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Oryza sativa
cluster # 13752 cluster # 13752       Sequences # 14       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13752#0 length = 1518 sequences # 6  
consensus_13752#1 length = 1380 sequences # 6  
consensus_13752#2 length = 486 sequences # 2  

consensusID : consensus_13752#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1518
fasta sequence
                              [CCTCCCCCGTNTCCTTCTCCGGTCGGTTTCCCAACCCGAGAGGGCCTCGCCGCCATTGCCGCCTCGCTCCTCGTCTCGCGGGAACGCCGCCGCCGCCGCCGCCGCCATTAGGGCTTAGGGCTCAGGAGGCTCGCGGCGATGTGGTGGAGGGCCGCGAGGGCTCGCCGGCGGATCGCCGGGGCGCGGGCGGCGTCCACGTNGGCGGCGGCGGCGGGGGAGAAGAGCTGCCGCGCCGTGGTGGTGCCTCGGTTCGGAGGGCCGGAGGTGCTGGAGGTGAGGCAGGGGGTGCCGGTGCCCGATCTGAAGCCGGGGGATGTGCTCGTGCGCGCGCGGGCCGTCTCCATCAACCCTCTGGACCTGCGAATGCGGTCTGGTTATGGGCGTTCAATATTTGAGCCAGTCCTACCTCTGATCATTGGCCGGGATATAAGTGGTGAAGTTGCAGCTACAGGGACTTCTGTGTCGTCCTTTACTATTGGGCAAGAAGTGTTTGGTGCTTTGCATCCAACAGCCATAAGAGGGACATACACCGATTATGCAATTCTTTCACAGGATGAGCTTACTTCCAAACCATCTACACTCAGTCATGTGGAGGCTAGCGCTATACCATTTGCTGCTTTGACTGCATGGCGTGCTTTACATGGTACGGCTCGAATTTCTGAAGGACAAAGAGTACTTGTGATTGGTGGAGGTGGGGCTGTTGGGCTAGCTGCTGTTCAGCTTGCAGTAGCTGCAGGGTGTAGCGTTTCTGCAACCTGTGGAACTAAAAGTATTGAACAAGTGTTGGCCGCTGGTGCTGAAAAAGCTATCGATTACACTGCTGAGGATACTGAATCAGCAGTTAAAGGAAAGTTCGATGCCGTGTTGGATACCATAGGAGTACCTGAAACTGAGAGAATTGGCATTAATGTTCTGAGGAGAGGCGGACACTATATGACCCTTCAGGGAGAGGCGGCTGCCCTAGCAGATAGATATGGATTAGCTGTGGGACTTCCTGCTGCTACTGCTGTTTTACTAAAGAAACAAATGCATTACCGTTATTCTCATGGAATAGATTATTGGTGGACATACATGAGAGCTGACTCTGAAGGACTTCATGAGATACAGAGGCTGTCTGGAGCTGGGAAATTGCAGATACCGGTGGAGAAGACATTTCCCATCAGCAAAGTAAGAGAAGCTCACGAGGCCAAGGAGAAAAGGCTGGTGCCTGGCAAGGTGGTTTTAGAATTTGACTAGTTTTAGTAAGATTCTTCTCTTGTAGGAACAGAAGAACCGCACCTGTCTGTAAATCGTAAGAACTTTCTCCTTTTTCTTTACCTCTATTTTGGAAATATGTATCGGTTTGTTGGCCTGACAAAATTTGGTCGTCCTGTCAAGATGCATTTGTCATACATGGAAATGCAGTAAGCAATAACGTGAGGCCCGAAAGAAATTTTCTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCGTTACGTACCGTAT]

