Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 13766 cluster # 13766       Sequences # 14       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13766#0 length = 1082 sequences # 2  
consensus_13766#1 length = 861 sequences # 12  

consensusID : consensus_13766#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1082
fasta sequence
                              [CAAGCACACTACTAGCTCCGGCTCACTTAGCTCCCTACTGATCACTGGAACACTCATGACCAAGAAGGTGATACCGGCCATGGCGGCGGCGAGGCAGGATTCTTGCAAGACCAAGCTTGATGAGCGTGGGGGTAGTCATCAGGCTCCGAGCTCCGCGCGGTGGATCTCGTCCGAGCAGGAGCACAGCATCATCGTCGCGGCTCTGCGGTACGTGGTGTCCGGGTGCACCACGCCGCCGCCGGAGATCGTCACGGTGGCGTGCGGGGAGGCGTGTGCTCTGTGCGGCATCGACGGCTGTCTCGGGTGCGACTTCTTTGGGGCCGAGGCGGCGGGGAACGAGGAGGCGGTAATGGCGACGGATTATGCTGCTGCTGCTGCTGCGGCCGCGGTGGCAGGAGGATCAGGCGGGAAGAGGGTTAGGCGGAGGAGGAAGAAGAACGTGTACCGCGGCGTGCGGCATCGGCCGTGGGGGAAGTGGGCAGCGGAGATACGCGACCCGCGCCGCGCGGTGCGCAAGTGGCTCGGGACGTTCGACACCGCCGAGGAGGCCGCCAGGGCGTACGACCGCGCCGCCCTCGAGTTCCGCGGCGCGCGCGCGAAGCTCAACTTCCCGTGCTCCGAGCCTTTGCCCATGCCCAGCCAAAGAAACGGCAATGGCGGCGATGCTGTCACGGCGGCGACGACAACGGCAGAGCAGATGACTCCGACTCTGTCGCCGTGCAGCGCGGATGCCGAGGAGACGACGACGCCGGTGGATTGGCAGATGGGCGCGGACGAAGCCGGCAGCAACCAGCTCTGGGATGGCTTGCAGGACCTGATGAAGCTGGATGAAGCGGACACCTGGTTCCCGCCATTTTCCGGTGCAGCGTCTAGTTTTTGAGCTAGTGTTATTAGATCTCAACCGTTGGATTAGATTACTGGAAGGCCATTCATTTATTCGTTTCATTGTATAGCTAATTAGCTATACTTCATTGTTTGTGCAGAGCACGTTTTTTAGGAGTACCGTCTTATACATATTTTTTTGTACAGAGTAGAAAGTAACAAGAATTTTGTATATTGATGGAATAGATTATTTCCAATTA]

