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Oryza sativa
cluster # 13663 cluster # 13663       Sequences # 13       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13663#0 length = 1225 sequences # 13  

consensusID : consensus_13663#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 13
consensus length = 1225
fasta sequence
                              [CAACCATTTCTCCTGGGCCTTGCTCCGCTCCACCTCCCACCAAACCCTAACCCTAACCCTAACGCGCCTACCACGCGAGGCGCGGCGGCGGCGGCGG-GCACCATGTCCGCGGCGGTGTGCGGCAAACGGGCCTCCTCCTTCTTCGAGGACCTCCCCCATTCGCCGTCCTCCCCGCCCTCCAAGCGCGCCTGCTTCCGTGGAGGTTCCTCGCCCTCCCGCCCGCTCGCCGACCCGGCCCTCGTCGCCCAGATCCGCCCGCGGTTCCCCTCCGTCGGCCTCGAGGTTATTGAGAACGCGTTGGAGGAATGTGAAAACGATTTTGATTCAGCAATAAAGTTC-TTGTTCAATTTGCATGTAGGACCCACAGAATGTAATGTGGATCCTATTTATCAATCTCCATCAGGAATGTCT-ACTGA-GCTTCAAGTGGCTGATGAAGGTATTTTGGCTGGTAATGAAGCTGCTGTACCTATAGGAAATGCTCCCTGCGCTGATAACTTT--CCATC-AAGCAGCACCCAGT-GGGTTGAGATTCTTGTGAACGAGATGACTAATGCCTCTAACATGGATGATGCAAAGGCTCGTGCCTCTAGAGTATTGGAGGTGTTTGAGAAGTCCATGACCGCTCATGTTGGTGC-A-ATGGGGAGCTTTCAGAAGGAAAGCTCTGTGTATAAGGA-ACAGTTTGAAGCAATAACCAGGGAAAATACTATTCTAAAGAAAGCCGTTGCA-ATTCAGCACGAGCGCCAAAAGGAGCA-TGA-TGGGAG-AAACCAGGAGATTCAGCAACTCAAGCAGCTGGTTGCTCAG-TACCA-AGAGCA-AAT-TAGAAGCCTGGAGGTAAACA-ACTATGCACTGTCCATGCATCTTAGGCAAGCTCAGCAAGCCA-ACTCGATTCCA-GGGCACTTCCA-TCGGGAC-ATCTTCTGAATAACTTCATACCTAAACCGGAGGTTTCCATAGAATGAGATATCGTTCACCCAACAATTAAGGGCAGAGTTCTTGTTCTTGGCTTATATCCAATATATTGCCAAGTTATAAACATAGTTTAATGTATGTTGTAGACCTGTGTGTACATGCTTGTCTTGCGT-TGTGCTGT-TGGCCCCCTAAGATGGGATTGTGTGCGAGCAAGCGCAAAGAAAGCTTAGTTCATTCGAACGGCAGACAGAATATGATCAAGTTAGAAAAGAAAAAAAGAAAAGAAAAGAAAAGCGAAAGAGCCTTTAAAATTATTCTCCAAAAA]

[+] EMBL AU094752             [CAACCATTTCTCCTGGGCCTTGCTCCGCTCCACCTCCCACCAAACCCTAACCCTAACCCTAACGCGCCTACCACGCGAGGCGCGGCGGCGGCGGCGG GCACCATGTCCGCGGCGGTGTGCGGCAAACGGGCCTCCTCCTTCTTCGAGGACCTCCCCCATTCGCCGTCCTCCCCGCCCTCCAAGCGCGCCTGCTTCCGTGGAGGTTCCTCGCCCTCCCGCCCGCTCGCCGACCCGGCCCTCGTCGCCCAGATCCGCCCGCGGTTCCCCTCCGTCGGCCTCGAGGTTATTGAGAACGCGTTGGAGGAATGTGAAAACGATTTTGATTCAGCAATAAAGTTC TTGTTCAATTTGCATGTAGGACCCACAGAATGTAATGTGGATCCTATTTATCAATCTCCATCAGGAATGTCT ACTGA GCTTCAAGTGGCTGATGAAGGTATTTTGGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL C28239               [CAACCATTTCTCCTGGGCCTTGCTCCGCTCCACCTCCCACCAAACCCTAACCCTAACCCTAACGCGCCTACCACGCGAGGCGCGGCGGCGGCGGCGG GCACCATGTCCGCGGCGGTGTGCGGCAAACGGGCCTCCTCCTTCTTCGAGGACCTCCCCCATTCGCCGTCCTCCCCGCCCTCCAAGCGCGCCTGCTTCCGTGGAGGTTCCTCGCCCTCCCGCCCGCTCGCCGACCCGGCCCTCGTCGCCCAGATCCGCCCGCGGTTCCCCTCCGTCGGCCTCGAGGTTATTGAGAACGCGTTGGAGGAATGTGAAAACGATTTTAATTCAGCAATAAAGTTC