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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13790#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1567 fasta sequence
[TCCAGATCGGGCGTTATGCGATGCGTTACCGATACGGAGGCGGAGCGGAGAGAACGTGACCTAGCCGCCTCGAGCGCCGCCGCCTTGCGGCGCACCGTCGCCGGCGTTGCTCCCCAGCTCCGCTCGCGTTGAAGCCACCTCGCCACCGCACGCGTCGCCCCGGCGCCGCTTCCCCTGCCCGGCGTGCGCCGTCGACACCGCTGCCCCCCCCCTCCCCTCGCGCGCTCCACGACCGCCCGGAGACACGGGCGGGGATGGTGTCGTCGATCTCGATGTACCGCGGGAACCTCCACCGGGCCGGGGCCGACACCGACCACCGCTGGCCGGCGCCGCGCCCCACCATCACCCCGTCGCGGTTCCGCAGCCTGCTCCGCAGCCGCACTCTCTCCCTCGCCCGCCTCGACGGCGCGGCGCGGGCCGACTCCGCGG---CCTCCTCCTCCACCTCCCGTCTCGCGGATGGAGACGCGGGGGTGGACGAGGAGGAGCAGGACGAGGAGGGGATGGAGATGGAGGAGGAGGAGGAGGAGGAGCAGGAGCAGGAGCAGGAGGAAGAGGATGGGCAAAATGAGCAGCAACCCCAAGAGGC-GGGGGAGGAGCAGGATGAGGGGGCAGTGGAGGATGCTGATATGGATGATGCCGGAGAGGTGCTCGTCGGAGGTGAAGATGCCCATGGCAATGGTGATGCTCAAGAAGGTCAAGGCGAAAGCGAAGGCTTTGATCCTAATCCAGAGGGGAGTTGTCTTGATGTAATTGAAGAAAGGAAAAAAGAATTGAGTGACAAGCTGGATACTTTAAACAAGAAAAAGCATGATCTTGTGCAGATGCTGAAGCAGATTTTAAATGCTGAAGAAGAAATCAGGATGCGCACCATGCAGGCCTCATTGCGCACTACTGTGCCTCAGCCATCAGAAAACGCAGCCGATGGAAGTTCTATTTCTAGGCTGGTGCCCAGAATGACCGTTGATGTCAATTTTAGTGATGTTGCTGGCGAGTCTGAGGCGGGTTCCAACCAGGGCACTCCTGGACGTCCCTTGCATCATGTTCATAGTATTTCTCCTTCAACAGCCTCTTTTGCTAGGTCTCCGTTCGGTTCTCTCCAACACAATTCTGGTCACACTCCAAGAAGTCCAGCGACTTTCTCGACAGCAAGTCCGTCCCGCTTTGCAGCTACTGGAAATCAAGGACATCCTATTGGCCATCCCTCAATATCATTGCCAGGAATTAACTTTGTAGCCTCTTCGCCTTCCCCCGCTGCCTCCGGCGGTTCTTCCTCCGTGTTCAGGGATTATCGCCCACCCAATTCAACATAACATCCATGGGCTAATCAGGACTGTACATATTCTGGAGGACAACTCCGTTATTAAGTTTTTTTTTCTCTTTTTCTTGAGAAGGGGGGGGGATTAATGTTATTTTGTGTTATTATGCTGTATTAAGGGAAACACTACCGAAATATTTTTCCATGACTCTCGTCCAAAATTATCCAATATGTGTAAAGTTTATCATGGCTGTAAGACGTTTTATGGACACCTATGTCTATATAGTAGTAGATTGAGCCGGTCGGGCAATA]
[+] EMBL AK109456 [TCCAGATCGGGCGTTATGCGATGCGTTACCGATACGGAGGCGGAGCGGAGAGAACGTGACCTAGCCGCCTCGAGCGCCGCCGCCTTGCGGCGCACCGTCGCCGGCGTTGCTCCCCAGCTCCGCTCGCGTTGAAGCCACCTCGCCACCGCACGCGTCGCCCCGGCGCCGCTTCCCCTGCCCGGCGTGCGCCGTCGACACCGCTGCCCCCCCCCTCCCCTCGCGCGCTCCACGACCGCCCGGAGACACGGGCGGGGATGGTGTCGTCGATCTCGATGTACCGCGGGAACCTCCACCGGGCCGGGGCCGACACCGACCACCGCTGGCCGGCGCCGCGCCCCACCATCACCCCGTCGCGGTTCCGCAGCCTGCTCCGCAGCCGCACTCTCTCCCTCGCCCGCCTCGACGGCGCGGCGCGGGCCGACTCCGCGGCCTCCTCCTCCTCCACCTCCCGTCTCGCGGATGGAGACGCGGGGGTGGACGAGGAGGAGCAGGACGAGGAGGGGATGGAGATGGAGGAGGAGGAGGAGGAGGAGCAGGAGCAGGAGCAGGAGGAAGAGGATGGGCAAAATGAGCAGCAACCCCAAGAGGC