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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13705#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 860 fasta sequence
[ACGAGGCTCCTCCGAGCTCTCCGGCGAGCCCTCCCGCCGCTATCCTCCGCGGCGGCGGGG-GTTCTCCTCCGGGGCGCGACGCGTCATGCTGCTCCTCTCCCCCTTCGTCCCCCGCCTCTTCTTCGGCTGCTGGATCCGATCGGGCTCCGCCCATTCTCCGCCGCCGCCGCCACCGCGTCGCAGGCGCCGTCCAT-GGGGCCGGCCTCTTCA-GCGGGCTCATGGACA-CCCGGTTCCCGAA-GCGGCGGCCCGGGTTCAAGTCCCGGCGGAAGAGGGCCAGCCTCCGCCCCAAAGGTCCGTACTACTGGGTGAAGTGCAAGCCTGGGGACGCCTATCCCGGCGAACCAGCCGAATGAAGGCAGTGTG-CAGGGAAGGAAGGAAAAGAAGAGGATCAAG-CAGCG-CAAGG-CCTTTATCATGGCTGAAAAAAAGAAGCGCAAAGCACAATATTCTGCTGCTGTTAAGAGAAAGGAAG-CAGAAAGGA-CAGAAAGGAAGATGGCTGCA-GTGGCCA-GAGAG-CGGG-CA-TGGA-CTGAAAGGTTGGCTGATCTTAAA-CGGATTGAAGAAGAGATGAAACCTGCGACGGCTTAAGTAGCTCCCTCGAAAATGGCA-AGAAATCTAACCCGCTTCTTCTGCTGCGTTTTGTCCCTGTTATTTTGGATGACATATATGTTCTGTGCTATTCATGGA-TGTAAAAATCCTTTGATGGGACATTAGTTGTACCGCTTCTATCAAC-AGTATTCTCAAATTTTTGTT-CCCTGTATTGGAGTATCTGTTCTATGTTGTATCTAAAATAAAAGATGTGATTTTCGTTTTGTGCCAGAGGCCAGGAATGGCCAACATGGCAACATCTGCAACCTACAAAAAAAAAA]
[+] EMBL BP184865 [ACGAGGCTCCTCCGAGCTCTCCGGCGAGCCCTCCCGCCGCTATCCTCCGCGGCGGCGGGG GTTCTCCTCCGGGGCGCGACGCGTCATGCTGCTCCTCTCCCCCTTCGTCCCCCGCCTCTTCTTCGGCTGCTGGATCCGATCGGGCTCCGCCCATTCTCCGCCGCCGCCGCCACCGCGTCGCAGGCGCCGTCCATGGGGGCCGGCCTCTTCA GCGGGCTCATGGACA CCCGGTTCCCGAA GCGGCGGCCCGGGTTCAAGTCCCGGCGGAAGAGGGCCAGCCTCCGCCCCAAAGGTCCGTACTA ]
[+] EMBL OSC25572 [ CCTCCGCGGCGGCGGGG GTTCTCCTCCGGNGCGCGACGCGTCATGCTGCTCCTCTCCCCCTTCGTCCCCCGCCTCTTCTTCGGCTGCTGGATCCGATCGGGCTCCGCCCATTCTCCGCCGCCGCCGCCACCGCGTCGCAGGCGCCGTCCATGGGGGCCGGNCTCTTCA GCGGGCTCATGGACA CCCGGTTCCCGAA GCGGCGGCCCGGGTTCAAGTCCCGGCGGAAGAGGGCCAGCCTCCGNCCCAAAGGTCCGTACTA ]
[+] EMBL OSC25061 [ CCTCCGCGGCGGCGGGGNGTTCTCCTCCGGGGCGCGACG GTCATGCTGCTCCTCTCCCCCTTCGTCCCCCGCCTCTTCTTCGGCTGCTGGATCCGATCGGGCTCCGCCCATTCTCCGCCGCCGCCGCCACCGCGTCGCAGGCGCCGTCCATGGGGGCCGGNCTCTTCA GCGGGCTCATGGACA CCCGGTTCCCGAA GCGGCGGCCCGGGTTCAAGTCCCGGCGGAAGA ]
