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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13716#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1494 fasta sequence
[CTCGTGGGAGGAGCAGGCGGCGCCTGGGCGACAACGAAGCCGCCGGACCGGACCGCGGACCACATGCTGGGCCCTCTCCGCCGCGCCGCCGTGGCCGCGGGCGCGGCGTCCGCGTCGGCGGCGAGCCTCCGGCAGTTCCAGTGCGCTTACCATCGAAGCAATGAGAGATTACTGCCCTGTCG-----AGACCAAGAAGTTTCATATGGTCTTAATTGGGCTATTGCTGGAAGAGGTGTTGTTGTAAAAGATAAGGTCTTCTATAACCTGGAGAAATCGGAACTTCAGAAAGGTGGTGCTGCTTACACAGAGTGCCTGTCTGGCATTCCACTTCATGTTAGAGGAAATGTCATTAGCGGGATTCCTGATGTTTCAAGAGCTCAATTCGCAAAGCTTCTTAAACTGGTGACCTTTCATCTTTCATCGATCTCAAGTCTGTATGTCCAAGACGGTGCTGTTGGTTCCTCTGTGGAGTGTGATGCAAAGGTCCGTGTTATTAGCGATAACCCCTCTGCTGTTCTGTTGCTCTCCAATATCCTTTGGAAAACACCAGATCGTTCTATTTCCCATGACACATGCCCATTGACTATATATGTTGCCAGCTCGATAAGTGCTAATGTCAGGAATTCTCTTGGTTCTGGATCACAATACGCCAATGGATTTGCAGCAGCAGACATAGAACGCTCGTCACTTATCCTATGTGGTAAAGCATTTGCTGATTCCGCTATGCTCAAAGGTGCTCTTAGTGCTTTGACTGCCCCTGTATTATCAGCAA-GGGGAGGACTACCATTTCCT-GGGTGTACTGATGCCCTACCAGCATTATCAAAGCTTTCTCCAGGCCAGGCTGCTTACCATTTCTTAGCAGGATATTGTGATGGTAAATTTATCCCAGCTTACAGCAAGGACCCCTCCCCTCTTGACCCCATTGCCCTAGCAAATTCCTTATTTTCTCATCTGAAAGAAGATAATACACCTACTTATCTGATAAATGCCAAGAGCTCTGGAAAGTACATAGATGGCAAGGAGTTCGTGAGGCTAATAGAGGTGTTATTATCGAACAATCTGCCAGACCGCAAATCTGAAGATATTAGAGTGGGGGAATTGAAGGGAAAGTACAAGAGCTTTTTATCCAGCAAATTCGGCAAATATTTACCTAAGGAGTTCTCTTTCTGAGAATCATTATCAATGCTTTAGTGTACATTTACCACACTGGATAGGTTTACTGTCTACATTTTTAACTTGATCTGGGATTGTCACCCCTTTCTCCCTCATCTCTCAAGTCT-CAACCACAAAATACGTTACTAATACGTTATGATTTTTTTTCTTTCTCTTGGTTTTGGCATGGTTAATTAAAACTGTGCCTGTTGTAAACGAATTCCAATGTTGTGCACAGGCATGCTTGCTTTTGTGCACAGGCAAGAATTTAGTACCAGCAGGACTGCAGAAGCTTTTTGTGTATTTTTGAGCTCCAAATCGTCCAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK066893 [CTCGTGGGAGGAGCAGGCGGCGCCTGGGCGACAACGAAGCCGCCGGACCGGACCGCGGACCACATGCTGGGCCCTCTCCGCCGCGCCGCCGTGGCCGCGGGCGCGGCGTCCGCGTCGGCGGCGAGCCTCCGGCAGTTCCAGTGCGCTTACCATCGAAGCAATGAGAGATTACTGCCCTGTCG AGACCAAGAAGTTTCATATGGTCTTAATTGGGCTATTGCTGGAAGAGGTGTTGTTGTAAAAGATAAGGTCTTCTATAACCTGGAGAAATCGGAACTTCAGAAAGGTGGTGCTGCTTACACAGAGTGCCTGTCTGGCATTCCACTTCATGTTAGAGGAAATGTCATTAGCGGGATTCCTGATGTTTCAAGAGCTCAATTCGCAAAGCTTCTTAAACTGGTGACCTTTCATCTTTCATCGATCTCAAGTCTGTATGTCCAAGACGGTGCTGTTGGTTCCTCTGTGGAGTGTGATGCAAAGGTCCGTGTTATTAGCGATAACCCCTCTGCTGTTCTGTTGCTCTCCAATATCCTTTGGAAAACACCAGATCGTTCTATTTCCCATGACACATGCCCATTGACTATATATGTTGCCAGCTCGATAAGTGCTAATGTCAGGAATTCTCTTGGTTCTGGATCACAATACGCCAATGGATTTGCAGCAGCAGACATAGAACGCTCGTCACTTATCCTATGTGGTAAAGCATTTGCTGATTCCGCTATGCTCAAAGGTGCTCTTAGTGCTTTGACTGCCCCTGTATTATCAGCAA GGGGAGGACTACCATTTCCT GGGTGTACTGATGCCCTACCAGCATTATCAAAGCTTTCTCCAGGCCAGGCTGCTTACCATTTCTTAGCAGGATATTGTGATGGTAAATTTATCCCAGCTTACAGCAAGGACCCCTCCCCTCTTGACCCCATTGCCCTAGCAAATTCCTTATTTTCTCATCTGAAAGAAGATAATACACCTACTTATCTGATAAATGCCAAGAGCTCTGGAAAGTACATAGATGGCAAGGAGTTCGTGAGGCTAATAGAGGTGTTATTATCGAACAATCTGCCAGACCGCAAATCTGAAGATATTAGAGTGGGGGAATTGAAGGGAAAGTACAAGAGCTTTTTATCCAGCAAATTCGGCAAATATTTACCTAAGGAGTTCTCTTTCTGAGAATCATTATCAATGCTTTAGTGTACATTTACCACACTGGATAGGTTTACTGTCTACATTTTTAACTTGATCTGGGATTGTCACCCCTTTCTCCCTCATCTCTCAAGTCT CAACCACAAAATACGTTACTAATACGTTATGATTTTTTTTCTTTCTCTTGGTTTTGGCATGGTTAATTAAAACTGTGCCTGTTGTAAACGAATTCCAATGTTGTGCACAGGCATGCTTGCTTTTGTGCACAGGCAAGAATTTAGTACCAGCAGGACTGCAGAAG ]
