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Oryza sativa
cluster # 13797 cluster # 13797       Sequences # 14       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13797#0 length = 652 sequences # 13  
consensus_13797#1 length = 294 sequences # 1  

consensusID : consensus_13797#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 13
consensus length = 652
fasta sequence
                              [TCACAGCTCAGTGTCAACCACCACAACCACAAGCAAGCAAGCCATACACATCAAGAAGGCGTCTGCGTGCGAGGAAATCATCCGGTTTTTCAAGCTAAAAGCGT-GAAGATGAGCTCGTCGTCGTTGAGCAAGAAGGCGTCGTCGTTCGTGGTGACGGCGAGCATGAGCGCGGTGGAGGCGC-TCAAGGACCAGGCGGGGCTGTGCCGGTGGGACTACGCGCTCCGGTCGCTGTACCAGCGCGCCGCCGCCGCCAAGCAGGTCACC-GGCCGCGCCGTC-CCGG-TGTCGCTGTCGTCGCAGACCGGCGGCGCGGCGGCGTCCTCCTCTCCCGCCGCCGCGTGCGGCAGGGCCGCCAGGTCGAAGAGGTCGGAGGAGGAGAAGATGCAGAAGGCGTATCACCTCGTCTGCTGGGGACCTAATTAAAATCTGTTCTTCAAATTCGTGATTTCGTGTAGTAGTTTTTTCGTTTGCAATTTGTCCACCCCTCATTTTCTGGTGTGTAAATCGAGCCAATACCTGCAGGGATTTTTGTATTTTGATCCGTTTTCATGTACTACTACTTCCCCATCTGATTCTGATGGAGAATTGCTATGTGCAAACTACGGAGT--AAAAATCAACAAGATGATGCGATTGTTGCACGGAAAAAATTAAAAAA]

