These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13789#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1742 fasta sequence [CGTCTCCTCGAAGCTTTCTCCCAAACTGCTCGTCCATGGCGTTCGCCACACTGGTGGGAGTGGGAGGCCTATCGCCTGCCCTCTTCTCCCCCTCCCGCCCCCTCTCCTGCTCCAGCTCCACCTCCGTCTCGGCCCCGTTCATCCTCCGCGCCGGCGGCGGCGGCGACGCCCG-GCGGCATGGCCTCCGACGCCTCGTCACCCCACTGAGAGGGAGCGCCTGCAGGGGAGAGAGTACGAACTCACGTGTACTCCAGTGTGCCAATGAGGCTAATGTGGTGACCGAGGATGACATTGTGAACGATGGTATCGATGATGAAACCGCTTCCGATGCTGAAATGGATGAGGATGCTGAAGCAAATGGTGATGAGTCGTCAGGCACTGATGAAGATGCTTCTGTCTCCTGGATAGAGCAGCAGCCTCTTCCTTATCCTTCAGATGCCCTAGAGCCATACATCAGCAAGGAGACGGTGGAACAGCACTGGGGAGTTCATCAGAACATTCACGTCGAGAGGCTCAATGGCATGATTGGTGGCAGTGAGTGGGAGGGGATGTCGCTGGGGCAGATGATGCTATCCTCCTTCAATGAGGGCAGGGAGGCACCCCATCCCCCCTTCTTCCATGCTGCACAGATATGGAACCATGATTTCTATTGGCGATCTATGCAACCTGGTGGCGGGGGAAAACCCCCAGAACGCCTTTTGAAATTTATCAACAGGGACTTTGGATCCTATGATGGCATGATTCGACAATTTATGGATGCTGCATCAACTCAATTTGGTTCTGGATGGGTTTGGCTTTGTTACAAAACAAGCAAGTTGCCTCATGTGAAATCAAGAAGCCCAATCCCATCTGATAATTATGGTAGACTGGTCATCTCAAAGTCTCCGAATGCCATCAATCCTCTTGTCTGGGGTCACTCTCCACTCCTTGCAATTGATCTTTGGGAGCATGCATACTACCTGGATTATGAGGATCGGAGATCTGACTATGTCTCCACATTTCTAGAGAAGCTTGTGTCATGGGAAACTGTTGAGTCCAGGCTTAAGAAGGCCGTACAACGGGCAGTAGAAAGAGATGAATATGTTAGCACAAAGCATATAAGGAAGCAACTTTTAGCT-CGGGCAAAGAGCCAAATCAGAGCTATGCCTCAGCA-GGTCAATGGGGATGCAAGAGAGCAGACCAGCGGTCAAGAGAAGTCCCTAGGGGTGTG-ACAACGGAGCCAAGTAAGCTACGGCAGGTGG-GTCATGTTGCCGAGTTGAACCATGGGGATGATGGACTTGTAACACAGGAAGCTAGAGCAGCTGATCAATCTTCAAGGTAGCAGTATCCGAAGATTGTATGCACATACTGTGGGCAACCCTTTGCTTAATAGCAAATGTTGTCGTACAGGCAGCTTCACAGTTTCTGTCGCTGTCGATGAATAGATCTGTAGTTCGTGACACTGCAGCAAATACAAGTCACAAACCCAGAGTCATGTGCGAGCTAAATTTTGATAGGAGTAATTAGGTTTGAGTATCATAGAGATAGACAAGAATTAGTCACTTGGAGCAAATGAGCCTGACATCTTGTATTCCTGTGCTGTCCATGTTTGAATCCTGAACTTCTGATTGACAAACCAAAGAAAATTGTAGTTCCGAAGAAATACATCACTGGTGTCAGTAATGTTTGTTTCGACAGGCTCTCATGAATTGCCATGGTGGTTGCTTGGTGCTTGGTAATGAGGACCTACAGTTTTGTCATAG] [+] EMBL AK111656 [CGTCTCCTCGAAGCTTTCTCCCAAACTGCTCGTCCATGGCGTTCGCCACACTGGTGGGAGTGGGAGGCCTATCGCCTGCCCTCTTCTCCCCCTCCCGCCCCCTCTCCTGCTCCAGCTCCACCTCCGTCTCGGCCCCGTTCATCCTCCGCGCCGGCGGCGGCGGCGACGCCCG GCGGCATGGCCTCCGACGCCTCGTCACCCCACTGAGAGGGAGCGCCTGCAGGGGAGAGAGTACGAACTCACGTGTACTCCAGTGTGCCAATGAGGCTAATGTGGTGACCGAGGATGACATTGTGAACGATGGTATCGATGATGAAACCGCTTCCGATGCTGAAATGGATGAGGATGCTGAAGCAAATGGTGATGAGTCGTCAGGCACTGATGAAGATGCTTCTGTCTCCTGGATAGAGCAGCAGCCTCTTCCTTATCCTTCAGATGCCCTAGAGCCATACATCAGCAAGGAGACGGTGGAACAGCACTGGGGAGTTCATCAGAACATTCACGTCGAGAGGCTCAATGGCATGATTGGTGGCAGTGAGTGGGAGGGGATGTCGCTGGGGCAGATGATGCTATCCTCCTTCAATGAGGGCAGGGAGGCACCCCATCCCCCCTTCTTCCATGCTGCACAGATATGGAACCATGATTTCTATTGGCGATCTATGCAACCTGGTGGCGGGGGAAAACCCCCAGAACGCCTTTTGAAATTTATCAACAGGGACTTTGGATCCTATGATGGCATGATTCGACAATTTATGGATGCTGCATCAACTCAATTTGGTTCTGGATGGGTTTGGCTTTGTTACAAAACAAGCAAGTTGCCTCATGTGAAATCAAGAAGCCCAATCCCATCTGATAATTATGGTAGACTGGTCATCTCAAAGTCTCCGAATGCCATCAATCCTCTTGTCTGGGGTCACTCTCCACTCCTTGCAATTGATCTTTGGGAGCATGCATACTACCTGGATTATGAGGATCGGAGATCTGACTATGTCTCCACATTTCTAGAGAAGCTTGTGTCATGGGAAACTGTTGAGTCCAGGCTTAAGAAGGCCGTACAACGGGCAGTAGAAAGAGATGAATATGTTAGCACAAAGCATATAAGGAAGCAACTTTTAGCT