[+] EMBL C71865               [CCTCCCCCGTNTCCTTCTCCGGTCGGTTTCCCAACCCGAGAGGGCCTCGCCGCCATTGCCGCCTCGCTCCTCGTCTCGCGGGAACGNCGCCGCCGCCGCCGCCGCCATTAGGGCTTAGGGCTCAGGAGGCTCGCGGCGATGTGGTGGAGGGCCGCNAGGGCTCGCCGGCGGATCGCCGGNGCGCGGGCGGCGTCCACNTNGGCGGCGGCGGCGGGGNANAAGAGCTGCCGCGCCGTGGTGGTGCCTCGTTTCGNAGGGCCGGAGGTGCTGGAGGTNAGGCAGGGGGTGCCGGTGCCCGATCTNAAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AK067136             [                                        AGGGCCTCGCCGCCATTGCCGCCTCGCTCCTCGTCTCGCGGGAACGCCGCCGCCGCCGCCGCCGCCATTAGGGCTTAGGGCTCAGGAGGCTCGCGGCGATGTGGTGGAGGGCCGCGAGGGCTCGCCGGCGGATCGCCGGGGCGCGGGCGGCGTCCACGTCGGCGGCGGCGGCGGGGGAGAAGAGCTGCCGCGCCGTGGTGGTGCCTCGGTTCGGAGGGCCGGAGGTGCTGGAGGTGAGGCAGGGGGTGCCGGTGCCCGATCTGAAGCCGGGGGATGTGCTCGTGCGCGCGCGGGCCGTCTCCATCAACCCTCTGGACCTGCGAATGCGGTCTGGTTATGGGCGTTCAATATTTGAGCCAGTCCTACCTCTGATCATTGGCCGGGATATAAGTGGTGAAGTTGCAGCTACAGGGACTTCTGTGTCGTCCTTTACTATTGGGCAAGAAGTGTTTGGTGCTTTGCATCCAACAGCCATAAGAGGGACATACACCGATTATGCAATTCTTTCACAGGATGAGCTTACTTCCAAACCATCTACACTCAGTCATGTGGAGGCTAGCGCTATACCATTTGCTGCTTTGACTGCATGGCGTGCTTTACATGGTACGGCTCGAATTTCTGAAGGACAAAGAGTACTTGTGATTGGTGGAGGTGGGGCTGTTGGGCTAGCTGCTGTTCAGCTTGCAGTAGCTGCAGGGTGTAGCGTTTCTGCAACCTGTGGAACTAAAAGTATTGAACAAGTGTTGGCCGCTGGTGCTGAAAAAGCTATCGATTACACTGCTGAGGATACTGAATCAGCAGTTAAAGGAAAGTTCGATGCCGTGTTGGATACCATAGGAGTACCTGAAACTGAGAGAATTGGCATTAATGTTCTGAGGAGAGGCGGACACTATATGACCCTTCAGGGAGAGGCGGCTGCCCTAGCAGATAGATATGGATTAGCTGTGGGACTTCCTGCTGCTACTGCTGTTTTACTAAAGAAACAAATGCATTACCGTTATTCTCATGGAATAGATTATTGGTGGACATACATGAGAGCTGACTCTGAAGGACTTCATGAGATACAGAGGCTGTCTGGAGCTGGGAAATTGCAGATACCGGTGGAGAAGACATTTCCCATCAGCAAAGTAAGAGAAGCTCACGAGGCCAAGGAGAAAAGGCTGGTGCCTGGCAAGGTGGTTTTAGAATTTGACTAGTTTTAGTAAGATTCTTCTCTTGTAGGAACAGAAGAACCGCACCTGTCTGTAAATCGTAAGAACTTTCTCCTTTTTCTTTACCTCTATTTTGGAAATATGTATCGGTTTGTTGGCCTGACAAAATTTGGTCGTCCTGTCAAGATGCATTTGTCATACATGGAAATGCAGTAAGCAATAACGTGAGGCCCGAAAGAAA                                                                                      ]
[+] EMBL AU068707             [                                        AGGGCCTCGCCGCCATTGCCGCCTCGCTCCTCGTCTCGCGGGAACGCCGCCGCCGCCGCCGCCGCCATTAGGGCTTAGGGCTCAGGAGGCTCGCGGCGATGTGGTGGAGGGCCGCGAGGGCTCGCCGGCGGATCGCC GGGCGCGGGCGGCGTCCACGTNGGCGGCGGCGGCNGGGGAGAAGAGCTGCCGCGCCGTGGTGGTGCCTCGGTTCGGANGGCCGGA GTGCTGGAGGTGAGGCAGGGGGTGCCGGTNCCCGATCTGAAGCCGGGGGATATGCTCGTACGCNCGCGGNCCGTCTCCATCAACCCTCTGGACCTGCGAAT CGGTCTGGTTATGGGCGTTCAATATTTTAGCCAGTCCTACCTCTGATCATTGGCCGGGATATANGTTGTGAA TTGCAGCTACAGGGACTTCTGTGTCGTCCTTTACTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CA765355             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TGGGCTAGCTGCTGTTCAGCTTGCAGTAGCTGCAGGGTGTAGCGTTTCTGCAACCTGTGGAACTAAAAGTATTGAACAAGTGTTGGCCGCTGGTGCTGAAAAAGCTATCGATTACACTGCTGAGGATACTGAATCAGCAGTTAAAGGAAAGTTCGATGCCGTGTTGGATACCATAGGAGTACCTGAAACTGAGAGAATTGGCATTAATGTTCTGAGGAGAGGCGGACACTATATGACCCTTCAGGGAGAGGCGGCTGCCCTAGCAGATAGATATGGATTAGCTGTGGGACTTCCTGCTGCTACTGCTGTTTTACTAAAGAAACAAATGCAGTACCGTTATTCTCATGGAATAGATTATTGGTGGACATACATGAGAGCTGACTCTGAAGGACTTCATGAGATACAGAGGCTGTCTGGAGCTGGGAAATTGCAGATACCGGTGGAGAAGACATTTCCCATCAGCAAAGTAAGAGAAGCTCACGAGGCCAAGGAGAAAAGGCTGGTGCCTGGCAGGGTGGTTTTAGAATTTGACTAGTTTTAGTAAGATTCTTCTCTTGTAGGAACAGAAGAACCGCACCTGTCTGTAAATCGTAAGAACTTTCTCCTTTTTCTTTACCTCTATTTTGGAAATATGTATCGGNTTGGTGGCCTGACAAAANTTGGTCGNCCTGTCAAGATGCATTTGTCATACATGGAAATGCAGTAAGCAATAACGNGAGGCCCG AAGAAATTTTATTTTC                                                                            ]
[+] EMBL CF327401             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AAAATTTGGTCGTCCTGTCAAGATGCATTTGTCATACATGGAAATGCAGTAAGCAATAACGTGAGGCCCGAAAGAAATTTTCATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCATGCCGTTACGTACCGTAT]
[-] EMBL CF327400             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AAATTTGGTTGTCCTGTCAAAATGCATTTGTCATACATGGAAATGCAGTAAGCAATAACGTGAGGCCCGAAAAAAATTTTCTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA                                      ]