[+] EMBL AK103599             [TCACAGCTCAGTGTCAACCACCACAACCACAAGCAAGCAAGCCATACACATCAAGAAGGCGTCTGCGTGCGAGGAAATCATCCGGTTTTTCAAGCTAAAAGCGT GAAGATGAGCTCGTCGTCGTTGAGCAAGAAGGCGTCGTCGTTCGTGGTGACGGCGAGCATGAGCGCGGTGGAGGCGC TCAAGGACCAGGCGGGGCTGTGCCGGTGGGACTACGCGCTCCGGTCGCTGTACCAGCGCGCCGCCGCCGCCAAGCAGGTCACC GGCCGCGCCGTC CCGG TGTCGCTGTCGTCGCAGACCGGCGGCGCGGCGGCGTCCTCCTCTCCCGCCGCCGCGTGCGGCAGGGCCGCCAGGTCGAAGAGGTCGGAGGAGGAGAAGATGCAGAAGGCGTATCACCTCGTCTGCTGGGGACCTAATTAAAATCTGTTCTTCAAATTCGTGATTTCGTGTAGTAGTTTTTTCGTTTGCAATTTGTCCACCCCTCATTTTCTGGTGTGTAAATCGAGCCAATACCTGCAGGGATTTTTGTATTTTGATCCGTTTTCATGTACTACTACTTCCCCATCTGATTCTGATGGAGAATTGCTATGTGCAAACTACGGAGT  AAAAATCAACAAGATGATGCGAT                        ]
[+] EMBL C72369               [          GTGTCAACCACCACAACCACAAGCAAGCAAGCCATACACATCAAGAAGGCGTCTGCGTGCGAGGAAATCATCCGGTTTTTCAAGCTAAAAGCGT GAAGATGAGCTCGTCGTCGTTGAGCAAGAAGGCGTCGTCGTTCGTGGTGACGGCGAGCATGAGCGCGGTGGAGGCGCTTCAAGGACCAGGCGGGGCTGTNCCGGTGGGACTACGCGCTCCGGTCGCTGTACCAGGGCGCCGCCGCCGCCAAGCAGGTCACCNGGCCGCGCCGTT CCGGTTGTCGCTGTCGTCGna                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL C29030               [            GTCAACCACCACAACCACAAGCAAGCAAGCCATACACATCAAGAAGGCGTCTGCGTGCGAGGAAATCATCCGGTTTTTCAAGCTAAAAGCGT GAAGATGAGCTCGTNGTCGTTGAGCAAGAAGGCGTCGTCGTTCGTGGTGACGGCGAGCATGAGCGCGGTGGAGGCGC TCAAGGACCAGGCGGGGCTGTNCCGGTGGGACTACGCGCTCCGGTCGCTGTACCAGCGCGCCGCCGCCGCCAAGCAGGTCACC GGCCGNG CGTC CCGG TNTCGCTGTC                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL OSC25211             [                 CCACCACAACCACAAGCAAGCAAGCCATACACATCAAGAAGGCGTCTGCGTGCGAGGAAATCATCCGGTTTTTCAAGCTAAAAGCGT GAAGATGAGCTCGTCGTCGTTGAGCAAGAAGGCGTCGTCGTTCGTGGTGACGGCGAGCATGAGCGCGGTGGAGGCGC TCAAGGACCAGGCGGGGCTGTNCCGGTGGGACTACGCGCTCCGGTCGCTGTACCAG                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL OSC25201             [                 CCACCACAACCACAAGCAAGCAAGCCATACACATCAAGAAGGCGTCTGCGTGCGAGGAAATCATCCGGTTTTTCAAGCTAAAAGCGT GAAGATGAGCTCGTCGTCGTTGAGCAAGAAGGCGTCGTCGTTCGTGGTGACGGCGAGCATGAGCGCGGTGGAGGCGC TCAAGGACCAGGCGGGGCTGTGCCGGTGGGACTACGCGCTCCGGTCGCTGTACCAG                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL C97737               [                  CACCACAACCACAAGCAAGCAAGCCATACACATCAAGAAGGCGTCTGCGTGCGAGGAAATCATCCGGTTTTTCAAGCTAAAAGCGTNGAAGATGAGCTCGTCGTCGTTGAGCAAGAAGGCGTCGTCGTTCGTGGTGACGGCGAGCATGAGCGCGGTGGAGGC N TCAAGGACCAGGCGGGGCTGTGCGGATNGGACTACGCGCTCCGGTCGCTGTACCAGCGCGCCGNCGTCGCCAAGCAGGTCACC GGCCGCGC  TCNCCGG TGTCGCTGT                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL C97701               [                  CACCACAACCACAAGCAAGCAAGCCATACACATCAAGAAGGCGTCTGCGTGCGAGGAAATCATCCGGTTTTTCAAGCTAAAAGCGT GAAGATGAGCTCGTCGTCGTTGAGCAAGAAGGCGTCGTCGTTCGTGGTGACGGCGAGCATGAGCGCGGTGGAGGCGC TCAAGGACCAGGCGGGGCTGTGCCGGTGGGACTACGCGCTCCGGTCGCTGTACCAGCGCGCCGTCGNCGCCAAGCAGGTCACC GGCCGCGGCGTC CCGG TGTCGCTGTCGTCGCAGNCGGGCGGCGCGGCGGCGTCCTCCTCTCCCGCCGCCGCGTGCGCAAGGGCCG CAGGTCGAAGAGGTCGGAGGAGGAGAAG TTNAGAAGGCGTATCA CTCGTCTG TTGGGACCTAATT AAATCTGTT TT NAATTCG                                                                                                                                                                                                                       ]
[+] EMBL AU197759             [                   ACCACAACCACAAGCAAGCAAGCCATACACATCAAGAAGGCGTCTGCGTGCGAGGAAATCATCCGGTTTTTCAAGCTAAAAGCGT GAAGATGAGCTCGTCGTCGTTGAGCAAGAAGGCGTCGTCGTTCGTGGTGACGGCGAGCATGAGCGCGGTGGAGGCGC TCAAGGACCAGGCGGGGCTGTGCCGGTGGGACTACGCGCTCCGGTCGCTGTACCAGCGCGCCGCCGCCGCCAAGCAGGTCACC GGCCGCGCCGTC CCGG TGTCGCTGTCGTCGCAGACCG                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL OSC21191             [                   ACCACAACCACAAGCAAGCAAGCCATACACATCAAGAAGGCGTCTGCGTGCGAGGAAATCATCCGGTTTTTCAAGCTAAAAGCGT GAAGATGAGCTCGTCGTCGTTGAGCAAGAAGGCGTCGTCGTTCGTGGTGACGGCGAGCATGAGCGCGGTGGAGGCGC TCAAGGACCAGGCGGGGCTGTGCCGGTGGGACTACGCGCTCCGGTCGCTGTACCAGCGCGNCGCCGACGNCAAGCAGGTCACC GGCCGCGCCGTC CCGG TGTCGCTGTCGTCGCAGACCGGCGGCGCGGCGGCGTCCTCCTCTCCCGCCGCCGCGTGC GCAGGGCCGCCAGGTCGAAGAGGTCGGAGGAGGAGAAGATGAAG AGGCGTATCA CTCGTCT                                                                                                                                                                                                                                                           ]
[-] EMBL BI306328             [                              AAGCAAGCAAGCCATACACATCAAGAAGGCGTCTGCGTGCGAGGAAATCATCCGGTTTTTCAAGCTAAAAGCGT GAAGATGAGCTTGTCGTCGTTGAGCAAGAAGGCGTTGTCGTTCGTGGTGACGGAGAGCATGAGCGCGGTGGAGGCGC TCAAGGACCAGGCGGGGCTGTGCCGGTGGGACTACGCGCTCCGGTCGCTGTACCAGCGCGCCGCCGCTGCCAAGCAGGTCACC GGCCGCGCCGTC CCGG TGTCGCTGTCGTCGCAGACCGGAGGCGCGGCGGCGTCCTCCTCTCCCGCCGCCGAGTGCGGCAGGGCCGCCAGGTCGAAAAGGTCGGAGGAGGAGAAGATGCAGAAGGCGTATCACCTCGTGTGCTGGGGACCTAATTAAAATCTGTTCTTCAAATTCGTGATTTCGTGTAGTAGTTTTTTCGTTTGCAATTTGTCCACCCCTCATTTTCTGGTGTGTAAATCGAGCCAATACCTGCAGGGATTTTTGTATTTTGATCCGTTTTCATGTACTACTACTT CCCATCTGATTCTGATGGTGAATTGCTATGTGCAAACTACGGAGTAAAAAAATCCACAAGAAGATGCGATTGTTGCAtg               ]
[+] EMBL AU070172             [                                   AGCAAGCCATACACATCAAGAAGGCGTCTGCGTGCGAGGAAATCATCCGGTTTTTCAAGCTAAAAGCGT GAAGATGAGCTCGTCGTCGTTGAGCAAGAAGGCGTCGTCGTTCGTGGTGACGGCGAGCATGAGCGCGGTGGAGGCGC TCAAGGACCAGGCGGGGCTGTGCCGGTGGGACTACGCGCTCCGGTCGCTGTACCAGCGCGCCGCCGCCGCCAAGCAGGTCACC GGCCGCGCCGTC CCGG TGTCGCTGTCGTCGCAGACCGGCGGCGCGGCGGCGTCCTCCTCTCCCGCCGCCGCGTGCGGCAGGGCCGCCAGGTCGAAGAGGTCGGAGGAGGAGAAGATGCAGAAGGCGTATCACCTCGTCTGCTGGGGACCTAATTAAAATCTGTTCTTCAAATTCGTGATTTCGTGTAGTAGTTTTTTCGTTTGCAATTTGTCCACCCCTCATTTTCTGGTGTGTAAATCGAGCCAATACCTGCAGGGATTTTTGTATTTTGATCCGTTTTCATGTACT                                                                                                      ]
[+] EMBL AU173098             [                                                                                                                                                                                                                  GGGACTACGCGCTCCGGTCGCTGTACCAGCGCGCCGCCGCCGCCAAGCAGGTCACC GGCCGCGCCGTC CCGG TGTCGCTGTCGTCGCAGACCGGCGGCGCGGCGGCGTCCTCCTCTCCCGCCGCCGCGTGCGGCAGGGCCGCCAGGTCGAAGAGGTCGGAGGAGGAGAAGATGCAGAAGGCGTATCACCTCGTCTGCTGGGGACCTAATTAAAATCTGTTCTTCAAATTCGTGATTTCGTGTAGTAGTTTTTTCGTTTGCAATTTGTCCACCCCTCATTTTCTGGTGTGTAAATCGAGCCAATACCTGCAGGGATTTTTGTATTTTGATCCGTTTTCATGTACTACTACTTCCCCATCTGATTCTGATGGAGAATTGCTATGTGCAAACTACGGAGT  AAAAATCAACAAGATGATGCGATTGTTGCACGGAAAAAA        ]
[+] EMBL AU197760             [                                                                                                                                                                                                                                                                                                                                        TCCCGCCGCCGCGTGCGGCAGGGCCGCCAGGTCGAAGAGGTCGGAGGAGGAGAAGATGCAGAAGGCGTATCACCTCGTCTGCTGGGGACCTAATTAAAATCTGTTCTTCAAATTCGTGATTTCGTGTAGTAGTTTTTTCGTTTGCAATTTGTCCACCCCTCATTTTCTGGTGTGTAAATCGAGCCAATACCTGCAGGGATTTTTGTATTTTGATCCGTTTTCATGTACTACTACTTCCCCATCTGATTCTGATGGAGAATTGCTATGTGCAAACTACGGAGT  AAAAATCAACAAGATGATGCGATTGTTGCACGGAATTAATTAAAAAA]