[+] EMBL CB639900 [ GCGCCTGGGCGACAACGAAGCCGCCGGACCGGACCGCGGACCACATGCTGGGCCCTCTCCGCCGCGCCGCCGTGGCCGCGGGCGCGGCGTCCGCGTCGGCGGCGAGCCTCCGGCAGTTCCAGTGCGCTTACCATCGAAGCAATGAGAGATTACTGCCCTGTCGAGAGAAGACCAAGAAGTTTCATATGGTCTTAATTGG ]
[+] EMBL CB636238 [ GCGCCTGGGCGACAACGAAGCCGCCGGACCGGACCGCGGACCACATGCTGGGCCCTCTCCGCCGCGCCGCCGTGGCCGCGGGCGCGGCGTCCGCGTCGGCGGCGAGCCTCCGGCAGTTCCAGTGCGCTTACCATCGAAGCAATGAGAGATTACTGCCCTGTCGAGAGAAGACCAAGAAGTTTCATATGGTCTTAATTGGGCTATTGCTGGAAGAGGTGTTGTTGTAAAAGATAAGGTCTTCTATAACCTGGAGAAATCGGAACTTCAGAAAGGTGGTGCTGCTTACACAGAGTGCCTGTCTGGCATTCCACTTCATGTTAGAGGAAATGTCATTAGCGGGATTCCTGATGTTTCAAGAGCTCAATTCGCAAAGCTTCTTAAACTGGTGACCTTTCATCTTTCATCGATCTCAAGTCTGTATGTCCAAGACGGTGCTGTCGGTTCCTCTGTGGAGTGTGATGCAAAGGTCCGTGTTATTAG ]
[+] EMBL CB636169 [ GCGCCTGGGCGACAACGAAGCCGCCGGACCGGACCGCGGACCACATGCTGGGCCCTCTCCGCCGCGCCGCCGTGGCCGCGGGCGCGGCGTCCGCGTCGGCGGCGAGCCTCCGGCAGTTCCAGTGCGCTTACCATCGAAGCAATGAGAGATTACTGCCCTGTCGAGAGAAGACCAAGAAGTTTCATATGGTCTTAATTGGGCTATTGCTGGAAGAGGTGTTGTTGTAAAAGATAAGGTCTTCTATAACCTGGAGAAATCGGAACTTCAGAAAGGTGGTGCTGCTTACACAGAGTGCCTGTCTGGCATTCCACTTCATGTTAGAGGAAATGTCATTAGCGGGATTCCTGATGTTTCAAGAGCTCAATTCGCAAAGCTTCTTAAACTGGTGACCTTTCATCTTTCATCGATCTCAAGTCTGTATGTCCAAGACGGTGCTGTTGGTTCCTCTGTGGAGTGTGATGCAAAGGTCCGTGTTATTAGCGATAACCCCTCTGCTGTTCTGTTGCTCTCCAATATCCTTTGGAAAACACCAGATCGTTCTATTTNCCATGACACAT ]
[+] EMBL CF320054 [ ATTGCTGGAAGAGGTGTTGTTGTAAAAGATAAGGTCTTCTATAACCTGGAGAAATCGGAACTTCAGAAAGGTGGTGCTGCTTACACAGAGTGCCTGTCTGGCATTCCACTTCATGTTAGAGGAAATGTCATTAGCGGGATTCCTGATGTTTCAAGAGCTCAATTCGCAAAGCTTCTTAAACTGGTGACCTTTCATCTTTCATCGATCTCAAGTCTGTATGTCCAAGACGGTGCTGTTGGTTCCTCTGTGGAGTGTGATGC AAGGTCCGTGTTATTAGCGATAACCCCTCTGCTGTTCTGTTGCTCTCCAATATCCTTTGGAAAACACCAGATCGTTCTATTTCCCATGACACATGCCCATTGACTATATATGTTGCCAGCTCGATAAGTGCTAATGTCAGGAATTCTCTTGGTTCTGGATCACAATACGCCAATGGATTTGCAGCAGCAGACATAGAACGCTCGTCACTTATCCTATGTGGTAAAGCATTTGCTGATTCCGCTATGCTCAAAGGTGCTCTTAGTGCTTTGACTGCCCCTGTATTATCAGCAAGGGGGAGGACTACCATTTCCTGGGGTGTACTGATGCCCTACCAGCATTATCAAAGCTTTCTCCAGGCCAGGCTGC ]
[-] EMBL CB636170 [ GTGATGGTAAATTTATCCCAGCTTACAGCAAGGACCCCTCCCCTCTTGACCCCATTGCCCTAGCAAATTCCTTATTTTCTCATCTGAAAGAAGATAATACACCTACTTATCTGATAAATGCCAAGAGCTCTGGAAAGTACATAGATGGCAAGGAGTTCGTGAGGCTAATAGAGGTGTTATTATCGAACAATCTGCCAGACCGCAAATCTGAAGATATTAGAGTGGGGGAATTGAAGGGAAAGTACAAGAGCTTTTTATCCAGCAAATTCGGCAAATATTTACCTAAGGAGTTCTCTTTCTGAGAATCATTATCAATGCTTTAGTGTACATTTACCACACTGGATAGGTTTACTGTCTACATTTTTAACTTGATCTGGGATTGTCACCCCTTTCTCCCTCATCTCTCAAGTCT CAACCACAAAATACGTTACTAATACGTTATGATTTTTTTTCTTTCTCTTGGTTTTGGCATGGTTAATTAAAACTGTGCCTGTTGTAAACGAATTCCAATGTTGTGCACAGGCATGCTTGCTTTTGTGCACAGGCAAGAATTTAGTACCAGCAGGACTGCAGAAGC ]
