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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13759#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 542 fasta sequence
[TCTTCCTCCCCCCTCCAACTCCAAGAAATCGACTGACGCC-A-ACGAG-AACGAGACGCCATCGCTGCCATGGGTTTGCAGGAGGAGTTTGAGGAG-TTCGCCGAGA-AGGCCAAGACCTTGCCTGAC-ACAATTTCCAACGAGG-ACAAGCTGCTTCTCTATGGCCTCTACAAG-CA-GG-CAACCGTTGGCCCGGTTA-CCA-CTGGGCGCCCAGGTATTTTCAA-CCTGAAAGA-CAGATA-CA-AATGGGATG-CTTG-GAAGG-CCGTTGAAGGGAAATCCAAGGAGGAAGCTATGGCCGATTACATCACCAAGGTGAAG-CAGCT-GCTGGAGGAGGCTT-CTGCA-TCCACTTCTTAGGCTATTATGAACAACACCATCAAT-AGTGCT-GCATATATGT-ACCAATAAACAT-AAAT-ACTATACCATCATCAGGCGCTTTGTGATCATCCCT-TCTCTGTACTTGT-AATAGTTTCAAGC-AGACTCGGTCCTGT-TAATTGATCAT-GACTGTTATTAAAAAAATCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK058833 [TCTTCCTCCCCCCTCCAACTCCAAGAAATCGACTGACGCC A ACGAG AACGAGACGCCATCGCTGCCATGGGTTTGCAGGAGGAGTTTGAGGAG TTCGCCGAGA AGGCCAAGACCTTGCCTGAC ACAATTTCCAACGAGG ACAAGCTGCTTCTCTATGGCCTCTACAAG CA GG CAACCGTTGGCCCGGTTA CCA CTGGGCGCCCAGGTATTTTCAA CCTGAAAGA CAGATA CA AATGGGATG CTTG GAAGG CCGTTGAAGGGAAATCCAAGGAGGAAGCTATGGCCGATTACATCACCAAGGTGAAG CAGCT GCTGGAGGAGGCTT CTGCA TCCACTTCTTAGGCTATTATGAACAACACCATCAAT AGTGCT GCATATATGT ACCAATAAACAT AAAT ACTATACCATCATCAGGCGCTTTGTGATCATCCCT TCTCTGTACTTGT AATAGTTTCAAGC AGACTCGGTCCTGT TAATTGATCAT GACTGTTATTAAgtttgtc ]
[+] EMBL BI802922 [ gCCCCCTCCAACTCCAAGAAATCGACTGACGCCAA ACGAGTAACGAGACGCCATCGCTGCCATGGGTTTGCAGGAGGAGTTTGAGGAG TTCGCCGAGA AGGCCAAGACCTTGCCTGAC ACAATTTCCAACGAGG ACAAGCTGCTTCTCTATGGCCTCTACAAGCCACGGCCAACCGTTGGCCCGGTTACCCACCTGGGCGCCCAGGTATTTTCAA CCTGAAAGACCAGATACCACAATGGGATGCCTTGTGAAGGCCCGTTGAAGGGAAATCCAAGGAGGAAGCTATGGCCGATTACATCACCAAGGTGAAG CAGCT GCTGGAGGAGGCTTCCCGCA TCCACTTCTTAGGCTATTATGAACAACACCATCAAT AGTGCT GCATATATGT ACCAATAAACAT AAAT ACTATACCATCATCAGGCGCTTTGTGATCATCCCT TCTCTGTACTTGT AATAGTTTCAACC AGACTC GTCCTCT TAATTGATCAT GACTGTTATTAAAAAAA ]
[+] EMBL BI802934 [ gCCCCTCCAACTCCAAGAAATCGACTGACGCC A ACGAG AACGAGACGCCATCGCTGCCATGGGTTTGCAGGAGGAGTTTGAGGAG TTCGCCGAGA AGGCCAAGACCTTGCCTGAC ACAATTTCCAACGAGG ACAAGCTGCTTCTCTATGGCCTCTACAAG CA GG CAACCGTTGGCCCGGTTA CCA CTGGGCGCCCAGGTATTTTCAA CCTGAAAGA CAGATA CA AATGGGATG CTTG GAAGG CCGTTGAAGGGAAATCCAAGGAGGAAGCTATGGCCGATTACATCACCAAGGTGAAG CAGCTAACTGGAGGAGGCTT CTGCACTCCACTTCTTAGGCTATTATGAACAACACCATCAAT AGTGCT GCATATATGT ACCAATAAACAT AAAT ACTATACCATCATCAGGCGCTTTGTGATCATCCCT TCTCTGTACTTGT AATAGTTTCAAGCAAGACTCGGTCCTCTCTAATTGATCAT GACTGTTATTAAAAAAA ]