CGGGCAAAGAGCCAAATCAGAGCTATGCCTCAGCA GGTCAATGGGGATGCAAGAGAGCAGACCAGCGGTCAAGAGAAGTCCCTAGGGGTGTG ACAACGGAGCCAAGTAAGCTACGGCAGGTGG GTCATGTTGCCGAGTTGAACCATGGGGATGATGGACTTGTAACACAGGAAGCTAGAGCAGCTGATCAATCTTCAAGGTAGCAGTATCCGAAGATTGTATGCACATACTGTGGGCAACCCTTTGCTTAATAGCAAATGTTGTCGTACAGGCAGCTTCACAGTTTCTGTCGCTGTCGATGGATAGATCTGTAGTTCGTGACACTGCAGCAAATACAAGTCACAAACCCAGAGTCATGTGCGAGCTAAATTTTGATAGGAGTAATTAGGTTTGAGTATCATAGAGATAGACAAGAATTAGTCACTTGGAGCAAATGAGCCTGACATCTTGTATTCCTGTGCTGTCCATGTTTGAATCCTGAACTTCTGATTGACAAACCAAAGAAAATTGTAGTTCCGAAGAAATACATCACTGGTGTCAGTAA ] [+] EMBL CB646657 [ TCGTCCATGGCGTTCGCCACACTGGTGGGAGTGGGAGGCCTATCGCCTGCCCTCTTCTCCCCCTCCCGCCCCCTCTCCTGCTCCAGCTCCACCTCCGTCTCGGCCCCGTTCATCCTCCGCGCCGGCGGCGGCGGCGACGCCCG GCGGCATGGCCTCCGACGCCTCGTCACCCCACTGAGAGGGAGCGCCTGCAGGGGAGAGAGTACGAACTCACGTGTACTCCAGTGTGCCAATGAGGCTAATGTGGTGACCGAGGATGACATTGTGAACGATGGTATCGATGATGAAACCGCTTCCGATGCTGAAATGGATGAGGATGCTGAAGCAAATGGTGATGAGTCGTCAGGCACTGATGAAGATGCTTCTGTCTCCTGGATAGAGCAGCAGCCTCTTCCTTATCCTTCAGATGCCCTAGAGCCATACATCAGCAAGGAGACGGTGGAACAGCACTGGGGAGTTCATCAGAACATTCACGTCGAGAGGCTCAATGGCATGATTGGTGGCAGTGAGTGGGAGGGGATGTCGCTGGGGCAGATGATGCTATCCTCCTTCAATGAGGGCAGGGAGGCACCCCATCCCCCCTTCTTCCATGCTGCACAGATATGGAACCATGATTTCTATTGGCGATCTATGCAACCTGGTGGCGGGGGAAAACCCCCAGAACGCCTTTTGAAATTTATCAACAGGGACTTTGGATCCTATGATGGCATGATTCGACAATTTATGGATGCTGCATCAACTCAATTTGGTTCTGGATGGGTTTG ] [+] EMBL CB620064 [ TCGTCCATCCTGTAAAGCACACTGGTGGGAGTGGGAGGCCTATCGCCTGCCCTCTTCTCCCCCTCCCGCCCCCTCTCCTGCTCCAGCTCCACCTCCGTCTCGGCCCCGTTCATCCTCCGCGCCGGCGGCGGCGGCGACGCCCG GCGGCATGGCCTCCGACGCCTCGTCACCCCACTGAGAGGGAGCGCCTGCAGGGGAGAGAGTACGAACTCACGTGTACTCCAGTGTGCCAATGAGGCTAATGTGGTGACCGAGGATGACATTGTGAACGATGGTATCGATGATGAAACCGCTTCCTATGCTGAAATGGATGAGGATGCTGAAGCAAATGGTGATGAGTCGTCAGGCACTGATGAAGATGCTTCTGTCTCCTGGATAGAGCAGCAGCCTCTTCCTTATCCTTCAGATGCCCTAGAGCCATACATCAGCAAGGAGACGGTGGAACAGCACTGGGGAGTTCATCAGAACATTCACGTCGAGAGGCTCAATGGCATGATTGGTGGCAGTGAGTGGGAGGGGATGTCGCTGGGGCAGATGATGCTATCCTCCTTCAATGAGGGCAGGGAGGCACCCCATCCCCCCTTCTTCCATGCTGCACAGATATGGAACCATGATTTCTATTGGCGATCTATGCAACCTGGTGGCGGGGGAAAACCCCCAGAACGCCTTTTGAAATTTATCAACAGGGACTTTGGATCCTATGATGGCATGATTCCACAATTTATGGATGCTGCATCAACTCAATTTGGTTCTGG ] [+] EMBL CB650517 [ TCGCCACACTGGTGGGAGTGGGAGGCCTATCGCCTGCCCTCTTCTCCCCCTCCCGCCCCCTCTCCTGCTCCAGCTCCACCTCCGTCTCGGCCCCGTTCATCCTCCGCGCCGGCGGCGGCGGCGACGCCCGTGCGGCATGGCCTCCGACGCCTCGTCACCCCACTGAGAGGGAGCGCCTGCAGGGGAGAGAGTACGAACTCACGTGTACTCCAGTGTGCCAATGAGGCTAATGTGGTGACCGAGGATGACATTGTGAACGATGGTATCGATGATGAAACCGCTTCCGATGCTGAAATGGATGAGGATGCTGAAGCAAATGGTGATGAGTCGTCAGGCACTGATGAAGATGCTTCTGTCTCCTGGATAGAGCAGCAGCCTCTTCCTTATCCTTCAGATGCCCTAGAGCCATACATCAGCAAGGAGACGGTGGAACAGCACTGGGGAGTTCATCAGAACATTCACGTCGAGAGGCTCAATGGCATGATTGGTGGCAGTGAGTGGGAGGGGATGTCGCTGGGGCAGATGATGCTATCCTCCTTCAATGAGGGCAGGGAGGCACCCCATCCCCCCTTCTTCCATGCTGCACAGATATGGAACCATGATTTCTATTGGCGATCTATGCAACCTGGTGGCGGGGGAAAACCCCCAGAACGCCTTTTGAAATTTATCAACAGGGACTTTGGATCCTATGATGGCATGATTCGACAATTTATGGATGCTGCATCAACTCAATTTGGTTCTGGATGGGTTTGGCTTTGTTACAAAACAAGCAAGTTGCCTCATGTGAAATCAAGAAGCCCAATCCCATCTGATAATTATGGTAGACTGGTCATCTCAAAGTCT CGAATGC ] [+] EMBL CB639299 [ CACACTGGTGGGAGTGGGAGGCCTATCGCCTGCCCTCTTCTCCCCCTCCCGCCCCCTCTCCTGCTCCAGCTCCACCTCCGTCTCGGCCCCGTTCATCCTCCGCGCCGGCGGCGGCGGCGACGCCCG GCGGCATGGCCTCCGACGCCTCGTCACCCCACTGAGAGGGAGCGCCTGCACGGGAGAGAGTACGAACTCACGTGTACTCCAGTGTGCCAATGAGGCTAATGTGGTGACCGACGATGACATTGTGAACGATGGTATCGATGATGAAACCGCTTCCGATGCTGAAATGGATGAGGATGCTGAAGCAAATGGTGATGAGTCGTCAGGCACTGATGAAGATGCTTCTGTCTCCTGGATAGAGCAGCAGCCTCTTCCTTATCCTTCAGATGCCCTAGAGCCATACATCAGCAAGGAGACGGTGGAACAGCACTGGGGAGTTCATCAGAACATTCACGTCGAGAGGCTCAATGGCATGATTGGTGGCAATGAGTGGGAGGGGATGTCGCTGGGGCAGATGATGCTATCCTCCTTCAATGAAGGCAGGGAGGCACCCCATCCCCCCTTCTTCCATGCTGCACAGGTATcattcc ] [+] EMBL BE229741 [ ATGATGCTNTCCTCCTTCAATGAGGGCAGGGAGGCACCCCATCCCCCCTTCTTCCATGCTGCACAGATATGGAACCATGATTTCTATTGGCGAT TATGCAACCTGGTGGCGGGGGAAAACCCCCANAACGCCTTTTGAAATTTATCAACAGGGACTTTGGATCCTATGATGGCATGATTCGACAATTTATGGATGCTGCATCAACTCAATTTGGTTCTGGATGGGTTTGGCTTTGTTACAAAACAAGCAAGTTGCCTCATGTGAAATCAAAAAGCCCAATCCCATCTGATAATTATGGTAGACTGGTCATCTCAAAGTCTCCGAATGCCATCAATCCTCTTGTCTGGGGTCACTCTCCACTCCTTGCAATTGATCTTTGGGAGCATGCATACTACCTGGATTATGANGATCGGANATCTGACTATGTCTCCACATTTCTAGAGAAGCTTGTGTCATGGGAAACTGTTGANTCCANGCTTAAGAANGCCGTACAACNGGCANTAAAAAGANATGAATATGTTAGCACAAANCATATAAGGAAGCAACTTTTANCT CGGGCAAANA CCAAATCANAACTATGCCTCA CA NGTC ] [-] EMBL CB650518 [ GCCCAATCCCATCTGATAATTATGGTAGACTGGTCATCTCAAAGTCTCCGAATGCCATCAATCCTCTTGTCTGGGGTCACTCTCCACTCCTTGCAATTGATCTTTGGGAGCATGCATACTACCTGGATTATGAGGATCGGAGATCTGACTATGTCTCCACATTTCTAGAGAAGCTTGTGTCATGGGAAACTGTTGAGTCCAGGCTTAAGAAGGCCGTACAACGGGCAGTAGAAAGAGATGAATATGTTAGCACAAAGCATATAAGGAAGCAACTTTTAGCT CGGGCAAAGAGCCAAATCAGAGCTATGCCTCAGCA GGTCAATGGGGATGCAAGAGAGCAGACCAGCGGTCAAGAGAAGTCCCTAGGGGTGTG ACAACGGAGCCAAGTAAGCTACGGCAGGTGG GTCATGTTGCCGAGTTGAACCATGGGGATGATGGACTTGTAACACAGGAAGCTAGAGCAGCTGATCAATCTTCAAGGTAGCAGTATCCGAAGATTGTATGCACATACTGTGGGCAACCCTTTGCTTAATAGCAAATGTTGTCGTACAGGCAGCTTCACAGTTTCTGTCGCTGTCGATGAATAGATCTGTAGTTCGTGACACTGCAGCAAATACAAGTCACAAACCCAGAGTCATGTGCGAGCTAAATTTTGATAGGAGTAATTAGGTTTGAGTATCATAGAGATAGACAAGAATTAGTCACTTGGAGCAAATGAGCCTGACATCTTGTATTCCTGTGCTGTCCATGTTTGAATCCTGAACTTTTGAAGGGCAAACCAAAGAAAATTGTAGTTCCGAAGAA ] [+] EMBL CB644041 [ ATTATGAGGATCGGAGATCTGACTATGTCTCCACATTTCTAGAGAAGCTTGTGTCATGGGAAACTGTTGAGTCCAGGCTTAAGAAGGCCGTACAACGGGCAGTAGAAAGAGATGAATATGTTAGCACAAAGCATATAAGGAAGCAACTTTTAGCT