>consensus_13752#0 CCTCCCCCGTNTCCTTCTCCGGTCGGTTTCCCAACCCGAGAGGGCCTCGCCGCCATTGCC GCCTCGCTCCTCGTCTCGCGGGAACGCCGCCGCCGCCGCCGCCGCCATTAGGGCTTAGGG CTCAGGAGGCTCGCGGCGATGTGGTGGAGGGCCGCGAGGGCTCGCCGGCGGATCGCCGGG GCGCGGGCGGCGTCCACGTNGGCGGCGGCGGCGGGGGAGAAGAGCTGCCGCGCCGTGGTG GTGCCTCGGTTCGGAGGGCCGGAGGTGCTGGAGGTGAGGCAGGGGGTGCCGGTGCCCGAT CTGAAGCCGGGGGATGTGCTCGTGCGCGCGCGGGCCGTCTCCATCAACCCTCTGGACCTG CGAATGCGGTCTGGTTATGGGCGTTCAATATTTGAGCCAGTCCTACCTCTGATCATTGGC CGGGATATAAGTGGTGAAGTTGCAGCTACAGGGACTTCTGTGTCGTCCTTTACTATTGGG CAAGAAGTGTTTGGTGCTTTGCATCCAACAGCCATAAGAGGGACATACACCGATTATGCA ATTCTTTCACAGGATGAGCTTACTTCCAAACCATCTACACTCAGTCATGTGGAGGCTAGC GCTATACCATTTGCTGCTTTGACTGCATGGCGTGCTTTACATGGTACGGCTCGAATTTCT GAAGGACAAAGAGTACTTGTGATTGGTGGAGGTGGGGCTGTTGGGCTAGCTGCTGTTCAG CTTGCAGTAGCTGCAGGGTGTAGCGTTTCTGCAACCTGTGGAACTAAAAGTATTGAACAA GTGTTGGCCGCTGGTGCTGAAAAAGCTATCGATTACACTGCTGAGGATACTGAATCAGCA GTTAAAGGAAAGTTCGATGCCGTGTTGGATACCATAGGAGTACCTGAAACTGAGAGAATT GGCATTAATGTTCTGAGGAGAGGCGGACACTATATGACCCTTCAGGGAGAGGCGGCTGCC CTAGCAGATAGATATGGATTAGCTGTGGGACTTCCTGCTGCTACTGCTGTTTTACTAAAG AAACAAATGCATTACCGTTATTCTCATGGAATAGATTATTGGTGGACATACATGAGAGCT GACTCTGAAGGACTTCATGAGATACAGAGGCTGTCTGGAGCTGGGAAATTGCAGATACCG GTGGAGAAGACATTTCCCATCAGCAAAGTAAGAGAAGCTCACGAGGCCAAGGAGAAAAGG CTGGTGCCTGGCAAGGTGGTTTTAGAATTTGACTAGTTTTAGTAAGATTCTTCTCTTGTA GGAACAGAAGAACCGCACCTGTCTGTAAATCGTAAGAACTTTCTCCTTTTTCTTTACCTC TATTTTGGAAATATGTATCGGTTTGTTGGCCTGACAAAATTTGGTCGTCCTGTCAAGATG CATTTGTCATACATGGAAATGCAGTAAGCAATAACGTGAGGCCCGAAAGAAATTTTCTTT TCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCA TGCCGTTACGTACCGTAT



consensusID : consensus_13752#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1380
fasta sequence
                              [AGAGGGCCTCGCCGCCATTGCCGCCTCGCTCCTCGTCTCGCGGGAACGCCGCCGCCGCCGCCGCCGCCATTAGGGCTTAGGGCTCAGGAGGCTCGCGGCGATGTGGTGGAGGGCCGCGAGGGCTCGCCGGCGGATCGCCGGGGCGCGGGCGGCGTCCACGTCGGCGGCGGCGGCGGGGGAGAAGAGCTGCCGCGCCGTGGTGGTGCCTCGGTTCGGAGGGCCGGAGGTGCTGGAGGTGAGGCAGGGGGTGCCGGTGCCCGATCTGAAGCCGGGGGATGTGCTCGTGCGCGCGCGGGCCGTCTCCATCAACCCTCTGGACCTGCGAATGCGGTCTGGTTATGGGCGTTCAATATTTGAGCCAGTCCTACCTCTGATCATTGGCCGGGATATAAGTGGTGAAGTTGCAGCTACAGGGACTTCTGTGTCGTCCTTTACTATTGGGCAAGAAGTGTTTGGTGCTTTGCATCCAACAGCCATAAGAGGGACATACACCGATTATGCAATTCTTTCACAGGATGAGCTTACTTCCAAACCATCTACACTCAGTCATGTGGAGGCTAGCGCTATACCATTTGCTGCTTTGACTGCATGGCGTGCTTTACATGACAAAGAGTACTTGTGATTGGTGGAGGTGGGGCTGTTGGGCTAGCTGCTGTTCAGCTTGCAGTAGCTGCAGGGTGTAGCGTTTCTGCAACCTGTGGAACTAAAAGTATTGAACAAGTGTTGGCCGCTGGTGCTGAAAAAGCTATCGATTACACTGCTGAGGATACTGAATCAGCAGTTAAAGGAAAGTTCGATGCCGTGTTGGATACCATAGGAGTACCTGAAACTGAGAGAATTGGCATTAATGTTCTGAGGAGAGGCGGACACTATATGACCCTTCAGGGAGAGGCGGCTGCCCTAGCAGATAGATATGGATTAGCTGTGGGACTTCCTGCTGCTACTGCTGTTTTACTAAAGAAACAAATGCAGTACCGTTATTCTCATGGAATAGATTATTGGTGGACATACATGAGAGCTGACTCTGAAGGACTTCATGAGATACAGAGGCTGTCTGGAGCTGGGAAATTGCAGATACCGGTGGAGAAGACATTTCCCATCAGCAAAGTAAGAGAAGCTCACGAGGCCAAGGAGAAAAGGCTGGTGCCTGGCAAGGTGGTTTTAGAATTTGACTAGTTTTAGTAAGATTCTTCTCTTGTAGGAACAGAAGAACCGCACCTGTCTGTAAATCGTAAGAACTTTCTCCTTTTTCTTTACCTCTATTTTGGAAATATGTATCGGTTTGTTGGCCTGACAAAATTTGGTCGTCCTGTCAAGATGCATTTGTCATACATGGAAATGCAGTAAGCAATAACGTGAGGCCCGAAAGAAATTTTCATT]

