGCCGACCCNG CCTCGTCGCCCAGATCCGCCCGCGTNTCCCCTCCGTCGGCCTCGAGGTTATTGAGAACGCGTTGGAGGAATGTGAAAACGATTTTGATTCAGCAATAAAGTTCTTTGTTCAATTTGCATGTAGGACCCACAGAATGTAATGTGGATCCTATTTATCAATCTTCATCAGGAATGTCT ACTNAGGTTTNAAGTGGCTGATGAAGGTATTTTGGCTGGTAATGAAGCTG ] [+] EMBL BP184712 [ CCGACCCGGCCCTCGTCGCCCAGATCCGCCCGCGGTTCCCCTCCGTCGGCCTCGAGGTTATTGAGAACGCGTTGGAGGAATGTGAAAACGATTTTGATTCAGCAATAAAGTTC TTGTTCAATTTGCATGTAGGACCCACAGAATGTAATGTGGATCCTATTTATCAATCTCCATCAGGAATGTCT ACTGA GCTTCAAGTGGCTGATGAAGGTATTTTGGCTGGTAATGAAGCTGCTGTACCTATAGGAAATGCTCCCTGCGCTGATAACTTT CCATC AAGCAGCACCCAGT GGGTTGAGATTCTTGTGAACGAGATGACTAATGCCTCTAACATGGATGATGCAAAGGCTCGTGCCTCTAGAGTATTGGAGGTGTTTGAGAAGTCCATGACCGCTCATGTTGGTGC A ATGGGGAGCTTTCAGAAGGAAAGCTCTGTGTATAAGGA ACAGTTTGAAGCAATAACCAGGGAAAATACTATTCTAAAGAAAGCCGTTGCA ATTCAGCACGAGCGCCAAAAGGAGCA TGA TGGGAG AACCAGG ] [+] EMBL BP184713 [ AATGCTCCCTGCGCTGATAACTTT CCATC AAGCAGCACCCAGT GGGTTGAGATTCTTGTGAACGAGATGACTAATGCCTCTAACATGGATGATGCAAAGGCTCGTGCCTCTAGAGTATTGGAGGTGTTTGAGAAGTCCATGACCGCTCATGTTGGTGC A ATGGGGAGCTTTCAGAAGGAAAGCTCTGTGTATAAGGA ACAGTTTGAAGCAATAACCAGGGAAAATACTATTCTAAAGAAAGCCGTTGCA ATTCAGCACGAGCGCCAAAAGGAGCA TGA TGGGAG AAACCAGGAGATTCAGCAACTCAAGCAGCTGGTTGCTCAG TACCA AGAGCA AAT TAGAAGCCTGGAGGTAAACA ACTATGCACTGTCCATGCATCTTAGGCAAGCTCAGCAAGCCA ACTCGATTCCA GGGCACTTCCA TCGGGAC ATCTTCTGAATAACTTCATACCTAAACCGGAGGTTTCCATAGAATGAGATATCGTTCACCCAACAATTAAGGGCAGAGTTCTTGTTCTTGGCTTATATCCAATATATTGCCAAGTTATAAACATAGTTTAATGTATGTTGTAGACCTGTGTGTACATGCTTGTCTTGCGT TGTGCTGT TGGCCCCCTAAGATGGGATTGTGTGCGAGCAAGCGCAAAGAAAGCTTAGTTCATTCGAACGGCAGACAGAATATGATCAAGTTAGAAAAGAAAAAAAGAAAAGAAAAGAAAAGCGAAAGAGCCTTTAAAATTATTCTCCAAAAA] [+] EMBL AU094439 [ tTGA AACTTTTCCCATCAAAGCAGCACCCAGTGGGGTTNAGATTCTTGTGACCAAGATG CTAATGCNTCTAACATGGATGATGCAAAGGCTCGTGCCTCTAGAGTATTGNAGGTGTTTGAGAAGTCCATGACCGCTCATGTTGGTNC A ATGGGGAGCTTTCAGAAGGAAAGCTCTGTGTATAAGGA NCAGTTTGAAGCAATACCCAGGGAAAATACTATTCTAAAGAAAGCCGTTGCA ATTCAGCACGAGCGCCAAAAGGAGCA TGA TGGGAG AAACCAGGAGATTCAGCAACTCAAGCAGCTGGTTGCTCAG TACCA AGAGCA AAT TAGAAGCCTGGAGGTAAACA ACTATGCACTGTCCATGCATCTTAGGCAAGCTCAGCAAGCCA ACTCGATTCCA GGGCACTTCCA TCGGGAC ATCTTCTGAATAACTTCATACCTAAACCGGAGGTTTCCATAGAATGAGATATCGTTCACCCAACAATTAAGGGCAGAGTTCTTGTTCTTGGCTTATATCCAATATATTGCCAAGTTATAAACATAGTTTAATGTATGTTGTAGACCTGTGTGTACATGCTTGTCTTGCGT TGTGCTGT TGGCCCCCTAAGATGGGATTGTGTGCGAGCAAGCGCAAAGAAAGCTTAGTTCATTCGAACGGCAGACAGAATATGATCAAGTTAGAAAAGAAAAAA ] [+] EMBL BI808597 [ ATGA CCAA GCTC T CCTCTAGA TATT GA GT TTTGAGAA TCCATGACCCCTCAT TTGGT C ACAT GGGA CTTTCAGAAGGAAA CTCTGTGTATAAGGA ACAGTTTGAA CCATAACCAGGGAAAATACTATTCTAAAGAAA