[-] EMBL CB636840 [ GGCAAGGAGTTCGTGAGGATAATAGAGGTGTTATTATCGAACAATTTGCCAGACCGCAAATTTGAAGATATTAGAGTGGGGGAATTGAAGGGAAAGTACAAGAGCTTTTTATCCAGCAAATTCGGCAAATATTTACCTAAGGAGTTCTCTTTGTGAGAATCATTATCAATGCTTTAGTGTACATTTACCACACTGGATAGGTTTACTGTCTACATTTTTAACTTGATCTGGGATTGTCACCCCTTTCTCCATCATCTTTCAAGTCTAAAAACA AAAATACGTTACTAATACGTTATGATTTTTTTTCTTTCTCTTGGTTTTGGCATGGTTAATTAAAACTGTGCCTGTTGTAAACGAATTCCAATGTTGTGCACAGGCATGCTTGCTTTTGTGCACAGGCAATAATTTAGTACCAGCAGGACT AAAAAG TTTTTGT ]
[-] EMBL CF320055 [ AGAGTGGGGGAATTGAAGGGAAAGTACAAGAGCTTTTTATCCAGCAAATTCGGCAAATATTTACCTAAGGAGTTCTCTTTTTGAGAATCATTATCAATGCTTTAGTGTACATTTACCACACTGGATAGGTTTACTGTCTACATTTTTAACTTGATCTGGGATTGTCACCCCTTTTTCCCTCATTTTTCAAGTTT CAACCACAAAATACGTTACTAATACGTTATGATTTTTTTTCTTTCTCTGGGTTTGGGCATGGTTAATTAAAACTGTGCCTGTTGTAAACGAATTCCAATGTTGTGCACAGGCATGCTTGCTTTTGTGCACAGGCAAGAATTTAGTACCAGCAGGACTGCAGAAGCTTTCTGTGTATTTTTGAGCTCCAAATCGTCCAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_13716#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 818 fasta sequence
[TGGGAGGAGCAGGCGGCGCCTGGGCGACAACGAAGCCGCCGGACCGGACCGCGGACCACATGCTGGGCCCTCTCCGCCGCGCCGCCGTGGCCGCGGGCGCGGCGTCCGCGTCGGCGGCGAGCCTCCGGCAGTTCCAGTGCGCTTACCATCGAAGCAATGAGAGATTACTGCCCTGTCGAGGTAAGCGTGGCCATACCATACACTTTTCATCCTATATATGCTTGTAAACTCTGATTTTTTATTTTTTACACAAAACACAATGTTCTACTGTGCAAGATCACATGATGACTTTTTTAGATGGTGGATAGAATCTGGCCTCTATATCCACAAGGGGATATACACAGCCAATTACATGATGACCTGACGACTTGATTACATTGTTTGGTGTTTCGTCTACCAAGTTAGATGTTCGGTTCATTCAAATTGCACCAGTCAATACAAACAAAATATTTGAACTACTTTAATGTACTATTTGTTGCACAGAGAAGACCAAGAAGTTTCATATGGTCTTAATTGGGCTATTGCTGGAAGAGGTGTTGTTGTAAAAGATAAGGTCTTCTATAACCTGGAGAAATCGGAACTTCAGAAAGGTGGTGCTGCTTACACAGGTATGTGAGTATATGTATTATGCGTACATACAATTGATATGATTGATGCTAATGTAGAACTTGTTACCTTCTTCTGGGCATGGAGAGTGCCTGTCTGGCATTCCACTTCATGTTAGAGGAAATGTCATTGGCGGGATTCCTGATGTTTCAAGAGCTCAATTCGCAAAGCTTCTTAAACTGGTGACCTTTCATCTTTCATCTATCTNCAGT]
[+] EMBL CB620225 [TGGGAGGAGCAGGCGGCGCCTGGGCGACAACGAAGCCGCCGGACCGGACCGCGGACCACATGCTGGGCCCTCTCCGCCGCGCCGCCGTGGCCGCGGGCGCGGCGTCCGCGTCGGCGGCGAGCCTCCGGCAGTTCCAGTGCGCTTACCATCGAAGCAATGAGAGATTACTGCCCTGTCGAGGTAAGCGTGGCCATACCATACACTTTTCATCCTATATATGCTTGTAAACTCTGATTTTTTATTTTTTACACAAAACACAATGTTCTACTGTGCAAGATCACATGATGACTTTTTTAGATGGTGGATAGAATCTGGCCTCTATATCCACAAGGGGATATACACAGCCAATTACATGATGACCTGACGACTTGATTACATTGTTTGGTGTTTCGTCTACCAAGTTAGATGTTCGGTTCATTCAAATTGCACCAGTCAATACAAACAAAATATTTGAACTACTTTAATGTACTATTTGTTGCACAGAGAAGACCAAGAAGTTTCATATGGTCTTAATTGGGCTATTGCTGGAAGAGGTGTTGTTGTAAAAGATAAGGTCTTCTATAACCTGGAGAAATCGGAACTTCAGAAAGGTGGTGCTGCTTACACAGGTATGTGAGTATATGTATTATGCGTACATACAATTGATATGATTGATGCTAATGTAGAACTTGTTACCTTCTTCTGGGCATGGAGAGTGCCTGTCTGGCATTCCACTTCATGTTAGAGGAAATGTCATTGGCGGGATTCCTGATGTTTCAAGAGCTCAATTCGCAAAGCTTCTTAAACTGGTGACCTTTCATCTTTCATCTATCTNCAGT]