GGGGGAGGAGCAGGATGAGGGGGCAGTGGAGGATGCTGATATGGATGATGCCGGAGAGGTGCTCGTCGGAGGTGAAGATGCCCATGGCAATGGTGATGCTCAAGAAGGTCAAGGCGAAAGCGAAGGCTTTGATCCTAATCCAGAGGGGAGTTGTCTTGATGTAATTGAAGAAAGGAAAAAAGAATTGAGTGACAAGCTGGATACTTTAAACAAGAAAAAGCATGATCTTGTGCAGATGCTGAAGCAGATTTTAAATGCTGAAGAAGAAATCAGGATGCGCACCATGCAGGCCTCATTGCGCACTACTGTGCCTCAGCCATCAGAAAACGCAGCCGATGGAAGTTCTATTTCTAGGCTGGTGCCCAGAATGACCGTTGATGTCAATTTTAGTGATGTTGCTGGCGAGTCTGAGGCGGGTTCCAACCAGGGCACTCCTGGACGTCCCTTGCATCATGTTCATAGTATTTCTCCTTCAACAGCCTCTTTTGCTAGGTCTCCGTTCGGTTCTCTCCAACACAATTCTGGTCACACTCCAAGAAGTCCAGCGACTTTCTCGACAGCAAGTCCGTCCCGCTTTGCAGCTACTGGAAATCAAGGACATCCTATTGGCCATCCCTCAATATCATTGCCAGGAATTAACTTTGTAGCCTCTTCGCCTTCCCCCGCTGCCTCCGGCGGTTCTTCCTCCGTGTTCAGGGATTATCGCCCACCCAATTCAACATAACATCCATGGGCTAATCAGGACTGTACATATTCTGGAGGACAACTCCGTTATTAAGTTTTTTTTTCTCTTTTTCTTGAGAAGGGGGGGGGATTAATGTTATTTTGTGTTATTATGCTGTATTAAGGGAAACACTACCGAAATATTTTTCCATGACTCTCGTCCAAAATTATCCAATATGTGTAAAGTTTATCATGGCTGTAAGA ]
[+] EMBL AK109172 [ GTGACCTAGCCGCCTCGAGCGCCGCCGCCTTGCGGCGCACCGTCGCCGGCGTTGCTCCCCAGCTCCGCTCGCGTTGAAGCCACCTCGCCACCGCACGCGTCGCCCCGGCGCCGCTTCCCCTGCCCGGCGTGCGCCGTCGACACCGCTGCCCCCCCCCTCCCCTCGCGCGCTCCACGACCGCCCGGAGACACGGGCGGGGATGGTGTCGTCGATCTCGATGTACCGCGGGAACCTCCACCGGGCCGGGGCCGACACCGACCACCGCTGGCCGGCGCCGCGCCCCACCATCACCCCGTCGCGGTTCCGCAGCCTGCTCCGCAGCCGCACTCTCTCCCTCGCCCGCCTCGACGGCGCGGCGCGGGCCGACTCCGCGG CCTCCTCCTCCACCTCCCGTCTCGCGGATGGAGACGCGGGGGTGGACGAGGAGGAGCAGGACGAGGAGGGGATGGAGATGGAGGAGGAGGAGGAGGAGGAGCAGGAGCAGGAGCAGGAGGAAGAGGATGGGCAAAATGAGCAGCAACCCCAAGAGGC GGGGGAGGAACAGGATGAGGGGGCAGTGGAGGATGCTGATATGGATGATGCCGGAGAGGTGCTCGTCGGAGGTGAAGATGCCCATGGCAATGGTGATGCTCAAGAAGGTCAAGACGAAAGCGAAGGCTTCGATCCTAATCCAGAGGGGAGTTGTCTT ]
[+] EMBL CB644064 [ AGCGCCGCCGCCTTGCGGCGCACCGTCGCCGGCGTTGCTCCCCAGCTCCGCTCGCGTTGAAGCCACCTCGCCACCGCACGCGTCGCCCCGGCGCCGCTTCCCCTGCCCGGCGTGCGCCGTCGACACCGCTGCCCCCCCCCTCCCCTCGCGCGCTCCACGACCGCCCGGAGACACGGGCGGGGATGGTGTCGTCGATCTCGATGTACCGCGGGAACCTCCACCGGGCCGGGGCCGACACCGACCACCGCTGGCCGGCGCCGCGCCCCACCATCACCCCGTCGCGGTTCCGCAGCCTGCTCCGCAGCCGCACTCTCTCCCTCGCCCGCCTCGACGGCGCGGCGCGGGCCGACTCCGCGG CCTCCTCCTCCACCTCCCGTCTCGCGGATGGAGACGCGGGGGTGGACGAGGAGGAGCAGGACGAGGAGGGGATGGAGATGGAGGAGGAGGAGGAGGAGGAGCATGAGCAGGAGCAGGAGGAAGAGGATGGGCAAAATGAGCAGCAACCCCAAGAGGC GGGGGAGGAGCAGGATGAGGGGGCAGTGGAGGATGCTGATATGGATGATGCCGGAGAGGTGCTCGTCGGAGGTGAAGATGCCCATGGCAATGGTGATGCTCAAGAAGGTCAAGGCGAAAGCGAAGGCTTTGATCCTAATCCAGAGGGGAGTTGTCTTGATGTAATTGAAGAAAGGAAAAAAGAATTGAGTGACAAGCTGGATACTTTAAACAAGACAAAGCATGATCTTGTGCAGATGCTGAAGCAGATTTTAAATGCTGAAGAAaa ]
[+] EMBL AU172347 [ GTGGACGAGGAGGAGCAGGACGAGGAGGGGATGGAGATGGAGGAGGAGGAGGAGGAGGAGCAGGAGCAGGAGCAGGAGGAAGAGGATGGGCAAAATGAGCAGCAACCCCAAGAGGCNGGGGGAGGAGCAGGATGAGGGGGCAGTGGAGGATGCTGATATGGATGATGCCGGAGAGGTGCTCGTCGGAGGTGAAGATGCCCATGGCAATGGTGATGCTCAAGAAGGTCAAGGCGAAAGCGAAGGCTTTGATCCTAATCCAGAGGGGAGTTGTCTTGATGTAATTGAAGAAAGGAAAAAAGAATTGAGTGACAAGCTGGATACTTTAAACAAGAAAAAGCATGATCTTGTTCAGATGCTGAAGCAGATTTTAAATGCTGAAGAAGAAATCAGGATGCGCACCATGCAGGCCTCATTGCGCACTACTGTGCCTCAGCCATCAGAAAACGCAGCCGATGG ]