>consensus_13797#0 TCACAGCTCAGTGTCAACCACCACAACCACAAGCAAGCAAGCCATACACATCAAGAAGGC GTCTGCGTGCGAGGAAATCATCCGGTTTTTCAAGCTAAAAGCGTGAAGATGAGCTCGTCG TCGTTGAGCAAGAAGGCGTCGTCGTTCGTGGTGACGGCGAGCATGAGCGCGGTGGAGGCG CTCAAGGACCAGGCGGGGCTGTGCCGGTGGGACTACGCGCTCCGGTCGCTGTACCAGCGC GCCGCCGCCGCCAAGCAGGTCACCGGCCGCGCCGTCCCGGTGTCGCTGTCGTCGCAGACC GGCGGCGCGGCGGCGTCCTCCTCTCCCGCCGCCGCGTGCGGCAGGGCCGCCAGGTCGAAG AGGTCGGAGGAGGAGAAGATGCAGAAGGCGTATCACCTCGTCTGCTGGGGACCTAATTAA AATCTGTTCTTCAAATTCGTGATTTCGTGTAGTAGTTTTTTCGTTTGCAATTTGTCCACC CCTCATTTTCTGGTGTGTAAATCGAGCCAATACCTGCAGGGATTTTTGTATTTTGATCCG TTTTCATGTACTACTACTTCCCCATCTGATTCTGATGGAGAATTGCTATGTGCAAACTAC GGAGTAAAAATCAACAAGATGATGCGATTGTTGCACGGAAAAAATTAAAAAA