[+] EMBL BI802924 [ gCCCCTCCAACTCCAAGAAATCGACTGACGCC A ACGAG AACGAGACGCCATCGCTGCCATGGGTTTGCAGGAGGAGTTTGAGGAG TTCGCCGAGA AGGCCAAGACCTTGCCTGAC ACAATTTCCAACGAGG ACAAGCTGCTTCTCTATGGCCTCTACAAG CA GG CAACCGTTGGCCCGGTTA CCA CTGGGCGCCCAGGTATTTTCAA CCTGAAAGA CAGATA CA AATGGGATG CTTG GAAGG CCGTTGAAGGGAAATCCAAGGAGGAAGCTATGGCCGATTACATCACCAAGGTGAAGACAGCT GCTGGAGGAGGCTT CCGCA TCCACTTCTTAGGCTATTATGAACAACACCATCAAT AGTGCT GCATATATGT ACC ATAAACAT AAAT ACTATACCATCATCAGGCGCTTTGTGATCATCCCT TCTCTGTACTTGT AATAGTTTCAA C AGACTC GTCCCCT TAATTGATCAT GACTGTTATTAAAAAAA ]
[+] EMBL BI802961 [ AGAAATCGACTGACGCC ATACGAG AACGAGACGCCATCGCTGCCATGGGTTTGCAGGAGGAGTTTGAGGAGTTTCGCCGAGA AGGCCAAGACCTTGCCTGAC ACAATTTCCAACGAGGTACAAGCTGCTTCTCTATGGCCTCTACAAG CA GG CAACCGTTGGCCCGGTTA CCA CTGGGCGCCCAGGTATTTTCAA CCTGAAAGA CAGATA CA AATGGGATG CTTG GAAGG CCGTTGAAGGGAAATCCAAGGAGGAAGCTATGGCCGATTACATCACCAAGGTGAAG CAGCT GCTGGAGGAGGCTTGCCCCT GCCACTTCTTAGGCTATTATGAACAACACCATCAATGAGTGCTGGCATATATGTGACCAATAAACATGAAATGACTATACCATCATCAGGCGCTTTGTGATCATCCCTGTCTCTGTACTTGTCAATAGTTTCAAGC GGACTC GCCCCCC TAATTGATCATGGACTGTTATTAAAAAAA ]
[-] EMBL CB965586 [ CGCTGCCATGGGTTTGCAGGAGGAGTTTGAGGAG TTCGCCGAGA AGGCCAAGACCTTGCCTGAC ACAATTTCCAACGAGG ACAAGCTGCTTCTCTATGGCCTCTACAAG CA GG CAACCGTTGGCCCGGTTA CCA CTGGGCGCCCAGGTATTTTCAA CCTGAAAGA CAGATA CA AATGGGATG CTTG GAAGG CCGTTGAAGGGAAATCCAAGGAGGAAGCTATGGCCGATTACATCACCAAGGTGAAG CAGCT GCTGGAGGAGGCTT CTGCA TCCACTTCTTAGGCTATTATGAACAACACCATCAAT AGTGCT GCATATATGT ACCAATAAACAT AAAT ACTATACCATCATCAGGCGCTTTGTGATCATCCCT TCTCTGTACTTGT AATAGTTTCAAGC AGACTCGGTCCTGT TAATTGATCAT GACTGTTATTAAgtttgtcc ]
[-] EMBL CB965202 [ tcttCTTCCATGTGTTTGCAGGAGGAGTTTGAGGAG TTCTCCTAGATAGTCCAAGTCCTTGCTTGACTACTATTTCCATCGTGT ACAATCTGCTTCTCTATGGCCTCTACAAG CA GG CAACCGTTGGCCCGGTTA TCA CTGGGCGCCCAGGTATTTTCAA CCTGAAAGA CAGATA CA AATGGGATG CTTG GAAGG CCGTTGAAGGGAAATCCAAGGAGTAAGCTATGGCCGATTACATCACCAAGGTGAAG CAGCT GCTGGAGGAGGCTT CTGCA TCCACTTCTTAGGCTATTATGAACAACACCATCAAT AGTGCT GCATATATGT ACCAATAAACAT AAAT ACTATACCATCATCAGGCGCTTTGTGATCATCCCT TCTCTGTACTTGT AATAGTTTCAAGC AGACTCGGTCCTGT TAATTGATCAT GACTGTTATTAAgtttgtcc ]
[-] EMBL CB967066 [ AC ACAATTTCCAACGAGG ACAAGCTGCTTCTCTATGGCCTCTACAAG CA GG CAACCGTTGGCCCGGTTA CCA CTGGGCGCCCAGGTATTTTCAA CCTGAAAGA CAGATA CA AATGGGATG CTTG GAAGG CCGTTGAAGGGAAATCCAAGGAGGAAGCTATGGCCGATTACATCACCAAGGTGAAG CAGCT GCTGGAGGAGGCTT CTGCA TCCACTTCTTAGGCTATTATGAACAACACCATCAAT AGTGCT GCATATATGT ACCAATAAACAT AAAT ACTATACCATCATCAGGCGCTTTGTGATCATCCCT TCTCTGTACTTGT AATAGTTTCAAGC AGACTCGGTCCTGT TAATTGATCAT G ]