CGGGCAAAGAGCCAAATCAGAGCTATGCCTCAGCA GGTCAATGGGGATGCAAGAGAGCAGACCAGCGGTCAAGAGAAGTCCCTAGGGGTGTG ACAACGGAGCCAAGTAAGCTACGGCAGGTGG GTCATGTTGCCGAGTTGAACCATGGGGATGATGGACTTGTAACACAGGAAGCTAGAGCAGCTGATCAATCTTCAAGGTAGCAGTATCCGAAGATTGTATGCACATACTGTGGGCAACCCTTTGCTTAATAGCAAATGTTGTCGTACAGGCAGCTTCACAGTTTCTGTCGCTGTCGATGAATAGATCTGTAGTTCGTGACACTGCAGCAAATACAAGTCACAAACCCAGAGTCATGTGCGAGCTAAATTTTGATAGGAGTAATTAGGTTTGAGTATCATAGAGATAGACAAGAATTAGTCACTTGGAGCAAATGAGCCTGACATCTTGTATTCCTGTGCTGTCCATGTTTGAATCCTGAACTTCTGATTGACAAACCAAAGAAAATTGTAGTTCCGAAGAAATACATCACTGGTGTCAGTA ] [-] EMBL CB620065 [ GTGTCATGGGAAACTGTTGAGTCCAGGCTTAAGAAGGCCGTACAACGGGCAGTAGAAAGAGATGAATATGTTAGCACAAAGCATATAAGGAAGCAACTTTTAGCT CGGGCAAAGAGCCAAATCAGAGCTATGCCTCAGCA GGTCAATGGGGATGCAAGAGAGCAGACCAGCGGTCAAGAGAAGTCCCTAGGGGTGTG ACAACGGAGCCAAGTAAGCTACGGCAGGTGG GTCATGTTGCCGAGTTGAACCATGGGGATGATGGACTTGTAACACAGGAAGCTAGAGCAGCTGATCAATCTTCAAGGTAGCAGTATCCGAAGATTGTATGCACATACTGTGGGCAACCCTTTGCTTAATAGCAAATGTTGTCGTACAGGCAGCTTCACAGTTTCTGTCGCTGTCGATGAATAGATCTGTAGTTCGTGACACTGCAGCAAATACAAGTCACAAACCCAGAGTCATGTGCGAGCTAAATTTTGATAGGAGTAATTAGGTTTGAGTATCATAGAGATAGACAAGAATTAGTCACTTGGAGCAAATGAGCCTGACATCTTGTATTCCTGTGCTGTCCATGTTTGAATCCTGAACTTCTGATTGACAAACCAAAGAAAATTGTAGTTCCGAAGAAATACATCACTGGTGTCAGTAATGTTTGTTTCGACAGGCTCTCATGAATTGCCATGGTGGTTGCTTGGTGCTTGGTAATGAGGACCTACAGTTTTGTCATAG] [-] EMBL CB646658 [ atTATGTTAGCACAAAGCATATAAGGAAGCAACTTTTAGCTGGGGGCAAAGAGCCAAATCAGAGCTATGCCTCAGCAGGGTCAATGGGGATGCAAGAGAGCAGACCAGCGGTCAAGAGAAGTCCCTAGGGGTGTG ACAACGGAGCCAAGTAAGCTACGGCAGGTGG GTCATGTTGCCGAGTTGAACCATGGGGATGATGGACTTGTAACACAGGAAGCTAGAGCAGCTGATCAATCTTCAAGGTAGCAGTATCCGAAGATTGTATGCACATACTGTGGGCAACCCTTTGCTTAATAGCAAATGTTGTCGTACAGGCAGCTTCACAGTTTCTGTCGCTGTCGATGAATAGATCTGTAGTTCGTGACACTGCAGCAAATACAAGTCACAAACCCAGAGTCATGTGCGAGCTAAATTTTGATAGGAGTAATTAGGTTTGAGTATCATAGAGATAGACAAGAATTAGTCACTTGGAGCAAATGAGCCTGACATCTTGTATTCCTGTGCTGTCCATGTTTGAATCCTGAACTTCTGATTGACAAACCAAAGAAAATTGTAGTTCCGAAGAAATACATCACTGGTGTCAGTAATGTTTGTTTCGACAGGCTCTCATGAATTGCCATGGTGGTTGCTTGGTACT ] [-] EMBL AW070018 [ cccggGCG GGTCAATGGGGATGCAAGAGAGCAGACCAGCGGTCAAGAGAAGTCCCTAGGGGTGTG ACAACGGAGCCAAGTAAGCTACGGCAGGTGG GTCATGTTGCCGAGTTGAACCATGGGGATGATGGACTTGTAACACAGGAAGCTAGAGCAGCTGATCAATCTTCAAGGTAGCAGTATCCGAAGATTGTATGCACATACTGTGGGCAACCCTTTGCTTAATAGCAAAT ] [+] EMBL BQ905982 [ gtTGTGAACAACGGAGCCAAGTAAGCTAC GCAGTTGGTGTCATGTTGCCGAGTTGAACCATGGGGATGATGGACTTGTAACACAGGAAGCTAGAGCAGCTGATCAATCTTCAAGGTA CAGTATCCGAAGATTGTATGCACATACTGTGGGCAACCCTTTGCTTAATAGCAAATGTTGTCGTACAGGCAGCTTCACAGTTTCTGTCGCTGTCGATGAATAGATCTGTAGTTCGTGACACTGCAGCAAATACAAGTCACAAACCCAGAGTCATGTGCGAGCTAAATTTTGATAGGAGTAATTAGGTTTGAGTATCATAGAGATAGACAAGAATTAGTCACTTGGAGCAAATGAGCCTGACATCTTGTATTCCTGTGCTGTCCATGTTTGAATCCTGAACTTCTGATTGACAAACCAAAGAAAATTGTAGTTCCGAAGAAAaaaa ] consensusID : consensus_13789#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1416 fasta sequence [CGATGATGAAACCGCTTCCGATGCTGAAATGGATGAGGATGCTGAAGCAAATGATGATGAGTCGTCAGGCACTGATGAAGATGCTTCTGTCTCCTGGATAGAGCAGCAGCCTCTTCCTTATCCTTCAGATGCCCTAGAGCCATACATCAGCAAGGAGACGGTGGAACAGCACTGGGGAGTTCATCAGAACATTCACGTCGAGAGGCTCAATGGCATGATTGGTGGCAGTGAGTGGGAGGGGATGTCGCTGGGGCAGATGATGCTATCCTCCTTCAATGAGGGCAGGGAGGCACCCCATCCCCCCTTCTTCCATGCTGCACAGGTATCATTCCGTATGCTGAGCTGTATGTCCTCCATATGACTAATTACTGGACATTCTTTTAGATATGGAACCATGATTTCTATTGGCGATCTATGCAACCTGGTGGCGGGGGAAAACCCCCAGAACGCCTTTTGAAATTTATCAACAGGGACTTTGGATCCTATGATGGCATGATTCGACAATTTATGGATGCTGCATCAACTCAATTTGGTTCTGGATGGGTTTGGCTTTGTTACAAAACAAGCAAGTTGCCTCATGTGAAATCAAGAAGCCCAATCCCATCTGATAATTATGGTAGACTGGTCATCTCAAAGTCTCCGAATGCCATCAATCCTCTTGTCTGGGGTCACTCTCCACTCCTTGCAATTGATCTTTGGGAGCATGCATACTACCTGGATTATGAGGATCGGAGATCTGACTATGTCTCCACATTTCTAGAGAAGCTTGTGTCATGGGAAACTGTTGAGTCCAGGCTTAAGAAGGCCGTACAACGGGCAGTAGAAAGAGATGAATATGTTAGCACAAAGCATATAAGGAAGCAACTTTTAGCTCGGGCAAAGAGCCAAATCAGAGCTATGCCTCAGCAGGTCAATGGGGATGCAAGAGAGCAGACCAGCGGTCAAGAGAAGTCCCTAGGGGTGTGACAACGGAGCCAAGTAAGCTACGGCAGGTGGGTCATGTTGCCGAGTTGAACCATGGGGATGATGGACTTGTAACACAGGAAGCTAGAGCAGCTGATCAATCTTCAAGGTAGCAGTATTCGAAGATTGTATGCACATACTGTGGGCAACCCTTTGCTTAATAGCAAATGTTGTCGTACAGGCAGCTTCACAGTTTCTGTCGCTGTCGATGAATAGATCTGTAGTTCGTGACACTGCAGCAAATACAAGTCACAAACCCAGAGTCATGTGCGAGCTAAATTTTGATAGGAGTAATTAGGTTTGAGTATCATAGAGATAGACAAGAATTAGTCACTTGGAGCAAATGAGCCTGACATCTTGTATTCCTGTGCTGTCCATGTTTGAATCCTGAACTTCTGATTGACAAACCAAAGAAAATTGTAGTTCCGAAGAAATACATCACTGGTGTCAGTA] [+] EMBL AK112038 [CGATGATGAAACCGCTTCCGATGCTGAAATGGATGAGGATGCTGAAGCAAATGATGATGAGTCGTCAGGCACTGATGAAGATGCTTCTGTCTCCTGGATAGAGCAGCAGCCTCTTCCTTATCCTTCAGATGCCCTAGAGCCATACATCAGCAAGGAGACGGTGGAACAGCACTGGGGAGTTCATCAGAACATTCACGTCGAGAGGCTCAATGGCATGATTGGTGGCAGTGAGTGGGAGGGGATGTCGCTGGGGCAGATGATGCTATCCTCCTTCAATGAGGGCAGGGAGGCACCCCATCCCCCCTTCTTCCATGCTGCACAGGTATCATTCCGTATGCTGAGCTGTATGTCCTCCATATGACTAATTACTGGACATTCTTTTAGATATGGAACCATGATTTCTATTGGCGATCTATGCAACCTGGTGGCGGGGGAAAACCCCCAGAACGCCTTTTGAAATTTATCAACAGGGACTTTGGATCCTATGATGGCATGATTCGACAATTTATGGATGCTGCATCAACTCAATTTGGTTCTGGATGGGTTTGGCTTTGTTACAAAACAAGCAAGTTGCCTCATGTGAAATCAAGAAGCCCAATCCCATCTGATAATTATGGTAGACTGGTCATCTCAAAGTCTCCGAATGCCATCAATCCTCTTGTCTGGGGTCACTCTCCACTCCTTGCAATTGATCTTTGGGAGCATGCATACTACCTGGATTATGAGGATCGGAGATCTGACTATGTCTCCACATTTCTAGAGAAGCTTGTGTCATGGGAAACTGTTGAGTCCAGGCTTAAGAAGGCCGTACAACGGGCAGTAGAAAGAGATGAATATGTTAGCACAAAGCATATAAGGAAGCAACTTTTAGCTCGGGCAAAGAGCCAAATCAGAGCTATGCCTCAGCAGGTCAATGGGGATGCAAGAGAGCAGACCAGCGGTCAAGAGAAGTCCCTAGGGGTGTGACAACGGAGCCAAGTAAGCTACGGCAGGTGGGTCATGTTGCCGAGTTGAACCATGGGGATGATGGACTTGTAACACAGGAAGCTAGAGCAGCTGATCAATCTTCAAGGTAGCAGTATTCGAAGATTGTATGCACATACTGTGGGCAACCCTTTGCTTAATAGCAAATGTTGTCGTACAGGCAGCTTCACAGTTTCTGTCGCTGTCGATGAATAGATCTGTAGTTCGTGACACTGCAGCAAATACAAGTCACAAACCCAGAGTCATGTGCGAGCTAAATTTTGATAGGAGTAATTAGGTTTGAGTATCATAGAGATAGACAAGAATTAGTCACTTGGAGCAAATGAGCCTGACATCTTGTATTCCTGTGCTGTCCATGTTTGAATCCTGAACTTCTGATTGACAAACCAAAGAAAATTGTAGTTCCGAAGAAATACATCACTGGTGTCAGTA] consensusID : consensus_13789#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 144 fasta sequence [CATAGAGATAGACAAGAATTAGTCACTTGGAGCAAATGAGCCTGACATCTTGTATTCCCGTGCTGTCCATGTTTGAATCCTGAACTTCTGATTGACAAACCAAAGAAAATTGTAGTTCCGAAGAAATAAAAAAAAAAAAAAAAA] [-] EMBL CF302476 [CATAGAGATAGACAAGAATTAGTCACTTGGAGCAAATGAGCCTGACATCTTGTATTCCCGTGCTGTCCATGTTTGAATCCTGAACTTCTGATTGACAAACCAAAGAAAATTGTAGTTCCGAAGAAATAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13789#0 CGTCTCCTCGAAGCTTTCTCCCAAACTGCTCGTCCATGGCGTTCGCCACACTGGTGGGAG 60 consensus_13789#1 ------------------------------------------------------------ consensus_13789#2 ------------------------------------------------------------ consensus_13789#0 TGGGAGGCCTATCGCCTGCCCTCTTCTCCCCCTCCCGCCCCCTCTCCTGCTCCAGCTCCA 120 consensus_13789#1 ------------------------------------------------------------ consensus_13789#2 ------------------------------------------------------------ consensus_13789#0 CCTCCGTCTCGGCCCCGTTCATCCTCCGCGCCGGCGGCGGCGGCGACGCCCGGCGGCATG 180 consensus_13789#1 ------------------------------------------------------------ consensus_13789#2 ------------------------------------------------------------ consensus_13789#0 GCCTCCGACGCCTCGTCACCCCACTGAGAGGGAGCGCCTGCAGGGGAGAGAGTACGAACT 240 consensus_13789#1 ------------------------------------------------------------ consensus_13789#2 ------------------------------------------------------------ consensus_13789#0 CACGTGTACTCCAGTGTGCCAATGAGGCTAATGTGGTGACCGAGGATGACATTGTGAACG 300 consensus_13789#1 ------------------------------------------------------------ consensus_13789#2 ------------------------------------------------------------ consensus_13789#0 ATGGTATCGATGATGAAACCGCTTCCGATGCTGAAATGGATGAGGATGCTGAAGCAAATG 360 consensus_13789#1 -------CGATGATGAAACCGCTTCCGATGCTGAAATGGATGAGGATGCTGAAGCAAATG 53 consensus_13789#2 ------------------------------------------------------------ consensus_13789#0 GTGATGAGTCGTCAGGCACTGATGAAGATGCTTCTGTCTCCTGGATAGAGCAGCAGCCTC 420 consensus_13789#1 ATGATGAGTCGTCAGGCACTGATGAAGATGCTTCTGTCTCCTGGATAGAGCAGCAGCCTC 113 consensus_13789#2 ------------------------------------------------------------ consensus_13789#0 TTCCTTATCCTTCAGATGCCCTAGAGCCATACATCAGCAAGGAGACGGTGGAACAGCACT 480 consensus_13789#1 TTCCTTATCCTTCAGATGCCCTAGAGCCATACATCAGCAAGGAGACGGTGGAACAGCACT 173 consensus_13789#2 ------------------------------------------------------------ consensus_13789#0 GGGGAGTTCATCAGAACATTCACGTCGAGAGGCTCAATGGCATGATTGGTGGCAGTGAGT 540 consensus_13789#1 GGGGAGTTCATCAGAACATTCACGTCGAGAGGCTCAATGGCATGATTGGTGGCAGTGAGT 233 consensus_13789#2 ------------------------------------------------------------ consensus_13789#0 GGGAGGGGATGTCGCTGGGGCAGATGATGCTATCCTCCTTCAATGAGGGCAGGGAGGCAC 600 consensus_13789#1 GGGAGGGGATGTCGCTGGGGCAGATGATGCTATCCTCCTTCAATGAGGGCAGGGAGGCAC 293 consensus_13789#2 ------------------------------------------------------------ consensus_13789#0 CCCATCCCCCCTTCTTCCATGCTGCACAG------------------------------- 629 consensus_13789#1 CCCATCCCCCCTTCTTCCATGCTGCACAGGTATCATTCCGTATGCTGAGCTGTATGTCCT 353 consensus_13789#2 ------------------------------------------------------------ consensus_13789#0 -------------------------------ATATGGAACCATGATTTCTATTGGCGATC 658 consensus_13789#1 CCATATGACTAATTACTGGACATTCTTTTAGATATGGAACCATGATTTCTATTGGCGATC 413 consensus_13789#2 ------------------------------------------------------------ consensus_13789#0 TATGCAACCTGGTGGCGGGGGAAAACCCCCAGAACGCCTTTTGAAATTTATCAACAGGGA 718 consensus_13789#1 TATGCAACCTGGTGGCGGGGGAAAACCCCCAGAACGCCTTTTGAAATTTATCAACAGGGA 473 consensus_13789#2 ------------------------------------------------------------ consensus_13789#0 CTTTGGATCCTATGATGGCATGATTCGACAATTTATGGATGCTGCATCAACTCAATTTGG 778 consensus_13789#1 CTTTGGATCCTATGATGGCATGATTCGACAATTTATGGATGCTGCATCAACTCAATTTGG 533 consensus_13789#2 ------------------------------------------------------------ consensus_13789#0 TTCTGGATGGGTTTGGCTTTGTTACAAAACAAGCAAGTTGCCTCATGTGAAATCAAGAAG 838 consensus_13789#1 TTCTGGATGGGTTTGGCTTTGTTACAAAACAAGCAAGTTGCCTCATGTGAAATCAAGAAG 593 consensus_13789#2 ------------------------------------------------------------ consensus_13789#0 CCCAATCCCATCTGATAATTATGGTAGACTGGTCATCTCAAAGTCTCCGAATGCCATCAA 898 consensus_13789#1 CCCAATCCCATCTGATAATTATGGTAGACTGGTCATCTCAAAGTCTCCGAATGCCATCAA 653 consensus_13789#2 ------------------------------------------------------------ consensus_13789#0 TCCTCTTGTCTGGGGTCACTCTCCACTCCTTGCAATTGATCTTTGGGAGCATGCATACTA 958 consensus_13789#1 TCCTCTTGTCTGGGGTCACTCTCCACTCCTTGCAATTGATCTTTGGGAGCATGCATACTA 713 consensus_13789#2 ------------------------------------------------------------ consensus_13789#0 CCTGGATTATGAGGATCGGAGATCTGACTATGTCTCCACATTTCTAGAGAAGCTTGTGTC 1018 consensus_13789#1 CCTGGATTATGAGGATCGGAGATCTGACTATGTCTCCACATTTCTAGAGAAGCTTGTGTC 773 consensus_13789#2 ------------------------------------------------------------ consensus_13789#0 ATGGGAAACTGTTGAGTCCAGGCTTAAGAAGGCCGTACAACGGGCAGTAGAAAGAGATGA 1078 consensus_13789#1 ATGGGAAACTGTTGAGTCCAGGCTTAAGAAGGCCGTACAACGGGCAGTAGAAAGAGATGA 833 consensus_13789#2 ------------------------------------------------------------ consensus_13789#0 ATATGTTAGCACAAAGCATATAAGGAAGCAACTTTTAGCTCGGGCAAAGAGCCAAATCAG 1138 consensus_13789#1 ATATGTTAGCACAAAGCATATAAGGAAGCAACTTTTAGCTCGGGCAAAGAGCCAAATCAG 893 consensus_13789#2 ------------------------------------------------------------ consensus_13789#0 AGCTATGCCTCAGCAGGTCAATGGGGATGCAAGAGAGCAGACCAGCGGTCAAGAGAAGTC 1198 consensus_13789#1 AGCTATGCCTCAGCAGGTCAATGGGGATGCAAGAGAGCAGACCAGCGGTCAAGAGAAGTC 953 consensus_13789#2 ------------------------------------------------------------ consensus_13789#0 CCTAGGGGTGTGACAACGGAGCCAAGTAAGCTACGGCAGGTGGGTCATGTTGCCGAGTTG 1258 consensus_13789#1 CCTAGGGGTGTGACAACGGAGCCAAGTAAGCTACGGCAGGTGGGTCATGTTGCCGAGTTG 1013 consensus_13789#2 ------------------------------------------------------------ consensus_13789#0 AACCATGGGGATGATGGACTTGTAACACAGGAAGCTAGAGCAGCTGATCAATCTTCAAGG 1318 consensus_13789#1 AACCATGGGGATGATGGACTTGTAACACAGGAAGCTAGAGCAGCTGATCAATCTTCAAGG 1073 consensus_13789#2 ------------------------------------------------------------ consensus_13789#0 TAGCAGTATCCGAAGATTGTATGCACATACTGTGGGCAACCCTTTGCTTAATAGCAAATG 1378 consensus_13789#1 TAGCAGTATTCGAAGATTGTATGCACATACTGTGGGCAACCCTTTGCTTAATAGCAAATG 1133 consensus_13789#2 ------------------------------------------------------------ consensus_13789#0 TTGTCGTACAGGCAGCTTCACAGTTTCTGTCGCTGTCGATGAATAGATCTGTAGTTCGTG 1438 consensus_13789#1 TTGTCGTACAGGCAGCTTCACAGTTTCTGTCGCTGTCGATGAATAGATCTGTAGTTCGTG 1193 consensus_13789#2 ------------------------------------------------------------ consensus_13789#0 ACACTGCAGCAAATACAAGTCACAAACCCAGAGTCATGTGCGAGCTAAATTTTGATAGGA 1498 consensus_13789#1 ACACTGCAGCAAATACAAGTCACAAACCCAGAGTCATGTGCGAGCTAAATTTTGATAGGA 1253 consensus_13789#2 ------------------------------------------------------------ consensus_13789#0 GTAATTAGGTTTGAGTATCATAGAGATAGACAAGAATTAGTCACTTGGAGCAAATGAGCC 1558 consensus_13789#1 GTAATTAGGTTTGAGTATCATAGAGATAGACAAGAATTAGTCACTTGGAGCAAATGAGCC 1313 consensus_13789#2 ------------------CATAGAGATAGACAAGAATTAGTCACTTGGAGCAAATGAGCC 42 ****************************************** consensus_13789#0 TGACATCTTGTATTCCTGTGCTGTCCATGTTTGAATCCTGAACTTCTGATTGACAAACCA 1618 consensus_13789#1 TGACATCTTGTATTCCTGTGCTGTCCATGTTTGAATCCTGAACTTCTGATTGACAAACCA 1373 consensus_13789#2 TGACATCTTGTATTCCCGTGCTGTCCATGTTTGAATCCTGAACTTCTGATTGACAAACCA 102 **************** ******************************************* consensus_13789#0 AAGAAAATTGTAGTTCCGAAGAAATACATCACTGGTGTCAGTAATGTTTGTTTCGACAGG 1678 consensus_13789#1 AAGAAAATTGTAGTTCCGAAGAAATACATCACTGGTGTCAGTA----------------- 1416 consensus_13789#2 AAGAAAATTGTAGTTCCGAAGAAATAAAAAAAAAAAAAAAAA------------------ 144 ************************** * * * consensus_13789#0 CTCTCATGAATTGCCATGGTGGTTGCTTGGTGCTTGGTAATGAGGACCTACAGTTTTGTC 1738 consensus_13789#1 ------------------------------------------------------------ consensus_13789#2 ------------------------------------------------------------ consensus_13789#0 ATAG 1742 consensus_13789#1 ---- consensus_13789#2 ---- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||