[+] EMBL CB671207             [AGAGGGCCTCGCCGCCATTGCCGCCTCGCTCCTCGTCTCGCGGGAACGCCGCCGCCGCCGCCGCCGCCATTAGGGCTTAGGGCTCAGGAGGCTCGCGGCGATGTGGTGGAGGGCCGCGAGGGCTCGCCGGCGGATCGCCGGGGCGCGGGCGGCGTCCACGTCGGCGGCGGCGGCGGGGGAGAAGAGCTGCCGCGCCGTGGTGGTGCCTCGGTTCGGAGGGCCGGAGGTGCTGGAGGTGAGGCAGGGGGTGCCGGTGCCCGATCTGAAGCCGGGGGATGTGCTCGTGCGCGCGCGGGCCGTCTCCATCAACCCTCTGGACCTGCGAATGCGGTCTGGTTATGGGCGTTCAATATTTGAGCCAGTCCTACCTCTGATCATTGGCCGGGATATAAGTGGTGAAGTTGCAGCTACAGGGACTTCTGTGTCGTCCTTTACTATTGGGCAAGAAGTGTTTGGTGCTTTGCATCCAACAGCCATAAGAGGGACATACACCGATTATGCAATTCTTTCACAGGATGAGCTTACTTCCAAACCATCTACACTCAGTCATGTGGAGGCTAGCGCTATACCATTTGCTGCTTTGACTGCATGGCGTGCTTTACATGACAAAGAGTACTTGTGATTGGTGGAGGTGGGGCTGTTGGGCTAGCTGCTGTTCAGCTTGCAGTAGCTGCAGGGTGTAGCGTTTCTGCAACCTGTGGAACTAAAAGTATTGAACAAGTGTTGGCCGCTGGTGCTGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU225120             [                                                                                                                                                                                ggccgctGAGCTGCCGCGCCGTGGTGGTGCCTCGGTTCGGAGGGCCGGAGGTGCTGGAGGTGAGGCANGGGGTGCCGGTGCCCGATCTGAAGCCGGGGGATGTGCTCGTGCGCGCGCGGGCCGTCTCCATCAACCCTCTGGACCTGCGAATGCGGTCTGGTTATGGGCGTTCAATATTTGAGCCAGTCCTACCTCTGATCATTGGCCGGGATATAAGTGGTGAAGTTGCAGCTACAGGGACTTCTGTGTCGTCCTTTACTATTGGGCAAGAA TGTTTGGTGCTTTGCATCCAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL OSC364               [                                                                                                                                                                                                                     CGGAGGGCCGGAGGTGCTGGAGGTGAGGCAGGGGGTGCCGGTGCCCGATCTGAAGCCGGGGGATGTGCTCGTGCGCGCGCGGGCCGTCTCCATCAACCCTCTGGACCTGCGAATGCGGTCTGGTTATGGGTGTTCAATATTTGAGCCAGTCCTACCTCTGATCATTGGCCGGGATATAAGTGGTGAAGTTGCAGCTACAGGGACTTCTGTGTCGTCCTTTACTATTGGGCAAGAAGTGTTTNGTGCTTTGCATCCAACAGCCATAAGAGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CB671208             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GGCGTGCTTTACATGACAAAGAGTACTTGTGATTGGTGGAGGTGGGGCTGTTGGGCTAGCTGCTGTTCAGCTTGCAGTAGCTGCAGGGTGTAGCGTTTCTGCAACCTGTGGAACTAAAAGTATTGAACAAGTGTTGGCCGCTGGTGCTGAAAAAGCTATCGATTACACTGCTGAGGATACTGAATCAGCAGTTAAAGGAAAGTTCGATGCCGTGTTGGATACCATAGGAGTACCTGAAACTGAGAGAATTGGCATTAATGTTCTGAGGAGAGGCGGACACTATATGACCCTTCAGGGAGAGGCGGCTGCCCTAGCAGATAGATATGGATTAGCTGTGGGACTTCCTGCTGCTACTGCTGTTTTACTAAAGAAACAAATGCAGTACCGTTATTCTCATGGAATAGATTATTGGTGGACATACATGAGAGCTGACTCTGAAGGACTTCATGAGATACAGAGGCTGTCTGGAGCTGGGAAATTGCAGATACCGGTGGAGAAGACATTTCCCATCAGCAAAGTAAGAGAAGCTCACGAGGCCAAGGAGAAAAGGCTGGTGCCTGGCAAGGTGGTTTTAGAATTTGACTAGTTTTAGTAAGATTCTTCTCTTGTAGGAACAGAAGAACCGCACCTGTCTGTAAATCGTAAGAACTTTCTCCTTTTTCTTTACCTCTATTTTGGAAATATGTATCGGTTTGTTGGCCTGACAAAATTTGGTCGTCCTGTCAAGATGCATTTGTCATACATGGAAATGCAGTAAGCAATAACGTGAGGCCCGAAAGAAATTTTCATT]
[+] EMBL AK061904             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TGAGGATACTGAATCAGCAGTTAAAGGAAAGTTCGATGCCGTGTTGGATACCATAGGAGTACCTGAAACTGAGAGAATTGGCATTAATGTTCTGAGGAGAGGCGGACACTATATGACCCTTCAGGGAGAGGCGGCTGCCCTAGCAGATAGATATGGATTAGCTGTGGGACTTCCTGCTGCTACTGCTGTTTTACTAAAGAAACAAATGCAGTACCGTTATTCTCATGGAATAGATTATTGGTGGACATACATGAGAGCTGACTCTGAAGGACTTCATGAGATACAGAGGCTGTCTGGAGCTGGGAAATTGCAGATACCGGTGGAGAAGACATTTCCCATCAGCAAAGTAAGAGAAGCTCACGAGGCCAAGGAGAAAAGGCTGGTGCCTGGCAAGGTGGTTTTAGAATTTGACTAGTTTTAGTAAGATTCTTCTCTTGTAGGAACAGAAGAACCGCACCTGTCTGTAAATCGTAAGAACTTTCTCCTTTTTCTTTACCTCTATTTTGGAAATATGTATCGGTTTGTTGGCCTGACAAAATTTGGTCGTCCTGTCAAGATGCATTTGTCATACATGGAAATGCAGTAAGCAATAACGTGAGGCCCGAA             ]
[-] EMBL AI978408             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ATGGAATAGATTATTGGTGGACATACANNNGAGCTGACTCTGAAGGACTTCATGNGATACNNNGNNTGTCTGGAGCTGGGAAATTGCAGATACCGGTGGAGAAGACATTTCCCATCAGCAAAGTANNNGAAGCTCACGAGGCCAAGGAGAAAAGGCTGGTGCCTGGCAAGGTGGTTTTAGAATTTGACTAGTTTTAGTAAGATTCTTCTCTTGTAGGAACAGAAGAACCGCACCTGTCTGTAAATCGTAAGAACTTTCTCCTTTTTCTTTACCTCTATTTTGGAAATATGTATCGGTTTGTTGGCCTGACAAAATTTGGTCGTCCTGTCAAGATGCA                                                          ]