[+] EMBL CB636839 [ GCAGGCGGCGCCTGGGCGACAACGAAGCCGCCGGACCGGACCGCGGACCACATGCTGGGCCCTCTCCGCCGCGCCGCCGTGGCCGCGGGCGCGGCGTCCGCGTCGGCGGCGAGCCTCCGGCAGTTCCAGTGCGCTTACCATCGAAGCAATGAGAGATTACTGCCCTGTCGAGGTAAGCGTGGCCATACCATACACTTTTCATCCTATATATGCTTGTAAACTCTGATTTTTTATTTTTTACACAAAACACAATGTTCTACTGTGCAAGATCACATGATGACTTTTTTAGATGGTGGATAGAATCTGGCCTCTATATCCACAAGGGGATATACACAGCCAATTACATGATGACCTGACGACTTGATTACATTGTTTGGTGTTTCGTCTACCAAGTTAGATGTTCGGTTCATTCGAATTGCACCAGTCAATACAAACAAAATATTTGAACTACTTTAATGTACTATTTGTTGCACAGAGAAGACCAAGAAGTTTCATATGGTCTTAATTGGGC ]
consensusID : consensus_13716#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence
[TTGTTTACCAGACCAACTCAAGTTATTATTGTATCATCGGATAGTACTGATGCCCTACCAGCATTATCAAAGCTTTCTCCAGGCCAGGCTGCTTACCATTTCTTAGCAGGATATTGTGATGGTAAATTTATCCCAGCTTACAGCAAGGACCCCTCCCCTCTTGACCCCATTGCCCTAGCAAATTCCTTATTTTCTCATCTGAAAGAAGATAATACACCTACTTATCTGATAAATGCCAAGAGCTCTGGAAAGTACATAGATGGCAAGGAGTTCGTGAGGCTAATAGAGGTGTTATTATCGAACAATCTGCCAGACCGCAAATCTGAAGATATTAGAGTGGGGGAATTGAAGGGAAAGTCCAAGAGCTTTTTATCCAGCAAATTCGGCAAATATTTCCCTAAGGAGTTCTCTTTCTGAGAATCATTATCAATGCTTTAGTGTACATTTACCACACTGGATAGGTTTACTGTCTACATTTTTAACTTGATCTGGGATTGTCACCCCTTTCTCCCTCATCTCTCAAGTCTCAACCACAAAATACGTTACTAATACGTTATGATTTTTTTTCTTTCTCTGGGTTTTGGCATGGTTAATTAAAACTGTCCCTGTTGTAAACGAATTCCAATGTTGTGCACAGGCATGCTAAAAGGGGTGCACAGGCAAGAATTTAGTCCCAAAAAAACCATAAA]
[-] EMBL CB620226 [TTGTTTACCAGACCAACTCAAGTTATTATTGTATCATCGGATAGTACTGATGCCCTACCAGCATTATCAAAGCTTTCTCCAGGCCAGGCTGCTTACCATTTCTTAGCAGGATATTGTGATGGTAAATTTATCCCAGCTTACAGCAAGGACCCCTCCCCTCTTGACCCCATTGCCCTAGCAAATTCCTTATTTTCTCATCTGAAAGAAGATAATACACCTACTTATCTGATAAATGCCAAGAGCTCTGGAAAGTACATAGATGGCAAGGAGTTCGTGAGGCTAATAGAGGTGTTATTATCGAACAATCTGCCAGACCGCAAATCTGAAGATATTAGAGTGGGGGAATTGAAGGGAAAGTCCAAGAGCTTTTTATCCAGCAAATTCGGCAAATATTTCCCTAAGGAGTTCTCTTTCTGAGAATCATTATCAATGCTTTAGTGTACATTTACCACACTGGATAGGTTTACTGTCTACATTTTTAACTTGATCTGGGATTGTCACCCCTTTCTCCCTCATCTCTCAAGTCTCAACCACAAAATACGTTACTAATACGTTATGATTTTTTTTCTTTCTCTGGGTTTTGGCATGGTTAATTAAAACTGTCCCTGTTGTAAACGAATTCCAATGTTGTGCACAGGCATGCTAAAAGGGGTGCACAGGCAAGAATTTAGTCCCAAAAAAACCATAAA]
consensusID : consensus_13716#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence
[CGGGATATTGGGAGGGTAAATTTTTCCCAGCTTACAGCAAGGGCCCCTCCCCTTTTGACCCCATTGCCCTAGCAAATTCCTTTTTTTTTCTTTTGAAAGAAGATAATCCCCCTACTTTTTTGATAAATGCCAAGGGTTTTGGAAAGTACATAGATGGCAAGGAGTTTGGGGGGTTAATAGGGGGGTTTTTTTTGAACAATTTGCCGGCCCGCAAATTTGAAGATATTAGAGGGGGGGAATTGAAGGGAAAGTCCAAGAGCTTTTTTTCCAGCAAATTGGGCAAATATTTCCCTAGGGGGTTTTTTTTTTGGGAATCATTTTCAATGCTTTAGGGTCCATTTCCCCCCCGGGATAGGTTTTCGGTTTCCATTTTTAACTTGTTTTGGGGTTGTCCCCCCTTTTTCCCTCATTTTTCAAGTTTCACCCCCAAAATACGTTATTAATACGTTAGGGTTTTTTTTTTTTTTTTTGGTTTTGGCAGGGTTAATTAAAACTGTGCCTGTTGTAAAGGAATTCCAATGTTGTGCCCAGGCATGTTAGTTTTTGTGCCCAGGCAAGAATTTTGTGCCCCCAGGGCTGCAGAAGC]
[-] EMBL CB631850 [CGGGATATTGGGAGGGTAAATTTTTCCCAGCTTACAGCAAGGGCCCCTCCCCTTTTGACCCCATTGCCCTAGCAAATTCCTTTTTTTTTCTTTTGAAAGAAGATAATCCCCCTACTTTTTTGATAAATGCCAAGGGTTTTGGAAAGTACATAGATGGCAAGGAGTTTGGGGGGTTAATAGGGGGGTTTTTTTTGAACAATTTGCCGGCCCGCAAATTTGAAGATATTAGAGGGGGGGAATTGAAGGGAAAGTCCAAGAGCTTTTTTTCCAGCAAATTGGGCAAATATTTCCCTAGGGGGTTTTTTTTTTGGGAATCATTTTCAATGCTTTAGGGTCCATTTCCCCCCCGGGATAGGTTTTCGGTTTCCATTTTTAACTTGTTTTGGGGTTGTCCCCCCTTTTTCCCTCATTTTTCAAGTTTCACCCCCAAAATACGTTATTAATACGTTAGGGTTTTTTTTTTTTTTTTTGGTTTTGGCAGGGTTAATTAAAACTGTGCCTGTTGTAAAGGAATTCCAATGTTGTGCCCAGGCATGTTAGTTTTTGTGCCCAGGCAAGAATTTTGTGCCCCCAGGGCTGCAGAAGC]