[+] EMBL BI804058 [ GCCGTCCAT GGGTCCGCCCTCTTCATGCGGGCTCATGGACACCCCGGTTCCCGAATGCGGCGGCCCGGGTTCAAGTCCCGGCGGAAGAGGGCCAGCCTCCGCCCCAAAGGTCCGTACTACTGGGTGAAGTGCAAGCCTGGGGACGCCTATCCCGGCGAACCAGCCGAATGAAGCCAGTGTGCCAGGGAAGGAAGGAAAAGAAGAGGATCAAGCCAGCGCCAAGGCCCTTTATCATGGCTGAAAAAAAGAAGCGCCAAGCACAATATTCTGCTGCTGTTAAGAGAAAGGAAGCCAGAAAGGACCAGAAAGGAAGATGGCTCCACGTGGCCACGAGAGCCGGGCCA TGGACCTGAAAGGTTGGCTGATCTTAAACCGGATTGAAGAAGAGATGAAACCTGCGACGGCTTAAGTAGCTCCCTCGAAAATGGCACAGAAATCTAACCCGCTTCTTCTGCTGCGTTTTGTCCCTGTTATTTTGGATGACATATATGTTCTGTGCTATTCATGGA TGTAAAAATCCTTTGATGGGACATTAGTTGTACCGCTTCTATCAACAAGTATTCTCAAATTTTTGTTCCCCTGTAaaaaaaaaa ]
[+] EMBL BI804660 [ CGGCGAACCA CCGAATGAA GCAGTGTG CAGGGAAGGAAGGAAAAGAAGAGGATCAAG CAGCG CAAGG CCTTTATCATGGCTGAAAAAAAGAAGCGCAAAGCACAATATTCTGCTGCTGTTAAGAGAAAGGAAG CAGAAAGGA CAGAAAGGAAGATGGCTGCA GTGGCCA GAGAG CGGG CA TGGA CTGAAAGGTTGGCTGATCTTAAA CGGATTGAAGAAGAGATGAAACCTGCGACGGCTTAAGTAGCTCCCTCGAAAATGGCA AGAAATCTAACCCGCTTCTTCTGCTGCGTTTTGTCCCTGTTATTTTGGATGACATATATGTTCTGTGCTATTCATGGA TGTAAAAATCCTTTGATGGGACATTAGTTGTACCGCTTCTATCAAC AGTATTCTCAAATTTTTGTT CCCTGTATTGGAGTATCTGTTCTATGTTGTATCTAAAATAAAAGATGTGATTTTCGTTTTGTGCCAGAGGCCAGGAATGGCCAACATGGCAACATCTGCAAaaa ]
[+] EMBL BI803463 [ AACCAGCCGAATGAA GCAGTGT CAGGGAAGGAAGGAAAAGAAGAGGATCAAG CAGCG CAAGG CCTTTATCATGGCTGAAAAAAAGAAGCGCCAAGCACAATATTCTGCTGCTGTTAAGAGAAAGGAAG CAGAAAGGA CAGAAAGGAAGATGGCTGCA GTGGCCA GAGAG CGGG CACTGGA CTGAAAGGTTGGCTGATCTTAAA CGGATTGAAGAAGAGATGAAACCTGCGACGGCTTAAGTAGCTCCCTCGAAAATGGCC AGAAATCTAACCCGCTTCTTCTGCTGCGTTTTGTCCCTGTTATTTTGGATGACATATATGTTCTGTGCTATTCATGGA TGTAAAAATCCTTTGATGGGACATTAGTTGTACCGCTTCTATCAAC AGTATTCTCAAATTTTTGTT CCCTGTAaaaaaaaaa ]
[+] EMBL AK121734 [ AACCAGCCGAATGAAGGCAGTGTG CAGGGAAGGAAGG AAAGAAGAGGATCAAG CAGCG CAAGG CCTTTATCATGGCTGAAAAAAAGAAGCGCAAAGCACAATATTCTGCTGCTGTTAAGAGAAAGGAAG CAGAAAGGA CAGAAAGGAAGATGGCTGCA GT GCCA GAGAG CGGG CA TGGA CTGAAAGGTTGGCTGATCTTAAA CGGATTGAAGAAGAGATGAAACCTGCGACGGCTTAAGTAGCTCCCTCGAAAATGGCA AGAAATCTAACCCGTTTCTTATGCTGCGTTTTGTCCCTGTTATTTTGGATGACATATATGTTCTGTGCTATTCATGGA TGTAAAAATCCTTTGATGGGACATTAGTTGTACCGCTTCTATCAAC AGTATTCTCAAA ]