TTGTTCAATTTGCATGTAGGACCCACAGAATGTAATGTGGATCCTATTTATNAATCTCCATCAGGAATGTCTAATTGA GCTTCAAGTGGNTTATGAAGGTAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AK102931             [       TTCTCCTGGGCCTTGCTCCGCTCCACCTCCCACCAAACCCTAACCCTAACCCTAACGCGCCTACCACGCGAGGCGCGGCGGCGGCGGCGG GCACCATGTCCGCGGCGGTGTGCGGCAAACGGGCCTCCTCCTTCTTCGAGGACCTCCCCCATTCGCCGTCCTCCCCGCCCTCCAAGCGCGCCTGCTTCCGTGGAGGTTCCTCGCCCTCCCGCCCGCTCGCCGACCCGGCCCTCGTCGCCCAGATCCGCCCGCGGTTCCCCTCCGTCGGCCTCGAGGTTATTGAGAACGCGTTGGAGGAATGTGAAAACGATTTTGATTCAGCAATAAAGTTC TTGTTCAATTTGCATGTAGGACCCACAGAATGTAATGTGGATCCTATTTATCAATCTCCATCAGGAATGTCT ACTGA GCTTCAAGTGGCTGATGAAGGTATTTTGGCTGGTAATGAAGCTGCTGTACCTATAGGAAATGCTCCCTGCGCTGATAACTTT  CCATC AAGCAGCACCCAGT GGGTTGAGATTCTTGTGAACGAGATGACTAATGCCTCTAACATGGATGATGCAAAGGCTCGTGCCTCTAGAGTATTGGAGGTGTTTGAGAAGTCCATGACCGCTCATGTTGGTGC A ATGGGGAGCTTTCAGAAGGAAAGCTCTGTGTATAAGGA ACAGTTTGAAGCAATAACCAGGGAAAATACTATTCTAAAGAAAGCCGTTGCA ATTCAGCACGAGCGCCAAAAGGAGCA TGA TGGGAG AAACCAGGAGATTCAGCAACTCAAGCAGCTGGTTGCTCAG TACCA AGAGCA AAT TAGAAGCCTGGAGGTAAACA ACTATGCACTGTCCATGCATCTTAGGCAAGCTCAGCAAGCCA ACTCGATTCCA GGGCACTTCCA TCGGGAC ATCTTCTGAATAACTTCATACCTAAACCGGAGGTTTCCATAGAATGAGATATCGTTCACCCAACAATTAAGGGCAGAGTTCTTGTTCTTGGCTTATATCCAATATATTGCCAAGTTATAAACATAGTTTAATGTATGTTGTAGACCTGTGTGTACATGCTTGTCTTGCGT TGTGCTGT TGGCCCCCTAAGATGGGATTGTGTGCGAGCAAGCGCAAAGAAAGCCTAGTTCATTCGAACGGCAGACAGAATATGATCAAGTTAGAAAAGAAAAAAAGAAAAGAAAAGAAAAGCGAAAGAGCCTTTAAA               ]
[+] EMBL AU093516             [                 CCTTGCTCCGCTCCACCTCCCACCAAACCCTAACCCTAACCCTAACGCGCCTACCACGCGAGGCGCGGCGGCGGCGGCGG GCACCATGTCCGCGGCGGTGTGCGGCAAACGGGCCTCCTCCTTCTTCGAGGACCTCCCCCATTCGCCGTCCTCCCCGCCCTCCAAGCGCGCCTGCTTCCGTGGAGGTTCCTCGCCCTCCCGCCCGCTCGCCGACCCGGCCCTCGTCGCCCAGATCCGCCCGCGGTTCCCCTCCGTCGGCCTCGAGGTTATTGAGAACGCGTTGGAGGAATGTGAAAACGATTTTGATTCAGCAATAAAGTTC TTGTTCAATTTGCATGTAGGACCCACAGAATGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL OSC717               [                    TGCTCCGCTCCACCTCCCACCAAACCCTAACCCTAACCCTAACGCGCCTACCACGCGAGGCG GCNGGCGGCGGCGGNGCACCATGTCCGCGGCGGTGTGCGGCAAACGGGCCTCCTCCTTCTTCGAGGACCTCCCCCATTCNCCGTCCTCCCCNCCCTCCAAGCGCGCCTGCTTCCGTGGAGGTTCCTCGCCCTCCCGCCCGCTCGCCGACCCNG CCTCGTCGCCCAGATCCGCCCGCGTNTCCCCTCCGTCGGCCTCGAGGTTATTGAGAACGCGTTGGAGGAATGTGAAAACGATTTTGATTCAGCAATAAAGTTCTTTGTTCAATTTGCATGTAGGACCCACAGAATGTAATGTGGATCCTATTTATCAATCTTCATCAGGAATGTCT