[+] EMBL AK067195             [CAAGCACACTACTAGCTCCGGCTCACTTAGCTCCCTACTGATCACTGGAACACTCATGACCAAGAAGGTGATACCGGCCATGGCGGCGGCGAGGCAGGATTCTTGCAAGACCAAGCTTGATGAGCGTGGGGGTAGTCATCAGGCTCCGAGCTCCGCGCGGTGGATCTCGTCCGAGCAGGAGCACAGCATCATCGTCGCGGCTCTGCGGTACGTGGTGTCCGGGTGCACCACGCCGCCGCCGGAGATCGTCACGGTGGCGTGCGGGGAGGCGTGTGCTCTGTGCGGCATCGACGGCTGTCTCGGGTGCGACTTCTTTGGGGCCGAGGCGGCGGGGAACGAGGAGGCGGTAATGGCGACGGATTATGCTGCTGCTGCTGCTGCGGCCGCGGTGGCAGGAGGATCAGGCGGGAAGAGGGTTAGGCGGAGGAGGAAGAAGAACGTGTACCGCGGCGTGCGGCATCGGCCGTGGGGGAAGTGGGCAGCGGAGATACGCGACCCGCGCCGCGCGGTGCGCAAGTGGCTCGGGACGTTCGACACCGCCGAGGAGGCCGCCAGGGCGTACGACCGCGCCGCCCTCGAGTTCCGCGGCGCGCGCGCGAAGCTCAACTTCCCGTGCTCCGAGCCTTTGCCCATGCCCAGCCAAAGAAACGGCAATGGCGGCGATGCTGTCACGGCGGCGACGACAACGGCAGAGCAGATGACTCCGACTCTGTCGCCGTGCAGCGCGGATGCCGAGGAGACGACGACGCCGGTGGATTGGCAGATGGGCGCGGACGAAGCCGGCAGCAACCAGCTCTGGGATGGCTTGCAGGACCTGATGAAGCTGGATGAAGCGGACACCTGGTTCCCGCCATTTTCCGGTGCAGCGTCTAGTTTTTGAGCTAGTGTTATTAGATCTCAACCGTTGGATTAGATTACTGGAAGGCCATTCATTTATTCGTTTCATTGTATAGCTAATTAGCTATACTTCATTGTTTGTGCAGAGCACGTTTTTTAGGAGTACCGTCTTATACATATTTTTTTGTACAGAGTAGAAAGTAACAAGAATTTTGTATATTGATGGAATAGATTATTTCCAATTA]
[-] EMBL AU071050             [                  CGGCTCACTTAGCTCCCTACTGATCACTGGAACACTCATGACCAAGAAGGTGATACCGGCCATGGCGGCGGCGAGGCAGGATTCTTGCAAGACCAAGCTTGATGAGCGTGGGGGTAGTCATCAGGCTCCGA NTCCGCGCGGTGGATCTCGTCCGAGCAGGAGCACAGCATCATCGTCGCGGCTCTGCGGTACGTGGTGTCCGGGTGCACCACGCCGCCGCCGGAGATCGTCACGGTGGCGTGCGGGGAGGCGTGTGCTCTGTGCGGCATCGACGGCTGTCTCGGGTGCGACTTCTTTGGGGCCGAGGCGGCGGGGAACGAGGAGGCGGTAATGGCGACGGATTATGCTGCTGCTGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]


>consensus_13766#0 CAAGCACACTACTAGCTCCGGCTCACTTAGCTCCCTACTGATCACTGGAACACTCATGAC CAAGAAGGTGATACCGGCCATGGCGGCGGCGAGGCAGGATTCTTGCAAGACCAAGCTTGA TGAGCGTGGGGGTAGTCATCAGGCTCCGAGCTCCGCGCGGTGGATCTCGTCCGAGCAGGA GCACAGCATCATCGTCGCGGCTCTGCGGTACGTGGTGTCCGGGTGCACCACGCCGCCGCC GGAGATCGTCACGGTGGCGTGCGGGGAGGCGTGTGCTCTGTGCGGCATCGACGGCTGTCT CGGGTGCGACTTCTTTGGGGCCGAGGCGGCGGGGAACGAGGAGGCGGTAATGGCGACGGA TTATGCTGCTGCTGCTGCTGCGGCCGCGGTGGCAGGAGGATCAGGCGGGAAGAGGGTTAG GCGGAGGAGGAAGAAGAACGTGTACCGCGGCGTGCGGCATCGGCCGTGGGGGAAGTGGGC AGCGGAGATACGCGACCCGCGCCGCGCGGTGCGCAAGTGGCTCGGGACGTTCGACACCGC CGAGGAGGCCGCCAGGGCGTACGACCGCGCCGCCCTCGAGTTCCGCGGCGCGCGCGCGAA GCTCAACTTCCCGTGCTCCGAGCCTTTGCCCATGCCCAGCCAAAGAAACGGCAATGGCGG CGATGCTGTCACGGCGGCGACGACAACGGCAGAGCAGATGACTCCGACTCTGTCGCCGTG CAGCGCGGATGCCGAGGAGACGACGACGCCGGTGGATTGGCAGATGGGCGCGGACGAAGC CGGCAGCAACCAGCTCTGGGATGGCTTGCAGGACCTGATGAAGCTGGATGAAGCGGACAC CTGGTTCCCGCCATTTTCCGGTGCAGCGTCTAGTTTTTGAGCTAGTGTTATTAGATCTCA ACCGTTGGATTAGATTACTGGAAGGCCATTCATTTATTCGTTTCATTGTATAGCTAATTA GCTATACTTCATTGTTTGTGCAGAGCACGTTTTTTAGGAGTACCGTCTTATACATATTTT TTTGTACAGAGTAGAAAGTAACAAGAATTTTGTATATTGATGGAATAGATTATTTCCAAT TA