>consensus_13752#1 AGAGGGCCTCGCCGCCATTGCCGCCTCGCTCCTCGTCTCGCGGGAACGCCGCCGCCGCCG CCGCCGCCATTAGGGCTTAGGGCTCAGGAGGCTCGCGGCGATGTGGTGGAGGGCCGCGAG GGCTCGCCGGCGGATCGCCGGGGCGCGGGCGGCGTCCACGTCGGCGGCGGCGGCGGGGGA GAAGAGCTGCCGCGCCGTGGTGGTGCCTCGGTTCGGAGGGCCGGAGGTGCTGGAGGTGAG GCAGGGGGTGCCGGTGCCCGATCTGAAGCCGGGGGATGTGCTCGTGCGCGCGCGGGCCGT CTCCATCAACCCTCTGGACCTGCGAATGCGGTCTGGTTATGGGCGTTCAATATTTGAGCC AGTCCTACCTCTGATCATTGGCCGGGATATAAGTGGTGAAGTTGCAGCTACAGGGACTTC TGTGTCGTCCTTTACTATTGGGCAAGAAGTGTTTGGTGCTTTGCATCCAACAGCCATAAG AGGGACATACACCGATTATGCAATTCTTTCACAGGATGAGCTTACTTCCAAACCATCTAC ACTCAGTCATGTGGAGGCTAGCGCTATACCATTTGCTGCTTTGACTGCATGGCGTGCTTT ACATGACAAAGAGTACTTGTGATTGGTGGAGGTGGGGCTGTTGGGCTAGCTGCTGTTCAG CTTGCAGTAGCTGCAGGGTGTAGCGTTTCTGCAACCTGTGGAACTAAAAGTATTGAACAA GTGTTGGCCGCTGGTGCTGAAAAAGCTATCGATTACACTGCTGAGGATACTGAATCAGCA GTTAAAGGAAAGTTCGATGCCGTGTTGGATACCATAGGAGTACCTGAAACTGAGAGAATT GGCATTAATGTTCTGAGGAGAGGCGGACACTATATGACCCTTCAGGGAGAGGCGGCTGCC CTAGCAGATAGATATGGATTAGCTGTGGGACTTCCTGCTGCTACTGCTGTTTTACTAAAG AAACAAATGCAGTACCGTTATTCTCATGGAATAGATTATTGGTGGACATACATGAGAGCT GACTCTGAAGGACTTCATGAGATACAGAGGCTGTCTGGAGCTGGGAAATTGCAGATACCG GTGGAGAAGACATTTCCCATCAGCAAAGTAAGAGAAGCTCACGAGGCCAAGGAGAAAAGG CTGGTGCCTGGCAAGGTGGTTTTAGAATTTGACTAGTTTTAGTAAGATTCTTCTCTTGTA GGAACAGAAGAACCGCACCTGTCTGTAAATCGTAAGAACTTTCTCCTTTTTCTTTACCTC TATTTTGGAAATATGTATCGGTTTGTTGGCCTGACAAAATTTGGTCGTCCTGTCAAGATG CATTTGTCATACATGGAAATGCAGTAAGCAATAACGTGAGGCCCGAAAGAAATTTTCATT