consensusID : consensus_13797#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 294
fasta sequence
                              [CTCNTCTCCCGCCNCCGCGTGCGGCAGGGCCGCCAGGTCGAAGAGGTCGGAGGAGGAGAAGATGCAGAAGGGGTATCNCCTCGTNTGCTGGGGACCTAATTAAAATCTGTTCTTCAAATTCGTGATTTCNCCCNAGTAGTTTTTTCGTTTGCAATTTGTCCACCCCTCATTTTNTGGTGTGTAAATCGAGCCAATACCTGCAGGGATTTTTGTATTTTGATCCGTTTTCATGTACTACTACTTCCCCATNTGATTNTGATGGAGAATTGCTAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU182256             [CTCNTCTCCCGCCNCCGCGTGCGGCAGGGCCGCCAGGTCGAAGAGGTCGGAGGAGGAGAAGATGCAGAAGGGGTATCNCCTCGTNTGCTGGGGACCTAATTAAAATCTGTTCTTCAAATTCGTGATTTCNCCCNAGTAGTTTTTTCGTTTGCAATTTGTCCACCCCTCATTTTNTGGTGTGTAAATCGAGCCAATACCTGCAGGGATTTTTGTATTTTGATCCGTTTTCATGTACTACTACTTCCCCATNTGATTNTGATGGAGAATTGCTAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_13797#1 CTCNTCTCCCGCCNCCGCGTGCGGCAGGGCCGCCAGGTCGAAGAGGTCGGAGGAGGAGAA GATGCAGAAGGGGTATCNCCTCGTNTGCTGGGGACCTAATTAAAATCTGTTCTTCAAATT CGTGATTTCNCCCNAGTAGTTTTTTCGTTTGCAATTTGTCCACCCCTCATTTTNTGGTGT GTAAATCGAGCCAATACCTGCAGGGATTTTTGTATTTTGATCCGTTTTCATGTACTACTA CTTCCCCATNTGATTNTGATGGAGAATTGCTAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13797#0      TCACAGCTCAGTGTCAACCACCACAACCACAAGCAAGCAAGCCATACACATCAAGAAGGC 60
consensus_13797#1      ------------------------------------------------------------
                                                                                   