consensusID : consensus_13766#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 861
fasta sequence
                              [TCACACCGAGACGAGAGCTCAGCAGCCAGCAGCGAGAGAACACAAACTCACATGACCAACCGGATCTCCGCCATGGGAGGCAACCAGGAGTACATGATCCGATTCGACGGCCACATCGACGATGCCTCGCCGAGCTCCGCCACTGCAGAGCCACCGCCGCCGCGGCGGCGGCTGGCGCCGCGGCGGGGCAGAGGAGGAGGAGGAAGAAGAAGAACAAGTACCGCGGCGTGCGGCAGCGGCCATGGGGGAAGTGGGCTGCGGAG-ATCCGCGACCCTCGCCGAGCGGTGCGCAAGTGGCTGGGGACGTTCGACACCGCCGAGGAGGCCGCCAGGGCGTACGACCGCGCCGCCGTCGAGTTCCGCGGCCCGCGCGCCAAGCTCAACTTCCCGTTCCCCGAGCAGCTCTCCGCGCACGACGACAGCAATGGCGACGCCAGCGCCGCCGCCAAGTCCGACACATTGTCTCCGTCGCCGCGCAGCGCAGACGCCGACGAGCAAGTAGAGCACACGCGGTGGCCGCAGGG-AGGAGGAGGCGGCGG-CGGCGGCGGCGGCGGCGAGACAGGGGACCAG-CTCTGGGAAGGCTTGCAAGACCTGATGCAGCTGGACGAAGGCGGGCTCAGCTGGTTCCCACAGTCGTCAGATTC-TTGGAATTGAACGTTGTGATTAG-ATCCCA--GCCGTTGGAATAGC-TTGAAACAAAG-AAGGCAGATTAACTAG-AGTTTT-TTTTTTCC-TCCTTTTCTTTTTCTATTTTCTATTGGCTCTGGTGTACTAATTGAACAAAGCAGACTTTGTAA-ATTATCCATAGAGTTGACTACTAAACTGTATTGAA-CAAAAAAAAAAAAAAAAAAAAAACAGAGCGGCCGTT]