consensusID : consensus_13752#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 486
fasta sequence
                              [ATTCGGCANAGGGAGAGGNGGNACACTATATGACCCTTCAGGAGAGGCGGCTGCCCTAGCAGATAGATATGGATTAGCTGTGGGACTTCCTGCTGCTACTGCTGTTTTACTAAAGAAACAAATGCAGTACCGTTATTCTCATGGAATAGATTATTGGTGGACATACATGAGAGCTGACTCTGAAGGACTTCATGAGATACAGAGGCTGTCTGGAGCTGGGAAATTGCAGATACCGGTGGAGAAGACATTTCCCATCAGCAAAGTAAGAGAAGCTCACGAGGCCAAGGAGAAAAGGCTGGTGCCTGGCAAGGTGGTTTTAGAATTTGACTAGTTTTAGTAAGATTCTTCTCTTGTAGGAACAGAAGAACCGCACCTGTCTGTAAATCGTAAGAACTTTCTCCTTTTTCTTTACCTCTATTTTGGAATATGTATCGGTTTGTTGGCCTGACAAAATTGGTCGTCCTGTCAAGATGCATTTGTCATACT]

[+] EMBL AI096165             [ATTCGGCANAGGGAGAGGNGGNACACTATATGACCCTTCAGGAGAGGCGGCTGCCCTAGCAGATAGATATGGATTAGCTGTGGGACTTCCTGCTGCTACTGCTGTTTTACTAAAGAAACAAATGCAGTACCGTTATTCTCATGGAATAGATTATTGGTGGACATACATGAGAGCTGACTCTGAAGGACTTCATGAGATACAGAGGCTGTCTGGAGCTGGGAAATTGCAGATACCGGTGGAGAAGACATTTCCCATCAGCAAAGTAAGAGAAGCTCACGAGGCCAAGGAGAAAAGGCTGGTGCCTGGCAAGGTGGTTTTAGAATTTGACTAGTTTTAGTAAGATTCTTCTCTTGTAGGAACAGAAGAACCGCACCTGTCTGTAAATCGTAAGAACTTTCTCCTTTTTCTTTACCTCTATTTTGGAATATGTATCGGTTTGTTGGCCTGACAAAATTGGTCGTCCTGTCAAGATGCATTTGTCATACT]
[+] EMBL AW069942             [                                                        ggGCAGGTAGATATGGATTAGCTGTGGGACTTCCTGCTGCTACTGCTGTTTTACTAAAGAAAC                                                                                                                                                                                                                                                                                                                                                                               ]


>consensus_13752#2 ATTCGGCANAGGGAGAGGNGGNACACTATATGACCCTTCAGGAGAGGCGGCTGCCCTAGC AGATAGATATGGATTAGCTGTGGGACTTCCTGCTGCTACTGCTGTTTTACTAAAGAAACA AATGCAGTACCGTTATTCTCATGGAATAGATTATTGGTGGACATACATGAGAGCTGACTC TGAAGGACTTCATGAGATACAGAGGCTGTCTGGAGCTGGGAAATTGCAGATACCGGTGGA GAAGACATTTCCCATCAGCAAAGTAAGAGAAGCTCACGAGGCCAAGGAGAAAAGGCTGGT GCCTGGCAAGGTGGTTTTAGAATTTGACTAGTTTTAGTAAGATTCTTCTCTTGTAGGAAC AGAAGAACCGCACCTGTCTGTAAATCGTAAGAACTTTCTCCTTTTTCTTTACCTCTATTT TGGAATATGTATCGGTTTGTTGGCCTGACAAAATTGGTCGTCCTGTCAAGATGCATTTGT CATACT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13752#0      CCTCCCCCGTNTCCTTCTCCGGTCGGTTTCCCAACCCGAGAGGGCCTCGCCGCCATTGCC 60
consensus_13752#1      --------------------------------------AGAGGGCCTCGCCGCCATTGCC 22
consensus_13752#2      ------------------------------------------------------------
                                                                                   