ACTNAGGTTTNAAGTGGCTGATGAAGGTATTTTGGCTGGTAATGAAGCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BP184712             [                                                                                                                                                                                                                                   CCGACCCGGCCCTCGTCGCCCAGATCCGCCCGCGGTTCCCCTCCGTCGGCCTCGAGGTTATTGAGAACGCGTTGGAGGAATGTGAAAACGATTTTGATTCAGCAATAAAGTTC TTGTTCAATTTGCATGTAGGACCCACAGAATGTAATGTGGATCCTATTTATCAATCTCCATCAGGAATGTCT ACTGA GCTTCAAGTGGCTGATGAAGGTATTTTGGCTGGTAATGAAGCTGCTGTACCTATAGGAAATGCTCCCTGCGCTGATAACTTT  CCATC AAGCAGCACCCAGT GGGTTGAGATTCTTGTGAACGAGATGACTAATGCCTCTAACATGGATGATGCAAAGGCTCGTGCCTCTAGAGTATTGGAGGTGTTTGAGAAGTCCATGACCGCTCATGTTGGTGC A ATGGGGAGCTTTCAGAAGGAAAGCTCTGTGTATAAGGA ACAGTTTGAAGCAATAACCAGGGAAAATACTATTCTAAAGAAAGCCGTTGCA ATTCAGCACGAGCGCCAAAAGGAGCA TGA TGGGAG  AACCAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BP184713             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AATGCTCCCTGCGCTGATAACTTT  CCATC AAGCAGCACCCAGT GGGTTGAGATTCTTGTGAACGAGATGACTAATGCCTCTAACATGGATGATGCAAAGGCTCGTGCCTCTAGAGTATTGGAGGTGTTTGAGAAGTCCATGACCGCTCATGTTGGTGC A ATGGGGAGCTTTCAGAAGGAAAGCTCTGTGTATAAGGA ACAGTTTGAAGCAATAACCAGGGAAAATACTATTCTAAAGAAAGCCGTTGCA ATTCAGCACGAGCGCCAAAAGGAGCA TGA TGGGAG AAACCAGGAGATTCAGCAACTCAAGCAGCTGGTTGCTCAG TACCA AGAGCA AAT TAGAAGCCTGGAGGTAAACA ACTATGCACTGTCCATGCATCTTAGGCAAGCTCAGCAAGCCA ACTCGATTCCA GGGCACTTCCA TCGGGAC ATCTTCTGAATAACTTCATACCTAAACCGGAGGTTTCCATAGAATGAGATATCGTTCACCCAACAATTAAGGGCAGAGTTCTTGTTCTTGGCTTATATCCAATATATTGCCAAGTTATAAACATAGTTTAATGTATGTTGTAGACCTGTGTGTACATGCTTGTCTTGCGT TGTGCTGT TGGCCCCCTAAGATGGGATTGTGTGCGAGCAAGCGCAAAGAAAGCTTAGTTCATTCGAACGGCAGACAGAATATGATCAAGTTAGAAAAGAAAAAAAGAAAAGAAAAGAAAAGCGAAAGAGCCTTTAAAATTATTCTCCAAAAA]
[+] EMBL AU094439             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           tTGA AACTTTTCCCATCAAAGCAGCACCCAGTGGGGTTNAGATTCTTGTGACCAAGATG CTAATGCNTCTAACATGGATGATGCAAAGGCTCGTGCCTCTAGAGTATTGNAGGTGTTTGAGAAGTCCATGACCGCTCATGTTGGTNC A ATGGGGAGCTTTCAGAAGGAAAGCTCTGTGTATAAGGA NCAGTTTGAAGCAATACCCAGGGAAAATACTATTCTAAAGAAAGCCGTTGCA ATTCAGCACGAGCGCCAAAAGGAGCA TGA TGGGAG AAACCAGGAGATTCAGCAACTCAAGCAGCTGGTTGCTCAG TACCA AGAGCA AAT TAGAAGCCTGGAGGTAAACA ACTATGCACTGTCCATGCATCTTAGGCAAGCTCAGCAAGCCA ACTCGATTCCA GGGCACTTCCA TCGGGAC ATCTTCTGAATAACTTCATACCTAAACCGGAGGTTTCCATAGAATGAGATATCGTTCACCCAACAATTAAGGGCAGAGTTCTTGTTCTTGGCTTATATCCAATATATTGCCAAGTTATAAACATAGTTTAATGTATGTTGTAGACCTGTGTGTACATGCTTGTCTTGCGT TGTGCTGT TGGCCCCCTAAGATGGGATTGTGTGCGAGCAAGCGCAAAGAAAGCTTAGTTCATTCGAACGGCAGACAGAATATGATCAAGTTAGAAAAGAAAAAA                                                ]