[+] EMBL CB679189 [ atgccttCGGAGAGGTGCTCGTCGGAGGTGAAGATGCCCATGGCAATGGTGATGCTCAAGAAGGTCAAGGCGAAAGCGAAGGCTTTGATCCTAATCCAGAGGGGAGTTGTCTTGATGTAATTGAAGAAAGGAAAAAAGAATTGAGTGACAAGCTGGATACTTTAAACAAGAAAAAGCATGATCTTGTGCAGATGCTGAAGCAGATTTTAAATGCTGAAGAAGAAATCAGGATGCGCACCATGCAGGCCTCATTGCGCACTACTGTGCCTCAGCCATCAGAAAACGCAGCCGATGGAAGTTCTATTTCTAGGCTGGTGCCCAGAATGACCGTTGATGTCAATTTTAGTGATGTTGCTGGCGAGTCTGAGGCGGGTTCCAACCAGGGCACTCCTGGACGTCCCTTGCATCATGTTCATAGTATTTCTCCTTCAACAGCCTCTTTTGCTAGGTCTCCGTTCGGTTCTCTCCAACACAATTCTGGTCACACTCCAAGAAGTCCAGCGACTTTCTCGACAGCAAGTCCGTCCCGCTTTGCAGCTACTGGAAATCAAGGACATCCTATTGGCCATCCCTCAATATCATTGCCAGGAATTAACTTTGTAGCCTCTTCGCCTTCCCCCGCTGCCTCCGGCGGTTCTTCCTCCGTGTTCAGGGATTATCGCCCACCCAATTCAACATAACATCCATGGGCTAATCANGACTGTACATATTCTGGAGGACAACTCCGTTATTAAGTTTTTTTTTCTCTTTTTCTTGAGAAAGGGGGGGGATTAATGTTATTTTG ]
[-] EMBL CB644069 [ GGTGATGCTCAAGAAGGTCAAGGCGAAAGCGAAGGCTTTGATCCTAATCCAGAGGGGAGTTGTCTTGATGTAATTGAAGAAAGGAAAAAAGAATTGAGTGACAAGCTGGATACTTTAAACAAGAAAAAGCATGATCTTGTGCAGATGCTGAAGCAGATTTTAAATGCTGAAGAAGAAATCAGGATGCGCACCATGCAGGCCTCATTGCGCACTACTGTGCCTCAGCCATCAGAAAACGCAGCCGATGGAAGTTCTATTTCTAGGCTGGTGCCCAGAATGACCGTTGATGTCAATTTTAGTGATGTTGCTGGCGAGTCTGAGGCGGGTTCCAACCAGGGCACTCCTGGACGTCCCTTGCATCATGTTCATAGTATTTCTCCTTCAACAGCCTCTTTTGCTAGGTCTCCGTTCGGTTCTCTCCAACACAATTCTGGTCACACTCCAAGAAGTCCAGCGACTTTCTCGACAGCAAGTCCGTCCCGCTTTGCAGCTACTGGAAATCAAGGACATCCTATTGGCCATCCCTCAATATCATTGCCAGGAATTAACTTTGTAGCCTCTTCGCCTTCCCCCGCTGCCTCCGGCGGTTCTTCCTCCGTGTTCAGGGATTATCGCCCACCCAATTCAACATAACATCCATGGGCTAATCAGGACTGTACATATTCTGGAGGACAACTCCGTTATTAAGTTTTTTTTTCTCTTTTTCTTGAGAAGGGGGGGGGATTAATGTTATTTTGTGTTATTATGCTGTATTAAGGGAAACACTACCGAAATATTTTTCCATGACTCTAGGCCAAAATTATCCAATATG ]
[-] EMBL CB660659 [ AAGAAAGGAAAAAAGAATTGAGTGACAAGCTGGATACTTTAAACAAGAAAAAGCATGATCTTGTGCAGATGCTGAAGCAGATTTTAAATGCTGAAGAAGAAATCAGGATGCGCACCATGCAGGCCTCATTGCGCACTACTGTGCCTCAGCCATCAGAAAACGCAGCCGATGGAAGTTCTATTTCTAGGCTGGTGCCCAGAATGACCGTTGATGTCAATTTTAGTGATGTTGCTGGCGAGTCTGAGGCGGGTTCCAACCAGGGCACTCCTGGACGTCCCTTGCATCATGTTCATAGTATTTCTCCTTCAACAGCCTCTTTTGCTAGGTCTCCGTTCGGTTCTCTCCAACACAATTCTGGTCACACTCCAAGAAGTCCAGCGACTTTCTCGACAGCAAGTCCGTCCCGCTTTGCAGCTACTGGAAATCAAGGACATCCTATTGGCCATCCCTCAATATCATTGCCAGGAATTAACTTTGTAGCCTCTTCGCCTTCCCCCGCTGCCTCCGGCGGTTCTTCCTCCGTGTTCAGGGATTATCGCCCACCCAATTCAACATAACATCCATGGGCTAATCAGGACTGTACATATTCTGGAGGACAACTCCGTTATTAAGTTTTTTTTTCTCTTTTTCTTGAGAAGGGGGGGGGATTAATGTTATTTTGTGTTATTATGCTGTATTAAGGGAAACACTACCGAAATATTTTTCCATGACTCTCGTCCAAAATTATCCAATATGTGTAAAGTTTATCATGGCTGTAAGACGTTTTATGGACACCTATGTCTATATAGTAGTAGATTGAGCCGGTCGGGCAATA]
consensusID : consensus_13790#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 864 fasta sequence