consensusID : consensus_13716#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 252 fasta sequence
[CCCTCTCACGAGCAACAGGGCAATGGCGGCGGCAGTGGCTCCCACGAGCGGCGGTGTCTGCGCCNCGCCGCCGTGGCCGCGGGCGCGGCGTCCGCGTCGGCGGCGAGCCTCCGGCAGTTCCAGTGCGCTTACCATCGAAGCAATGAGAGATTACTGCCCTGTCGAGAGAAGACCAATTATTTTCATATGGTCTTAATTGGGCTATTGCTGGAAGAGGTGTTGTTGTAAAAGATAAGGTCTTCTATAACCTGG]
[+] EMBL CB639901 [CCCTCTCACGAGCAACAGGGCAATGGCGGCGGCAGTGGCTCCCACGAGCGGCGGTGTCTGCGCCNCGCCGCCGTGGCCGCGGGCGCGGCGTCCGCGTCGGCGGCGAGCCTCCGGCAGTTCCAGTGCGCTTACCATCGAAGCAATGAGAGATTACTGCCCTGTCGAGAGAAGACCAATTATTTTCATATGGTCTTAATTGGGCTATTGCTGGAAGAGGTGTTGTTGTAAAAGATAAGGTCTTCTATAACCTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13716#2 ------------------------------------------------------------
consensus_13716#3 ------------------------------------------------------------
consensus_13716#0 CTCGTGGGAGGAGCAGGCGGCGCCTGGGCGACAACGAAGCCGCCGGACCGGACCGCGGAC 60
consensus_13716#1 ------------------------------------------------------------
consensus_13716#4 ------------------------------------------------------------
consensus_13716#2 ------------------------------------------------------------
consensus_13716#3 ------------------------------------------------------------
consensus_13716#0 CACATGCTGGGCCCTCTCCGCCGCGCCGCCGTGGCCGCGGGCGCGGCGTCCGCGTCGGCG 120
consensus_13716#1 ------------------------------------------------------------
consensus_13716#4 ------------------------------------------------------------
consensus_13716#2 ------------------------------------------------------------
consensus_13716#3 ------------------------------------------------------------
consensus_13716#0 GCGAGCCTCCGGCAGTTCCAGTGCGCTTACCATCGAAGCAATGAGAGATTACTGCCCTGT 180
consensus_13716#1 ------------------------------------------------------------
consensus_13716#4 ------------------------------------------------------------
consensus_13716#2 ------------------------------------------------------------
consensus_13716#3 ------------------------------------------------------------
consensus_13716#0 CGAGACCAAGAAGTTTCATATGGTCTTAATTGGGCTATTGCTGGAAGAGGTGTTGTTGTA 240
consensus_13716#1 ------------------------------------------------------------
consensus_13716#4 ------------------------------------------------------------
consensus_13716#2 ------------------------------------------------------------
consensus_13716#3 ------------------------------------------------------------
consensus_13716#0 AAAGATAAGGTCTTCTATAACCTGGAGAAATCGGAACTTCAGAAAGGTGGTGCTGCTTAC 300
consensus_13716#1 ------------------------------------------------------------
consensus_13716#4 ------------------------------------------------------------