CC TT CACATTCAGCACGAGCGCCAAAAGGAGCA TGA TGGGAG AAACCAGGAGATTCAGCAACTCAAGCAGCTGGTTGCTCAG TACCACAGAGCACAAT TAGAAGCCTGGAGGTAAACACACTATGCACTGTCCATGCATCTTAGGCAAGCTCAGCAAGCCACACTCGATTCCACGGGCACTTCCACTCGGGAC ATCTTCTGAATAACTTCATACCTAAACCGGAGGTTTCCATAGAATGAGATATCGTTCACCC AC ATTAAGGGCAGAGTTCTTGTTCTTGGCTTATATCC ATATATTGCCAAGTTATAAACATAGTTTAATGTATGTTGTAGACCCGTGTGTACATGCTTGTCTTGCGT TGTGCTGT TGGCCCCCTAAGATGGGATTGTGTGCGAGCAAGCGC AAGAAAGCTTAGTTCATTCGAACGGCAGACAGAATATGATC AGTTAGAAAAGAAAAAAAGAAAAGAAAAGAA ] [+] EMBL BI799881 [ TTGGCCCAA ATGGGGAGCTTTCAGAAGGAAAGCTCTGTGTATAAGGACACAGTTTGAA C ATAACCAGGGAAAATACTATTCTAAAGAAACCCGTTCCA ATTCAGCACGAGCGCC AAAGGAGCA TGA TGGGAG AAACCAGGAGATTCAGCAACTCAAGCAGCTGGTTGCTCAG TACC AGAGCA AAT TAGAAGCCTGGAGGTAAACA ACTATGCCCTGTCCATGCATCTTAGGCAAGCTCAGCAAGCCA ACTCGATTCCA GGGCACTTCCA TCGGGAC ATCTTCTGAATAACTTCATACCTAAACCGGAGGTTTCCATAGAATGAGATATCGTTCACCCAACAATTAAGGGCAGAGTTCTTGTTCTTGGCTTATATCC ATATATTGCC AGTTATAAACATAGTTTAATGTATGTTGTAGACCTGTGTGTACATGCTTGTCTTGCGT TGTGCTGT TGGCCCCCTAAGATGGGATTGTGTGCGAGC AGCGC AAGAAAGCTTAGTTCATTCGAACGGCAGACAGAATATGATC AGTTAGAAAAGAAAAA ] [+] EMBL AU093515 [ CA ATTCAGCACGAGCGCCAAAAGGAGCA TGA TGGGAG AAACCAGGAGATTCAGCAACTCAAGCAGCTGGTTGCTCAG TACCA AGAGCA AAT TAGAAGCCTGGAGGTAAACA ACTATGCACTGTCCATGCATCTTAGGCAAGCTCAGCAAGCCA ACTCGATTCCA GGGCACTTCCA TCGGGAC ATCTTCTGAATAACTTCATACCTAAACCGGAGGTTTCCATAGAATGAGATATCGTTCACCCAACAATTAAGGGCAGAGTTCTTGTTCTTGGCTTATATCCAATATATTGCCAAGTTATAAACATAGTTTAATGTATGTTGTAGACCTGTGTGTACATGCTTGTCTTGCGT TGTGCTGT TGGCCCCCTAAGATGGGATTGTGTGCGAGCAAGCGCAAAGAAAGCTTAGTTCATTCGAACGGCAGACAGAATATGATCAAGTTAGAAAAGAAAAAAAAAAAAa ] [+] EMBL BI807509 [ tcaAGCACGA AGCCCAAAGGAGCATTGATTGGGAGAAAACCAGGAGATTCA CTACTCAAGCAGCTG TGCTCAGTTACCA AGAGCG AATGTAGAAGCCTGGA GTAAACAGACTATGCACTGTCCATGCATCTTAGGCAAGCTCAGCAAGCC ACTCGATTCCA GGGCACTTCCA TCGGGACAATCTTCTGAATAACTTCATACCTAAACCGGAGGTTTCCATAGAATGAGATATCGTTCACCC AC ATTAAGGGCAGAGTTCTTGTTCTTGGCTTATATCCAATATATTGCCAAGTTATAAACATAGTTTAATGTATGTTGTAGACCTGTGTGTACATGCTTGTCTTGCGTGTGTGCTGTGTGGCCCCCTAAGATGGGATTGTGTGCGAGC AGCGC ] [+] EMBL AU029690 [ GCANCTCAAGCAGCTGGTTGCTCAG TCCCA AGAGCA AAT TAGAANCCTGGAGGTAAACA ACTATGCACTGNCCATGCATCTTAGGCAAGCTCAGCAAGCCA ACTCGATTCCA GGGCACTTCCA TCGGGAC ATCTTCTGAATAACTTCATNCCTAAACCGGAGGTTTCCATAGAATGAGATATCGTTCACCCAACAATTAAGGGCAGAGTTCTTGTTCTTNGCTTATATCCAATATATTNCCAAGTTATAAACATAGTTTAATGTATGTTGTAGACCTGTGTGTACATGCTTGTCTTGCGT TGTGCTGT TNNCCCCCTAAGATGGGATTGTGTGCGAGCAAGCGCAAAGAAAGCTTAGTTCATTCGAACGGCAGACAGAATATGATCAAGTTAGAAAAGAAAAA ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||