consensus_13752#0      GCCTCGCTCCTCGTCTCGCGGGAACGCCGCCGCCGCCGCCGCCGCCATTAGGGCTTAGGG 120
consensus_13752#1      GCCTCGCTCCTCGTCTCGCGGGAACGCCGCCGCCGCCGCCGCCGCCATTAGGGCTTAGGG 82
consensus_13752#2      ------------------------------------------------------------
                                                                                   

consensus_13752#0      CTCAGGAGGCTCGCGGCGATGTGGTGGAGGGCCGCGAGGGCTCGCCGGCGGATCGCCGGG 180
consensus_13752#1      CTCAGGAGGCTCGCGGCGATGTGGTGGAGGGCCGCGAGGGCTCGCCGGCGGATCGCCGGG 142
consensus_13752#2      ------------------------------------------------------------
                                                                                   

consensus_13752#0      GCGCGGGCGGCGTCCACGTNGGCGGCGGCGGCGGGGGAGAAGAGCTGCCGCGCCGTGGTG 240
consensus_13752#1      GCGCGGGCGGCGTCCACGTCGGCGGCGGCGGCGGGGGAGAAGAGCTGCCGCGCCGTGGTG 202
consensus_13752#2      ------------------------------------------------------------
                                                                                   

consensus_13752#0      GTGCCTCGGTTCGGAGGGCCGGAGGTGCTGGAGGTGAGGCAGGGGGTGCCGGTGCCCGAT 300
consensus_13752#1      GTGCCTCGGTTCGGAGGGCCGGAGGTGCTGGAGGTGAGGCAGGGGGTGCCGGTGCCCGAT 262
consensus_13752#2      ------------------------------------------------------------
                                                                                   

consensus_13752#0      CTGAAGCCGGGGGATGTGCTCGTGCGCGCGCGGGCCGTCTCCATCAACCCTCTGGACCTG 360
consensus_13752#1      CTGAAGCCGGGGGATGTGCTCGTGCGCGCGCGGGCCGTCTCCATCAACCCTCTGGACCTG 322
consensus_13752#2      ------------------------------------------------------------
                                                                                   

consensus_13752#0      CGAATGCGGTCTGGTTATGGGCGTTCAATATTTGAGCCAGTCCTACCTCTGATCATTGGC 420
consensus_13752#1      CGAATGCGGTCTGGTTATGGGCGTTCAATATTTGAGCCAGTCCTACCTCTGATCATTGGC 382
consensus_13752#2      ------------------------------------------------------------
                                                                                   

consensus_13752#0      CGGGATATAAGTGGTGAAGTTGCAGCTACAGGGACTTCTGTGTCGTCCTTTACTATTGGG 480
consensus_13752#1      CGGGATATAAGTGGTGAAGTTGCAGCTACAGGGACTTCTGTGTCGTCCTTTACTATTGGG 442
consensus_13752#2      ------------------------------------------------------------
                                                                                   

consensus_13752#0      CAAGAAGTGTTTGGTGCTTTGCATCCAACAGCCATAAGAGGGACATACACCGATTATGCA 540
consensus_13752#1      CAAGAAGTGTTTGGTGCTTTGCATCCAACAGCCATAAGAGGGACATACACCGATTATGCA 502
consensus_13752#2      ------------------------------------------------------------
                                                                                   

consensus_13752#0      ATTCTTTCACAGGATGAGCTTACTTCCAAACCATCTACACTCAGTCATGTGGAGGCTAGC 600
consensus_13752#1      ATTCTTTCACAGGATGAGCTTACTTCCAAACCATCTACACTCAGTCATGTGGAGGCTAGC 562
consensus_13752#2      ------------------------------------------------------------
                                                                                   

consensus_13752#0      GCTATACCATTTGCTGCTTTGACTGCATGGCGTGCTTTACATGGTACGGCTCGAATTTCT 660
consensus_13752#1      GCTATACCATTTGCTGCTTTGACTGCATGGCGTGCTTTACAT------------------ 604
consensus_13752#2      ------------------------------------------------------------
                                                                                   

consensus_13752#0      GAAGGACAAAGAGTACTTGTGATTGGTGGAGGTGGGGCTGTTGGGCTAGCTGCTGTTCAG 720
consensus_13752#1      ----GACAAAGAGTACTTGTGATTGGTGGAGGTGGGGCTGTTGGGCTAGCTGCTGTTCAG 660
consensus_13752#2      ------------------------------------------------------------
                                                                                   

consensus_13752#0      CTTGCAGTAGCTGCAGGGTGTAGCGTTTCTGCAACCTGTGGAACTAAAAGTATTGAACAA 780
consensus_13752#1      CTTGCAGTAGCTGCAGGGTGTAGCGTTTCTGCAACCTGTGGAACTAAAAGTATTGAACAA 720
consensus_13752#2      ------------------------------------------------------------
                                                                                   

consensus_13752#0      GTGTTGGCCGCTGGTGCTGAAAAAGCTATCGATTACACTGCTGAGGATACTGAATCAGCA 840
consensus_13752#1      GTGTTGGCCGCTGGTGCTGAAAAAGCTATCGATTACACTGCTGAGGATACTGAATCAGCA 780
consensus_13752#2      ------------------------------------------------------------
                                                                                   