consensus_13716#2 ------------------------------------------------------------
consensus_13716#3 ------------------------------------------------------------
consensus_13716#0 ACAGAGTGCCTGTCTGGCATTCCACTTCATGTTAGAGGAAATGTCATTAGCGGGATTCCT 360
consensus_13716#1 ------------------------------------------------------------
consensus_13716#4 ------------------------------------------------------------
consensus_13716#2 ------------------------------------------------------------
consensus_13716#3 ------------------------------------------------------------
consensus_13716#0 GATGTTTCAAGAGCTCAATTCGCAAAGCTTCTTAAACTGGTGACCTTTCATCTTTCATCG 420
consensus_13716#1 ------------------------------------------------------------
consensus_13716#4 ------------------------------------------------------------
consensus_13716#2 ------------------------------------------------------------
consensus_13716#3 ------------------------------------------------------------
consensus_13716#0 ATCTCAAGTCTGTATGTCCAAGACGGTGCTGTTGGTTCCTCTGTGGAGTGTGATGCAAAG 480
consensus_13716#1 ------------------------------------------------------------
consensus_13716#4 ------------------------------------------------------------
consensus_13716#2 ------------------------------------------------------------
consensus_13716#3 ------------------------------------------------------------
consensus_13716#0 GTCCGTGTTATTAGCGATAACCCCTCTGCTGTTCTGTTGCTCTCCAATATCCTTTGGAAA 540
consensus_13716#1 ------------------------------------------------------------
consensus_13716#4 ------------------------------------------------------------
consensus_13716#2 ------------------------------------------------------------
consensus_13716#3 ------------------------------------------------------------
consensus_13716#0 ACACCAGATCGTTCTATTTCCCATGACACATGCCCATTGACTATATATGTTGCCAGCTCG 600
consensus_13716#1 ------------------------------------------------------------
consensus_13716#4 ------------------------------------------------------------
consensus_13716#2 ------------------------------------------------------------
consensus_13716#3 ------------------------------------------------------------
consensus_13716#0 ATAAGTGCTAATGTCAGGAATTCTCTTGGTTCTGGATCACAATACGCCAATGGATTTGCA 660
consensus_13716#1 ------------------------------------------------------------
consensus_13716#4 ------------------------------------------------------------
consensus_13716#2 ------------------------------------------------------------
consensus_13716#3 ------------------------------------------------------------
consensus_13716#0 GCAGCAGACATAGAACGCTCGTCACTTATCCTATGTGGTAAAGCATTTGCTGATTCCGCT 720
consensus_13716#1 ------------------------------------------------------------
consensus_13716#4 ------------------------------------------------------------
consensus_13716#2 ------------------------------TTGTTTACCAGACCAACTCAAGTTATTATT 30