[+] EMBL BI808597             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ATGA  CCAA GCTC T CCTCTAGA TATT GA GT TTTGAGAA TCCATGACCCCTCAT TTGGT C ACAT GGGA CTTTCAGAAGGAAA CTCTGTGTATAAGGA ACAGTTTGAA CCATAACCAGGGAAAATACTATTCTAAAGAAA CC TT CACATTCAGCACGAGCGCCAAAAGGAGCA TGA TGGGAG AAACCAGGAGATTCAGCAACTCAAGCAGCTGGTTGCTCAG TACCACAGAGCACAAT TAGAAGCCTGGAGGTAAACACACTATGCACTGTCCATGCATCTTAGGCAAGCTCAGCAAGCCACACTCGATTCCACGGGCACTTCCACTCGGGAC ATCTTCTGAATAACTTCATACCTAAACCGGAGGTTTCCATAGAATGAGATATCGTTCACCC AC ATTAAGGGCAGAGTTCTTGTTCTTGGCTTATATCC ATATATTGCCAAGTTATAAACATAGTTTAATGTATGTTGTAGACCCGTGTGTACATGCTTGTCTTGCGT TGTGCTGT TGGCCCCCTAAGATGGGATTGTGTGCGAGCAAGCGC AAGAAAGCTTAGTTCATTCGAACGGCAGACAGAATATGATC AGTTAGAAAAGAAAAAAAGAAAAGAAAAGAA                                  ]
[+] EMBL BI799881             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TTGGCCCAA ATGGGGAGCTTTCAGAAGGAAAGCTCTGTGTATAAGGACACAGTTTGAA C ATAACCAGGGAAAATACTATTCTAAAGAAACCCGTTCCA ATTCAGCACGAGCGCC AAAGGAGCA TGA TGGGAG AAACCAGGAGATTCAGCAACTCAAGCAGCTGGTTGCTCAG TACC  AGAGCA AAT TAGAAGCCTGGAGGTAAACA ACTATGCCCTGTCCATGCATCTTAGGCAAGCTCAGCAAGCCA ACTCGATTCCA GGGCACTTCCA TCGGGAC ATCTTCTGAATAACTTCATACCTAAACCGGAGGTTTCCATAGAATGAGATATCGTTCACCCAACAATTAAGGGCAGAGTTCTTGTTCTTGGCTTATATCC ATATATTGCC AGTTATAAACATAGTTTAATGTATGTTGTAGACCTGTGTGTACATGCTTGTCTTGCGT TGTGCTGT TGGCCCCCTAAGATGGGATTGTGTGCGAGC AGCGC AAGAAAGCTTAGTTCATTCGAACGGCAGACAGAATATGATC AGTTAGAAAAGAAAAA                                                 ]
[+] EMBL AU093515             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CA ATTCAGCACGAGCGCCAAAAGGAGCA TGA TGGGAG AAACCAGGAGATTCAGCAACTCAAGCAGCTGGTTGCTCAG TACCA AGAGCA AAT TAGAAGCCTGGAGGTAAACA ACTATGCACTGTCCATGCATCTTAGGCAAGCTCAGCAAGCCA ACTCGATTCCA GGGCACTTCCA TCGGGAC ATCTTCTGAATAACTTCATACCTAAACCGGAGGTTTCCATAGAATGAGATATCGTTCACCCAACAATTAAGGGCAGAGTTCTTGTTCTTGGCTTATATCCAATATATTGCCAAGTTATAAACATAGTTTAATGTATGTTGTAGACCTGTGTGTACATGCTTGTCTTGCGT TGTGCTGT TGGCCCCCTAAGATGGGATTGTGTGCGAGCAAGCGCAAAGAAAGCTTAGTTCATTCGAACGGCAGACAGAATATGATCAAGTTAGAAAAGAAAAAAAAAAAAa                                         ]