[GTGGATAGCACGGGAAACGGCCACGCCTATGCAAAACGCTGTGGAGGCGCCAACCCAAGGGGAGTTGTCTTGATGTAATTGAAGAAAGGAAAAAAGAATTGAGTGACAAGCTGGATACTTTAAACAAGAAAAAGCATGATCTTGTGCAGATGCTGAAGCAGATTTTAAATGCTGAAGAAGAAATCAGGATGCGCACCATGCAGGCCTCATTGCGCACTACTGTGCCTCAGCCATCAGAAAACGCAGCCGATGGAAGTTCTATTTCTAGGCTGGTGCCCAGAATGACCGTTGATGTCAATTTTAGTGATGTTGCTGGCGAGTCTGAGGCGGGTTCCAACCAGGGCACTCCTGGACGTCCCTTGCATCATGTTCATAGTATTTCTCCTTCAACAGCCTCTTTTGCTAGGTCT-CCGTTCGGTTCTCTCCAACACAATTCTGGTCACACTCCAAGAAGTCCAGCGACTTTCTCGACAGCAAGTCCGTCCCGCTTTGC-AGCTACTGGAAATCAAGGACATCCTATTGGCCATCCCTCAATATCATTGCCAGGAATTAACTTTGTAGCCTCTTCGCCTTCCCCCGCT-GCCTCCGGCGGTTCTT-CCTCCGT-GTTCAGGGATT-ATCGCCCACCCAATTCAACATAACATCCATGGGCTAATCAGGACTGTACATATTCTGGAGGACAACT-CCGTTATTAAGTTTTTTTTTCTC-TT--TTTCTTGAGAA---GGGGGGGGGATTAATGTTATTTTGTGTTATTATGCTGTATTAAGGGAAACACTACCGAAATATTTTTCCATGACTC-TCGTCCAAAATTATCCAATATGTGTAAAGTTTATCAAAACTGTAAGACGTTTTATGGACCAAAAAAAAAA]
[-] EMBL CB665033 [GTGGATAGCACGGGAAACGGCCACGCCTATGCAAAACGCTGTGGAGGCGCCAACCCAAGGGGAGTTGTCTTGATGTAATTGAAGAAAGGAAAAAAGAATTGAGTGACAAGCTGGATACTTTAAACAAGAAAAAGCATGATCTTGTGCAGATGCTGAAGCAGATTTTAAATGCTGAAGAAGAAATCAGGATGCGCACCATGCAGGCCTCATTGCGCACTACTGTGCCTCAGCCATCAGAAAACGCAGCCGATGGAAGTTCTATTTCTAGGCTGGTGCCCAGAATGACCGTTGATGTCAATTTTAGTGATGTTGCTGGCGAGTCTGAGGCGGGTTCCAACCAGGGCACTCCTGGACGTCCCTTGCATCATGTTCATAGTATTTCTCCTTCAACAGCCTCTTTTGCTAGGTCT CCGTTCGGTTCTCTCCAACACAATTCTGGTCACACTCCAAGAAGTCCAGCGACTTTCTCGACAGCAAGTCCGTCCCGCTTTGC AGCTACTGGAAATCAAGGACATCCTATTGGCCATCCCTCAATATCATTGCCAGGAATTAACTTTGTAGCCTCTTCGCCTTCCCCCGCT GCCTCCGGCGGTTCTT CCTCCGT GTTCAGGGATT ATCGCCCACCCAATTCAACATAACATCCATGGGCTAATCAGGACTGTACATATTCTGGAGGACAACT CCGTTATTAAGTTTTTTTTTCTC TT TTTCTTGAGAA GGGGGGGGGATTAATGTTATTTTGTGTTATTATGCTGTATTAAGGGAAACACTACCGAAATATTTTTCCATGACTC TCGTCCAAAATTATCCAATATGTGTAAAGT ]
[-] EMBL CB668711 [ GTCTTGATGTAATTGAAGAAAGGAAAAAAGAATTGAGTGACAAGCTGGATACTTTAAACAAGAAAAAGCATGATCTTGTGCAGATGCTGAAGCAGATTTTAAATGCTGAAGAAGAAATCAGGATGCGCACCATGCAGGCCTCATTGCGCACTACTGTGCCTCAGCCATCAGAAAACGCAGCCGATGGAAGTTCTATTTCTAGGCTGGTGCCCAGAATGACCGTTGATGTCAATTTTAGTGATGTTGCTGGCGAGTCTGAGGCGGGTTCCAACCAGGGCACTCCTGGACGTCCCTTGCATCATGTTCATAGTATTTCTCCTTCAACAGCCTCTTTTGCTAGGTCT CCGTTCGGTTCTCTCCAACACAATTCTGGTCACACTCCAAGAAGTCCAGCGACTTTCTCGACAGCAAGTCCGTCCCGCTTTGC AGCTACTGGAAATCAAGGACATCCTATTGGCCATCCCTCAATATCATTGCCAGGAATTAACTTTGTAGCCTCTTCGCCTTCCCCCGCT GCCTCCGGCGGTTCTT CCTCCGT GTTCAGGGATT ATCGCCCACCCAATTCAACATAACATCCATGGGCTAATCAGGACTGTACATATTCTGGAGGACAACT CCGTTATTAAGTTTTTTTTTCTC TT TTTCTTGAGAA GGGGGGGGGATTAATGTTATTTTGTGTTATTATGCTGTATTAAGGGAAACACTACCGAAATATTTTTCCATGACTC TCGTAAGGAATTATCCAATATGTGTAAAGTTTATCAAAcc ]