[+] EMBL AK062882             [TCACACCGAGACGAGAGCTCAGCAGCCAGCAGCGAGAGAACACAAACTCACATGACCAACCGGATCTCCGCCATGGGAGGCAACCAGGAGTACATGATCCGATTCGACGGCCACATCGACGATGCCTCGCCGAGCTCCGCCACTGCAGAGCCACCGCCGCCGCGGCGGCGGCTGGCGCCGCGGCGGGGCAGAGGAGGAGGAGGAAGAAGAAGAACAAGTACCGCGGCGTGCGGCAGCGGCCATGGGGGAAGTGGGCTGCGGAG ATCCGCGACCCTCGCCGAGCGGTGCGCAAGTGGCTGGGGACGTTCGACACCGCCGAGGAGGCCGCCAGGGCGTACGACCGCGCCGCCGTCGAGTTCCGCGGCCCGCGCGCCAAGCTCAACTTCCCGTTCCCCGAGCAGCTCTCCGCGCACGACGACAGCAATGGCGACGCCAGCGCCGCCGCCAAGTCCGACACATTGTCTCCGTCGCCGCGCAGCGCAGACGCCGACGAGCAAGTAGAGCACACGCGGTGGCCGCAGGG AGGAGGAGGCGGCGG CGGCGGCGGCGGCGGCGAGACAGGGGACCAG CTCTGGGAAGGCTTGCAAGACCTGATGCAGCTGGACGAAGGCGGGCTCAGCTGGTTCCCACAGTCGTCAGATTC TTGGAATTGAACGTTGTGATTAG ATCCCA  GCCGTTGGAATAGC TTGAAACAAAG AAGGCAGATTAACTAG AGTTTT TTTTTT C TCCTTTTCTTTTTCTATTTTCTATTGGCTCTGGTGTACTAATTGAACAAAGCAGAGTTTGTAA ATTATCCATAGAGTTGACTACTAAAC                                              ]
[+] EMBL CB966859             [                                                                                                                                                                       ggGGCTGGCGCCG GGCGGGGCAGA GAGGAGGAGGAAGAAGAAG ACAAGTACCGCGGCGTGCGGCAGCGGCCATGGGGGAAGTGGGCTGCGGAG ATCCGCGACCCTCGCCGAGCGGTGCGCAAGTGGCTGGGGACGTTCGACACCGCCGAGGAGGCCGCCAGGGCGTACGACCGCGCCGCCGTCGAGTTCCGCGGCCCGCGCGCCAAGCTCAACTTCCCGTTCCCCGAGCAGCTCTCCGCGCACGACGACAGCAATGGCGACGCCAGCGCCGCCGCCAAGTCCGACACATTGTCTCCGTCGCCGCGCAGCGCAGACGCCGACGAGCAAGTAGAGCACACGCGGTGGCCGCAGGG AGGAGGAGGCGGCGG CGGCGGCGGCGGCGGCGAGACAGGGGACCAG CTCTGGGAAGGCTTGCAAGACCTGATGCAGCTGGACGAAGGCGGGCTCAGCTGGTTCCCACAGTCGTCAGATTCNTTGGAATTGAACGTTGTGATTAGNATCCCANNGCCGTTGGAATAGCNTTGAAACAAAGAAAGGCAGATTAACTAGAAGTTTTATTTTTTCCTTCCTTTTCTTTTTCTATTTTCTATTGGCTCTGGTGTACTAATTGAACAAAGCAGACTTTGTAA ATTATCCATAGAGTTGACTACTAAACTGTATTGAA CAAAAAAAAAAAAAAAAAAAAAACAGAGCG      ]
[+] EMBL CB965414             [                                                                                                                                                                           CTGGCGCCGCGGCGGGGCAGAGGAGGAGGAGGAAGAAGAAGAACAAGTACCGCGGCGTGCGGCAGCGGCCATGGGGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CB966798             [                                                                                                                                                                            TGGCGCCGCGGCGGGGCAGAGGAGGAGGAGGAAGAAGAAGAACAAGTACCGCGGCGTGCGGCAGCGGCCATGGGGGAAGTGGGCTGCGGAG ATCCGCGACCCTCGCCGAGCGGTGCGCAAGTGGCTGGGGACGTTCGACACCGCCGAGGAGGCCGCCAGGGCGTACGACCGCGCCGCCGTCGAGTTCCGCGGCCCGCGCGCCAAGCTCAACTTCCCGTTCCCCGAGCAGCTCTCCGCGCACGACGACAGCAATGGCGACGCCAGCGCCGCCGCCAAGTCCGACACATTGTCTCCGTCGCCGCGCAGCGCAGACGCCGACGAGCAAGTAGAGCACACGCGGTGGCCGCAGGGCAGGAGGAGGCGGCGG CGGCGGCGGCGGCGGCGAGACAGGGGACCAG CTCTGGGAAGGCTTGCAAGACCTGATGCAGCTGGACGAAGGCGGGCTCAGCTGGTTCCCACAGTCGTCAGATTC TTGGAATTGAACGTTGTGATTAG ATCCCA  GCCGTTGGAATAGC TTGAAACAAAG AAGGCAGATTAACTAG AGTTTC CTTTTTCC TCCTTTTCTTTTTCTATTTTCTATTGGCTCTGGTGTACTAATTGAACAAAGCAGACTTTGTCA ATTATCCATAGAGTTGACTACTAAACTGTATTGAA CAAAACACACCAAAAAACAAAAACAGAGCGGCCGat]
[+] EMBL CB964909             [                                                                                                                                                                            TGGCGCCGCGGCGGGGCAGAGGAGGAGGAGGAAGAAGAAGAACAAGTACCGCGGCGTGCGGCAGCGGCCATGGGGGAAGTGGGCTGCGGAG ATCCGCGACCCTCGCCGAGCGGTGCGCAAGTGGCTGGGGACGTTCGACACCGCCGAGGAGGCCGCCAGGGCGTACGACCGCGCCGCCGTCGAGTTCCGCGGCCCGCGCGCCAAGCTCAACTTCCCGTTCCCCGAGCAGCTCTCCGCGCACGACGACAGCAATGGCGACGCCAGCGCCGCCGCCAAGTCCGACACATTGTCTCCGTCGCCGCGCAGCGCAGACGCCGACGAGCAAGTAGAGCACACGCGGTGGCCGCAGGG AGGAGGAGGCGGCGG CGGCGGCGGCGGCGGCGAGACAGGGGACCAG CTCTGGGAAGGCTTGCAAGACCTGATGCAGCTGGACGAAGGCGGGCTCAGCTGGTTCCCACAGTCGTCAGATTC TTGGAATTGAACGTTGTGATTAG ATCCCA  GCCGTTGGAATAGC TTGAAACAAAG AAGGCAGATTAACTAG AGTTTT TTTTTTCC TCCTTTTCTTTTTCTATTTTCTATTGGCTCTGGTGTACTAATTGAACAAAGCAGACTTTGTAA ATTATCCATAGAGTTGACTACTAACCTGTATTGAA CAAAAAAAAAAAAAAAGAAAAAACAGAGCGGCCGTT]