[-] EMBL CB967260 [ ACGAGG ACAAGCTGCTTCTCTATGGCCTCTACAAG CA GG CAACCGTTGGCCCGGTTA CCA CTGGGCGCCCAGGTATTTTCAACCCTGAAAGA CAGATA CA AATGGGATG CTTG GAAGG CCGTTGAAGGGAAATCCAAGGAGGAAGCTATGGCCGATTACATCACCAAGGTGAAG CAGCT GCTGGAGGAGGCTT CTGCA TCCACTTCTTAGGCTATTATGAACAACACCATCAAT AGTGCT GCATATATGT ACCAATAAACAT AAAT ACTATACCATCATCAGGCGCTTTGTGATCATCCCT TCTCTGTACTTGT AATAGTTTCAAGC AGACTCGGTCCTGT TAATTGATCAT G ]
[-] EMBL BU673183 [ ACGAGG ACAAGCTGCTTCTCTATGGCCTCTACAAG CA GG CAACCGTTGGCCCGGTTA CCA CTGGGCGCCCAGGTATTTTCAA CCTGAAAGA CAGATA CA AATGGGATG CTTG GAAGG CCGTTGAAGGGAAATCCAAGGAGGAAGCTATGGCCGATTACATCACCAAGGTGAAG CAGCT GCTGGAGGAGGCTT CTGCA TCCACTTCTTAGGCTATTATGAACAACACCATCAAT AGTGCT GCATATATGT ACCAATAAACAT AAAT ACTATACCATCATCAGGCGCTTTGTGATCATCCCT TCTCTGTACTTGT AATAGTTTCAAGC AGACTCGGTCCTGT TAATTGATCAT G ]
[+] EMBL CF319927 [ GGAGGAGGCTT CTGCA TCCACTTCTTAGGCTATTATGAACAACACCATCAAT AGTGCT GCATATATGT ACCAATAAACAT AAAT ACTATACCATCATCAGGCGCTTTGTGATCATCCCT TCTCTGTACTTGT AATAGTTTCAAGC AGACTCGGTCCTGT TAATTGATCAT GACTGTTATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF318477 [ GCTATTATGAACAACACCATCAAT AGTGCT GCATATATGT ACCAATAAACAT AAAT ACTATACCATCATCAGGCGCTTTGTGATCATCCCT TCTCTGTACTTGT AATAGTTTCAAGC AGACTCGGTCCTGT TAATTGATCAT GACTGTTATTAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAA ]
consensusID : consensus_13759#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 229 fasta sequence
[GGAAATCCAAGGAGGAAGATATTCCGATTACATCACCAAGGTAACAGCGTGCAGAGGCTTAGCATCCACTTTTTAGGGTATTATGAGCAACACCATCAATAGTGTTGCATATATGTACCAATAAACATAAATACTATACCATCATCAGGCGCTTTGTGATCATCCCTTATCTGTACTTGTAATAGTTTCAAGCAGACTCGGTCCTGTTACATTGATCATGACTGTTATT]
[-] EMBL BI305606 [GGAAATCCAAGGAGGAAGATATTCCGATTACATCACCAAGGTAACAGCGTGCAGAGGCTTAGCATCCACTTTTTAGGGTATTATGAGCAACACCATCAATAGTGTTGCATATATGTACCAATAAACATAAATACTATACCATCATCAGGCGCTTTGTGATCATCCCTTATCTGTACTTGTAATAGTTTCAAGCAGACTCGGTCCTGTTACATTGATCATGACTGTTATT]
consensusID : consensus_13759#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 216 fasta sequence
[ATGGAAGGAAGGAGTTTTCTGCATCCCCTTTTTAGGCTATTATGCCCCCCCCCATCAATAGTGTTGAATATATGTACCAATAAACATAAATACTATACCATCACCAGGGGCTTTGTGATCATCCCTTTTTGGGAAAAGTAAAAGAAAAAAAAAGAATCGGTCATGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF318476 [ATGGAAGGAAGGAGTTTTCTGCATCCCCTTTTTAGGCTATTATGCCCCCCCCCATCAATAGTGTTGAATATATGTACCAATAAACATAAATACTATACCATCACCAGGGGCTTTGTGATCATCCCTTTTTGGGAAAAGTAAAAGAAAAAAAAAGAATCGGTCATGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13759#0 TCTTCCTCCCCCCTCCAACTCCAAGAAATCGACTGACGCCAACGAGAACGAGACGCCATC 60