[+] EMBL BI807509             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                tcaAGCACGA AGCCCAAAGGAGCATTGATTGGGAGAAAACCAGGAGATTCA CTACTCAAGCAGCTG  TGCTCAGTTACCA AGAGCG AATGTAGAAGCCTGGA GTAAACAGACTATGCACTGTCCATGCATCTTAGGCAAGCTCAGCAAGCC  ACTCGATTCCA GGGCACTTCCA TCGGGACAATCTTCTGAATAACTTCATACCTAAACCGGAGGTTTCCATAGAATGAGATATCGTTCACCC AC ATTAAGGGCAGAGTTCTTGTTCTTGGCTTATATCCAATATATTGCCAAGTTATAAACATAGTTTAATGTATGTTGTAGACCTGTGTGTACATGCTTGTCTTGCGTGTGTGCTGTGTGGCCCCCTAAGATGGGATTGTGTGCGAGC AGCGC                                                                                                            ]
[+] EMBL AU029690             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GCANCTCAAGCAGCTGGTTGCTCAG TCCCA AGAGCA AAT TAGAANCCTGGAGGTAAACA ACTATGCACTGNCCATGCATCTTAGGCAAGCTCAGCAAGCCA ACTCGATTCCA GGGCACTTCCA TCGGGAC ATCTTCTGAATAACTTCATNCCTAAACCGGAGGTTTCCATAGAATGAGATATCGTTCACCCAACAATTAAGGGCAGAGTTCTTGTTCTTNGCTTATATCCAATATATTNCCAAGTTATAAACATAGTTTAATGTATGTTGTAGACCTGTGTGTACATGCTTGTCTTGCGT TGTGCTGT TNNCCCCCTAAGATGGGATTGTGTGCGAGCAAGCGCAAAGAAAGCTTAGTTCATTCGAACGGCAGACAGAATATGATCAAGTTAGAAAAGAAAAA                                                 ]


>consensus_13663#0 CAACCATTTCTCCTGGGCCTTGCTCCGCTCCACCTCCCACCAAACCCTAACCCTAACCCT AACGCGCCTACCACGCGAGGCGCGGCGGCGGCGGCGGGCACCATGTCCGCGGCGGTGTGC GGCAAACGGGCCTCCTCCTTCTTCGAGGACCTCCCCCATTCGCCGTCCTCCCCGCCCTCC AAGCGCGCCTGCTTCCGTGGAGGTTCCTCGCCCTCCCGCCCGCTCGCCGACCCGGCCCTC GTCGCCCAGATCCGCCCGCGGTTCCCCTCCGTCGGCCTCGAGGTTATTGAGAACGCGTTG GAGGAATGTGAAAACGATTTTGATTCAGCAATAAAGTTCTTGTTCAATTTGCATGTAGGA CCCACAGAATGTAATGTGGATCCTATTTATCAATCTCCATCAGGAATGTCTACTGAGCTT CAAGTGGCTGATGAAGGTATTTTGGCTGGTAATGAAGCTGCTGTACCTATAGGAAATGCT CCCTGCGCTGATAACTTTCCATCAAGCAGCACCCAGTGGGTTGAGATTCTTGTGAACGAG ATGACTAATGCCTCTAACATGGATGATGCAAAGGCTCGTGCCTCTAGAGTATTGGAGGTG TTTGAGAAGTCCATGACCGCTCATGTTGGTGCAATGGGGAGCTTTCAGAAGGAAAGCTCT GTGTATAAGGAACAGTTTGAAGCAATAACCAGGGAAAATACTATTCTAAAGAAAGCCGTT GCAATTCAGCACGAGCGCCAAAAGGAGCATGATGGGAGAAACCAGGAGATTCAGCAACTC AAGCAGCTGGTTGCTCAGTACCAAGAGCAAATTAGAAGCCTGGAGGTAAACAACTATGCA CTGTCCATGCATCTTAGGCAAGCTCAGCAAGCCAACTCGATTCCAGGGCACTTCCATCGG GACATCTTCTGAATAACTTCATACCTAAACCGGAGGTTTCCATAGAATGAGATATCGTTC ACCCAACAATTAAGGGCAGAGTTCTTGTTCTTGGCTTATATCCAATATATTGCCAAGTTA TAAACATAGTTTAATGTATGTTGTAGACCTGTGTGTACATGCTTGTCTTGCGTTGTGCTG TTGGCCCCCTAAGATGGGATTGTGTGCGAGCAAGCGCAAAGAAAGCTTAGTTCATTCGAA CGGCAGACAGAATATGATCAAGTTAGAAAAGAAAAAAAGAAAAGAAAAGAAAAGCGAAAG AGCCTTTAAAATTATTCTCCAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)