[-] EMBL CB679190 [ tgcACCGTTGATGTCAATTTTAGTGATGTTGCTGGGGAGTATGAGGCGGGTTCCAACCAGGGCACTCCTGGACGTCCCTTGCATCATGTTCATAGTATTTCTCCTTCAACAGCCTCTTTTGATAGGTCT CCGTTCGGTTATGTCCAACACAATTATGGTCACACTCCAAGAAGTCCACCGAATTTTTGGCCAGCAAGTCCGTCCCGCTTTCC AGATAGTGGAAATCAAGGACATCCTATTGGCCATCCCTCAATATCATTGCCAGGAATTAACTTTGTAGCCTATTAGCCTTCCCCCGGT CCCTCAGGGGGTTCTT CCTCAGT TTTCAGGGATC ATCGCCCACCCAATTCAACATAACATCCATGGGATAATCAGGACTGTACATATTTTGGAGGACACCT CCGTTATTAAGTTCTTTTTTCTC TT TTTCTTGAGAA GGGGGGGGGATTAATGTTATTTTG ]
[+] EMBL BI812603 [ TTCATAGTATTTCTCCTTCAACAGCCTCTTTTGCTAGGTCTCCCGTTCGGTTCTCTCCAACACAATTCTGGTCACACTCCAAGAAGTCAAGCGACTTTCTCGACAGCAAGTCCGTCCCGCTTTTCAAGCTACTGGAAATCAAGGACATCCTATT GCCATCCCTCAATATCATTGCCAGGAATTAACTTTGTAGCCTCTTCGCCTTCCCCCGCT GCCTCC GCGGTTCTT CCTCCGT GTTCAGGGATT ATCGCCCACCCAATTCAACATAACATCCATGGGCTAATCAGGACTGTACATATTCTGGAGGACAACT CCGTTATTAAGTTTTTTTTTCTCTTT TTTCTTGAGAAGGGGGGGGGGGGATTAATGTTATTTTGTGTTATTATGCTGTATTAAGGGAAACACTACCGAAATATTATTCCATGA C TCGTCC AAATTATCC ATATGTGTAAAGTTTAAAAAAA ]
[+] EMBL BM420433 [ CTGGAAATCAAGGACATCCTATTGGCCANCCCTCAATATCATTGCCAGGAATTAACTTTGTAGCCTCTTCGCCTTCCCCCGCTGGCCTCCGGC GTTCTTGCCTCCGTGGTTCAGGGATTGATCGCCCACCCAATTCAACATAACATCCATGGGCTAATCAGGACTGTACATATTCTGGAGGACAACTGCCGTTATTAAGTTTTTTTTTCTC TTTGTTTCTTGAGAAGGGGGGGGGGGGATTAATGTTATTTTGTGTTATTATGCTGTATTAAGGGAAACACTACCGAAATATTATTCCATGACTCGTC CCAAAATTATCC ATATGTGTAAAGTTTATCATGGCTGTAAGACGTTTTATGGACCAAAAAAAAAA]
consensusID : consensus_13790#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 694 fasta sequence
[CCGCCTCGAGCGCCGCCGCCTTGCGGCGCACCGTCGCCGGCGTTGCTCCCCAGCTCCGCTCGCGTTGAAGCCACCTCGCCACCGCACGCGTCGCCCCGGCGCCGCTTCCCCTGCCCGGCGTGCGCCGTCGACACCGCTGCCCCCCCCCTCCCCTCGCGCGCTCCACGACCGCCCGGAGACACGGGCGGGGATGGTGTCGTCGATCTCGATGTACCGCGGGAACCTCCACCGGGCCGGGGCCGACACCGACCACCGCTGGCCGGCGCCGCGCCCCACCATCACCCCGTCGCGGTTCCGCAGCCTGCTCCGCAGCCGCACTCTCTCCCTCGCCCGCCTCGACGGCGCGGCGCGGGCCGACTCCGCGGCCTCCTCCTCCACCTCCCGTCTCGCGGATGGAGACGCGGGGGTGGACGAGGAGGAGCAGGACGAGGAGGGGATGGAGATGGAGGAGGAGGAGGAGGAGGAGCATGAGCAGGAGCAGGAGGAAGAGGATGGGCAAAATGAGCAGCAACCCCAAGAGGCGGGGGAGGAGCAGGATGAGGGGGCAGTGGAGGATGCTGATATGGATGATGCCGGAGAGGTGCTCGTCGGAGGTGAAGATGCCCATGGCAATGGTGATGCTCAAGAAGGTCAAGGCGAAAGCGAAGGCTTTGATCCTAATCCAGAGAGTCAATGCTGCCTCTCGCTCGCTCGT]
[+] EMBL CB668710 [CCGCCTCGAGCGCCGCCGCCTTGCGGCGCACCGTCGCCGGCGTTGCTCCCCAGCTCCGCTCGCGTTGAAGCCACCTCGCCACCGCACGCGTCGCCCCGGCGCCGCTTCCCCTGCCCGGCGTGCGCCGTCGACACCGCTGCCCCCCCCCTCCCCTCGCGCGCTCCACGACCGCCCGGAGACACGGGCGGGGATGGTGTCGTCGATCTCGATGTACCGCGGGAACCTCCACCGGGCCGGGGCCGACACCGACCACCGCTGGCCGGCGCCGCGCCCCACCATCACCCCGTCGCGGTTCCGCAGCCTGCTCCGCAGCCGCACTCTCTCCCTCGCCCGCCTCGACGGCGCGGCGCGGGCCGACTCCGCGGCCTCCTCCTCCACCTCCCGTCTCGCGGATGGAGACGCGGGGGTGGACGAGGAGGAGCAGGACGAGGAGGGGATGGAGATGGAGGAGGAGGAGGAGGAGGAGCATGAGCAGGAGCAGGAGGAAGAGGATGGGCAAAATGAGCAGCAACCCCAAGAGGCGGGGGAGGAGCAGGATGAGGGGGCAGTGGAGGATGCTGATATGGATGATGCCGGAGAGGTGCTCGTCGGAGGTGAAGATGCCCATGGCAATGGTGATGCTCAAGAAGGTCAAGGCGAAAGCGAAGGCTTTGATCCTAATCCAGAGAGTCAATGCTGCCTCTCGCTCGCTCGT]