[+] EMBL CB966697             [                                                                                                                                                                            TGGCGCCGCGGCGGGGCAGAGGAGGAGGAGGAAGAAGAAGAACAAGTACCGCGGCGTGCGGCAGCGGCCATGGGGGAAGTGGGCTGCGGAG ATCCGCGACCCTCGCCGAGCGGTGCGCAAGTGGCTGGGGACGTTCGACACCGCCGAGGAGGCCGCCAGGGCGTACGACCGCGCCGCCGTCGAGTTCCGCGGCCCGCGCGCCAAGCTCAACTTCCCGTTCCCCGAGCAGCTCTCCGCGCACGACGACAGCAATGGCGACGCCAGCGCCGCCGCCAAGTCCGACACATTGTCTCCGTCGCCGCGCAGCGCAGACGCCGACGAGCAAGTAGAGCACACGCGGTGGCCGCAGGG AGGAGGAGGCGGCGG CGGCGGCGGCGGCGGCGAGACAGGGGACCAG CTCTGGGAAGGCTTGCAAGACCTGATGCAGCTGGACGAAGGCGGGCTCAGCTGGTTCCCACAGTCGTCAGATTC TTGGAATTGAACGTTGTGATTAG ATCCCA  GCCGTTGGAATAGC TTGAAACAAAG AAGGCAGATTAACTAG AGTTTT TTTTTTCC TCCTTTTCTTTTTCTATTTTCTATTGGCTCTGGTGTACTAATTGAACAAAGCAGACTTTGTAACATTATCCATAGAGTTGACTACTAAACTGTATTGAA C AAAAACCAACCCACCCCCAAACCGAGCGGCCGct]
[+] EMBL CB965318             [                                                                                                                                                                            TGGCGCCGCGGCGGGGCAGAGGAGGAGGAGGAAGAAGAAGAACAAGTACCGCGGCGTGCGGCAGCGGCCATGGGGGAAGTGGGCTGCGGAGCAT CGCGACCCTCGCCGAGCGGTGCGCAAGTGGCTGGGGACGTTCGACACCGCCGAGGAGGCCGCCAGGGCGTACGACCGCGCCGCCGTCGAGTTCCGCGGCCCGCGCGCCAAGCTCAACTTCCCGTTCCCCGAGCAGCTCTCCGCGCACGACGACAGCAATGGCGACGCCAGCGCCGCCGCCAAGTCCGACACATTGTCTCCGTCGCCGCGCAGCGCAGACGCCGACGAGCAAGTAGAGCACACGCGGTGGCCGCAGGG AGGAGGAGGCGGCGG AGGAGGAGGAGGCGGCGAGACAGGGGACCAGACTCTGGGAAGGCTTGCAAGACCTGATGCAGATGGACGAAGGC                                                                                                                                                                                                                                                                     ]
[+] EMBL CB965341             [                                                                                                                                                                            TGGCGCCGCGGCGGGGCAGAGGAGGAGGAGGAAGAAGAAGAACAAGTACCGCGGCGTGCGGCAGCGGCCATGGGGGAAGTGGGCTGCGGAG ACTCGCGACCCTCGCCGAGCGGTGCGCAAGTGGCTGGGGACGTTCGACACCGCCGAGGAGGCCGCCAGGGCGTACGACCGCGCCGCCGTCGAGTTCCGCGGCCCGCGCGCCAAGCTCAACTTCCCGTTCCCCGAGCAGCTCTCCGCGCACGACGACAGCAATGGCGACGCCAGCGCCGCCGCCAAGTCCGACACATTGTCTCCGTCGCCGCGCAGCGCAGACGCCGACGAGCAAGTAGAGCACACGCGGTGGCCGCAGGG AGGAGGAGGCGGCGGAAGGCGGCGGAGGCGACGAGACAGGGGACCAG CTCT                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CB967280             [                                                                                                                                                                            TGGCGCCGCGGCGGGGCAGAGGAGGAGGAAGAAGAAGAAGAACAAGTACCGCGGCGTGCGGCAGCGGCCATGGGGGAAGTGGGCTGCGGAG ATCCGCGACCCTCGCCGAGCGGTGCGCAAGTGGCTGGGGACGTTCGACACCGCCGAGGAGGCCGCCAGGGCGTACGACCGCGCCGCCGTCGAGTTCCGCGGCCCGCGCGCCAAGCTCAACTTCCCGTTCCCCGAGCAGCTCTCCGCGCACGACGACAGCAATGGCGACGCCAGCGCCGCCGCCAAGTCCGACACATTGTCTCCGTCGCCGCGCAGCGCAGACGCCGACGAGCAAGTAGAGCACACGCGGTGGCCGCAGGG AGGAGGAGGCGGCGG CGGCGGCGGCGGCGGCGAGACAGGGGACCAG CTCTGGGAAGGCTTGCAAGACCTGATGCAGCTGGACGAAGGCGGGCTCAGCTGGTTCCCACAGTCGTCAGATTC TTGGAATTGAACGTTGTGATTAG ATCCCA  GCCGTTGGAATAGC TTGAAACAAAG AAGGCAGATTAACTAG AGTTTT TTTTTTCC TCCTTTTCTTTTTCTATTTTCTATTGGCTCTGGTGTACTAATTGAACAAAGCAGACTTTGTAA ATTATCCATAGAGTTGACTACTAAACTGTATTGAACCAAAAAAAAAACAAAAAAAAAAACAGAGCGGCCGTT]
[+] EMBL CB967344             [                                                                                                                                                                                GCCGCGGCGGGGCAGAGGAGGAGGAGGAAGAAGAAGAACAAGTACCGCGGCGTGCGGCAGCGGCCATGGGGGAAGTGGGCTGCGGAG ATCCGCGACCCTCGCCGAGCGGTGCGCAAGTGGCTGGGGACGTTCGACACCGCCGAGGAGGCCGCCAGGGCGTACGACCGCGCCGCCGTCGAGTTCCGCGGCCCGCGCGCCAAGCTCAACTTCCCGTTCCCCGAGCAGCTCTCCGCGCACGACGACAGCAATGGCGACGCCAGCGCCGCCGCCAAGTCCGACACATTGTCTCCGTCGCCGCGCAGCGCAGACGCCGACGAGCAAGTAGAGCACACGCGGTGGCCGCAGGG AGGAGGAGGCGGCGG CGGCGGCGGCGGCGGCGAGACAGGGGACCAG CTCTGGGAAGGCTTGCAAGACCTGATGCAGCTGGACGAAGGCGGGCTCAGCTGGTTCCCACAGTCGTCAGATTC TTGGAATTGAACGTTGTGATTAG ATCCCA  GCCGTTGGAATAGC TTGAAACAAAG AATGCAGATTAACTAG AGTTTT TTTTTTCC TCCTTTTCTTTTTCTATTTTCTATTGGNTCTGGTGTACTAATTGAACAAAGCAGAC TTGTAA ATTATCCATAGAGTTGACTACTAAAC                                              ]
[+] EMBL BI305674             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CTTTTTCTATTTTCTATTGGCTCTGGTGTACTAATTGAACAAAGCAGACTTTGTAA ATTATCCATAGAGTTGACTACTAAACTGTATTGAA C AAAAAAAAAAAAAAAAAAAAACAGAGCG      ]
[+] EMBL BI306299             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CTTTTTCTATTTTCTATTGGCTCTGGTGTACTAATTGAACAAAGCAGACTTTGTAA ATTATCCATAGAGTTGACTACTAAACTGTATTGAA C                                   ]