consensus_13752#0      GTTAAAGGAAAGTTCGATGCCGTGTTGGATACCATAGGAGTACCTGAAACTGAGAGAATT 900
consensus_13752#1      GTTAAAGGAAAGTTCGATGCCGTGTTGGATACCATAGGAGTACCTGAAACTGAGAGAATT 840
consensus_13752#2      ------------------------------------------------------------
                                                                                   

consensus_13752#0      GGCATTAATGTTCTGAGGAGAGGCGGA-CACTATATGACCCTTCAGGGAGAGGCGGCTGC 959
consensus_13752#1      GGCATTAATGTTCTGAGGAGAGGCGGA-CACTATATGACCCTTCAGGGAGAGGCGGCTGC 899
consensus_13752#2      ---ATT--CGGCANAGGGAGAGGNGGNACACTATATGACCCTTCAGG-AGAGGCGGCTGC 54
                          ***   *      ******* **  ******************* ************

consensus_13752#0      CCTAGCAGATAGATATGGATTAGCTGTGGGACTTCCTGCTGCTACTGCTGTTTTACTAAA 1019
consensus_13752#1      CCTAGCAGATAGATATGGATTAGCTGTGGGACTTCCTGCTGCTACTGCTGTTTTACTAAA 959
consensus_13752#2      CCTAGCAGATAGATATGGATTAGCTGTGGGACTTCCTGCTGCTACTGCTGTTTTACTAAA 114
                       ************************************************************

consensus_13752#0      GAAACAAATGCATTACCGTTATTCTCATGGAATAGATTATTGGTGGACATACATGAGAGC 1079
consensus_13752#1      GAAACAAATGCAGTACCGTTATTCTCATGGAATAGATTATTGGTGGACATACATGAGAGC 1019
consensus_13752#2      GAAACAAATGCAGTACCGTTATTCTCATGGAATAGATTATTGGTGGACATACATGAGAGC 174
                       ************ ***********************************************

consensus_13752#0      TGACTCTGAAGGACTTCATGAGATACAGAGGCTGTCTGGAGCTGGGAAATTGCAGATACC 1139
consensus_13752#1      TGACTCTGAAGGACTTCATGAGATACAGAGGCTGTCTGGAGCTGGGAAATTGCAGATACC 1079
consensus_13752#2      TGACTCTGAAGGACTTCATGAGATACAGAGGCTGTCTGGAGCTGGGAAATTGCAGATACC 234
                       ************************************************************

consensus_13752#0      GGTGGAGAAGACATTTCCCATCAGCAAAGTAAGAGAAGCTCACGAGGCCAAGGAGAAAAG 1199
consensus_13752#1      GGTGGAGAAGACATTTCCCATCAGCAAAGTAAGAGAAGCTCACGAGGCCAAGGAGAAAAG 1139
consensus_13752#2      GGTGGAGAAGACATTTCCCATCAGCAAAGTAAGAGAAGCTCACGAGGCCAAGGAGAAAAG 294
                       ************************************************************

consensus_13752#0      GCTGGTGCCTGGCAAGGTGGTTTTAGAATTTGACTAGTTTTAGTAAGATTCTTCTCTTGT 1259
consensus_13752#1      GCTGGTGCCTGGCAAGGTGGTTTTAGAATTTGACTAGTTTTAGTAAGATTCTTCTCTTGT 1199
consensus_13752#2      GCTGGTGCCTGGCAAGGTGGTTTTAGAATTTGACTAGTTTTAGTAAGATTCTTCTCTTGT 354
                       ************************************************************

consensus_13752#0      AGGAACAGAAGAACCGCACCTGTCTGTAAATCGTAAGAACTTTCTCCTTTTTCTTTACCT 1319
consensus_13752#1      AGGAACAGAAGAACCGCACCTGTCTGTAAATCGTAAGAACTTTCTCCTTTTTCTTTACCT 1259
consensus_13752#2      AGGAACAGAAGAACCGCACCTGTCTGTAAATCGTAAGAACTTTCTCCTTTTTCTTTACCT 414
                       ************************************************************

consensus_13752#0      CTATTTTGGAAATATGTATCGGTTTGTTGGCCTGACAAAATTTGGTCGTCCTGTCAAGAT 1379
consensus_13752#1      CTATTTTGGAAATATGTATCGGTTTGTTGGCCTGACAAAATTTGGTCGTCCTGTCAAGAT 1319
consensus_13752#2      CTATTTTGGAA-TATGTATCGGTTTGTTGGCCTGACAAAATT-GGTCGTCCTGTCAAGAT 472
                       *********** ****************************** *****************

consensus_13752#0      GCATTTGTCATACATGGAAATGCAGTAAGCAATAACGTGAGGCCCGAAAGAAATTTTCTT 1439
consensus_13752#1      GCATTTGTCATACATGGAAATGCAGTAAGCAATAACGTGAGGCCCGAAAGAAATTTTCAT 1379
consensus_13752#2      GCATTTGTCATACT---------------------------------------------- 486
                       *************                                               

consensus_13752#0      TTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTC 1499
consensus_13752#1      T----------------------------------------------------------- 1380
consensus_13752#2      ------------------------------------------------------------
                                                                                   

consensus_13752#0      ATGCCGTTACGTACCGTAT 1518
consensus_13752#1      -------------------
consensus_13752#2      -------------------
                                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)