[+] EMBL CB660658 [CCGCCTCGAGCGCCGCCGCCTTGCGGCGCACCGTCGCCGGCGTTGCTCCCCAGCTCCGCTCGCGTTGAAGCCACCTCGCCACCGCACGCGTCGCCCCGGCGCCGCTTCCCCTGCCCGGCGTGCGCCGTCGACACCGCTGCCCCCCCCCTCCCCTCGCGCGCTCCACGACCGCCCGGAGACACGGGCGGGGATGGTGTCGTCGATCTCGATGTACCGCGGGAACCTCCACCGGGCCGGGGCCGACACCGACCACCGCTGGCCGGCGCCGCGCCCCACCATCACCCCGTCGCGGTTCCGCAGCCTGCTCCGCAGCCGCA CTCTCCCTCGCCCGCCTCGACGGCGCGGCGCGGGCCGACTCCGCGGCCTCCTCCTCCACCTCCCGTCTCGCGGATGGAGACGCGGGGGTGGACGAGGAGGAGCAGGACGAGGAGGGGATGGAGATGGAGGAGGAGGAGGAGGAGGAACCTGAGCAGGAGCGGGAGGAAGAGGATGGGCAAAATGACCAGCAGCCCCGAAAGGCGGGGGAGGAGCAGGATGAAGGGGCACTGAAAGATGCTGATATGGATGATGCCGGAGAGGTGCTCGGCGGATGTGAACATGCCCATGGa ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13790#0 TCCAGATCGGGCGTTATGCGATGCGTTACCGATACGGAGGCGGAGCGGAGAGAACGTGAC 60
consensus_13790#2 ------------------------------------------------------------
consensus_13790#1 ---------------GTGGATAGCACGGGAAACGGCCACGCCTATGCAAAACGCTGTGGA 45
consensus_13790#0 CTAGCCGCCTCGAGCGCCGCCGCCTTG-------CGGCGCACCGTCGCCGGCGTTGCTCC 113
consensus_13790#2 ----CCGCCTCGAGCGCCGCCGCCTTG-------CGGCGCACCGTCGCCGGCGTTGCTCC 49
consensus_13790#1 GGCGCCAACCCAAGGGGAGTTGTCTTGATGTAATTGAAGAAAGGAAAAAAGAATTGAGTG 105
** * * ** * * * **** * * * * * ***
consensus_13790#0 CCAGCTCCGCTCGCGTTGAAGCCACCTCGCCACCGCACGCGTCGCCCCGGCGCCGCTTCC 173
consensus_13790#2 CCAGCTCCGCTCGCGTTGAAGCCACCTCGCCACCGCACGCGTCGCCCCGGCGCCGCTTCC 109
consensus_13790#1 ACAAGCTGGATACTTTAAACAAGAAAAAGCATGATCTTGTGCAGATGCTGAAGCAGATTT 165
** * * * * * ** * * * * * * * *
consensus_13790#0 CCTGCCCGGCGTGCGCCGTCGACACCGCTGCCCCCCCCCTCCCCTCGCGCGCT------C 227
consensus_13790#2 CCTGCCCGGCGTGCGCCGTCGACACCGCTGCCCCCCCCCTCCCCTCGCGCGCT------C 163
consensus_13790#1 TAAATGCTGAAGAAGAAATCAGGATGCGCACCATGCAGGCCTCATTGCGCACTACTGTGC 225
* * * ** * ** * * * * **** ** *
consensus_13790#0 CACGACCGCCCGGAGACACGGGCGGGGATGGTGTCGTCGATCTCGATGTACCGCGGGAAC 287
consensus_13790#2 CACGACCGCCCGGAGACACGGGCGGGGATGGTGTCGTCGATCTCGATGTACCGCGGGAAC 223
consensus_13790#1 CTCAGCCATCAGAAAACGCAGCCGATGGAAGTTCTATT--TCTAGGCTGGTGCCCAGAAT 283
* * ** * * * ** * * ** * ** * *** * * ***
consensus_13790#0 CTCCACCGG-GCCGGGGCCGACACCGACCACCGCTGGCCGGCGCCGCGCCCCA-CCATCA 345
consensus_13790#2 CTCCACCGG-GCCGGGGCCGACACCGACCACCGCTGGCCGGCGCCGCGCCCCA-CCATCA 281
consensus_13790#1 GACCGTTGATGTCAATTTTAGTGATGTTGCTGGCGAGTCTGAGGCGGGTTCCAACCAGGG 343
** * * * * ** * * * * ** * *** ***
consensus_13790#0 CCCCGTCGCGGTTCCGCAGCCTGCTCCGCAGCCGCACTCTCTCCCTCGCCCGCCTCGACG 405