>consensus_13766#1 TCACACCGAGACGAGAGCTCAGCAGCCAGCAGCGAGAGAACACAAACTCACATGACCAAC CGGATCTCCGCCATGGGAGGCAACCAGGAGTACATGATCCGATTCGACGGCCACATCGAC GATGCCTCGCCGAGCTCCGCCACTGCAGAGCCACCGCCGCCGCGGCGGCGGCTGGCGCCG CGGCGGGGCAGAGGAGGAGGAGGAAGAAGAAGAACAAGTACCGCGGCGTGCGGCAGCGGC CATGGGGGAAGTGGGCTGCGGAGATCCGCGACCCTCGCCGAGCGGTGCGCAAGTGGCTGG GGACGTTCGACACCGCCGAGGAGGCCGCCAGGGCGTACGACCGCGCCGCCGTCGAGTTCC GCGGCCCGCGCGCCAAGCTCAACTTCCCGTTCCCCGAGCAGCTCTCCGCGCACGACGACA GCAATGGCGACGCCAGCGCCGCCGCCAAGTCCGACACATTGTCTCCGTCGCCGCGCAGCG CAGACGCCGACGAGCAAGTAGAGCACACGCGGTGGCCGCAGGGAGGAGGAGGCGGCGGCG GCGGCGGCGGCGGCGAGACAGGGGACCAGCTCTGGGAAGGCTTGCAAGACCTGATGCAGC TGGACGAAGGCGGGCTCAGCTGGTTCCCACAGTCGTCAGATTCTTGGAATTGAACGTTGT GATTAGATCCCAGCCGTTGGAATAGCTTGAAACAAAGAAGGCAGATTAACTAGAGTTTTT TTTTTCCTCCTTTTCTTTTTCTATTTTCTATTGGCTCTGGTGTACTAATTGAACAAAGCA GACTTTGTAAATTATCCATAGAGTTGACTACTAAACTGTATTGAACAAAAAAAAAAAAAA AAAAAAAACAGAGCGGCCGTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13766#0      CAAGCACACTACTAGCTCCGGCTCACTTAGCTCCCTACTGATCACTGGAACACTCATGAC 60
consensus_13766#1      ------------------------------------------------------------
                                                                                   