[+] EMBL C74274 [ AACCAGCCGAATGAAGGCAGTGTG CAGGGAAGGAAGGAAAAGAAGAGGATCAAG CAGCG CAAGG CCTTTATCATGGCTGANAAAAAGAAGCGCAAAGCACAATATTCTGCTGCTGTTAAGAGAAAGGAAG CAGAAAGGA CAGANAGGAAGATGGCTGCA GTGGCCA GAGAG CGGG CA TGGA CTGANAGGTTGGCTGATCTTAAA CGGATTGAAGAAGAGATGAAACCTGCGACGGCTTAAGTAACTCCCTCG AAATGGCA AGANATCTAACCCGCTTCTTCTGCTGCGTTTTGNCCNCGTAATTTTGGATGACATATATGTTCTGTGC AATCATGGA TGT AAATCCCTTGATGGGGCA ]
[+] EMBL BE040391 [ AACCAGCCGAATGAAGGCAGTGTG CAGGGAAGGAAGGAAAAGAAGAGGATCAAG CAGCG CAAGG CCTTTATCATGGCTGAAAAAAAGAAGCGCAAAGCACAATATTCTGCTGCTGTTAAGAGAAAGGAAG CAGAAAGGA CAGAAAGGAAGATGGCTGCA GTGGCCA GAGAG CGGG CA TGGA CTGAAAGGTTGGCTGATCTTAAA CGGATTGAAGAAGAGATGAAACCTGCGACGGCTTAAGTAGCTCCCTCGAAAATGGCA AGAAATCTAACCCGCTTCTTCTGCTGCGTTTTGTCCCTGTTATTTTGGATGACATATATGTTCTGTGCTATTCATAGAGTGTAAAAATCCTTTGATGGGACATTAGTTGTACCGCTTCTATCAAC AGTATTCTCAAATTTTTGTT CCCTGTATTGGAGTATCTGTTCTATGTTGTATCTAAAATAAATGATGTGATTTTCGTTTTGTGCCAGAGGCCAGGAATGGCCAACATGGCAACATCTGCAACCTACAAAAAAAA ]
[+] EMBL AK059554 [ AACCAGCCGAATGAAGGCAGTGTG CAGGGAAGGAAGGAAAAGAAGAGGATCAAG CAGCG CAAGG CCTTTATCATGGCTGAAAAAAAGAAGCGCAAAGCACAATATTCTGCTGCTGTTAAGAGAAAGGAAG CAGAAAGGA CAGAAAGGAAGATGGCTGCA GTGGCCA GAGAG CGGG CA TGGA CTGAAAGGTTGGCTGATCTTAAA CGGATTGAAGAAGAGATGAAACCTGCGACGGCTTAAGTAGCTCCCTCGAAAATGGCA AGAAATCTAACCCGCTTCTTCTGCTGCGTTTTGTCCCTGTTATTTTGGATGACATATATGTTCTGTGCTATTCATGGA TGTAAAAATCCTTTGATGGGACATTAGTTGTACCGCTTCTATCAAC AGTATTCTCAAATTTTTGTT CCCTGTATTGGAGTATCTGTTCTATGTTGTATCTAAAATAAAAGATGTGATTTTCGTTTTGTGCCAGAGGCCAGGAATGGCCAACATGG ]
[+] EMBL BI803949 [ AACCAGCCGAATGAAGGCAGTGTG CAGGGAAGGAAGGAAAAGAAGAGGATCAAG CAGCG CAAGG CCTTTATCATGGCTGAAAAAAAGAAGCGC AAGCACAATATTCTGCTGCTGTTAAGAGAAAGGAAG CAGAAAGGA CAGAAAGGAAGATGGCTGCA GTGGCCA GAGAG CGGG CA TGGA CTGAAAGGTTGGCTGATCTTAAA CGGATTGAAGAAGAGATGAAACCTGCGACGGCTTAAGTAGCTCCCTCGAAAATGGC AGAAATCTAACCCGCTTCTTCTGCTGCGTTTTGTCCCTGTTATTTTGGATGACATATATGTTCTGTGCTATTCATGGA TGTAAAAATCCTTTGATGGGACATTAGTTGTACCGCTTCTATCAAC AGTATTCTCAAATTTTTGTT CCCTGTATTGGAGTATCTGTTCTATGTTGTATCTCAAATAAAAGATGTGATTTTCGTTTaaaaaaa ]