consensus_13716#3 ------------------------------------------------------------
consensus_13716#0 ATGCTCAAAGGTGCTCTTAGTGCTTTGACTGCCCCTGTATTATCAGCAAGGGGAGGACTA 780
consensus_13716#1 ---------------TGGGAGGAGCAGGCGGCGCCTGGGCGACAACGAAGCCGCCGGACC 45
consensus_13716#4 ---------------------------CCCTCTCACGAGCAACAGGGCAATGGC--GGCG 31
consensus_13716#2 GTATCATCGGATAGTACTGATGCCCTACCAGCATTATCAAAGCTTTCTCCAGGCCAGGCT 90
consensus_13716#3 ------------------------------------------------------------
consensus_13716#0 CCATTTCCTGGGTGTACTGATGCCCTACCAGCATTATCAAAGCTTTCTCCAGGCCAGGCT 840
consensus_13716#1 GGACCGCGGACCACATGCTGGGCCCTCTCCGCCGCGCCGCCGTGGCCGCGGGCGCGGCGT 105
consensus_13716#4 GCAGTGGCTCCCACGAGCGGCGGTGTCTGCGCCNCGCCGCCGTGGCCGCGGGCGCGGCGT 91
consensus_13716#2 GCTTACCATTTCTTAGCAGGATATTGTGATGGTAAATTTATCCCAGCTTACAGCAAGGAC 150
consensus_13716#3 ----------------CGGGATATTGGGAGGGTAAATTTTTCCCAGCTTACAGCAAGGGC 44
consensus_13716#0 GCTTACCATTTCTTAGCAGGATATTGTGATGGTAAATTTATCCCAGCTTACAGCAAGGAC 900
consensus_13716#1 CCGCGTCGGCGGCGAGCCTCCGGCAGTTCCAGTGCGCTTACCATCGAAGCAATGAGAGAT 165
consensus_13716#4 CCGCGTCGGCGGCGAGCCTCCGGCAGTTCCAGTGCGCTTACCATCGAAGCAATGAGAGAT 151
* * ** ** * * * * *
consensus_13716#2 CCCTCCCCTCTTGA------CCCCATTGCCCTAGCAAATTCCTTATTTTCTCATCTGAAA 204
consensus_13716#3 CCCTCCCCTTTTGA------CCCCATTGCCCTAGCAAATTCCTTTTTTTTTCTTTTGAAA 98
consensus_13716#0 CCCTCCCCTCTTGA------CCCCATTGCCCTAGCAAATTCCTTATTTTCTCATCTGAAA 954
consensus_13716#1 TACTGCCCTGTCGAGGTAAGCGTGGCCATAC-CATACACTTTTCATCCTATATATGCTTG 224
consensus_13716#4 TACTGCCCTGTCGAGAGAAGACCAATTATTTTCATATGGTCTTAATTGGGC-TATTGCTG 210
** **** * ** * * * *
consensus_13716#2 GAAGATAATACACCTACTTATCTGATAAATGCCAAGAGCTCTGGAAAGTACA--TAGATG 262
consensus_13716#3 GAAGATAATCCCCCTACTTTTTTGATAAATGCCAAGGGTTTTGGAAAGTACA--TAGATG 156
consensus_13716#0 GAAGATAATACACCTACTTATCTGATAAATGCCAAGAGCTCTGGAAAGTACA--TAGATG 1012
consensus_13716#1 TAAACTCTGATTTTTTATTTTTTACACAAAACACAATGTTCTACTGTGCAAGATCACATG 284
consensus_13716#4 GAAGAGGTG---------TTGTTGTAAAAGATAAGGTCTTCTATAACCTGG--------- 252
** * * ** * *
consensus_13716#2 GCAAGGAGTTCGTGAGGCTAATAGAGGTGTTATTATCGAACAATCTGCCAGACCGCAAAT 322
consensus_13716#3 GCAAGGAGTTTGGGGGGTTAATAGGGGGGTTTTTTTTGAACAATTTGCCGGCCCGCAAAT 216
consensus_13716#0 GCAAGGAGTTCGTGAGGCTAATAGAGGTGTTATTATCGAACAATCTGCCAGACCGCAAAT 1072
consensus_13716#1 ATGACTTTTTTAGATGGTGGATAGAATCTGGCCTCTATATCCACAAGGGGATATACACAG 344
consensus_13716#4 ------------------------------------------------------------
consensus_13716#2 CTGAAGATATTA-GAGTGGGGGAATTGAAGGGAAAGTCCAAGAGCTT-TTTATCCAGCAA 380
consensus_13716#3 TTGAAGATATTA-GAGGGGGGGAATTGAAGGGAAAGTCCAAGAGCTT-TTTTTCCAGCAA 274
consensus_13716#0 CTGAAGATATTA-GAGTGGGGGAATTGAAGGGAAAGTACAAGAGCTT-TTTATCCAGCAA 1130
consensus_13716#1 CCAATTACATGATGACCTGACGACTTGATTACATTGTTTGGTGTTTCGTCTACCAAGTTA 404
consensus_13716#4 ------------------------------------------------------------