consensus_13797#0      GTCTGCGTGCGAGGAAATCATCCGGTTTTTCAAGCTAAAAGCGTGAAGATGAGCTCGTCG 120
consensus_13797#1      ------------------------------------------------------------
                                                                                   

consensus_13797#0      TCGTTGAGCAAGAAGGCGTCGTCGTTCGTGGTGACGGCGAGCATGAGCGCGGTGGAGGCG 180
consensus_13797#1      ------------------------------------------------------------
                                                                                   

consensus_13797#0      CTCAAGGACCAGGCGGGGCTGTGCCGGTGGGACTACGCGCTCCGGTCGCTGTACCAGCGC 240
consensus_13797#1      ------------------------------------------------------------
                                                                                   

consensus_13797#0      GCCGCCGCCGCCAAGCAGGTCACCGGCCGCGCCGTCCCGGTGTCGCTGTCGTCGCAGACC 300
consensus_13797#1      ------------------------------------------------------------
                                                                                   

consensus_13797#0      GGCGGCGCGGCGGCGTCCTCCTCTCCCGCCGCCGCGTGCGGCAGGGCCGCCAGGTCGAAG 360
consensus_13797#1      -----------------CTCNTCTCCCGCCNCCGCGTGCGGCAGGGCCGCCAGGTCGAAG 43
                                        *** ********* *****************************

consensus_13797#0      AGGTCGGAGGAGGAGAAGATGCAGAAGGCGTATCACCTCGTCTGCTGGGGACCTAATTAA 420
consensus_13797#1      AGGTCGGAGGAGGAGAAGATGCAGAAGGGGTATCNCCTCGTNTGCTGGGGACCTAATTAA 103
                       **************************** ***** ****** ******************

consensus_13797#0      AATCTGTTCTTCAAATTCGTGATTTCGTG-TAGTAGTTTTTTCGTTTGCAATTTGTCCAC 479
consensus_13797#1      AATCTGTTCTTCAAATTCGTGATTTCNCCCNAGTAGTTTTTTCGTTTGCAATTTGTCCAC 163
                       **************************     *****************************

consensus_13797#0      CCCTCATTTTCTGGTGTGTAAATCGAGCCAATACCTGCAGGGATTTTTGTATTTTGATCC 539
consensus_13797#1      CCCTCATTTTNTGGTGTGTAAATCGAGCCAATACCTGCAGGGATTTTTGTATTTTGATCC 223
                       ********** *************************************************

consensus_13797#0      GTTTTCATGTACTACTACTTCCCCATCTGATTCTGATGGAGAATTGCTATGTGCAAACTA 599
consensus_13797#1      GTTTTCATGTACTACTACTTCCCCATNTGATTNTGATGGAGAATTGCTAAAAAAAAAAAA 283
                       ************************** ***** ****************     ***  *

consensus_13797#0      CGGAGTAAAAATCAACAAGATGATGCGATTGTTGCACGGAAAAAATTAAAAAA 652
consensus_13797#1      AAAAAAAAAAA------------------------------------------ 294
                          *  *****                                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)