[+] EMBL BE040509 [ GCTGCTGTTAAGAGAAAGGAAG CAGAAAGGA CAGAAAGGAAGATGGCTGCA GTGGCCA GAGAG CGGG CA TGGA CTGAAAGGTTGGCTGATCTTAAA CGGATTGAAGAAGAGATGAAACCTGCGACGGCTTAAGTAGCTCCCTCGAAAATGGCA AGAAATCTAACCCGCTTCTTCTGCTGCGTTTTGTCCCTGTTATTTTGGATGACATATATGTTCTGTGCTATTCATGGA TGTAAAAATCCTTTGATGGGACATTAGTTGTACCGCTTCTATCAAC AGTATTCTCAAATTTTTGTT CCCTGTATTGGAGTATCTGTTCTATGTTGTATCTAAAATAAATGATGTGATTTTCGTTTTGTGCCAGAGGCCAGGAATGGCCAACATGGCAACATCTGCAACCTACAAAAAAAAAA]
consensusID : consensus_13705#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 304 fasta sequence
[GTTGGCCTGAATTCTTAAACGGATTGGAAAGAAGAGATGAAACCTGCGACGGCTTAAGTAGCTCCCTCGAAAATGGCAAGAAATCTAACCCGCTTCTTCATGCTGCGTTTTGTCCCCCTGTTTATTTTTGGGGATTGGAACAATAATTAATGTTCTGTGCTATTCATGGATGTAAAAATCCTTTGATGGGACATTTAGTTGTACCGCTTCTATCAACAGTATTCTCAAATTTTTGTTCCCTGTATTGGAGTATCTGTTCTATGTTGTATTCCTAAAATAAAAGATGTGATTTTCGTTAAAAAAA]
[+] EMBL BI803419 [GTTGGCCTGAATTCTTAAACGGATTGGAAAGAAGAGATGAAACCTGCGACGGCTTAAGTAGCTCCCTCGAAAATGGCAAGAAATCTAACCCGCTTCTTCATGCTGCGTTTTGTCCCCCTGTTTATTTTTGGGGATTGGAACAATAATTAATGTTCTGTGCTATTCATGGATGTAAAAATCCTTTGATGGGACATTTAGTTGTACCGCTTCTATCAACAGTATTCTCAAATTTTTGTTCCCTGTATTGGAGTATCTGTTCTATGTTGTATTCCTAAAATAAAAGATGTGATTTTCGTTAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13705#0 ACGAGGCTCCTCCGAGCTCTCCGGCGAGCCCTCCCGCCGCTATCCTCCGCGGCGGCGGGG 60
consensus_13705#1 ------------------------------------------------------------
consensus_13705#0 GTTCTCCTCCGGGGCGCGACGCGTCATGCTGCTCCTCTCCCCCTTCGTCCCCCGCCTCTT 120
consensus_13705#1 ------------------------------------------------------------
consensus_13705#0 CTTCGGCTGCTGGATCCGATCGGGCTCCGCCCATTCTCCGCCGCCGCCGCCACCGCGTCG 180
consensus_13705#1 ------------------------------------------------------------
consensus_13705#0 CAGGCGCCGTCCATGGGGCCGGCCTCTTCAGCGGGCTCATGGACACCCGGTTCCCGAAGC 240
consensus_13705#1 ------------------------------------------------------------
consensus_13705#0 GGCGGCCCGGGTTCAAGTCCCGGCGGAAGAGGGCCAGCCTCCGCCCCAAAGGTCCGTACT 300