consensus_13766#0      CAAGAAGGTGATACCGGCCATGGCGGCGGCGAGGCAGGATTCTTGCAAGACCAAGCTTGA 120
consensus_13766#1      ------------------------------------------------------------
                                                                                   

consensus_13766#0      TGAGCGTGGGGGTAGTCATCAGGCTCCGAGCTCCGCGCGGTGGATCTCGTCCGAGCAGGA 180
consensus_13766#1      ------------------------------------------------------------
                                                                                   

consensus_13766#0      GCACAGCATCATCGTCGCGGCTCTGCGGTACGTGGTGTCCGGGTGCACCACGCCGCCGCC 240
consensus_13766#1      -----------------------------------------------TCACACCGAGACG 13
                                                                       *** ***   * 

consensus_13766#0      GGAGATCGTCACGGTGGCGTGCGGGGAGGCGTGTGCTCTGTGCGGCATCGACGGCTGTCT 300
consensus_13766#1      AGAGCTCAGCA-GCCAGCA-GCGAGAGAACACAAACTCACATGACCAACCGGATCTCCGC 71
                        *** **  ** *   **  *** *    *     ***       ** *     **    

consensus_13766#0      CGGGTGCGACTTCTTTGGGGCCGAGGCGGCGGGGAACGAGGAGG-CGGTAATGGC--GAC 357
consensus_13766#1      CATGGGAGGCAACCAGGAGTACATGATCCGATTCGACGGCCACATCGACGATGCCTCGCC 131
                       *  * * * *  *   * *  *  *          ***   *   **   *** *  * *

consensus_13766#0      GGATTATGCTGCTGCTG--CTGCTGCGGCCGCGGTGGCAGGAGGATCAGGCGGGAAGAGG 415
consensus_13766#1      GAGCTCCGCCACTGCAGAGCCACCGCCGCCGCGGCGGCGGCTGGCGCCGCGGCGGGGCAG 191
                       *   *  **  **** *  *  * ** ******* *** *  **  * *  * *  *  *

consensus_13766#0      GTTAGGCGGAGGAGGAAGAAGAACGTGTACCGCGGCGTGCGGCATCGGCCGTGGGGGAAG 475
consensus_13766#1      AGGAGGAGGAGGAAGAAGAAGAACAAGTACCGCGGCGTGCGGCAGCGGCCATGGGGGAAG 251
                          *** ****** **********  ****************** ***** *********