consensus_13759#1 ------------------------------------------------------------
consensus_13759#2 ------------------------------------------------------------
consensus_13759#0 GCTGCCATGGGTTTGCAGGAGGAGTTTGAGGAGTTCGCCGAGAAGGCCAAGACCTTGCCT 120
consensus_13759#1 ------------------------------------------------------------
consensus_13759#2 ------------------------------------------------------------
consensus_13759#0 GACACAATTTCCAACGAGGACAAGCTGCTTCTCTATGGCCTCTACAAGCAGGCAACCGTT 180
consensus_13759#1 ------------------------------------------------------------
consensus_13759#2 ------------------------------------------------------------
consensus_13759#0 GGCCCGGTTACCACTGGGCGCCCAGGTATTTTCAACCTGAAAGACAGATACAAATGGGAT 240
consensus_13759#1 ------------------------------------------------------------
consensus_13759#2 ------------------------------------------------------------
consensus_13759#0 GCTTGGAAGGCCGTTGAAGGGAAATCCAAGGAGGAAGCTATGGCCGATTACATCACCAAG 300
consensus_13759#1 -------------------GGAAATCCAAGGAGGAAGATATT-CCGATTACATCACCAAG 40
consensus_13759#2 ------------------------------------------------------------
consensus_13759#0 GTGAAGCAGCTGCTGGAGGAGGCTTCTGCATCCACTTCTTAGGCTATTATGAACAACACC 360
consensus_13759#1 GTAA-----CAGCGTGCAGAGGCTTA-GCATCCACTTTTTAGGGTATTATGAGCAACACC 94
consensus_13759#2 -------ATGGAAGGAAGGAGTTTTCTGCATCCCCTTTTTAGGCTATTATGCCCCCCCCC 53
*** ** ****** *** ***** ******* * * **
consensus_13759#0 ATCAATAGTGCTGCATATATGTACCAATAAACATAAATACTATACCATCATCAGGCGCTT 420
consensus_13759#1 ATCAATAGTGTTGCATATATGTACCAATAAACATAAATACTATACCATCATCAGGCGCTT 154
consensus_13759#2 ATCAATAGTGTTGAATATATGTACCAATAAACATAAATACTATACCATCACCAGGGGCTT 113
********** ** ************************************ **** ****
consensus_13759#0 TGTGATCATCCCTTCTCTGTACTTGTAATAGTTTCAAGCAGACTCGGTCCTGTTA-ATTG 479
consensus_13759#1 TGTGATCATCCCTTATCTGTACTTGTAATAGTTTCAAGCAGACTCGGTCCTGTTACATTG 214
consensus_13759#2 TGTGATCATCCCTTTTTGGGAAAAGTAAAAGAAAAAAAAAGAATCGGTCATGTTAAAAAA 173
************** * * * **** ** ** *** ****** ***** *
consensus_13759#0 ATCATGACTGTTATTAAAAAAATCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 539
consensus_13759#1 ATCATGACTGTTATT--------------------------------------------- 229
consensus_13759#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------------- 216
* * * *
consensus_13759#0 AAA 542
consensus_13759#1 ---
consensus_13759#2 ---
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||