consensus_13705#1 ------------------------------------------------------------
consensus_13705#0 ACTGGGTGAAGTGCAAGCCTGGGGACGCCTATCCCGGCGAACCAGCCGAATGAAGGCAGT 360
consensus_13705#1 ------------------------------------------------------------
consensus_13705#0 GTGCAGGGAAGGAAGGAAAAGAAGAGGATCAAGCAGCGCAAGGCCTTTATCATGGCTGAA 420
consensus_13705#1 ------------------------------------------------------------
consensus_13705#0 AAAAAGAAGCGCAAAGCACAATATTCTGCTGCTGTTAAGAGAAAGGAAGCAGAAAGGACA 480
consensus_13705#1 ------------------------------------------------------------
consensus_13705#0 GAAAGGAAGATGGCTGCAGTGGCCAGAGAGCGGGCATGGACTGAAAGGTTGGC-TGA--T 537
consensus_13705#1 -----------------------------------------------GTTGGCCTGAATT 13
****** *** *
consensus_13705#0 CTTAAACGGATTG--AAGAAGAGATGAAACCTGCGACGGCTTAAGTAGCTCCCTCGAAAA 595
consensus_13705#1 CTTAAACGGATTGGAAAGAAGAGATGAAACCTGCGACGGCTTAAGTAGCTCCCTCGAAAA 73
************* *********************************************
consensus_13705#0 TGGCAAGAAATCTAACCCGCTTCTTC-TGCTGCGTTTTGTCCCTGT---TATTTTGGATG 651
consensus_13705#1 TGGCAAGAAATCTAACCCGCTTCTTCATGCTGCGTTTTGTCCCCCTGTTTATTTTTGGGG 133
************************** **************** * ****** * *
consensus_13705#0 AC----------ATATATGTTCTGTGCTATTCATGGATGTAAAAATCCTTTGATGGGACA 701
consensus_13705#1 ATTGGAACAATAATTAATGTTCTGTGCTATTCATGGATGTAAAAATCCTTTGATGGGACA 193
* ** ********************************************
consensus_13705#0 TT-AGTTGTACCGCTTCTATCAACAGTATTCTCAAATTTTTGTTCCCTGTATTGGAGTAT 760
consensus_13705#1 TTTAGTTGTACCGCTTCTATCAACAGTATTCTCAAATTTTTGTTCCCTGTATTGGAGTAT 253
** *********************************************************
consensus_13705#0 CTGTTCTATGTTGTAT--CTAAAATAAAAGATGTGATTTTCGTTTTGTGCCAGAGGCCAG 818
consensus_13705#1 CTGTTCTATGTTGTATTCCTAAAATAAAAGATGTGATTTTCGTTAAAAAAA--------- 304
**************** **************************
consensus_13705#0 GAATGGCCAACATGGCAACATCTGCAACCTACAAAAAAAAAA 860
consensus_13705#1 ------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||