consensus_13766#0      TGGGCAGCGGAGATACGCGACCCGCGCCGCGCGGTGCGCAAGTGGCTCGGGACGTTCGAC 535
consensus_13766#1      TGGGCTGCGGAGATCCGCGACCCTCGCCGAGCGGTGCGCAAGTGGCTGGGGACGTTCGAC 311
                       ***** ******** ******** ***** ***************** ************

consensus_13766#0      ACCGCCGAGGAGGCCGCCAGGGCGTACGACCGCGCCGCCCTCGAGTTCCGCGGCGCGCGC 595
consensus_13766#1      ACCGCCGAGGAGGCCGCCAGGGCGTACGACCGCGCCGCCGTCGAGTTCCGCGGCCCGCGC 371
                       *************************************** ************** *****

consensus_13766#0      GCGAAGCTCAACTTCCCGTGCTCCGAGCCTTTGCCCATGCCCAGCCAAAGAAACGGCAAT 655
consensus_13766#1      GCCAAGCTCAACTTCCCGTTCCCCGAGCAGCTCTCCGCGCACGACGACAGCAATGGCGAC 431
                       ** **************** * ******   *  **  ** *  * * ** ** *** * 

consensus_13766#0      GGCGGCGATGCTGTCACGGCGGCGACGACAACGGCAGAGCAG-ATGACTCCGACTCTGTC 714
consensus_13766#1      GCCAGCGCCGCCGCCAAGTCCGACACATTGTCTCCGTCGCCGCGCAGCGCAGACGCCGAC 491
                       * * ***  ** * ** * * *  **     *  *   ** *     * * *** * * *

consensus_13766#0      GC-CGTGCAGCGCGGATGCCGAGGAGACGACGACGCCGGTGGATTGGCAGATG-GGCGCG 772
consensus_13766#1      GAGCAAGTAGAGCACACGCGGTGGCCGCAGGGAGGAGGAGGCGGCGGCGGCGGCGGCGGC 551
                       *  *  * ** **  * ** * **   *   ** *  *  *    *** *  * ****  

consensus_13766#0      GACGAAGCCGGCAGCAACCAGCTCTGGGATGGCTTGCAGGACCTGATGAAGCTGGATGAA 832
consensus_13766#1      GGCGAGACAGGGG---ACCAGCTCTGGGAAGGCTTGCAAGACCTGATGCAGCTGGACGAA 608
                       * ***  * **     ************* ******** ********* ******* ***

consensus_13766#0      G-CGGACAC--CTGGTTCCCGCCATTTTCCGGTGCAGCGTCTAGTTTTTGAGCTAGTGTT 889
consensus_13766#1      GGCGGGCTCAGCTGGTTCCCACAGTCGTCAGAT------TCTTGGAATTGAAC-GTTGTG 661
                       * *** * *  ********* *  *  ** * *      *** *   **** *   *** 

consensus_13766#0      ATTAGATCTCAACCGTTGGATTAGATTACTG----GAAGGCCATTCATTTA---TTCGTT 942
consensus_13766#1      ATTAGATCCCAGCCGTTGGAATAGCTTGAAACAAAGAAGGCAGATTAACTAGAGTTTTTT 721
                       ******** ** ******** *** **        ******   * *  **   **  **

consensus_13766#0      TCATTGTATAGCTAATTAGCTATACTTCATTGTTTGTGCAGAGCACGTTTTTTAGGAGTA 1002
consensus_13766#1      TTTTCCTCCTTTTCTTTTTCTATTTTCTATTGGCTCTG--GTGTAC-TAATTGAACAAAG 778
                       *  *  *     *  **  ****  *  ****  * **  * * ** *  ** *  *   

consensus_13766#0      CCGTCTTATACATATTTTTTTGTACAGAGTAGAA-AGTAACAAGAATTTTGTATATTGAT 1061
consensus_13766#1      CAGACTT-TGTAAATTATCC---ATAGAGTTGACTACTAAACTGTATTGAACAAAAAAAA 834
                       * * *** *  * *** *     * ***** **  * ***   * ***    * *   * 

consensus_13766#0      GGAATAGATTATTTCCAATTA------ 1082
consensus_13766#1      AAAAAAAAAAAAAACAGAGCGGCCGTT 861
                         ** * *  *   *  *         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)