consensus_13716#2 ATTCGGCAAATATTTCCCTAAGGAGTTCTCTTTCTGAG--AATCATTATCAATGCTTTAG 438
consensus_13716#3 ATTGGGCAAATATTTCCCTAGGGGGTTTTTTTTTTGGG--AATCATTTTCAATGCTTTAG 332
consensus_13716#0 ATTCGGCAAATATTTACCTAAGGAGTTCTCTTTCTGAG--AATCATTATCAATGCTTTAG 1188
consensus_13716#1 GATGTTCGGTTCATTCAAATTGCACCAGTCAATACAAACAAAATATTTGAACTACTTTAA 464
consensus_13716#4 ------------------------------------------------------------
consensus_13716#2 TGTAC-ATTTACCACACTGGATAGGTTTACTGTCTACATTT---TTAACTTGATCTGGGA 494
consensus_13716#3 GGTCC-ATTTCCCCCCCGGGATAGGTTTTCGGTTTCCATTT---TTAACTTGTTTTGGGG 388
consensus_13716#0 TGTAC-ATTTACCACACTGGATAGGTTTACTGTCTACATTT---TTAACTTGATCTGGGA 1244
consensus_13716#1 TGTACTATTTGTTGCACAGAGAAGACCAAGAAGTTTCATATGGTCTTAATTGGGCTATTG 524
consensus_13716#4 ------------------------------------------------------------
consensus_13716#2 TTGTCACCCCTTTCTCCCTCATCTCTCAAGTCTC--AACCACAAAATACGTTACTAATAC 552
consensus_13716#3 TTGTCCCCCCTTTTTCCCTCATTTTTCAAGTTTC--ACCCCCAAAATACGTTATTAATAC 446
consensus_13716#0 TTGTCACCCCTTTCTCCCTCATCTCTCAAGTCTC--AACCACAAAATACGTTACTAATAC 1302
consensus_13716#1 CTGGAAGAGGTGTTGTTGTAAAAGATAAGGTCTTCTATAACCTGGAGAAATCGGAACTTC 584
consensus_13716#4 ------------------------------------------------------------
consensus_13716#2 GTTATGATTTTTTTTCTTTCTCTGGGTTTTGGCATGGTTAATTAAAACTGTCCCTGTTGT 612
consensus_13716#3 GTTAGGGTTTTTTTTTTTTTTTTTGGTTTTGGCAGGGTTAATTAAAACTGTGCCTGTTGT 506
consensus_13716#0 GTTATGATTTTTTTTCTTTCTCTTGGTTTTGGCATGGTTAATTAAAACTGTGCCTGTTGT 1362
consensus_13716#1 AGAAAGGTGGTGCTGCTTACACAGGTATGTGAGTATATGTATTATGCGTACATACAATTG 644
consensus_13716#4 ------------------------------------------------------------
consensus_13716#2 AAACGAATTCCAATGTTGTGCACAGGCATGCTAAAAGGGGTGCACAGGCAAGAATTTAGT 672
consensus_13716#3 AAAGGAATTCCAATGTTGTGCCCAGGCATGTTAGTTTTTGTGCCCAGGCAAGAATTTTGT 566
consensus_13716#0 AAACGAATTCCAATGTTGTGCACAGGCATGCTTGCTTTTGTGCACAGGCAAGAATTTAGT 1422
consensus_13716#1 ATATGATTGATGCTAATGTAGAACTTGTTACCTTCTTCTGGGCATGGAGAGTGCCTGTCT 704
consensus_13716#4 ------------------------------------------------------------
consensus_13716#2 CCCAAAAAAACCATAAA------------------------------------------- 689
consensus_13716#3 GCCCCCAGGGCTGCAGAAGC---------------------------------------- 586
consensus_13716#0 ACCAGCAGGACTGCAGAAGCTTTTTGTGTATTTTTGAGCTCCAAATCGTCCAAAAAAAAA 1482
consensus_13716#1 GGCATTCCACTTCATGTTAGAGGAAATGTCATTGGCGGGATTCCTGATGTTTCAAGAGCT 764
consensus_13716#4 ------------------------------------------------------------
consensus_13716#2 ------------------------------------------------------
consensus_13716#3 ------------------------------------------------------
consensus_13716#0 AAAAAAAAAAAA------------------------------------------ 1494
consensus_13716#1 CAATTCGCAAAGCTTCTTAAACTGGTGACCTTTCATCTTTCATCTATCTNCAGT 818
consensus_13716#4 ------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||