consensus_13790#2 CCCCGTCGCGGTTCCGCAGCCTGCTCCGCAGCCGCACTCTCTCCCTCGCCCGCCTCGACG 341
consensus_13790#1 CACTCCTGGACGTCCCTTGCATCATGTTCA-TAGTA-TTTCTCCTTCAACAGCCTCTTTT 401
* * * *** ** * * ** * * * ***** ** * *****
consensus_13790#0 GCGCGGCGCGGGCCGACTCCGCGGCCTCCTCCTCCACCTCCCGTCTCGCGGATGGAGACG 465
consensus_13790#2 GCGCGGCGCGGGCCGACTCCGCGGCCTCCTCCTCCACCTCCCGTCTCGCGGATGGAGACG 401
consensus_13790#1 GCTAGGTCTCCGTTCGGTTCTCTCCAACACAATTCTGGTCACACTCCAAGAAGTCCAGCG 461
** ** * * * * * * * * ** * * * * **
consensus_13790#0 CGGGGGTGGACGAGGAGG--AGCAGGACGAGGAGGGGATGGAGATGGAGGAGGAGGAGGA 523
consensus_13790#2 CGGGGGTGGACGAGGAGG--AGCAGGACGAGGAGGGGATGGAGATGGAGGAGGAGGAGGA 459
consensus_13790#1 ACTTTCTCGACAGCAAGTCCGTCCCGCTTTGCAGCTACTGGAAATCAAGGACATCCTATT 521
* *** ** * * * ** **** ** ****
consensus_13790#0 GGAGGAGCAGGAGCAGGAGCAGGAGGAAGAGGATGGGCAAAATGAGCAGCAACCCCAAGA 583
consensus_13790#2 GGAGGAGCATGAGCAGGAGCAGGAGGAAGAGGATGGGCAAAATGAGCAGCAACCCCAAGA 519
consensus_13790#1 GGCCATCCCTCAATATCATTGCCAGGAATTAACTTTGTAGCCTCTTCGCCTTCCCCCGCT 581
** * * * * ***** * * * * * * ****
consensus_13790#0 GGCGGGGGAGGAGCAGGATGAGGGGGCAGTGGAGGATGCTGAT---ATGGATGATGCCGG 640
consensus_13790#2 GGCGGGGGAGGAGCAGGATGAGGGGGCAGTGGAGGATGCTGAT---ATGGATGATGCCGG 576
consensus_13790#1 GCCTCCGGCGGTTCTTCCTCCGTGTTCAGGGATTATCGCCCACCCAATTCAACATAACAT 641
* * ** ** * * * * *** * ** * ** * ** *
consensus_13790#0 AGAGGTGCTCGTCGGAGGTGAAGATGCCC---ATGGCAATGGTGATGCTCAAGAAGGTCA 697
consensus_13790#2 AGAGGTGCTCGTCGGAGGTGAAGATGCCC---ATGGCAATGGTGATGCTCAAGAAGGTCA 633
consensus_13790#1 CCATGGGCTAATCAGGACTGTACATATTCTGGAGGACAACTCCGTTATTAAGTTTTTTTT 701
* * *** ** * ** * ** * * * *** * * * * *
consensus_13790#0 AGGC----------GAAAGCGAAGGCTTTGATCCTAATCCAGAGGGGAGTTGTCTTGATG 747
consensus_13790#2 AGGC----------GAAAGCGAAGGCTTTGATCCTAATCCAGAGAGTCAATGCTGCCTCT 683
consensus_13790#1 TCTCTTTTTCTTGAGAAGGGGGGGGGATTAATGTTATTTTGTGTTATTA-TGCTGTATTA 760
* *** * * ** ** ** ** * **
consensus_13790#0 TAATTGAAGAAAGGAAAAAAGAATTGAGTGACAAGCTGGATACTTTAAACAAGAAAAAGC 807
consensus_13790#2 CGCTCGCTCGT------------------------------------------------- 694
consensus_13790#1 AGGGAAACACTACCGAAATATTTTTCCATGACTCTCGTCCAAAATTATCCAATATGTGTA 820
consensus_13790#0 ATGATCTTGTGCAGATGCTGAAGCAGATTTTAAATGCTGAAGAAGAAATCAGGATGCGCA 867
consensus_13790#2 ------------------------------------------------------------
consensus_13790#1 AAGTTTATCAAAACTGTAAGACGTTTTATGGACCAAAAAAAAAA---------------- 864
consensus_13790#0 CCATGCAGGCCTCATTGCGCACTACTGTGCCTCAGCCATCAGAAAACGCAGCCGATGGAA 927
consensus_13790#2 ------------------------------------------------------------
consensus_13790#1 ------------------------------------------------------------
consensus_13790#0 GTTCTATTTCTAGGCTGGTGCCCAGAATGACCGTTGATGTCAATTTTAGTGATGTTGCTG 987
consensus_13790#2 ------------------------------------------------------------
consensus_13790#1 ------------------------------------------------------------
consensus_13790#0 GCGAGTCTGAGGCGGGTTCCAACCAGGGCACTCCTGGACGTCCCTTGCATCATGTTCATA 1047
consensus_13790#2 ------------------------------------------------------------
consensus_13790#1 ------------------------------------------------------------
consensus_13790#0 GTATTTCTCCTTCAACAGCCTCTTTTGCTAGGTCTCCGTTCGGTTCTCTCCAACACAATT 1107
consensus_13790#2 ------------------------------------------------------------
consensus_13790#1 ------------------------------------------------------------
consensus_13790#0 CTGGTCACACTCCAAGAAGTCCAGCGACTTTCTCGACAGCAAGTCCGTCCCGCTTTGCAG 1167
consensus_13790#2 ------------------------------------------------------------
consensus_13790#1 ------------------------------------------------------------
consensus_13790#0 CTACTGGAAATCAAGGACATCCTATTGGCCATCCCTCAATATCATTGCCAGGAATTAACT 1227
consensus_13790#2 ------------------------------------------------------------
consensus_13790#1 ------------------------------------------------------------
consensus_13790#0 TTGTAGCCTCTTCGCCTTCCCCCGCTGCCTCCGGCGGTTCTTCCTCCGTGTTCAGGGATT 1287
consensus_13790#2 ------------------------------------------------------------
consensus_13790#1 ------------------------------------------------------------
consensus_13790#0 ATCGCCCACCCAATTCAACATAACATCCATGGGCTAATCAGGACTGTACATATTCTGGAG 1347
consensus_13790#2 ------------------------------------------------------------
consensus_13790#1 ------------------------------------------------------------
consensus_13790#0 GACAACTCCGTTATTAAGTTTTTTTTTCTCTTTTTCTTGAGAAGGGGGGGGGATTAATGT 1407
consensus_13790#2 ------------------------------------------------------------
consensus_13790#1 ------------------------------------------------------------
consensus_13790#0 TATTTTGTGTTATTATGCTGTATTAAGGGAAACACTACCGAAATATTTTTCCATGACTCT 1467
consensus_13790#2 ------------------------------------------------------------
consensus_13790#1 ------------------------------------------------------------
consensus_13790#0 CGTCCAAAATTATCCAATATGTGTAAAGTTTATCATGGCTGTAAGACGTTTTATGGACAC 1527
consensus_13790#2 ------------------------------------------------------------
consensus_13790#1 ------------------------------------------------------------
consensus_13790#0 CTATGTCTATATAGTAGTAGATTGAGCCGGTCGGGCAATA 1567
consensus_13790#2 ----------------------------------------
consensus_13790#1 ----------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||